RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780896|ref|YP_003065309.1| ABC transporter membrane
spanning protein (branched chain amino acid) [Candidatus Liberibacter
asiaticus str. psy62]
(351 letters)
>gnl|CDD|119323 cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of
Escherichia coli LivM and related proteins. LivM is one
of two TMs of the E. coli LIV-1/LS transporter, a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of
branched-chain amino acids (AAs). These types of
transporters generally bind type 1 PBPs. PBP-dependent
ABC transporters consist of a PBP, two TMs, and two
cytoplasmic ABCs, and are mainly involved in importing
solutes from the environment. The solute is captured by
the PBP, which delivers it to a gated translocation
pathway formed by the two TMs. The two ABCs bind and
hydrolyze ATP and drive the transport reaction. E. coli
LivM forms a heterodimer with another TM, LivH, to
generate the transmembrane pore. LivH is not included in
this subgroup. The LIV-1/LS transporter is comprised of
two TMs (LivM and LivH), two ABCs (LivG and LivF), and
one of two alternative PBPs, LivJ (LIV-BP) or LivK
(LS-BP). In addition to transporting branched-chain AAs
including leucine, isoleucine and valine, the E. coli
LIV-1/LS transporter is involved in the uptake of the
aromatic AA, phenylalanine..
Length = 268
Score = 151 bits (385), Expect = 2e-37
Identities = 83/252 (32%), Positives = 136/252 (53%), Gaps = 14/252 (5%)
Query: 46 ILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGA 105
ILIY + A GL++++G G LSL + IGAY+ +L +R GL WL + + +++
Sbjct: 1 ILIYAILALGLNLLLGYAGQLSLGHAAFFGIGAYTAALLATRLGLPFWLALLAAGLVAAL 60
Query: 106 CGMIMGLPSLKFRGDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRS 165
G+++GLP+L+ RG Y AIATL +EI + + + W +T G G+ S
Sbjct: 61 VGLLLGLPALRLRGVYFAIATLAFAEIVRLLALNWSSLTGGSNGL--------------S 106
Query: 166 LIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNT 225
I + + YY++L + L ++ L R+ A R IR+N+ A +L
Sbjct: 107 GIPPPLLGGLLLSSPLAFYYLVLAVLLLVLLLLRRLVRSPFGRALRAIRENEVAAEALGI 166
Query: 226 TIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGGMTSLSKIA 285
+ KL AFA+S+A G+AGA +A +SP+ F F+ +I ++ +V+LGG+ SL
Sbjct: 167 NVTRYKLLAFALSAALAGLAGALYAHYLGFVSPESFGFALSIELLLMVVLGGLGSLLGPV 226
Query: 286 KATAILIGVVEL 297
A+L+ + EL
Sbjct: 227 LGAALLVLLPEL 238
>gnl|CDD|33917 COG4177, LivM, ABC-type branched-chain amino acid transport system,
permease component [Amino acid transport and
metabolism].
Length = 314
Score = 129 bits (325), Expect = 2e-30
Identities = 91/282 (32%), Positives = 150/282 (53%), Gaps = 17/282 (6%)
Query: 18 LAVVYPLLLFLFLGATKSQKYIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIG 77
L ++ L+L L S + ++ ILIY + A GL++VVG GLLSL + +G
Sbjct: 7 LLLILALVLLLIAPLLLSLPFYLNLLTLILIYAILALGLNLVVGYAGLLSLGHAAFFGLG 66
Query: 78 AYSYVILGSRY--GLSIWLLIPVSAMISGACGMIMGLPSLKFRGDYLAIATLIMSEIFQN 135
AY+ +L +R GLS WL + + +++ G+++GLP+L+ RGDYLAI TL EIF+
Sbjct: 67 AYTAALLLARLLGGLSFWLALLLGGLVAALLGLLLGLPALRLRGDYLAIVTLAFGEIFRI 126
Query: 136 ILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSA 195
+L+ +T G+ G+ R LG F +YY+ L + L+
Sbjct: 127 LLLNATELTGGENGLSGIPRPTLLG---------------FPSRARGLYYLALLLLLLTL 171
Query: 196 SIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDR 255
++ L R+ A R IR+++ A +L + KL AF +S+A G+AGA +A
Sbjct: 172 LVLERLVRSPFGRALRAIREDEIAARALGINVTRYKLLAFVISAAIAGIAGALYALYLGF 231
Query: 256 ISPDMFKFSENIIVISIVILGGMTSLSKIAKATAILIGVVEL 297
+SP+ F F+ +I V+++V+LGG +L +++ + EL
Sbjct: 232 VSPESFSFTLSIEVLAMVVLGGAGTLFGALLGAVLVVLLKEL 273
>gnl|CDD|111540 pfam02653, BPD_transp_2, Branched-chain amino acid transport system
/ permease component. This is a large family mainly
comprising high-affinity branched-chain amino acid
transporter proteins such as E. coli LivH and LivM, both
of which are form the LIV-I transport system. Also found
with in this family are proteins from the galactose
transport system permease and a ribose transport system.
