RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780896|ref|YP_003065309.1| ABC transporter membrane spanning protein (branched chain amino acid) [Candidatus Liberibacter asiaticus str. psy62] (351 letters) >gnl|CDD|119323 cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.. Length = 268 Score = 151 bits (385), Expect = 2e-37 Identities = 83/252 (32%), Positives = 136/252 (53%), Gaps = 14/252 (5%) Query: 46 ILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGA 105 ILIY + A GL++++G G LSL + IGAY+ +L +R GL WL + + +++ Sbjct: 1 ILIYAILALGLNLLLGYAGQLSLGHAAFFGIGAYTAALLATRLGLPFWLALLAAGLVAAL 60 Query: 106 CGMIMGLPSLKFRGDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRS 165 G+++GLP+L+ RG Y AIATL +EI + + + W +T G G+ S Sbjct: 61 VGLLLGLPALRLRGVYFAIATLAFAEIVRLLALNWSSLTGGSNGL--------------S 106 Query: 166 LIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNT 225 I + + YY++L + L ++ L R+ A R IR+N+ A +L Sbjct: 107 GIPPPLLGGLLLSSPLAFYYLVLAVLLLVLLLLRRLVRSPFGRALRAIRENEVAAEALGI 166 Query: 226 TIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGGMTSLSKIA 285 + KL AFA+S+A G+AGA +A +SP+ F F+ +I ++ +V+LGG+ SL Sbjct: 167 NVTRYKLLAFALSAALAGLAGALYAHYLGFVSPESFGFALSIELLLMVVLGGLGSLLGPV 226 Query: 286 KATAILIGVVEL 297 A+L+ + EL Sbjct: 227 LGAALLVLLPEL 238 >gnl|CDD|33917 COG4177, LivM, ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism]. Length = 314 Score = 129 bits (325), Expect = 2e-30 Identities = 91/282 (32%), Positives = 150/282 (53%), Gaps = 17/282 (6%) Query: 18 LAVVYPLLLFLFLGATKSQKYIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIG 77 L ++ L+L L S + ++ ILIY + A GL++VVG GLLSL + +G Sbjct: 7 LLLILALVLLLIAPLLLSLPFYLNLLTLILIYAILALGLNLVVGYAGLLSLGHAAFFGLG 66 Query: 78 AYSYVILGSRY--GLSIWLLIPVSAMISGACGMIMGLPSLKFRGDYLAIATLIMSEIFQN 135 AY+ +L +R GLS WL + + +++ G+++GLP+L+ RGDYLAI TL EIF+ Sbjct: 67 AYTAALLLARLLGGLSFWLALLLGGLVAALLGLLLGLPALRLRGDYLAIVTLAFGEIFRI 126 Query: 136 ILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSA 195 +L+ +T G+ G+ R LG F +YY+ L + L+ Sbjct: 127 LLLNATELTGGENGLSGIPRPTLLG---------------FPSRARGLYYLALLLLLLTL 171 Query: 196 SIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDR 255 ++ L R+ A R IR+++ A +L + KL AF +S+A G+AGA +A Sbjct: 172 LVLERLVRSPFGRALRAIREDEIAARALGINVTRYKLLAFVISAAIAGIAGALYALYLGF 231 Query: 256 ISPDMFKFSENIIVISIVILGGMTSLSKIAKATAILIGVVEL 297 +SP+ F F+ +I V+++V+LGG +L +++ + EL Sbjct: 232 VSPESFSFTLSIEVLAMVVLGGAGTLFGALLGAVLVVLLKEL 273 >gnl|CDD|111540 pfam02653, BPD_transp_2, Branched-chain amino acid transport system / permease component. This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system. Length = 267 Score = 69.9 bits (172), Expect = 1e-12 Identities = 64/259 (24%), Positives = 112/259 (43%), Gaps = 18/259 (6%) Query: 38 YIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIP 97 + ++ Q I + A GL++V G+++L A+GAY +L + G ++WL + Sbjct: 1 NLLNILTQAAILGIAALGLTLVF-IAGVINLGVGGFMALGAYVAALLLALGGSNLWLALL 59 Query: 98 VSAMISGACGMIMGLPSLKFRGDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLY 157 ++ A G++ GL ++ + + + L+ + L I G AG Sbjct: 60 AGLLVGAAVGLLNGLLVVRLKVPEVIVTLLLNFILRGLTLFLLTGILGGPAG-------- 111 Query: 158 FLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQ 217 +T+ L+ F SF IF+ +L L+ + L LRRT A R + +N Sbjct: 112 --TSTIVDLLGFPGLFLSFGFGVIFLLALL-----LALLVWLLLRRTRFGRALRAVGENP 164 Query: 218 KAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGG 277 +A + K+ AF +S A G+AGA S P+ I+ V+LGG Sbjct: 165 RAARYAGINVKRTKILAFVLSGALAGLAGALLVLSTGSADPNA-GLGLGFDAIAAVVLGG 223 Query: 278 MTSLSKIAKATAILIGVVE 296 S A++IG+++ Sbjct: 224 AGSPIGAI-VGALIIGLLQ 241 >gnl|CDD|119324 cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.. Length = 272 Score = 58.2 bits (142), Expect = 3e-09 Identities = 62/255 (24%), Positives = 111/255 (43%), Gaps = 27/255 (10%) Query: 48 IYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACG 107 IY + A GL+++ G G+++ Y +GAY L GL WL + ++ +++ G Sbjct: 7 IYALIALGLTLIFGVTGVINFAHGEFYMLGAYVAYTLLVALGLPFWLALLLALLVAALLG 66 Query: 108 MIMGLPSLK-FRGD---YLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTV 163 +++ L+ RG L I + + Q +L+ + ++ + G T+ Sbjct: 67 VLLERLVLRPLRGAPLLTLLITFGGLLILLQGLLLIFGGDPRVPPPPLLSGSVELGGVTI 126 Query: 164 RSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSL 223 Y +F ++ L A++ L+LRRT + A R + N +A L Sbjct: 127 PP-------------YRLF---IIAVALVLLAALYLFLRRTRLGRAIRAVAQNPEAARLL 170 Query: 224 --NTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGGMTSL 281 N +FA FA+ +A G+AG A +SP M + + V+LGG+ S+ Sbjct: 171 GINVRRVFA--LTFALGAALAGLAGVLL-APITGVSPTM-GLLLLLKAFAAVVLGGLGSI 226 Query: 282 SKIAKATAILIGVVE 296 A +L+G+ E Sbjct: 227 -PGAVVGGLLLGLAE 240 >gnl|CDD|119320 cd06574, TM_PBP1_branched-chain-AA_like, Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.. Length = 266 Score = 58.1 bits (141), Expect = 4e-09 Identities = 57/234 (24%), Positives = 94/234 (40%), Gaps = 19/234 (8%) Query: 47 LIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGAC 106 LIY + A G+ IV LG L ++ +GA IL G + WL + + + A Sbjct: 2 LIYAILALGVYIVFRILGFPDLTVDGSFPLGAAVAAILIV-AGYNPWLALIAAILAGAAA 60 Query: 107 GMIMGLPSLKFRGDYLAIATLIMSEIFQ-NILIKWKPITNGKAGIYVADRLYFLGTTVRS 165 G++ G + + + L LIM ++ N+ I P LGT Sbjct: 61 GLVTGFLHTRLKINGLLAGILIMIGLYSINLRIMGGPNIP-------------LGTRDTL 107 Query: 166 LIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNT 225 L F S + + VLL + L +++W RT + A R DN SL Sbjct: 108 LGLLLLFGISGT---LSIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMARSLGI 164 Query: 226 TIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGGMT 279 + ++ +S+A + GA +A + +M +I ++ VI+GG Sbjct: 165 NVDRTRILGLVISNALAALGGALYAQYQGFADVNM-GIGTGVIGLAAVIIGGAI 217 >gnl|CDD|30905 COG0559, LivH, Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism]. Length = 297 Score = 52.1 bits (125), Expect = 3e-07 Identities = 73/300 (24%), Positives = 126/300 (42%), Gaps = 29/300 (9%) Query: 48 IYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYG----LSIWLLIPVSAMIS 103 IY + A GL++V G L +++ + +GAY+ + + G L + L +P++ I+ Sbjct: 19 IYALLALGLTLVYGVLRVINFAHGEFFMLGAYAAYLAVALLGPLGALGLLLALPLAFAIT 78 Query: 104 GACGMIMGLPSLKFRGDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTV 163 G+++ L+ A+A LI + IL G A + R L + Sbjct: 79 ALIGLLIERLVLRPLRGRPALALLIATLGVSLILQ-------GLARLIFGPRPVGLPPAL 131 Query: 164 RSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSL 223 +RF V + +++ L + L LRRT + A R + +N+K L Sbjct: 132 