HHsearch alignment for GI: 254780897 and conserved domain: TIGR00115
>TIGR00115 tig trigger factor; InterPro: IPR005215 The trigger factor is found in several prokaryotes, and is involved in protein export. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. It acts as a chaperone by maintaining the newly synthesised protein in an open conformation. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity .; GO: 0015031 protein transport.
Probab=100.00 E-value=0 Score=563.55 Aligned_cols=429 Identities=23% Similarity=0.403 Sum_probs=390.2
Q ss_pred CCEEEEECCCCEE--EEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH-----HHHHHHHHHHHHHH
Q ss_conf 9118997279769--9999854899999999999998750738985897048899998610-----89999999999999
Q gi|254780897|r 1 MQVIEKFSEGLKR--ELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYG-----KSILSETIDEIIKE 73 (473)
Q Consensus 1 M~v~~~~~~~~~~--~l~v~v~~~~~~~~~~~~~~~~~~~~~ipGFRkGKvP~~ii~~~~g-----~~i~~e~~~~li~~ 73 (473)
T Consensus 2 m~~~~~~~~~~~~~L~l~i~i~~~~~~~~~~~~~~~~~k~v~I~GFR~GKVP~~l~~qr~~~AEL~~~~~q~vl~~l~~~ 81 (475)
T TIGR00115 2 MSVKVEKLPGSEVGLRLEIEIDAEVIKKAYDKLLKKLAKKVKIDGFRKGKVPRNLVEQRYGKAELLASIKQDVLEELIQR 81 (475)
T ss_pred CCEEEEEECCCCCEEEEEEEECHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 63055420477743899997666889999999998876200358635788786999854116899999999999987367
Q ss_pred HHHHHHHHCCCC------CCCCCCCCCCCCCCCCCCCCCCCC--CCEEEEEEEECCCCCCCC--CCCCCCCCCCCCCCCH
Q ss_conf 999999872995------422874122222233321101378--820578876227877621--1135643100121111
Q gi|254780897|r 74 IVPEILSKRDER------AAMRPSITINEGESDITSGLIEGT--VDLKLRLSYDILPQIEIS--SFDDLQVTQDICEVDE 143 (473)
Q Consensus 74 ~~~~~i~~~~~~------~~~~P~i~~~~~~~~~~~~~~~~~--~~~~~~~~~ev~Pei~l~--~y~~i~i~~~~~~vtd 143 (473)
T Consensus 82 ~~~~av~~~~~~~~Gnf~~~~~Pt~~~~~---------~~~~ld~~~~~~~~~~v~Pe~~l~~~~~k~i~~~~p~~~~~d 152 (475)
T TIGR00115 82 SFKEAVKEEGINVKGNFSIADRPTIDIKT---------IKEGLDKDLVFTATFDVYPEVKLPSEDYKKIKVEKPEVEVTD 152 (475)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHH---------HCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCEEECH
T ss_conf 89999997177653343436687520533---------123678871899998763026618755202110378455068
Q ss_pred HHHHHHHHHHHHHHHHCCCCC-C-CCCCCCEEEEE---EEEEECC---CCCCCCCCCCEEEEECCCCCCCCHHHHCCCCC
Q ss_conf 578999999764310000234-3-32211113444---5666426---53466654420365178665631034206887
Q gi|254780897|r 144 KEIDRQMAEIAKNNVAFEVKE-T-ESEIGDKVTVD---YTVSVDN---VILEDQSKKNVQFIVGSADLFSETTEILVGLK 215 (473)
Q Consensus 144 ~~Id~~i~~l~~~~~~~~~~~-~-~~~~gD~v~id---~~~~~dg---~~~~~~~~~~~~~~lg~~~~~~~f~~~liG~k 215 (473)
T Consensus 153 ~~~d~~lk~L~k~~a~~v~~~~~r~v~~~d~v~iDyaaF~g~vDg~aG~~~e~gka~~f~L~~G~~~~i~GFe~gl~Gm~ 232 (475)
T TIGR00115 153 EDVDNELKNLQKQQATLVEVEDKRAVANDDIVTIDYAAFVGFVDGSAGEEFEGGKAENFELTLGSGRFIPGFEDGLVGMK 232 (475)
T ss_pred HHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEEEEEEEEEECCCCCHHHCCCCCCCEEEEEECCCCCCCHHHHHHHEE
T ss_conf 99988999998612712122577000048858996200133311534401115410251789506771245542113200
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCCCCHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 887543323444444410003873046761011002467776747887502------36557899999988789999777
Q gi|254780897|r 216 TGDQKEIERFFPEDHSIKDLAGKKVRLNFSIKEVFSPLPVVVNNDLAVRLG------FESESAMRGLCSQKIKQHSEFLV 289 (473)
Q Consensus 216 ~Gd~~~~~~~~P~d~~~~~laGk~v~f~v~v~~I~~~~~pel~def~k~~~------~~t~~elk~~ik~~l~~~~~~~~ 289 (473)
T Consensus 233 ~ge~k~i~~tFP~dYhaE~LaGk~~~F~i~LK~Ik~relpelddef~k~~~~~~~q~~~tl~~Lk~~~~k~l~~~~k~~~ 312 (475)
T TIGR00115 233 AGEEKDIEVTFPEDYHAEELAGKPAKFKIKLKEIKKRELPELDDEFAKDVLEEEYQEFNTLAELKAEVRKQLEEELKQEL 312 (475)
T ss_pred CCCEEEEECCCCCCCCHHHHCCCCEEEEEEEHHHHHCCCCCCCHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 47654430268752682542597324543200121115798786899740765401132289999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH----HCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7766999-999998640034--7999999997767899999975348640011----00013456778999999999999
Q gi|254780897|r 290 RQKVKRQ-ILDYISNKYTFD--VPESLVENEYNGILQKVRFEMSSANQKSQNV----DSIDEEDLQYYHMLAKRRVLTGI 362 (473)
Q Consensus 290 ~~~~~~~-i~~~L~~~~~~~--lPe~lv~~e~~~~~~~~~~~l~~~~~~~~~~----~~~~e~~~~~~~~~Aek~vk~~l 362 (473)
T Consensus 313 ~~~~~~~k~i~~l~e~~~~DP~~P~~~I~~E~drll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ea~~~~k~~l 392 (475)
T TIGR00115 313 DNQEKNQKLIEKLSEKNTIDPYLPESMIEQEIDRLLRNQKQRAQRYGMNLEQLLQLSRESLEELKDRNKKEALKNVKSAL 392 (475)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999899999898731578875078999999999999999999718888999731256899987632888987568998
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECHHH
Q ss_conf 99999864387428999999999999863999899--9999870999899999999999999999885356655314888
Q gi|254780897|r 363 VLGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKK--MLDHFQKYPNALAELRAPIFEDKVIDHILKSVQIVDRKVTFDQ 440 (473)
Q Consensus 363 il~~Ia~~e~I~vs~~Ei~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~ile~Kv~d~l~~~a~i~ek~~~~~e 440 (473)
T Consensus 393 ~~~~~Ad~Ekikv~~~ev~~~~~~~~~~~~~~~~n~~~~~~~~~~-~l~~~~~~~~~kd~v~~~~~~~-~~~~~~~e~~~ 470 (475)
T TIGR00115 393 IMEAIADEEKIKVTEEEVKSELEEEAEAVEYPSENEELKKQIRES-SLLEAKNMALLKDAVEAELLKK-LVTEKIKEYSE 470 (475)
T ss_pred HHHHHHCHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC-CCHHHHEECCC
T ss_conf 899871220378876899999999999828971248999987533-4678888998887999998603-23012101042