Query gi|254780897|ref|YP_003065310.1| trigger factor [Candidatus Liberibacter asiaticus str. psy62] Match_columns 473 No_of_seqs 157 out of 2082 Neff 8.0 Searched_HMMs 33803 Date Wed Jun 1 21:18:33 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780897.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1zxj_A MPN555, hypothetical p 100.0 1.7E-30 5E-35 262.6 13.8 206 210-436 2-213 (218) 2 >1t11_A Trigger factor, TF; he 99.9 3.9E-23 1.1E-27 203.6 16.1 117 1-126 4-120 (120) 3 >1p9y_A Trigger factor, TF; al 99.9 7.1E-23 2.1E-27 201.5 15.4 118 1-127 4-121 (121) 4 >1w26_A Trigger factor, TF; ch 99.9 2.9E-22 8.5E-27 196.6 11.9 117 1-126 1-117 (117) 5 >2nsa_A Trigger factor, TF; ch 99.8 4.7E-20 1.4E-24 178.9 13.8 168 266-435 2-169 (170) 6 >1w26_A Trigger factor, TF; ch 99.8 6.6E-20 1.9E-24 177.7 9.6 122 142-263 1-122 (122) 7 >3gty_X Trigger factor, TF; ch 99.8 1.3E-19 3.9E-24 175.3 6.9 108 1-123 1-108 (108) 8 >2d3o_1 Trigger factor, TF; ri 99.8 4E-19 1.2E-23 171.4 7.8 111 1-122 1-112 (112) 9 >3gty_X Trigger factor, TF; ch 99.7 5.5E-17 1.6E-21 154.3 4.9 94 158-263 1-94 (94) 10 >1t11_A Trigger factor, TF; he 99.6 3.3E-16 9.7E-21 148.1 7.4 129 266-400 36-164 (166) 11 >1hxv_A Trigger factor; FKBP f 99.6 3E-16 8.8E-21 148.4 6.7 112 139-250 1-113 (113) 12 >2nsc_A Trigger factor, TF; ch 99.6 3.2E-16 9.4E-21 148.2 6.4 89 21-122 1-89 (89) 13 >1t11_A Trigger factor, TF; he 99.6 5.8E-16 1.7E-20 146.1 6.4 106 158-263 1-106 (106) 14 >3cgm_A SLYD, peptidyl-prolyl 99.5 9.6E-15 2.8E-19 136.3 2.4 97 166-268 2-98 (102) 15 >2kfw_A FKBP-type peptidyl-pro 99.4 1.4E-13 4E-18 127.1 3.5 99 166-266 2-102 (142) 16 >2k8i_A SLYD, peptidyl-prolyl 99.4 1.9E-13 5.7E-18 125.9 3.0 103 166-271 2-107 (116) 17 >1q1c_A FK506-binding protein 99.2 3.3E-13 9.8E-18 124.0 -2.8 159 107-265 4-168 (280) 18 >1p5q_A FKBP52, FK506-binding 98.9 2.7E-10 8.1E-15 100.6 0.6 124 132-255 5-135 (136) 19 >1ix5_A FKBP; ppiase, isomeras 98.6 3.7E-08 1.1E-12 83.5 5.0 82 166-250 1-98 (99) 20 >2pbc_A FK506-binding protein 98.5 2.2E-07 6.5E-12 77.3 6.0 88 165-252 4-99 (102) 21 >2d9f_A FK506-binding protein 98.2 1.5E-06 4.3E-11 70.7 4.9 93 165-259 32-131 (135) 22 >1w26_A Trigger factor, TF; ch 98.1 4E-07 1.2E-11 75.2 -0.2 69 255-325 11-79 (80) 23 >2vn1_A 70 kDa peptidylprolyl 98.1 8E-06 2.4E-10 64.8 6.0 88 165-252 32-128 (129) 24 >1jvw_A Macrophage infectivity 98.1 5.2E-06 1.6E-10 66.3 5.1 99 166-264 52-156 (167) 25 >1yat_A FK506 binding protein; 98.0 1.2E-05 3.5E-10 63.4 5.9 86 165-250 20-113 (113) 26 >2ppn_A FK506-binding protein 98.0 1.3E-05 3.8E-10 63.1 5.3 86 165-250 14-107 (107) 27 >1fd9_A Protein (macrophage in 98.0 7.4E-06 2.2E-10 65.1 4.0 88 165-252 68-161 (162) 28 >1q6h_A FKBP-type peptidyl-pro 97.9 1.4E-05 4.2E-10 62.8 4.9 86 165-250 68-158 (158) 29 >1r9h_A FKB-6, FK506 binding p 97.8 2.2E-05 6.4E-10 61.4 4.8 99 165-263 28-135 (135) 30 >2awg_A 38 kDa FK-506 binding 97.8 3.3E-05 9.7E-10 59.9 5.0 83 166-250 29-117 (118) 31 >2ke0_A Peptidyl-prolyl CIS-tr 97.7 9.8E-05 2.9E-09 56.1 6.3 85 165-249 25-117 (117) 32 >2jwx_A FKBP38NTD, FK506-bindi 97.6 7.7E-05 2.3E-09 56.9 5.1 88 166-255 59-153 (157) 33 >1pbk_A FKBP25, EC 5.2.1.8; FK 97.6 0.00013 3.9E-09 55.0 5.8 86 165-250 15-116 (116) 34 >2f4e_A ATFKBP42; FKBP-like, a 97.6 0.00019 5.7E-09 53.7 6.1 96 165-260 62-169 (180) 35 >1w26_A Trigger factor, TF; ch 97.5 0.00045 1.3E-08 50.8 7.4 53 375-428 1-53 (53) 36 >3b7x_A FK506-binding protein 97.4 0.00018 5.4E-09 53.9 4.2 86 165-250 39-133 (134) 37 >2if4_A ATFKBP42; FKBP-like, a 97.4 0.00015 4.5E-09 54.5 3.7 91 165-255 62-164 (166) 38 >1kt0_A FKBP51, 51 kDa FK506-b 97.3 0.0005 1.5E-08 50.4 6.0 85 167-251 47-139 (257) 39 >1u79_A FKBP-type peptidyl-pro 97.0 0.0012 3.4E-08 47.5 4.9 85 165-249 25-128 (129) 40 >1kt0_A FKBP51, 51 kDa FK506-b 96.5 0.0022 6.5E-08 45.2 3.3 89 164-252 159-253 (257) 41 >1q1c_A FK506-binding protein 93.9 0.051 1.5E-06 34.3 3.2 72 182-253 199-276 (280) 42 >3gty_X Trigger factor, TF; ch 92.9 0.11 3.2E-06 31.7 3.6 53 375-427 1-53 (53) 43 >1m5y_A SurviVal protein, surv 91.6 0.57 1.7E-05 25.9 6.0 59 375-433 1-64 (93) 44 >3gty_X Trigger factor, TF; ch 86.5 2 6E-05 21.5 7.3 68 303-374 9-78 (78) 45 >3htx_A HEN1; HEN1, small RNA 85.6 0.81 2.4E-05 24.7 3.3 63 