Query gi|254780896|ref|YP_003065309.1| ABC transporter membrane spanning protein (branched chain amino acid) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 351
No_of_seqs 156 out of 4108
Neff 8.1
Searched_HMMs 33803
Date Wed Jun 1 19:24:33 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780896.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2nq2_A Hypothetical ABC trans 97.5 0.0025 7.3E-08 37.5 10.6 57 185-246 105-161 (168)
2 >2qi9_A Vitamin B12 import sys 96.4 0.046 1.4E-06 29.8 23.2 113 206-336 207-324 (326)
3 >2kfs_A Conserved hypothetical 21.5 32 0.00095 12.5 0.8 16 217-232 35-50 (75)
4 >1mn8_A Core protein P15; heli 17.6 45 0.0013 11.6 2.6 36 203-238 7-42 (100)
5 >1uhu_A Product of riken cDNA 15.8 50 0.0015 11.3 2.8 36 203-238 7-42 (50)
6 >2rdd_B UPF0092 membrane prote 15.4 51 0.0015 11.3 1.1 12 326-337 13-24 (37)
7 >1pjc_A Protein (L-alanine deh 11.7 41 0.0012 11.9 -0.7 25 207-233 133-157 (169)
8 >1zs4_A Regulatory protein CII 10.9 69 0.002 10.5 1.5 23 212-234 23-45 (62)
9 >3cux_A Malate synthase; TIM b 9.7 25 0.00075 13.1 -2.4 20 331-350 87-106 (155)
10 >1y6u_A XIS, excisionase from 9.1 81 0.0024 10.0 1.2 18 217-234 20-37 (70)
No 1
>>2nq2_A Hypothetical ABC transporter permease protein HI1471; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} (A:94-261)
Probab=97.46 E-value=0.0025 Score=37.50 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999996130599999996421222334202322367999998799999999
Q gi|254780896|r 185 YVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAG 246 (351)
Q Consensus 185 ~~~~~~~~~~~~l~~~l~rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG 246 (351)
+........+....+++. |++....-+||.|+.+|+|++|.|.....+++.+.+.+=
T Consensus 105 ~~~~~~~~~~~~~~~~~~-----~~l~ll~lg~~~A~slGv~v~~~~~~~l~~~~ll~a~~v 161 (168)
T 2nq2_A 105 LFFFVPFLLCSSILLSLS-----WRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQV 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHTT-----TGGGGGGSCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH-----HHCCHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 432433047988888765-----525543179699845678778999999999999999998
No 2
>>2qi9_A Vitamin B12 import system permease protein BTUC; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_A* (A:)
Probab=96.45 E-value=0.046 Score=29.76 Aligned_cols=113 Identities=13% Similarity=0.016 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC-CHHHHHHHHHHHHHCCCCC---H
Q ss_conf 99999996421222334202322367999998799999999999866440113543-1589999889887347422---3
Q gi|254780896|r 206 ISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMF-KFSENIIVISIVILGGMTS---L 281 (351)
Q Consensus 206 ~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is~~lAgiaG~l~a~~~~~v~p~~~-~~~~~~~~~~~vvlGG~gs---~ 281 (351)
..|++....-+||.|+.+|+|++|+|.....+++.+++.+=.+ .| |-.| ++. ..-++-. +.|... +
T Consensus 207 ~~~~l~~l~lg~~~A~slGv~v~~~~~~~lil~~~lta~~vs~----vG---~I~FvGLi--~p~iar~-l~~~~~~~~l 276 (326)
T 2qi9_A 207 QSRPXNXLALGEISARQLGLPLWFWRNVLVAATGWXVGVSVAL----AG---AIGFIGLV--IPHILRL-SGLTDHRVLL 276 (326)
T ss_dssp CHHHHHHHHTCHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH----HC---CCCSSTTH--HHHHHHT-TTCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH----CC---HHHHHHHH--HHHHHHH-HCCCCCCHHH
T ss_conf 8767665441066777068776676689999999999999970----35---88898986--8999998-6277654699
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 89-99999999999999987312210000123444202589999999999999858
Q gi|254780896|r 282 SK-IAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRS 336 (351)
Q Consensus 282 ~G-a~lGa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lilvll~rP 336 (351)
+. +++|+.++...+...+....+ ..........+++....+.++.|-
T Consensus 277 ~~s~l~Ga~lll~~d~l~r~~~~~--------~eiPvg~~~~liG~p~fi~ll~k~ 324 (326)
T 2qi9_A 277 PGCALAGASALLLADIVARLALAA--------AELPIGVVTATLGAPVFIWLLLKA 324 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSTT--------CCCCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999999660566--------663199999999999999976204
No 3
>>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis} (A:1-75)
Probab=21.50 E-value=32 Score=12.50 Aligned_cols=16 Identities=6% Similarity=-0.103 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 2223342023223679
Q gi|254780896|r 217 QKAFFSLNTTIIFAKL 232 (351)
Q Consensus 217 ~~aA~~~Ginv~~~~~ 232 (351)
|+.|+.+|+.++|++-