Length = 267
Score = 69.9 bits (172), Expect = 1e-12
Identities = 64/259 (24%), Positives = 112/259 (43%), Gaps = 18/259 (6%)
Query: 38 YIDSMGIQILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIP 97
+ ++ Q I + A GL++V G+++L A+GAY +L + G ++WL +
Sbjct: 1 NLLNILTQAAILGIAALGLTLVF-IAGVINLGVGGFMALGAYVAALLLALGGSNLWLALL 59
Query: 98 VSAMISGACGMIMGLPSLKFRGDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLY 157
++ A G++ GL ++ + + + L+ + L I G AG
Sbjct: 60 AGLLVGAAVGLLNGLLVVRLKVPEVIVTLLLNFILRGLTLFLLTGILGGPAG-------- 111
Query: 158 FLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQ 217
+T+ L+ F SF IF+ +L L+ + L LRRT A R + +N
Sbjct: 112 --TSTIVDLLGFPGLFLSFGFGVIFLLALL-----LALLVWLLLRRTRFGRALRAVGENP 164
Query: 218 KAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGG 277
+A + K+ AF +S A G+AGA S P+ I+ V+LGG
Sbjct: 165 RAARYAGINVKRTKILAFVLSGALAGLAGALLVLSTGSADPNA-GLGLGFDAIAAVVLGG 223
Query: 278 MTSLSKIAKATAILIGVVE 296
S A++IG+++
Sbjct: 224 AGSPIGAI-VGALIIGLLQ 241
>gnl|CDD|119324 cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of
Escherichia coli LivH and related proteins. LivH is one
of two TMs of the E. coli LIV-1/LS transporter, a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of
branched-chain amino acids (AAs). These types of
transporters generally bind type 1 PBPs. PBP-dependent
ABC transporters consist of a PBP, two TMs, and two
cytoplasmic ABCs, and are mainly involved in importing
solutes from the environment. The solute is captured by
the PBP, which delivers it to a gated translocation
pathway formed by the two TMs. The two ABCs bind and
hydrolyze ATP and drive the transport reaction. E. coli
LivH forms a heterodimer with another TM, LivM, to
generate the transmembrane pore. LivM is not included in
this subgroup. The LIV-1/LS transporter is comprised of
two TMs (LivM and LivH), two ABCs (LivG and LivF), and
one of two alternative PBPs, LivJ (LIV-BP) or LivK
(LS-BP). In addition to transporting branched-chain AAs
including leucine, isoleucine and valine, the E. coli
LIV-1/LS transporter is involved in the uptake of the
aromatic AA, phenylalanine..
Length = 272
Score = 58.2 bits (142), Expect = 3e-09
Identities = 62/255 (24%), Positives = 111/255 (43%), Gaps = 27/255 (10%)
Query: 48 IYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACG 107
IY + A GL+++ G G+++ Y +GAY L GL WL + ++ +++ G
Sbjct: 7 IYALIALGLTLIFGVTGVINFAHGEFYMLGAYVAYTLLVALGLPFWLALLLALLVAALLG 66
Query: 108 MIMGLPSLK-FRGD---YLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTV 163
+++ L+ RG L I + + Q +L+ + ++ + G T+
Sbjct: 67 VLLERLVLRPLRGAPLLTLLITFGGLLILLQGLLLIFGGDPRVPPPPLLSGSVELGGVTI 126
Query: 164 RSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSL 223
Y +F ++ L A++ L+LRRT + A R + N +A L
Sbjct: 127 PP-------------YRLF---IIAVALVLLAALYLFLRRTRLGRAIRAVAQNPEAARLL 170
Query: 224 --NTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGGMTSL 281
N +FA FA+ +A G+AG A +SP M + + V+LGG+ S+
Sbjct: 171 GINVRRVFA--LTFALGAALAGLAGVLL-APITGVSPTM-GLLLLLKAFAAVVLGGLGSI 226
Query: 282 SKIAKATAILIGVVE 296
A +L+G+ E
Sbjct: 227 -PGAVVGGLLLGLAE 240
>gnl|CDD|119320 cd06574, TM_PBP1_branched-chain-AA_like, Transmembrane subunit (TM)
of Periplasmic Binding Protein (PBP)-dependent
ATP-Binding Cassette (ABC) transporters which are
involved in the uptake of branched-chain amino acids
(AAs), as well as TMs of transporters involved in the
uptake of monosaccharides including ribose, galactose,
and arabinose. These transporters generally bind type 1
PBPs. PBP-dependent ABC transporters consist of a PBP,
