RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780896|ref|YP_003065309.1| ABC transporter membrane
spanning protein (branched chain amino acid) [Candidatus Liberibacter
asiaticus str. psy62]
(351 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 37.6 bits (87), Expect = 0.004
Identities = 22/148 (14%), Positives = 42/148 (28%), Gaps = 74/148 (50%)
Query: 31 GATKS--QKYIDSMGIQIL-----IYVMFAWGLSIVVGSLGLLSLNCVIAYAIGAYSYVI 83
T+ Q Y++ L + + SL +N GA + V+
Sbjct: 343 NLTQEQVQDYVNKTN-SHLPAGKQVEI-----------SL----VN-------GAKNLVV 379
Query: 84 LG---SRYGLSIWL--------------------------LIPVSAMISGACGMIMGLPS 114
G S YGL++ L +PV++ P
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS------------P- 426
Query: 115 LKFRGDYLAIATLIMSEIFQNILIKWKP 142
F L A+ ++++ + +
Sbjct: 427 --FHSHLLVPASDLINKDLVKNNVSFNA 452
Score = 35.3 bits (81), Expect = 0.019
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 17/70 (24%)
Query: 40 DSMGIQILIYVMFAWGLSIVVG---------SLGLLSLN---CVIAYAIGAYSYVI--LG 85
D M I+ L+ V+F G+++ V + G++++N +++ A YV+ +G
Sbjct: 1775 DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVG 1834
Query: 86 SRYGLSIWLL 95
R G WL+
Sbjct: 1835 KRTG---WLV 1841
Score = 33.4 bits (76), Expect = 0.075
Identities = 52/324 (16%), Positives = 90/324 (27%), Gaps = 129/324 (39%)
Query: 25 LLFLFLGATKSQKYIDSMG--IQILIYVM------FAWGLSI--VVGSL------GLLSL 68
L+ FLG S +G Q+L + + G I + L L+
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 69 NCVI-AYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACG---MIMGLPSLKFRG----- 119
+I Y + ++ + SA+ ++ + F G
Sbjct: 120 KELIKNYI---TARIMAKRPFDK-----KSNSALFRAVGEGNAQLVAI----FGGQGNTD 167
Query: 120 DY---LAIATLIMSEIFQNILIKWKPITNGKAGIY---VADRLYFLGTTVRSLIRFFRFP 173
DY L +++Q Y V D + F T+ LI R
Sbjct: 168 DYFEELR-------DLYQ---------------TYHVLVGDLIKFSAETLSELI---RTT 202
Query: 174 SSFVIYEIFMYYVLLGMCFLSASIILWLRR------------TAISNAWRTIRDNQKAFF 221
++ G+ L WL IS
Sbjct: 203 LDA----EKVFT--QGLNILE-----WLENPSNTPDKDYLLSIPIS-------------C 238
Query: 222 SLNTTIIFAKLSAFAVSSAFIGMA-GAFFAASRDRISPDMFKF-----SENIIVISIVIL 275
L I +L+ + V++ +G G R + S+ ++ ++ I
Sbjct: 239 PL---IGVIQLAHYVVTAKLLGFTPGEL----RSYLK------GATGHSQGLVT-AVAIA 284
Query: 276 GGMT--SLSKIA-KATAIL--IGV 294
+ S KA +L IGV
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGV 308
Score = 31.5 bits (71), Expect = 0.30
Identities = 62/332 (18%), Positives = 96/332 (28%), Gaps = 146/332 (43%)
Query: 28 LFLGAT-KSQKYIDSMGIQILIYVMFA----WGLSIVVGSLGLLSLNCV-IAYAIGAYSY 81
GAT SQ G+ + V A W S + + + + IG Y
Sbjct: 266 YLKGATGHSQ------GL--VTAVAIAETDSWE------SFFVSVRKAITVLFFIGVRCY 311
Query: 82 VILGSRYG-LSIWLLIPVSAMI--SGACGMIMGLPS--LKFRGDYLAIATLIMSEIFQNI 136
Y S+ +++ S G+PS L L + Q+
Sbjct: 312 ----EAYPNTSLP-----PSILEDSLENNE--GVPSPMLSISN--LTQEQV------QDY 352
Query: 137 LIKWKPITNGKAGIYVAD--RLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYV------LL 188
+ K TN ++ ++ SL+ + V V L
Sbjct: 353 VNK----TNS----HLPAGKQVEI------SLVNG---AKNLV--------VSGPPQSLY 387
Query: 189 GMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTT-IIFA--KLS---AF-AVSSAF 241
G+ L LR+ KA L+ + I F+ KL F V+S F
Sbjct: 388 GLN-------LTLRK-------------AKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 242 ---------------IGMAGAFFAASRDRISP--------DMFKFSENIIVISIVILGGM 278
+ F A +I P D+ S +I IV +
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQI-PVYDTFDGSDLRVLSGSISE-RIVDC--I 483
Query: 279 TSLS---KIA---KATAIL---------IGVV 295
L + KAT IL +GV+
Sbjct: 484 IRLPVKWETTTQFKATHILDFGPGGASGLGVL 515
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between
N-terminal and C- terminal domain of kinase, cell
cycle/transferase complex; HET: AP9; 2.80A {Herpesvirus
saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A*
1xo2_A* 1bu2_A
Length = 254
Score = 31.6 bits (71), Expect = 0.28
Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 2/95 (2%)