190-252 102-178 (185) 46 >1te7_A Hypothetical UPF0267 p 76.1 3.4 1E-04 19.7 3.7 45 235-280 44-88 (103) 47 >2pn0_A Prokaryotic transcript 67.5 2.1 6.2E-05 21.4 1.1 37 204-252 40-76 (87) 48 >3bmb_A Regulator of nucleosid 66.4 2.6 7.6E-05 20.7 1.4 39 204-254 40-78 (85) 49 >2p4v_A Transcription elongati 64.7 5.3 0.00016 18.2 2.7 36 203-251 38-73 (76) 50 >2akh_Y Preprotein translocase 61.7 8.4 0.00025 16.5 3.8 15 323-337 264-278 (360) 51 >2o3f_A Putative HTH-type tran 55.2 4.9 0.00015 18.4 1.2 25 261-285 59-83 (111) 52 >2f23_A Anti-cleavage anti-GRE 52.8 6.3 0.00019 17.5 1.4 32 205-249 43-74 (76) 53 >1grj_A GREA protein; transcri 50.6 4 0.00012 19.1 0.1 20 205-224 41-60 (75) 54 >1wpc_A Glucan 1,4-alpha-malto 49.7 13 0.00037 15.1 3.0 40 8-47 94-133 (267) 55 >3din_C Preprotein translocase 47.5 8.7 0.00026 16.4 1.4 24 37-60 131-154 (180) 56 >3gty_X Trigger factor, TF; ch 46.9 14 0.00041 14.8 4.9 39 266-304 34-72 (100) 57 >2zjs_Y Preprotein translocase 45.0 8.8 0.00026 16.4 1.2 24 37-60 133-156 (224) 58 >3bh4_A Alpha-amylase; calcium 42.9 16 0.00046 14.4 3.0 47 8-54 90-139 (292) 59 >3bc9_A AMYB, alpha amylase, c 42.7 16 0.00047 14.3 3.6 39 9-47 105-143 (298) 60 >3faw_A Reticulocyte binding p 40.3 17 0.0005 14.1 2.9 11 77-87 48-58 (340) 61 >1ht6_A AMY1, alpha-amylase is 37.4 19 0.00055 13.7 3.1 42 9-50 81-122 (288) 62 >3cfu_A Uncharacterized lipopr 35.5 20 0.00059 13.5 3.2 82 166-247 42-141 (159) 63 >3b9q_A Chloroplast SRP recept 35.3 20 0.00059 13.5 3.3 16 266-281 46-61 (102) 64 >3iwf_A Transcription regulato 35.2 20 0.0006 13.5 1.8 13 388-400 42-54 (74) 65 >3h36_A Polyribonucleotide nuc 32.4 22 0.00066 13.1 7.3 76 251-327 3-78 (93) 66 >1jmx_A Amine dehydrogenase; o 31.9 23 0.00067 13.1 4.4 40 358-397 35-74 (80) 67 >2vcc_A Alpha-N-acetylglucosam 29.9 24 0.00072 12.8 2.0 30 305-335 208-237 (453) 68 >1pby_A Quinohemoprotein amine 29.8 24 0.00072 12.8 4.4 40 358-397 34-73 (79) 69 >1zu4_A FTSY; GTPase, signal r 29.7 24 0.00072 12.8 2.5 15 377-391 95-109 (117) 70 >1hmj_A RPB5, protein (subunit 29.0 25 0.00074 12.7 1.5 39 141-179 15-61 (78) 71 >2ww9_A SEC sixty-one protein 28.2 24 0.0007 12.9 1.1 12 39-50 165-176 (250) 72 >2b25_A Hypothetical protein; 28.0 26 0.00077 12.6 2.2 58 160-222 3-62 (73) 73 >2wwb_A Protein transport prot 27.7 26 0.00077 12.6 6.3 17 37-53 146-162 (225) 74 >2f0c_A Phage TP901-1 ORF49 (B 24.5 30 0.00088 12.1 1.6 60 167-229 34-93 (117) 75 >1js9_A Coat protein, capsid p 23.7 31 0.0009 12.0 1.8 48 207-261 137-184 (189) 76 >2wvr_C DNA replication factor 23.4 20 0.00058 13.6 0.0 35 356-390 471-505 (546) 77 >2z6o_A UFM1-conjugating enzym 23.1 31 0.00093 11.9 3.1 27 112-138 27-60 (69) 78 >1wn1_A Dipeptidase; prolidase 22.2 33 0.00096 11.8 4.4 10 74-83 43-52 (229) 79 >1yc6_A Coat protein; structur 21.8 33 0.00098 11.8 1.7 48 207-261 102-149 (154) 80 >1udx_A The GTP-binding protei 21.4 34 0.00099 11.7 2.5 40 137-176 32-72 (82) 81 >3cvz_A S-layer protein; surfa 20.3 35 0.001 11.5 4.2 92 138-251 7-109 (130) 82 >1dzf_A DNA-directed RNA polym 20.1 35 0.001 11.5 1.7 14 141-154 12-25 (71) No 1 >>1zxj_A MPN555, hypothetical protein Mg377 homolog; mostly alpha helical protein, TRI-lobal structure, structural genomics, PSI; 2.80A {Mycoplasma pneumoniae} (A:) Probab=99.97 E-value=1.7e-30 Score=262.64 Aligned_cols=206 Identities=9% Similarity=0.066 Sum_probs=187.8 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCCCCHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 206887887543323444444410003873046761011002467776747887502-3655789999998878999977 Q gi|254780897|r 210 ILVGLKTGDQKEIERFFPEDHSIKDLAGKKVRLNFSIKEVFSPLPVVVNNDLAVRLG-FESESAMRGLCSQKIKQHSEFL 288 (473) Q Consensus 210 ~liG~k~Gd~~~~~~~~P~d~~~~~laGk~v~f~v~v~~I~~~~~pel~def~k~~~-~~t~~elk~~ik~~l~~~~~~~ 288 (473) +|+|||+||+++|+ +||+||+.+++|||++.|+|+|++|+++.+|++||+||++++ ++|+++||+.+++.|..