SGSVRFL----GGVTLPTYRLFIIAVSLALLLGLWLLLRRTRLGRALRAVAENRKMAALL 187 Query: 224 NTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGGMTSLSK 283 + FA+ A G+AG A +SP M F + + V+LGG+ S+ Sbjct: 188 GINVERVIALTFALGGALAGLAGV-LLAPIYTVSPYM-GFLYGLKAFAAVVLGGLGSI-P 244 Query: 284 IAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRSHSLLRLR 343 A +L+G+ E ++ YF S K +F + L LV+L+R L + Sbjct: 245 GAVLGGLLLGLAES--LVSAKYFGSEYKDVVAF---------LLLILVLLVRPQGLFGRK 293 >gnl|CDD|31365 COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]. Length = 316 Score = 46.7 bits (111), Expect = 1e-05 Identities = 61/283 (21%), Positives = 114/283 (40%), Gaps = 24/283 (8%) Query: 14 ILCLLAVVYPLLLFLFLGATKSQKYIDSMGIQILIYVMFAWGLSIVVGSLGL-LSLNCVI 72 +L L ++ + + S + ++ Q I + A G++ V+ + G+ LS+ V+ Sbjct: 13 LLLALVLLVLVFSLISPPGFLSLSNLLNILRQAAILGILALGMTFVIITGGIDLSVGSVV 72 Query: 73 AYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLKFRGDYLAIATLIMSEI 132 A A + +L + GL I L + + + G+I GL + R IATL I Sbjct: 73 ALA-AVVAASLLAAGGGLPILLALLAALAVGALIGLINGLLVARLRIPPF-IATLGTMFI 130 Query: 133 FQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCF 192 + + + +T G+ I + D +LG+ R P +I Sbjct: 131 LRGLAL---LLTGGRP-ISLPDAFAWLGSG-----RILGIPVPVII-----------FIV 170 Query: 193 LSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAAS 252 ++A L LRRT + + N++A + K++A+ +S +AG AA Sbjct: 171 VAALFWLLLRRTRFGRSIYAVGGNEEAARLSGIPVRRVKIAAYVLSGLLAALAGILLAAR 230 Query: 253 RDRISPDMFKFSENIIVISIVILGGMTSLSKIAKATAILIGVV 295 P+ E + I+ V++GG + L+G + Sbjct: 231 LGSAQPNAGVGYE-LDAIAAVVIGGTSLAGGRGSVIGTLLGAL 272 >gnl|CDD|119321 cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.. Length = 263 Score = 45.1 bits (108), Expect = 3e-05 Identities = 48/210 (22%), Positives = 74/210 (35%), Gaps = 25/210 (11%) Query: 75 AIGAYSYVILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLKFRGDYLAIATLIMSEIFQ 134 A+ A +L GL I L I + + G++ GL R I TL I + Sbjct: 29 ALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPF-IVTLGTMFILR 87 Query: 135 NILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLS 194 + + IT G+ + F P +I L + + Sbjct: 88 GLALL---ITGGRPISGLPPLFSFFLGG----GLILGIPVPVLI--------ALAVALV- 131 Query: 195 ASIILWLRRTAISNAWRTIRDNQKA--FFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAAS 252 LRRT + N +A +N + K+ A+ +S G+AG AA Sbjct: 132 --AWFLLRRTRFGRYLYAVGGNPEAARLSGINVRRV--KILAYVLSGLLAGLAGILLAAR 187 Query: 253 RDRISPDMFKFSENIIVISIVILGGMTSLS 282 P E + I+ V+LGG TSL+ Sbjct: 188 LGSAQPTAGNGYE-LDAIAAVVLGG-TSLT 215 >gnl|CDD|33877 COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]. Length = 293 Score = 33.6 bits (77), Expect = 0.078 Identities = 48/208 (23%), Positives = 85/208 (40%), Gaps = 20/208 (9%) Query: 45 QILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISG 104 Q LI+ A G+ I L L ++ +GA L + G++ +L V+ + Sbjct: 12 QGLIFAFVALGVYISFRILNFPDLTVDGSFPLGAAVAATLIA-AGVNPFLATLVAMVAGA 70 Query: 105 ACGMIMGLPSLKFRGDYLAIATLIMSEIFQ-NILIKWKPITNGKAGIYVADRLYFLGT-T 162 A GMI GL ++KF+ L L M ++ N+ I +P L LG T Sbjct: 71 AAGMITGLLNVKFKILTLLAGILTMIALYSVNLRIMGRP------------NLPLLGEDT 118 Query: 163 VRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFS 222 + + + F + I + V++ + +++ +T + A R DN + Sbjct: 119 