two TMs, and two cytoplasmic ABCs, and are mainly
involved in importing solutes from the environment. The
solute is captured by the PBP which delivers it to a
gated translocation pathway formed by the two TMs. The
two ABCs bind and hydrolyze ATP and drive the transport
reaction. This group includes Escherichia coli LivM and
LivH, two TMs which heterodimerize to form the
translocation pathway of the E. coli branched-chain AA
LIV-1/LS transporter. This transporter is comprised of
two TMs (LivM and LivH), two ABCs (LivG and LivF), and
one of two alternative PBPs, LivJ (LIV-BP) and LivK
(LS-BP). In addition to transporting branched-chain AAs
including leucine, isoleucine and valine, the E. coli
LIV-1/LS transporter is involved in the uptake of the
aromatic AA, phenylalanine. Included in this group are
proteins from transport systems that contain a single TM
which homodimerizes to generate the transmembrane pore;
for example E. coli RbsC, AlsC, and MglC, the TMs of the
high affinity ribose transporter, the D-allose
transporter and the galactose transporter, respectively.
The D-allose transporter may also to be involved in low
affinity ribose transport..
Length = 266
Score = 58.1 bits (141), Expect = 4e-09
Identities = 57/234 (24%), Positives = 94/234 (40%), Gaps = 19/234 (8%)
Query: 47 LIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGAC 106
LIY + A G+ IV LG L ++ +GA IL G + WL + + + A
Sbjct: 2 LIYAILALGVYIVFRILGFPDLTVDGSFPLGAAVAAILIV-AGYNPWLALIAAILAGAAA 60
Query: 107 GMIMGLPSLKFRGDYLAIATLIMSEIFQ-NILIKWKPITNGKAGIYVADRLYFLGTTVRS 165
G++ G + + + L LIM ++ N+ I P LGT
Sbjct: 61 GLVTGFLHTRLKINGLLAGILIMIGLYSINLRIMGGPNIP-------------LGTRDTL 107
Query: 166 LIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNT 225
L F S + + VLL + L +++W RT + A R DN SL
Sbjct: 108 LGLLLLFGISGT---LSIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMARSLGI 164
Query: 226 TIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGGMT 279
+ ++ +S+A + GA +A + +M +I ++ VI+GG
Sbjct: 165 NVDRTRILGLVISNALAALGGALYAQYQGFADVNM-GIGTGVIGLAAVIIGGAI 217
>gnl|CDD|30905 COG0559, LivH, Branched-chain amino acid ABC-type transport system,
permease components [Amino acid transport and
metabolism].
Length = 297
Score = 52.1 bits (125), Expect = 3e-07
Identities = 73/300 (24%), Positives = 126/300 (42%), Gaps = 29/300 (9%)
Query: 48 IYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYG----LSIWLLIPVSAMIS 103
IY + A GL++V G L +++ + +GAY+ + + G L + L +P++ I+
Sbjct: 19 IYALLALGLTLVYGVLRVINFAHGEFFMLGAYAAYLAVALLGPLGALGLLLALPLAFAIT 78
Query: 104 GACGMIMGLPSLKFRGDYLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTV 163
G+++ L+ A+A LI + IL G A + R L +
Sbjct: 79 ALIGLLIERLVLRPLRGRPALALLIATLGVSLILQ-------GLARLIFGPRPVGLPPAL 131
Query: 164 RSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSL 223
+RF V + +++ L + L LRRT + A R + +N+K L
Sbjct: 132 SGSVRFL----GGVTLPTYRLFIIAVSLALLLGLWLLLRRTRLGRALRAVAENRKMAALL 187
Query: 224 NTTIIFAKLSAFAVSSAFIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGGMTSLSK 283
+ FA+ A G+AG A +SP M F + + V+LGG+ S+
Sbjct: 188 GINVERVIALTFALGGALAGLAGV-LLAPIYTVSPYM-GFLYGLKAFAAVVLGGLGSI-P 244
Query: 284 IAKATAILIGVVELCCGMNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRSHSLLRLR 343
A +L+G+ E ++ YF S K +F + L LV+L+R L +
Sbjct: 245 GAVLGGLLLGLAES--LVSAKYFGSEYKDVVAF---------LLLILVLLVRPQGLFGRK 293
>gnl|CDD|31365 COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type
transport systems, permease components [Carbohydrate
transport and metabolism].
