RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780896|ref|YP_003065309.1| ABC transporter membrane
spanning protein (branched chain amino acid) [Candidatus Liberibacter
asiaticus str. psy62]
         (351 letters)



>d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 103

 Score = 25.5 bits (56), Expect = 6.7
 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 14/36 (38%)

Query: 164 RSLIRF--------------FRFPSSFVIYEIFMYY 185
           R+LI+               FR   +F +Y  F YY
Sbjct: 31  RTLIKLCQKYADYNKDDPQSFRLAPNFSLYPQFTYY 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.333    0.144    0.433 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,275,331
Number of extensions: 58486
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 19
Length of query: 351
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 265
Effective length of database: 1,226,816
Effective search space: 325106240
Effective search space used: 325106240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (24.7 bits)