IFTPLPFDGLLDYLLRPLILVVLVII-----AKLLVIRFLKTDLGLALRATGDNPDMARA 173 Query: 223 LNTTIIFAKLSAFAVSSAFIGMAGAFFA 250 + A+S+A + +AGA FA Sbjct: 174 QGINTERYTILGLALSNALVALAGALFA 201 >gnl|CDD|31277 COG1079, COG1079, Uncharacterized ABC-type transport system, permease component [General function prediction only]. Length = 304 Score = 31.6 bits (72), Expect = 0.29 Identities = 29/177 (16%), Positives = 60/177 (33%), Gaps = 12/177 (6%) Query: 76 IGAYSYVILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLKFRGDYLAIATLIMSEIFQN 135 +GA+S + S WL + +A++ G++ ++K R + + + Sbjct: 47 LGAFSGALFAY-GTGSPWLGLLAAALVGALFGLLHAFLTIKLRANQIISGLALNLLASGL 105 Query: 136 ILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSA 195 + I + + L F + Y+ + + L Sbjct: 106 TAFLGQSIFGQPGTTFQPIDIPGLSDIPVIGPALFGQS--------PLVYLAILLVALVW 157 Query: 196 SIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAAS 252 L RT R + +N A ++ + + A VS A G+AGA+ + + Sbjct: 158 ---YVLYRTRFGLRLRAVGENPAAADAMGINVYRYRYLAVLVSGALAGLAGAYLSLA 211 >gnl|CDD|35697 KOG0476, KOG0476, KOG0476, Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]. Length = 931 Score = 30.7 bits (69), Expect = 0.62 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 9/94 (9%) Query: 161 TTVRSLIR-FFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQ-- 217 T+ +L + FR F + E+ + +L +C L ++ ++L R + +R N+ Sbjct: 308 VTITALYQTSFRPDFPFDVQELPFFALLGLLCGLLGALFVYLHRRIVL----FLRKNRYA 363 Query: 218 KAFFSLNTTIIFAKLSAFAVSS-AFIGMAGAFFA 250 K F + +++ A SS F G F A Sbjct: 364 KKLFQ-KSRLLYPAFIALVFSSLTFPPGLGQFLA 396 >gnl|CDD|38968 KOG3764, KOG3764, KOG3764, Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]. Length = 464 Score = 27.9 bits (62), Expect = 4.7 Identities = 13/46 (28%), Positives = 18/46 (39%) Query: 61 GSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGAC 106 +GL L ++YAIG + L +Y WLL G Sbjct: 306 WEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVS 351 >gnl|CDD|34598 COG4993, Gcd, Glucose dehydrogenase [Carbohydrate transport and metabolism]. Length = 773 Score = 27.6 bits (61), Expect = 5.6 Identities = 7/22 (31%), Positives = 14/22 (63%) Query: 184 YYVLLGMCFLSASIILWLRRTA 205 YY++ G+ L ++ +L R+ A Sbjct: 32 YYLIAGLVLLLSAWLLLRRKRA 53 >gnl|CDD|36634 KOG1420, KOG1420, KOG1420, Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism, Signal transduction mechanisms]. Length = 1103 Score = 27.3 bits (60), Expect = 5.6 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%) Query: 150 IYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSA 195 I +D+L+F + S++ FF P SFV I++ LG+ FL A Sbjct: 184 IAASDKLWFW-LEMYSVVDFFTIPPSFV--SIYLNRSWLGLRFLRA 226 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.333 0.144 0.433 Gapped Lambda K H 0.267 0.0653 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,305,336 Number of extensions: 244733 Number of successful extensions: 1404 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1356 Number of HSP's successfully gapped: 157 Length of query: 351 Length of database: 6,263,737 Length adjustment: 95 Effective length of query: 256 Effective length of database: 4,210,882 Effective search space: 1077985792 Effective search space used: 1077985792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 58 (26.3 bits)