HHsearch alignment for GI: 254780897 and conserved domain: TIGR00115

>TIGR00115 tig trigger factor; InterPro: IPR005215 The trigger factor is found in several prokaryotes, and is involved in protein export. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. It acts as a chaperone by maintaining the newly synthesised protein in an open conformation. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity .; GO: 0015031 protein transport.
Probab=100.00  E-value=0  Score=563.55  Aligned_cols=429  Identities=23%  Similarity=0.403  Sum_probs=390.2

Q ss_pred             CCEEEEECCCCEE--EEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH-----HHHHHHHHHHHHHH
Q ss_conf             9118997279769--9999854899999999999998750738985897048899998610-----89999999999999
Q gi|254780897|r    1 MQVIEKFSEGLKR--ELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYG-----KSILSETIDEIIKE   73 (473)
Q Consensus         1 M~v~~~~~~~~~~--~l~v~v~~~~~~~~~~~~~~~~~~~~~ipGFRkGKvP~~ii~~~~g-----~~i~~e~~~~li~~   73 (473)
T Consensus         2 m~~~~~~~~~~~~~L~l~i~i~~~~~~~~~~~~~~~~~k~v~I~GFR~GKVP~~l~~qr~~~AEL~~~~~q~vl~~l~~~   81 (475)
T TIGR00115         2 MSVKVEKLPGSEVGLRLEIEIDAEVIKKAYDKLLKKLAKKVKIDGFRKGKVPRNLVEQRYGKAELLASIKQDVLEELIQR   81 (475)
T ss_pred             CCEEEEEECCCCCEEEEEEEECHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             63055420477743899997666889999999998876200358635788786999854116899999999999987367


Q ss_pred             HHHHHHHHCCCC------CCCCCCCCCCCCCCCCCCCCCCCC--CCEEEEEEEECCCCCCCC--CCCCCCCCCCCCCCCH
Q ss_conf             999999872995------422874122222233321101378--820578876227877621--1135643100121111
Q gi|254780897|r   74 IVPEILSKRDER------AAMRPSITINEGESDITSGLIEGT--VDLKLRLSYDILPQIEIS--SFDDLQVTQDICEVDE  143 (473)
Q Consensus        74 ~~~~~i~~~~~~------~~~~P~i~~~~~~~~~~~~~~~~~--~~~~~~~~~ev~Pei~l~--~y~~i~i~~~~~~vtd  143 (473)
T Consensus        82 ~~~~av~~~~~~~~Gnf~~~~~Pt~~~~~---------~~~~ld~~~~~~~~~~v~Pe~~l~~~~~k~i~~~~p~~~~~d  152 (475)
T TIGR00115        82 SFKEAVKEEGINVKGNFSIADRPTIDIKT---------IKEGLDKDLVFTATFDVYPEVKLPSEDYKKIKVEKPEVEVTD  152 (475)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCHHH---------HCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCEEECH
T ss_conf             89999997177653343436687520533---------123678871899998763026618755202110378455068


Q ss_pred             HHHHHHHHHHHHHHHHCCCCC-C-CCCCCCEEEEE---EEEEECC---CCCCCCCCCCEEEEECCCCCCCCHHHHCCCCC
Q ss_conf             578999999764310000234-3-32211113444---5666426---53466654420365178665631034206887
Q gi|254780897|r  144 KEIDRQMAEIAKNNVAFEVKE-T-ESEIGDKVTVD---YTVSVDN---VILEDQSKKNVQFIVGSADLFSETTEILVGLK  215 (473)
Q Consensus       144 ~~Id~~i~~l~~~~~~~~~~~-~-~~~~gD~v~id---~~~~~dg---~~~~~~~~~~~~~~lg~~~~~~~f~~~liG~k  215 (473)
T Consensus       153 ~~~d~~lk~L~k~~a~~v~~~~~r~v~~~d~v~iDyaaF~g~vDg~aG~~~e~gka~~f~L~~G~~~~i~GFe~gl~Gm~  232 (475)
T TIGR00115       153 EDVDNELKNLQKQQATLVEVEDKRAVANDDIVTIDYAAFVGFVDGSAGEEFEGGKAENFELTLGSGRFIPGFEDGLVGMK  232 (475)
T ss_pred             HHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEEEEEEEEEECCCCCHHHCCCCCCCEEEEEECCCCCCCHHHHHHHEE
T ss_conf             99988999998612712122577000048858996200133311534401115410251789506771245542113200