++... T Consensus 2 gLiG~k~Ge~~~~~-~~p~dy~~~~lagk~~~f~v~v~~I~~~~~pel~de~~~~~~~~~tv~e~k~~~~~~l~~~~~~~ 80 (218) T 1zxj_A 2 GSSHHHHHHDYDIP-TTENLYFQGHMATNLKSTAKLVKPIQYDEVIEVERIFADPAFIEQHRQRILASFKDAKESALYHE 80 (218) T ss_dssp ---------CCCC--------CCSSCC-CCSCEEEECSCCCTTSCEEECCSCCCHHHHHHHHHHHHTTCTTCCHHHHHHH T ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCCHHHHCCCCEEEEEECCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 97644555678865-52346856310233157700210004566677788999872545568999999999999999999 Q ss_pred H-----HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7-----77669999999986400347999999997767899999975348640011000134567789999999999999 Q gi|254780897|r 289 V-----RQKVKRQILDYISNKYTFDVPESLVENEYNGILQKVRFEMSSANQKSQNVDSIDEEDLQYYHMLAKRRVLTGIV 363 (473) Q Consensus 289 ~-----~~~~~~~i~~~L~~~~~~~lPe~lv~~e~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~Aek~vk~~li 363 (473) . ...+++++++.|++.++|++|+++|+++++++++++..+ ..++.++..|++++|++|| T Consensus 81 ~~~~~~~~~~~~~i~~~l~~~~~~~lpe~~i~~e~~~~~~~~~~~----------------~~~e~~~~~aek~lk~~li 144 (218) T 1zxj_A 81 LTHIVIKDNLFSCAMNAIVGYFEFNIDEAELKNVMEGLKRDVIQG----------------AEDNTVQAIAEKIIKKALV 144 (218) T ss_dssp HHHHHHHHHHHHHHHHHHGGGEEEECCHHHHHHHHHHHHHC---------------------CCHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999874888899999999999988999865----------------0136789999999999999 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEE Q ss_conf 9999864387428999999999999863999899999987099989999999999999999988535665531 Q gi|254780897|r 364 LGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKKMLDHFQKYPNALAELRAPIFEDKVIDHILKSVQIVDRKV 436 (473) Q Consensus 364 l~~Ia~~e~I~vs~~Ei~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ile~Kv~d~l~~~a~i~ek~~ 436 (473) +++||+.++|+||++|+.+++.+++.+|+.++... .++++.+.++++.++++|+++||+++|+++++.. T Consensus 145 l~~ia~~e~i~vt~eei~~~i~~~a~~~~~~~~~~----~~~~~~~~~i~~~l~~~Kv~~~l~~~a~v~~~~~ 213 (218) T 1zxj_A 145 FNHLQKEWKVEITDEVVKNVISLYYEKTNQSVREY----LDDKQKFEGVRTALLEERMVLETINHFKFHFNLT 213 (218) T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHSCSCCHHH----HSCHHHHHHHHHHHHHHHHHHHHHHTCCEEECSS T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCC T ss_conf 99999980899999999999999883378999999----9699999999999999999999998411400455 No 2 >>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} (A:1-120) Probab=99.91 E-value=3.9e-23 Score=203.61 Aligned_cols=117 Identities=27% Similarity=0.559 Sum_probs=112.8 Q ss_pred CCEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 91189972797699999854899999999999998750738985897048899998610899999999999999999998 Q gi|254780897|r 1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGKSILSETIDEIIKEIVPEILS 80 (473) Q Consensus 1 M~v~~~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~~ipGFRkGKvP~~ii~~~~g~~i~~e~~~~li~~~~~~~i~ 80 (473) |++++++.++|+++++|+||+++|+..+++++++++++++||||||||||+++|+++||++|++++++.+++.+|.++++ T Consensus 4 M~~~~~~~~~~~~~~~v~v~~~~~~~~~~k~~~~~~k~~~ipGFRkGKvP~~ii~~~~~~~i~~e~~~~li~~~~~~~l~ 83 (120) T 1t11_A 4 MQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMYGKAVRQDVLGEVMQRHFIEAIV 83 (120) T ss_dssp CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCCCTTSCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CEEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 15899987885899999987999999999999999711888998999888999999987999999999999999999985 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCC Q ss_conf 7299542287412222223332110137882057887622787762 Q gi|254780897|r 81 KRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDILPQIEI 126 (473) Q Consensus 81 ~~~~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~ev~Pei~l 126 (473) +.++.|+++|.+...+ ++.+++|+|+++|+++|+|+| T Consensus 84 e~~~~~i~~p~i~~~~---------~~~~~~~~~~~~~ev~Pei~l 120 (120) T 1t11_A 84 KEKINPAGAPTFAPVE---------IGEGKDLVFTATFEVYPEVEL 120 (120) T ss_dssp HTTCCBSSCCEEEEEE---------CCTTSCEEEEEEEEBCCCCCC T ss_pred HCCCCCCCCCCCCCCC---------CCCCCCCEEECCCEECCCCCC T ss_conf 2035777887534123---------456787124113111476543 No 3 >>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} (A:) Probab=99.91 E-value=7.1e-23 Score=201.51 Aligned_cols=118 Identities=21% Similarity=0.455 Sum_probs=113.3 Q ss_pred CCEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 91189972797699999854899999999999998750738985897048899998610899999999999999999998 Q gi|254780897|r 1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGKSILSETIDEIIKEIVPEILS 80 (473) Q Consensus 1 M~v~~~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~~ipGFRkGKvP~~ii~~~~g~~i~~e~~~~li~~~~~~~i~ 80 (473) |+++++..