BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780896|ref|YP_003065309.1| ABC transporter membrane
spanning protein (branched chain amino acid) [Candidatus Liberibacter
asiaticus str. psy62]
         (351 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780896|ref|YP_003065309.1| ABC transporter membrane spanning protein (branched chain amino
           acid) [Candidatus Liberibacter asiaticus str. psy62]
          Length = 351

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/351 (100%), Positives = 351/351 (100%)

Query: 1   MSIFSLRLNKYDKILCLLAVVYPLLLFLFLGATKSQKYIDSMGIQILIYVMFAWGLSIVV 60
           MSIFSLRLNKYDKILCLLAVVYPLLLFLFLGATKSQKYIDSMGIQILIYVMFAWGLSIVV
Sbjct: 1   MSIFSLRLNKYDKILCLLAVVYPLLLFLFLGATKSQKYIDSMGIQILIYVMFAWGLSIVV 60

Query: 61  GSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLKFRGD 120
           GSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLKFRGD
Sbjct: 61  GSLGLLSLNCVIAYAIGAYSYVILGSRYGLSIWLLIPVSAMISGACGMIMGLPSLKFRGD 120

Query: 121 YLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYE 180
           YLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYE
Sbjct: 121 YLAIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFRFPSSFVIYE 180

Query: 181 IFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSA 240
           IFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSA
Sbjct: 181 IFMYYVLLGMCFLSASIILWLRRTAISNAWRTIRDNQKAFFSLNTTIIFAKLSAFAVSSA 240

Query: 241 FIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGGMTSLSKIAKATAILIGVVELCCG 300
           FIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGGMTSLSKIAKATAILIGVVELCCG
Sbjct: 241 FIGMAGAFFAASRDRISPDMFKFSENIIVISIVILGGMTSLSKIAKATAILIGVVELCCG 300

Query: 301 MNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRSHSLLRLRTPSNFLER 351
           MNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRSHSLLRLRTPSNFLER
Sbjct: 301 MNFYYFNSLLKFDCSFNMRHTTLMVIALFLVILMRSHSLLRLRTPSNFLER 351


>gi|254780466|ref|YP_003064879.1| putative modification methylase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 375

 Score = 26.2 bits (56), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 279 TSLSKIAKATAILIGVVELCCGMNFYYFNSL 309
           T L  I +  A + G  E C G NF+YF  L
Sbjct: 326 TELGSIHRVGAKVSGS-ETCNGWNFWYFEKL 355


>gi|254780867|ref|YP_003065280.1| NADH dehydrogenase subunit N [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 478

 Score = 25.4 bits (54), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 16/111 (14%)

Query: 146 GKAGIYVADRL-YFLGTTV--RSLIRFFRF-------PSSFVIYEIFMYYVLLGM-CFLS 194
           G  G Y++DR  YF+   +   S+I F +        P S   + + M   +LGM C +S
Sbjct: 65  GLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMIS 124

Query: 195 AS--IILWLRRTAISNA-WRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFI 242
           A+  I  ++     S A +  I  N+K+ FS+   + +  L AF  SSAF+
Sbjct: 125 ANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAF--SSAFL 173


>gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 792

 Score = 24.3 bits (51), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 123 AIATLIMSEIFQNILIKWKPITNGKAGIYVADRLYFL 159
            +   I +++ +N  I+ K I++GK G +VADR   L
Sbjct: 653 EVKQSIATKMHENN-IRIKVISDGKLGSFVADRQRLL 688


>gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1162

 Score = 23.1 bits (48), Expect = 6.5,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 133 FQNILIKWKPITNGKAGIYVADRLYFLGTTVRSLIRFFR 171
           F+ I+I   P T       +ADRLYF   T   ++   R
Sbjct: 653 FETIMINCNPETV-STDYDIADRLYFESLTEEDILEILR 690


>gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 781

 Score = 22.7 bits (47), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 172 FPSSFVIYEIFMYYVLLGMCFLSASIILWLRRTAISNA 209
           FP SF +  I ++Y + G+  +  S    +RR  I  A
Sbjct: 19  FPRSFQMGFIILFYAIFGLSAVYGSNTSIVRRIEIRGA 56


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.333    0.144    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 209,952
Number of Sequences: 1233
Number of extensions: 8364
Number of successful extensions: 39
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 14
length of query: 351
length of database: 328,796
effective HSP length: 75
effective length of query: 276
effective length of database: 236,321
effective search space: 65224596
effective search space used: 65224596
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 39 (19.6 bits)