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCCCCHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             887543323444444410003873046761011002467776747887502------36557899999988789999777
Q gi|254780897|r  216 TGDQKEIERFFPEDHSIKDLAGKKVRLNFSIKEVFSPLPVVVNNDLAVRLG------FESESAMRGLCSQKIKQHSEFLV  289 (473)
Q Consensus       216 ~Gd~~~~~~~~P~d~~~~~laGk~v~f~v~v~~I~~~~~pel~def~k~~~------~~t~~elk~~ik~~l~~~~~~~~  289 (473)
T Consensus       233 ~ge~k~i~~tFP~dYhaE~LaGk~~~F~i~LK~Ik~relpelddef~k~~~~~~~q~~~tl~~Lk~~~~k~l~~~~k~~~  312 (475)
T TIGR00115       233 AGEEKDIEVTFPEDYHAEELAGKPAKFKIKLKEIKKRELPELDDEFAKDVLEEEYQEFNTLAELKAEVRKQLEEELKQEL  312 (475)
T ss_pred             CCCEEEEECCCCCCCCHHHHCCCCEEEEEEEHHHHHCCCCCCCHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             47654430268752682542597324543200121115798786899740765401132289999999999999999999


Q ss_pred             HHHHHHH-HHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH----HCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             7766999-999998640034--7999999997767899999975348640011----00013456778999999999999
Q gi|254780897|r  290 RQKVKRQ-ILDYISNKYTFD--VPESLVENEYNGILQKVRFEMSSANQKSQNV----DSIDEEDLQYYHMLAKRRVLTGI  362 (473)
Q Consensus       290 ~~~~~~~-i~~~L~~~~~~~--lPe~lv~~e~~~~~~~~~~~l~~~~~~~~~~----~~~~e~~~~~~~~~Aek~vk~~l  362 (473)
T Consensus       313 ~~~~~~~k~i~~l~e~~~~DP~~P~~~I~~E~drll~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ea~~~~k~~l  392 (475)
T TIGR00115       313 DNQEKNQKLIEKLSEKNTIDPYLPESMIEQEIDRLLRNQKQRAQRYGMNLEQLLQLSRESLEELKDRNKKEALKNVKSAL  392 (475)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999899999898731578875078999999999999999999718888999731256899987632888987568998


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECHHH
Q ss_conf             99999864387428999999999999863999899--9999870999899999999999999999885356655314888
Q gi|254780897|r  363 VLGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKK--MLDHFQKYPNALAELRAPIFEDKVIDHILKSVQIVDRKVTFDQ  440 (473)
Q Consensus       363 il~~Ia~~e~I~vs~~Ei~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~ile~Kv~d~l~~~a~i~ek~~~~~e  440 (473)
T Consensus       393 ~~~~~Ad~Ekikv~~~ev~~~~~~~~~~~~~~~~n~~~~~~~~~~-~l~~~~~~~~~kd~v~~~~~~~-~~~~~~~e~~~  470 (475)
T TIGR00115       393 IMEAIADEEKIKVTEEEVKSELEEEAEAVEYPSENEELKKQIRES-SLLEAKNMALLKDAVEAELLKK-LVTEKIKEYSE  470 (475)
T ss_pred             HHHHHHCHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC-CCHHHHEECCC
T ss_conf             899871220378876899999999999828971248999987533-4678888998887999998603-23012101042