++++++++|+||+++|+..+++++++++++++||||||||||+++|+++||++|++++++.+++.++.++++ T Consensus 4 M~~~~~~~~~~~~~~~v~v~~~~~~~~~~k~~~~~~k~~kipGFRkGKvP~~ii~~~~~~~i~~e~~~~li~~~~~~~~~ 83 (121) T 1p9y_A 4 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGLRKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAII 83 (121) T ss_dssp CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCCCTTSCTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CEEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 07999986786799999998999999999999999833888997889889999999985899999999999999999999 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCC Q ss_conf 72995422874122222233321101378820578876227877621 Q gi|254780897|r 81 KRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDILPQIEIS 127 (473) Q Consensus 81 ~~~~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~ev~Pei~l~ 127 (473) ++++.|+++|.+...+ ++.+++|+|+++|+++|+|+|+ T Consensus 84 e~~i~~~~~p~~~~~~---------~~~~~~~~~~~~~ev~Pei~lk 121 (121) T 1p9y_A 84 KEKINPAGAPTYVPGE---------YKLGEDFTYSVEFEVYPEVELQ 121 (121) T ss_dssp HTTCCCEEEEEEEECC---------CCSSSCEEEEEEEECCCCCCC- T ss_pred HCCCCCCCCCCCCCCC---------CCCCCCEEEEEEEEECCCEEEC T ss_conf 6456867788636445---------3579977999999962757559 No 4 >>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} (A:1-117) Probab=99.88 E-value=2.9e-22 Score=196.63 Aligned_cols=117 Identities=21% Similarity=0.445 Sum_probs=111.3 Q ss_pred CCEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 91189972797699999854899999999999998750738985897048899998610899999999999999999998 Q gi|254780897|r 1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGKSILSETIDEIIKEIVPEILS 80 (473) Q Consensus 1 M~v~~~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~~ipGFRkGKvP~~ii~~~~g~~i~~e~~~~li~~~~~~~i~ 80 (473) .+|++++.++|+++++|+||+++|+.++++++++++++++||||||||||+++|+++||++|+.++++++++.+|.++++ T Consensus 1 ~kv~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~k~~~ipGFRkGKvP~~ii~~~~g~~i~~e~~~~ii~~~~~~~~~ 80 (117) T 1w26_A 1 XQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGFRKGKVPXNIVAQRYGASVRQDVLGDLXSRNFIDAII 80 (117) T ss_dssp CEEECCBCSTTEEEEEEEECHHHHHHHHHHHHHHHHHHTTCGGGCCSSSCHHHHHHHHCTTTHHHHHHHHHHHHHHHHHH T ss_pred CCEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 96079977786799999997999999999999998660877998999888999999976999999999999999999999 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCC Q ss_conf 7299542287412222223332110137882057887622787762 Q gi|254780897|r 81 KRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDILPQIEI 126 (473) Q Consensus 81 ~~~~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~ev~Pei~l 126 (473) +.++.|++.|.+...+ ++.+++|+|+++|+++|+|+| T Consensus 81 ~~~i~~i~~p~i~~~~---------~~~~~~~~~~~~~ev~Pe~~l 117 (117) T 1w26_A 81 KEKINPAGAPTYVPGE---------YKLGEDFTYSVEFEVYPEVEL 117 (117) T ss_dssp HSCCCEEEEEEEEECC---------CCTTSCEEEEEEEEECCCCCC T ss_pred HCCCCCCCCCCCCCCC---------CCCCCCCCCEEEEEEECCCCC T ss_conf 6688853232111112---------355677430158998315443 No 5 >>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima} (A:) Probab=99.84 E-value=4.7e-20 Score=178.91 Aligned_cols=168 Identities=14% Similarity=0.173 Sum_probs=159.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHH Q ss_conf 23655789999998878999977777669999999986400347999999997767899999975348640011000134 Q gi|254780897|r 266 GFESESAMRGLCSQKIKQHSEFLVRQKVKRQILDYISNKYTFDVPESLVENEYNGILQKVRFEMSSANQKSQNVDSIDEE 345 (473) Q Consensus 266 ~~~t~~elk~~ik~~l~~~~~~~~~~~~~~~i~~~L~~~~~~~lPe~lv~~e~~~~~~~~~~~l~~~~~~~~~~~~~~e~ 345 (473) +|+|+++||+.|+++|..++........++++++.|++.++|++|+++++++++++++++..++.++|+..... +.++ T Consensus 2 ~~~ti~el~~~i~~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~iP~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~ 79 (170) T 2nsa_A 2 EFETLEQLKESLKKEGKEIYDVEXKESXREQLLEKLPEIVEIEISDRTLEILVNEAINRLKREGRYEQIVSSYE--SEEK 79 (170) T ss_dssp CCCSHHHHHHHTCCBGGGGCCTTHHHHHHHHHHHHGGGGCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHTSS--CHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CHHH T ss_conf 98989999999999999999999999999999999987688899889999999999999999876455554424--6898 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH Q ss_conf 56778999999999999999998643874289999999999998639998999999870999899999999999999999 Q gi|254780897|r 346 DLQYYHMLAKRRVLTGIVLGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKKMLDHFQKYPNALAELRAPIFEDKVIDHI 425 (473) Q Consensus 346 ~~~~~~~~Aek~vk~~lil~~Ia~~e~I~vs~~Ei~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ile~Kv~d~l 425 (473) +.