T Consensus 35 pevAe~Lgv~vtrV~~ 50 (75)
T 2kfs_A 35 PRVAELLGVPVSKVAQ 50 (75)
T ss_dssp HHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHH
T ss_conf 9999996988899999
No 4
>>1mn8_A Core protein P15; helical bundle, viral protein; 1.00A {Moloney murine leukemia virus} (A:)
Probab=17.58 E-value=45 Score=11.61 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 305999999964212223342023223679999987
Q gi|254780896|r 203 RTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVS 238 (351)
Q Consensus 203 rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is 238 (351)
.|+++.-+.--.|-+.+|...|++++|-|...|+-+
T Consensus 7 sTPLsl~L~hw~dvk~ra~n~sv~vkkgkl~t~C~s 42 (100)
T 1mn8_A 7 TTPLSLTLGHWKDVERIAHNQSVDVKKRRWVTFCSA 42 (100)
T ss_dssp CCHHHHHHHTHHHHHHHHHHTTCCCCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC
T ss_conf 677899998788888876416742032502223113
No 5
>>1uhu_A Product of riken cDNA 3110009E22; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} (A:1-50)
Probab=15.82 E-value=50 Score=11.34 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 305999999964212223342023223679999987
Q gi|254780896|r 203 RTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVS 238 (351)
Q Consensus 203 rT~~G~~lrAv~~n~~aA~~~Ginv~~~~~~af~is 238 (351)
-|++-+-+.--+|=+.+|...|++++|-|..+|+-+
T Consensus 7 sTPLsLtL~H~~dv~~Ra~n~sveVkKgk~~T~C~s 42 (50)
T 1uhu_A 7 GTPLSLTLDHWSEIRSRAHNLSVEIKKGPWRTFCAS 42 (50)
T ss_dssp CCHHHHHHHTHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECC
T ss_conf 897899999899998887406742036715776514
No 6
>>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli} (B:)
Probab=15.42 E-value=51 Score=11.28 Aligned_cols=12 Identities=17% Similarity=0.517 Sum_probs=5.5
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999998589
Q gi|254780896|r 326 IALFLVILMRSH 337 (351)
Q Consensus 326 ~~lilvll~rP~ 337 (351)
++++-+++.|||
T Consensus 13 ~~ifYFllIRPQ 24 (37)
T 2rdd_B 13 GLIFYFMILRPQ 24 (37)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHHCHH
T ss_conf 999999993721
No 7
>>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} (A:1-123,A:316-361)
Probab=11.72 E-value=41 Score=11.86 Aligned_cols=25 Identities=4% Similarity=0.114 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999642122233420232236799
Q gi|254780896|r 207 SNAWRTIRDNQKAFFSLNTTIIFAKLS 233 (351)
Q Consensus 207 G~~lrAv~~n~~aA~~~Ginv~~~~~~ 233 (351)
-+-+||+++||..+ .|.|+.+-++.
T Consensus 133 ~~g~~a~~~~~~~~--~g~n~~~~~~~ 157 (169)
T 1pjc_A 133 NQGLKALETDDALA--KGLNVQAHRLV 157 (169)
T ss_dssp HHGGGGGGTCHHHH--HHEEEETTEEC
T ss_pred HCCCCCCCCCHHHH--CCCEEECCEEC
T ss_conf 28553579894787--15689799983
No 8
>>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription/DNA complex; HET: DNA; 1.70A {Enterobacteria phage lambda} (A:1-62)
Probab=10.94 E-value=69 Score=10.47 Aligned_cols=23 Identities=4% Similarity=-0.128 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96421222334202322367999
Q gi|254780896|r 212 TIRDNQKAFFSLNTTIIFAKLSA 234 (351)
Q Consensus 212 Av~~n~~aA~~~Ginv~~~~~~a 234 (351)
|...+...|+.+|+|...+-.+-
T Consensus 23 a~~gq~~vAe~iGvd~StiSR~K 45 (62)
T 1zs4_A 23 AMLGTEKTAEAVGVDKSQISRWK 45 (62)
T ss_dssp HHHCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHCCHHHHHHHCCCHHHHHHHH
T ss_conf 99720468998399899998998
No 9
>>3cux_A Malate synthase; TIM barrel, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.70A {Bacillus anthracis} (A:72-167,A:336-394)
Probab=9.69 E-value=25 Score=13.12 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHCCCCCCCCCCCHHHCC
Q ss_conf 99985899656674021015
Q gi|254780896|r 331 VILMRSHSLLRLRTPSNFLE 350 (351)
Q Consensus 331 vll~rP~Gl~g~r~~~~~~~ 350 (351)
+++.||||.=+.+.+.++.|
T Consensus 87 ~L~vRPRGwHp~~n~~A~~k 106 (155)
T 3cux_A 87 VLIVRPRGWHPEANEAAFEK 106 (155)
T ss_dssp EEEEECCCTT--------CH
T ss_pred EEECCCCCCCHHHHHHHHHH
T ss_conf 78504764465567999999
No 10
>>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis} (A:)
Probab=9.06 E-value=81 Score=10.04 Aligned_cols=18 Identities=11% Similarity=-0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 222334202322367999
Q gi|254780896|r 217 QKAFFSLNTTIIFAKLSA 234 (351)
Q Consensus 217 ~~aA~~~Ginv~~~~~~a 234 (351)
+|+|+.+||..++++-++
T Consensus 20 ~Eaa~ylgis~~~ly~l~ 37 (70)
T 1y6u_A 20 EEASKYFRIGENKLRRLA 37 (70)
T ss_dssp HHHHHHTCSCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH
T ss_conf 999999550499999999
Done!