RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780896|ref|YP_003065309.1| ABC transporter membrane spanning protein (branched chain amino acid) [Candidatus Liberibacter asiaticus str. psy62] (351 letters) >d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 103 Score = 25.5 bits (56), Expect = 6.7 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 14/36 (38%) Query: 164 RSLIRF--------------FRFPSSFVIYEIFMYY 185 R+LI+ FR +F +Y F YY Sbjct: 31 RTLIKLCQKYADYNKDDPQSFRLAPNFSLYPQFTYY 66 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.333 0.144 0.433 Gapped Lambda K H 0.267 0.0522 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,275,331 Number of extensions: 58486 Number of successful extensions: 167 Number of sequences better than 10.0: 1 Number of HSP's gapped: 167 Number of HSP's successfully gapped: 19 Length of query: 351 Length of database: 2,407,596 Length adjustment: 86 Effective length of query: 265 Effective length of database: 1,226,816 Effective search space: 325106240 Effective search space used: 325106240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 53 (24.7 bits)