+.++..|++++++.|++.+||+.++|+||++||+.++..++.+||.+++++.+.|..++.....++..++++|+++|| T Consensus 80 ~~~~~~~~a~~~lk~~lil~~ia~~e~I~Vs~eei~~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~kv~~~l 159 (170) T 2nsa_A 80 FREELKERILDDIKRDRVIEVLAQEKGISVNDEELEKEAEELAPFWGISPDRAKSLVKARQDLREELRWAILKRKVLDLL 159 (170) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH T ss_conf 88889999999999999999999885788999999999999998869999999999985889999999999999999999 Q ss_pred HHHCEEEEEE Q ss_conf 8853566553 Q gi|254780897|r 426 LKSVQIVDRK 435 (473) Q Consensus 426 ~~~a~i~ek~ 435 (473) +++|+++++. T Consensus 160 ~~~a~v~ek~ 169 (170) T 2nsa_A 160 LQEVEHHHHH 169 (170) T ss_dssp HTTCCCBCC- T ss_pred HHHHHHHCCC T ss_conf 9974311248 No 6 >>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} (A:133-254) Probab=99.82 E-value=6.6e-20 Score=177.74 Aligned_cols=122 Identities=21% Similarity=0.366 Sum_probs=120.5 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCC Q ss_conf 11578999999764310000234332211113444566642653466654420365178665631034206887887543 Q gi|254780897|r 142 DEKEIDRQMAEIAKNNVAFEVKETESEIGDKVTVDYTVSVDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKE 221 (473) Q Consensus 142 td~~Id~~i~~l~~~~~~~~~~~~~~~~gD~v~id~~~~~dg~~~~~~~~~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~ 221 (473) ||++|+..+++++.++++|.+.+++++.||.|.|+|.++.+|..+.+....++++.+|++.+++||.++|+||++|+++. T Consensus 1 Tee~v~~~i~~~~~~~~~~~~~~~~~~~gD~V~v~y~~~~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~l~gmk~Ge~~~ 80 (122) T 1w26_A 1 TDADVDGXLDTLRKQQATWKEKDGAVEAEDRVTIDFTGSVDGEEFEGGKASDFVLAXGQGRXIPGFEDGIKGHKAGEEFT 80 (122) T ss_dssp CHHHHHHHHHHHHHHTCEECCCSSCCCTTCEEEECEEEESSSCBCSSCCCSSEEEETTSCCSCTTHHHHSSSCCSSCEEE T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCEEE T ss_conf 71767999999875302112334456779989999998017863344556774899369876600566655412786689 Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCCCCHHHHH Q ss_conf 323444444410003873046761011002467776747887 Q gi|254780897|r 222 IERFFPEDHSIKDLAGKKVRLNFSIKEVFSPLPVVVNNDLAV 263 (473) Q Consensus 222 ~~~~~P~d~~~~~laGk~v~f~v~v~~I~~~~~pel~def~k 263 (473) +.+++|++|+...++|+++.|+|+|++|+++.+|++||+||| T Consensus 81 ~~i~~~~~y~~~~~~g~~~~f~V~v~~v~~~~lpe~~de~ak 122 (122) T 1w26_A 81 IDVTFPEEYHAENLKGKAAKFAINLKKVEERELPELTAEFIK 122 (122) T ss_dssp EEEECCTTCSCTTTSSCEEEEEEECCEECCEECCCCSHHHHT T ss_pred EEEECCCCCCCCCCCCCCCEEEEEECCEEEEECCCHHHHHHH T ss_conf 998556434431002553113434000012103312578998 No 7 >>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} PDB: 3gu0_A (X:1-108) Probab=99.79 E-value=1.3e-19 Score=175.26 Aligned_cols=108 Identities=19% Similarity=0.368 Sum_probs=97.6 Q ss_pred CCEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 91189972797699999854899999999999998750738985897048899998610899999999999999999998 Q gi|254780897|r 1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGKSILSETIDEIIKEIVPEILS 80 (473) Q Consensus 1 M~v~~~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~~ipGFRkGKvP~~ii~~~~g~~i~~e~~~~li~~~~~~~i~ 80 (473) |++++++.++|++.++|+||+++|+..+++++++++++++||||||||||+++|+++||++|..++.+.+++.++..+ T Consensus 1 M~~~~~~~~~~~~~~~v~v~~~e~~~~~~~~~~~~~k~~~ipGFRkGKvP~~~i~k~~g~~i~~~~~~~i~~~~~~~~-- 78 (108) T 3gty_X 1 MEVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRVEIPGFRKGRIPKNVLKMKLGEEFQEYTLDFLMDLIPDTL-- 78 (108) T ss_dssp CEEEEEEEETTEEEEEEECCTTHHHHHHHHHHHHHHTSCCCCC--CCCCCSHHHHTTSTTHHHHHHHHHHHTTSTTTS-- T ss_pred CEEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-- T ss_conf 926999778868999999869999999999999984717779999997899999999879999999999999999998-- Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC Q ss_conf 7299542287412222223332110137882057887622787 Q gi|254780897|r 81 KRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDILPQ 123 (473) Q Consensus 81 ~~~~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~ev~Pe 123 (473) .