Query: 259 DMFKFSENIIVISIVILGGMTSLSKIAKATAILIGVVEL--CCGMNFYYFNSLLKFDCSF 316
+ F+ +++ +S+ IL + K T IG + + ++ K
Sbjct: 64 ESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLS 123
Query: 317 NMRHTTLMVIALFLVILMRSHSLLRLRTPSNFLER 351
T L +I IL ++FL
Sbjct: 124 CDCFTNLELINQEKDILEALKWDTEAVLATDFLIP 158
>2c9k_A Pesticidal crystal protein CRY4AA; toxin, insect toxin,
bioinsecticicide, pore formation, receptor recognition,
sporulation; 2.8A {Bacillus thuringiensis}
Length = 612
Score = 30.4 bits (68), Expect = 0.64
Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 1/102 (0%)
Query: 131 EIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYEIFMYYVLLGM 190
+ N L W+ N + V ++ + +++I + Y +L+
Sbjct: 82 STYHNHLKTWENNPNPQNTQDVRTQIQLVHYHFQNVIPELVNSCPPNPSDCDYYNILVLS 141
Query: 191 CF-LSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAK 231
+ +A++ L + A+ + Q + T I
Sbjct: 142 SYAQAANLHLTVLNQAVKFEAYLKNNRQFDYLEPLPTAIDYY 183
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation,
ATP- binding, cell division, disease mutation, kinase,
nucleotide-binding; 3.00A {Homo sapiens}
Length = 306
Score = 30.1 bits (67), Expect = 0.74
Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 2/95 (2%)
Query: 259 DMFKFSENIIVISIVILGGMTSLSKIAKATAILIGVV--ELCCGMNFYYFNSLLKFDCSF 316
+ + E + +++ L S KA L+G V L + ++ K
Sbjct: 83 EEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYT 142
Query: 317 NMRHTTLMVIALFLVILMRSHSLLRLRTPSNFLER 351
+ + + +++L + L +FL
Sbjct: 143 DHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAF 177
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.0 bits (66), Expect = 0.83
Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 5/19 (26%)
Query: 114 SLKFRGD----YLAI-ATL 127
SLK D LAI AT+
Sbjct: 28 SLKLYADDSAPALAIKATM 46
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase,
chromosomal rearrangement, ATP-binding, transferase,
polymorphism, cell division; 2.30A {Homo sapiens} PDB:
2w99_A 2w9f_A 2w9z_A
Length = 271
Score = 27.8 bits (61), Expect = 3.4
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 2/95 (2%)
Query: 259 DMFKFSENIIVISIVILGGMTSLSKIAKATAILIGVVEL--CCGMNFYYFNSLLKFDCSF 316
+ K E + +++ L SL + K+ L+G + M + K
Sbjct: 69 EEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYT 128
Query: 317 NMRHTTLMVIALFLVILMRSHSLLRLRTPSNFLER 351
+ ++ + L+++ + L TP +F+E
Sbjct: 129 DNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEH 163
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division),
ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear
protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP:
a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B*
1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B*
2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B*
1vyw_B* 2bkz_B* ...
Length = 260
Score = 27.4 bits (60), Expect = 5.2
Identities = 13/95 (13%), Positives = 34/95 (35%), Gaps = 2/95 (2%)
Query: 259 DMFKFSENIIVISIVILGGMTSLSKIAKATAILIGVVEL--CCGMNFYYFNSLLKFDCSF 316
+ +K + +++ + S + + L+G + Y + +F
Sbjct: 51 EEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYIT 110
Query: 317 NMRHTTLMVIALFLVILMRSHSLLRLRTPSNFLER 351
+ +T V+ + ++L L T + FL +
Sbjct: 111 DDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQ 145
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.333 0.144 0.433
Gapped
Lambda K H
0.267 0.0497 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,933,586
Number of extensions: 133894
Number of successful extensions: 476
Number of sequences better than 10.0: 1
Number of HSP's gapped: 468
Number of HSP's successfully gapped: 57
Length of query: 351
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 258
Effective length of database: 3,438,538
Effective search space: 887142804
Effective search space used: 887142804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 57 (26.3 bits)