Length = 316
Score = 46.7 bits (111), Expect = 1e-05
Identities = 61/283 (21%), Positives = 114/283 (40%), Gaps = 24/283 (8%)
Query: 14 ILCLLAVVYPLLLFLFLGATKSQKYIDSMGIQILIYVMFAWGLSIVVGSLGL-LSLNCVI 72
+L L ++ + + S + ++ Q I + A G++ V+ + G+ LS+ V+
Sbjct: 13 LLLALVLLVLVFSLISPPGFLSLSNLLNILRQAAILGILALGMTFVIITGGIDLSVGSVV 72
Query: 73 AYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLKFRGDYLAIATLIMSEI 132
A A + +L + GL I L + + + G+I GL + R IATL I
Sbjct: 73 ALA-AVVAASLLAAGGGLPILLALLAALAVGALIGLINGLLVARLRIPPF-IATLGTMFI 130
Query: 133 FQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCF 192
+ + + +T G+ I + D +LG+ R P +I
Sbjct: 131 LRGLAL---LLTGGRP-ISLPDAFAWLGSG-----RILGIPVPVII-----------FIV 170
Query: 193 LSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAAS 252
++A L LRRT + + N++A + K++A+ +S +AG AA
Sbjct: 171 VAALFWLLLRRTRFGRSIYAVGGNEEAARLSGIPVRRVKIAAYVLSGLLAALAGILLAAR 230
Query: 253 RDRISPDMFKFSENIIVISIVILGGMTSLSKIAKATAILIGVV 295
P+ E + I+ V++GG + L+G +
Sbjct: 231 LGSAQPNAGVGYE-LDAIAAVVIGGTSLAGGRGSVIGTLLGAL 272
>gnl|CDD|119321 cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of
Escherichia coli AraH and related proteins. E. coli AraH
is the TM of a Periplasmic Binding Protein
(PBP)-dependent ATP-Binding Cassette (ABC) transporter
involved in the uptake of the monosaccharide arabinose.
This group also contains E. coli RbsC, AlsC, and MglC,
which are TMs of other monosaccharide transporters, the
ribose transporter, the D-allose transporter and the
galactose transporter, respectively. The D-allose
transporter may also be involved in low affinity ribose
transport. These transporters generally bind type 1
PBPs. PBP-dependent ABC transporters consist of a PBP,
two TMs, and two cytoplasmic ABCs, and are mainly
involved in importing solutes from the environment. The
solute is captured by the PBP, which delivers it to a
gated translocation pathway formed by the two TMs. The
two ABCs bind and hydrolyze ATP and drive the transport
reaction. Proteins in this subgroup have a single TM
which homodimerizes to generate the transmembrane pore..
Length = 263
Score = 45.1 bits (108), Expect = 3e-05
Identities = 48/210 (22%), Positives = 74/210 (35%), Gaps = 25/210 (11%)
Query: 75 AIGAYSYVILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLKFRGDYLAIATLIMSEIFQ 134
A+ A +L GL I L I + + G++ GL R I TL I +
Sbjct: 29 ALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPF-IVTLGTMFILR 87
Query: 135 NILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLS 194
+ + IT G+ + F P +I L + +
Sbjct: 88 GLALL---ITGGRPISGLPPLFSFFLGG----GLILGIPVPVLI--------ALAVALV- 131
Query: 195 ASIILWLRRTAISNAWRTIRDNQKA--FFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAAS 252
LRRT + N +A +N + K+ A+ +S G+AG AA
Sbjct: 132 --AWFLLRRTRFGRYLYAVGGNPEAARLSGINVRRV--KILAYVLSGLLAGLAGILLAAR 187
Query: 253 RDRISPDMFKFSENIIVISIVILGGMTSLS 282
P E + I+ V+LGG TSL+
Sbjct: 188 LGSAQPTAGNGYE-LDAIAAVVLGG-TSLT 215
>gnl|CDD|33877 COG4120, COG4120, ABC-type uncharacterized transport system,
permease component [General function prediction only].