+..+++.|.+++.+ ++||+|+++|+++|+ T Consensus 79 -~~~~~~~~p~~~~~~------------~~d~~~~~~~ev~PE 108 (108) T 3gty_X 79 -KDRKLILSPIVTERE------------LKDVTARVVVEVHEE 108 (108) T ss_dssp -SSSCBSSCCEEEEEE------------ECSSCEEEEEEEEBC T ss_pred -HHCCCCCCCCCCCCC------------CCCCCEEEEEEEEEC T ss_conf -642255788645433------------467765899999847 No 8 >>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7 (1:) Probab=99.78 E-value=4e-19 Score=171.45 Aligned_cols=111 Identities=19% Similarity=0.295 Sum_probs=99.8 Q ss_pred CCEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH Q ss_conf 911899727976999998548999999999999987507389858970488999986108-9999999999999999999 Q gi|254780897|r 1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGK-SILSETIDEIIKEIVPEIL 79 (473) Q Consensus 1 M~v~~~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~~ipGFRkGKvP~~ii~~~~g~-~i~~e~~~~li~~~~~~~i 79 (473) |+.+. +.++|+++++|+||+++|+.++++++++++++++||||||||||+++|+++||+ +|+.++++.+++.++.+++ T Consensus 1 M~~i~-~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~k~~kipGFRkGKvP~~ii~k~~g~~~i~~e~~~~~i~~~~~~~~ 79 (112) T 2d3o_1 1 MAELI-SKEGNKVEFKVSVPAAEVNRAYDQVWAGLARDVRVPGFRPGKAPRKVIENRVGKGYVESQVRDRLLETHYSQGL 79 (112) T ss_dssp ----------CCEEEEECCCGGGTHHHHHHHHHHHHTTSCBTTBCTTCCCSTTHHHHTTTTSSHHHHHHHHHHHHHHHHH T ss_pred CCEEE-ECCCCEEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 96258-53798899999998999999999999999851889997798885899998856999999999999999999999 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC Q ss_conf 8729954228741222222333211013788205788762278 Q gi|254780897|r 80 SKRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDILP 122 (473) Q Consensus 80 ~~~~~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~ev~P 122 (473) +++++.|++.|.. + ..++.+++|+|+++|+++| T Consensus 80 ~e~~~~~i~p~~~-~---------~~~~~~~~~~~~~~~ev~P 112 (112) T 2d3o_1 80 RELGLNLVDATVD-P---------QDVQSGQAFEFTVKGETYP 112 (112) T ss_dssp HHSCCCCCCEECC-C---------CCCCSSSCCCEEEEEC--- T ss_pred HHCCCCCCCCCCC-C---------CCCCCCCCEEEEEEEEEEC T ss_conf 9879988899727-4---------3457899779999999619 No 9 >>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} PDB: 3gu0_A (X:146-239) Probab=99.66 E-value=5.5e-17 Score=154.29 Aligned_cols=94 Identities=28% Similarity=0.313 Sum_probs=89.5 Q ss_pred HHCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 00002343322111134445666426534666544203651786656310342068878875433234444444100038 Q gi|254780897|r 158 VAFEVKETESEIGDKVTVDYTVSVDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAG 237 (473) Q Consensus 158 ~~~~~~~~~~~~gD~v~id~~~~~dg~~~~~~~~~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~laG 237 (473) |+|++++|+++.||+|+|||++++||+++++++++++.+.+|++. ||+++|+||++|++++|+++| || T Consensus 1 A~~~~~~r~~~~GD~v~id~~~~~dG~~~~~~~~~~~~~~lg~~~---gf~~~L~G~k~Ge~~~~~~~f---------ag 68 (94) T 3gty_X 1 ALLEPKEGPAEAGDLVRVNMEVYNEEGKKLTSREYEYVISEDEDR---PFVKDLVGKKKGDVVEIEREY---------EG 68 (94) T ss_dssp CCEEECCSCCCTTSEEEEEEEEECTTSCEEEEEEEEEECCSSCCC---TTHHHHTTCCTTCEEEEEEEE---------TT T ss_pred CCCCCCHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCHH---HHHHHHCCCCCCCEEEECCCC---------CC T ss_conf 303553244424874787301245656666666526870476200---117764377678523102245---------68 Q ss_pred CCEEEEEEHHHHHCCCCCCCCHHHHH Q ss_conf 73046761011002467776747887 Q gi|254780897|r 238 KKVRLNFSIKEVFSPLPVVVNNDLAV 263 (473) Q Consensus 238 k~v~f~v~v~~I~~~~~pel~def~k 263 (473) |+++|+|+|++|+++.+|+|||+||| T Consensus 69 k~~~f~v~i~~vk~~~lPeldDefaK 94 (94) T 3gty_X 69 KKYTYKLEVEEVYKRTLPEIGDELAK 94 (94) T ss_dssp EEEEEEEEEEEEEEECCCCSSHHHHH T ss_pred CCEEEEEEEEECEECCCCCCCHHHHH T ss_conf 72158998720110368865389997 No 10 >>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} (A:121-151,A:258-392) Probab=99.65 E-value=3.3e-16 Score=148.09 Aligned_cols=129 Identities=15% Similarity=0.294 Sum_probs=121.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHH Q ss_conf 23655789999998878999977777669999999986400347999999997767899999975348640011000134 Q gi|254780897|r 266 GFESESAMRGLCSQKIKQHSEFLVRQKVKRQILDYISNKYTFDVPESLVENEYNGILQKVRFEMSSANQKSQNVDSIDEE 345 (473) Q Consensus 266 ~~~t~~elk~~ik~~l~~~~~~~~~~~~~~~i~~~L~~~~~~~lPe~lv~~e~~~~~~~~~~~l~~~~~~~~~~~~~~e~ 345 (473) |++|+++||+.||++|..++.......++++|+++|++.++|+||+++|+++++++++++..++..+|.+.+ +. T Consensus 36 ~~~TleeLk~~ire~le~~~~~~~~~~~~~~ild~L~e~~~~dlPeslv~~e~~~l~~~~~~~l~~~g~~~e------e~ 109 (166) T 1t11_A 36 AEGGVDALKAEVRKNMERELKQAIKARIKEQAIEGLVKENEIQVPSALIDQEINVLRQQAAQRFGGNVEAAA------QL 109 (166) T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTBCSCCCEEECHHHHHHHHHHHHHHHHHHSSCSHHHHT------TS T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH------HH T ss_conf 545578999999999999999999988887899999974366798078999999999999988277834444------66 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH Q ss_conf 5677899999999999999999864387428999999999999863999899999 Q gi|254780897|r 346 DLQYYHMLAKRRVLTGIVLGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKKMLD 400 (473) Q Consensus 346 ~~~~~~~~Aek~vk~~lil~~Ia~~e~I~vs~~Ei~~~i~~~~~~~~~~~~~~~~ 400 (473) +++.++..|+++||++||+++||+.+||+||++||..++..++..||.+++.+.. T Consensus 110 ~~ee~~~~Aek~vK~~lil~~IA~~e~I~vseeEi~~~i~~~A~~yg~~~e~ik~ 164 (166) T 1t11_A 110 PRELFEEQAKRRVVVGLLLGEVIRTHELKADEEKVKALITEMATAYEDPSEVVSY 164 (166) T ss_dssp CGGGTHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHCC--------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHH T ss_conf 7889999999999999999999999789889999999999999846998999986 No 11 >>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} (A:) Probab=99.64 E-value=3e-16 Score=148.43 Aligned_cols=112 Identities=22% Similarity=0.318 Sum_probs=108.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCC Q ss_conf 21111578999999764310000234-33221111344456664265346665442036517866563103420688788 Q gi|254780897|r 139 CEVDEKEIDRQMAEIAKNNVAFEVKE-TESEIGDKVTVDYTVSVDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTG 217 (473) Q Consensus 139 ~~vtd~~Id~~i~~l~~~~~~~~~~~-~~~~~gD~v~id~~~~~dg~~~~~~~~~~~~~~lg~~~~~~~f~~~liG~k~G 217 (473) ++|||++|+..+++++.++++|.+.+ ++++.||.|+|+|.++.||.++.+....++.+.+|.+.++|||+++|+||++| T Consensus 1 vevtdedv~~~~~~~~~~~~~~~~~~g~~~~~gD~V~i~y~~~~dg~~~~~~~~~~~~~~~g~~~~~~g~~~~l~gmk~G 80 (113) T 1hxv_A 1 MRGSHHHHHHGSEKLAKTKSTMVDVSDKKLANGDIAIIDFTGIVDNKKLASASAQNYELTIGSNSFIKGFETGLIAMKVN 80 (113) T ss_dssp ----------------------------CCCSSEEEEEEEEEEETTEECSTTCCSEEEEEETSSCSCTTHHHHHHTSCSS T ss_pred CCCCCCCCCCCHHHHHHHCCCCEECCCCCCCCCCEEEEEEEEEECCEECCCCCCCEEEEEECCCCCCCCHHHHHCCCCCC T ss_conf 98642556667699997648734547756799999999999999999735877723879966876563588863887589 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHH Q ss_conf 754332344444441000387304676101100 Q gi|254780897|r 218 DQKEIERFFPEDHSIKDLAGKKVRLNFSIKEVF 250 (473) Q Consensus 218 d~~~~~~~~P~d~~~~~laGk~v~f~v~v~~I~ 250 (473) +++++.++||.+|+.+.++|+++.|+|+|++|+ T Consensus 81 e~~~~~i~~~~~y~~~~~~g~~~~f~V~v~~vk 113 (113) T 1hxv_A 81 QKKTLALTFPSDYHVKELQSKPVTFEVVLKAIK 113 (113) T ss_dssp EEEEECCCCCTTSSSSGGGSCCCEEEEEECCBC T ss_pred CEEEEEECCCHHCCCCCCCCCEEEEEEEEEEEC T ss_conf 789999789110377777998389999999969 No 12 >>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A (A:21-109) Probab=99.64 E-value=3.2e-16 Score=148.21 Aligned_cols=89 Identities=15% Similarity=0.271 Sum_probs=81.0 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 89999999999999875073898589704889999861089999999999999999999872995422874122222233 Q gi|254780897|r 21 SNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGKSILSETIDEIIKEIVPEILSKRDERAAMRPSITINEGESD 100 (473) Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~ipGFRkGKvP~~ii~~~~g~~i~~e~~~~li~~~~~~~i~~~~~~~~~~P~i~~~~~~~~ 100 (473) +++|+..+++++++++++++||||||||||+++|+++||++|+.++++++++.+|.++++++++.+...+... T Consensus 1 Aee~~~~~~~~~~~~~~~~~ipGFRkGKvP~~~i~k~~g~~i~~e~~~~li~~~~~~~~~e~~i~~p~~~~~~------- 73 (89) T 2nsc_A 1 AEEIAQAEDKAVRYLNQRVEIPGFRKGRIPKNVLKMKLGEEFQEYTLDFLMDLIPDTLKDRKLILSPIVTERE------- 73 (89) T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTSCTTCCCHHHHHHHHGGGHHHHHHHHHHTTHHHHTTTSCCSSCCCCCCCC------- T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC------- T ss_conf 9999999999999998638899987998899999999879999999999999999999874688999978432------- Q ss_pred CCCCCCCCCCCEEEEEEEECCC Q ss_conf 3211013788205788762278 Q gi|254780897|r 101 ITSGLIEGTVDLKLRLSYDILP 122 (473) Q Consensus 101 ~~~~~~~~~~~~~~~~~~ev~P 122 (473) ..