Length = 293
Score = 33.6 bits (77), Expect = 0.078
Identities = 48/208 (23%), Positives = 85/208 (40%), Gaps = 20/208 (9%)
Query: 45 QILIYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISG 104
Q LI+ A G+ I L L ++ +GA L + G++ +L V+ +
Sbjct: 12 QGLIFAFVALGVYISFRILNFPDLTVDGSFPLGAAVAATLIA-AGVNPFLATLVAMVAGA 70
Query: 105 ACGMIMGLPSLKFRGDYLAIATLIMSEIFQ-NILIKWKPITNGKAGIYVADRLYFLGT-T 162
A GMI GL ++KF+ L L M ++ N+ I +P L LG T
Sbjct: 71 AAGMITGLLNVKFKILTLLAGILTMIALYSVNLRIMGRP------------NLPLLGEDT 118
Query: 163 VRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFS 222
+ + + F + I + V++ + +++ +T + A R DN +
Sbjct: 119 IFTPLPFDGLLDYLLRPLILVVLVII-----AKLLVIRFLKTDLGLALRATGDNPDMARA 173
Query: 223 LNTTIIFAKLSAFAVSSAFIGMAGAFFA 250
+ A+S+A + +AGA FA
Sbjct: 174 QGINTERYTILGLALSNALVALAGALFA 201
>gnl|CDD|31277 COG1079, COG1079, Uncharacterized ABC-type transport system,
permease component [General function prediction only].
Length = 304
Score = 31.6 bits (72), Expect = 0.29
Identities = 29/177 (16%), Positives = 60/177 (33%), Gaps = 12/177 (6%)
Query: 76 IGAYSYVILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLKFRGDYLAIATLIMSEIFQN 135
+GA+S + S WL + +A++ G++ ++K R + + +
Sbjct: 47 LGAFSGALFAY-GTGSPWLGLLAAALVGALFGLLHAFLTIKLRANQIISGLALNLLASGL 105
Query: 136 ILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSA 195
+ I + + L F + Y+ + + L
Sbjct: 106 TAFLGQSIFGQPGTTFQPIDIPGLSDIPVIGPALFGQS--------PLVYLAILLVALVW 157
Query: 196 SIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFIGMAGAFFAAS 252
L RT R + +N A ++ + + A VS A G+AGA+ + +
Sbjct: 158 ---YVLYRTRFGLRLRAVGENPAAADAMGINVYRYRYLAVLVSGALAGLAGAYLSLA 211
>gnl|CDD|35697 KOG0476, KOG0476, KOG0476, Cl- channel CLC-2 and related proteins
(CLC superfamily) [Inorganic ion transport and
metabolism].
Length = 931
Score = 30.7 bits (69), Expect = 0.62
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 161 TTVRSLIR-FFRFPSSFVIYEIFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQ-- 217
T+ +L + FR F + E+ + +L +C L ++ ++L R + +R N+
Sbjct: 308 VTITALYQTSFRPDFPFDVQELPFFALLGLLCGLLGALFVYLHRRIVL----FLRKNRYA 363
Query: 218 KAFFSLNTTIIFAKLSAFAVSS-AFIGMAGAFFA 250
K F + +++ A SS F G F A
Sbjct: 364 KKLFQ-KSRLLYPAFIALVFSSLTFPPGLGQFLA 396
>gnl|CDD|38968 KOG3764, KOG3764, KOG3764, Vesicular amine transporter
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 464
Score = 27.9 bits (62), Expect = 4.7
Identities = 13/46 (28%), Positives = 18/46 (39%)
Query: 61 GSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGAC 106
+GL L ++YAIG + L +Y WLL G
Sbjct: 306 WEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVS 351
>gnl|CDD|34598 COG4993, Gcd, Glucose dehydrogenase [Carbohydrate transport and
metabolism].
Length = 773
Score = 27.6 bits (61), Expect = 5.6
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 184 YYVLLGMCFLSASIILWLRRTA 205
YY++ G+ L ++ +L R+ A
Sbjct: 32 YYLIAGLVLLLSAWLLLRRKRA 53
>gnl|CDD|36634 KOG1420, KOG1420, KOG1420, Ca2+-activated K+ channel Slowpoke,
alpha subunit [Inorganic ion transport and metabolism,
Signal transduction mechanisms].
Length = 1103
Score = 27.3 bits (60), Expect = 5.6
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 150 IYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGMCFLSA 195
I +D+L+F + S++ FF P SFV I++ LG+ FL A
Sbjct: 184 IAASDKLWFW-LEMYSVVDFFTIPPSFV--SIYLNRSWLGLRFLRA 226
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.333 0.144 0.433
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,305,336
Number of extensions: 244733
Number of successful extensions: 1404
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1356
Number of HSP's successfully gapped: 157
Length of query: 351
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 256
Effective length of database: 4,210,882
Effective search space: 1077985792
Effective search space used: 1077985792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 58 (26.3 bits)