+++|+|+++|+++| T Consensus 74 ------~~~~~~~~~~~~ev~P 89 (89) T 2nsc_A 74 ------LKDVTARVVVEVHEEP 89 (89) T ss_dssp ------CCCCCCCCCCCCCCCC T ss_pred ------CCCCCEEEEEEEEECC T ss_conf ------2488548999998209 No 13 >>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} (A:152-257) Probab=99.62 E-value=5.8e-16 Score=146.10 Aligned_cols=106 Identities=22% Similarity=0.388 Sum_probs=103.3 Q ss_pred HHCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 00002343322111134445666426534666544203651786656310342068878875433234444444100038 Q gi|254780897|r 158 VAFEVKETESEIGDKVTVDYTVSVDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAG 237 (473) Q Consensus 158 ~~~~~~~~~~~~gD~v~id~~~~~dg~~~~~~~~~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~laG 237 (473) |+|+..+++++.||.|+|+|.++.||..+++....++.|.+|.+.+++||+++|+||++|+++.|.+++|.+|....++| T Consensus 1 a~~~~~~~~~~~gD~V~v~y~~~~dG~~~~~~~~~~~~~~~g~~~~~~g~~~~l~gmk~Ge~~~~~i~~~~~yg~~~~~~ 80 (106) T 1t11_A 1 ATWKEVDEAAENGKRVSIDFVGSIDGVEFEGGKAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENLKG 80 (106) T ss_dssp CEEEECSCCCCTTCEEEEEEEEESSSSCCTTCEEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTTSS T ss_pred CCCCCCCHHHCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCC T ss_conf 36413655544587899987875668424577567738995688666005554201345550478886577443320024 Q ss_pred CCEEEEEEHHHHHCCCCCCCCHHHHH Q ss_conf 73046761011002467776747887 Q gi|254780897|r 238 KKVRLNFSIKEVFSPLPVVVNNDLAV 263 (473) Q Consensus 238 k~v~f~v~v~~I~~~~~pel~def~k 263 (473) +.+.|+|+|++|+++.+|++||+||. T Consensus 81 ~~~~~~V~l~~v~~~~~pel~De~aa 106 (106) T 1t11_A 81 KAAKFAIKVNKVEARELPELNDEFVA 106 (106) T ss_dssp CEEEECCCEEEEEEEECCCCSTGGGG T ss_pred CCHHEEEEECCCCCCCCCCCCHHHHH T ss_conf 32010011013344557766789999 No 14 >>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain protein, rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A (A:1-64,A:121-158) Probab=99.48 E-value=9.6e-15 Score=136.34 Aligned_cols=97 Identities=21% Similarity=0.309 Sum_probs=90.5 Q ss_pred CCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE Q ss_conf 32211113444566642653466654420365178665631034206887887543323444444410003873046761 Q gi|254780897|r 166 ESEIGDKVTVDYTVSVDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKVRLNFS 245 (473) Q Consensus 166 ~~~~gD~v~id~~~~~dg~~~~~~~~~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~laGk~v~f~v~ 245 (473) .++.||.|+|+|.++.||+.|+ ..++.+.+|.++++|||+++|+||++|++++|.+++|++| .+|||++.|+|+ T Consensus 2 ~v~~GD~V~I~Y~~~~dG~~fd---stp~~~~lG~g~vipGleeaL~GMk~GE~~~~~i~p~~ay---G~~g~~~~~~v~ 75 (102) T 3cgm_A 2 KVGQDKVVTIRYTLQVEGEVLD---QGELSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAY---GLAGKDLDFQVE 75 (102) T ss_dssp BCCTTEEEEEEEEEEETTEEEE---EEEEEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTT---CTTTCCEEEEEE T ss_pred CCCCCCEEEEEEEEEECCEEEE---CCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEHHHCC---CCCCCEEEEEEE T ss_conf 5179999999999998999964---7987999689876778999875323464315872044304---567987899999 Q ss_pred HHHHHCCCCCCCCHHHHHHHCCC Q ss_conf 01100246777674788750236 Q gi|254780897|r 246 IKEVFSPLPVVVNNDLAVRLGFE 268 (473) Q Consensus 246 v~~I~~~~~pel~def~k~~~~~ 268 (473) |.+|+++.+||+|++|++.+|.. T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~ 98 (102) T 3cgm_A 76 VVKVREATPEELLHGHAHPSGHH 98 (102) T ss_dssp EEEEEECCHHHHHHTSCCSSSCC T ss_pred EEEEECCCHHHHHCCCCCCCCCC T ss_conf 99987499899951887788746 No 15 >>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} (A:1-70,A:125-196) Probab=99.40 E-value=1.4e-13 Score=127.08 Aligned_cols=99 Identities=16% Similarity=0.261 Sum_probs=90.0 Q ss_pred CCCCCCEEEEEEEEEE-CCCCCCCCCCC-CEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 3221111344456664-26534666544-203651786656310342068878875433234444444100038730467 Q gi|254780897|r 166 ESEIGDKVTVDYTVSV-DNVILEDQSKK-NVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKVRLN 243 (473) Q Consensus 166 ~~~~gD~v~id~~~~~-dg~~~~~~~~~-~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~laGk~v~f~ 243 (473) .++.||+|+|+|.++. ||+.|+..... .++|.+|.+.++|+|+++|+||++|++++|.+.+|++| .+||||++.|. T Consensus 2 ~~~~gD~V~i~Y~~~~~dG~~~ess~~~~p~~~~lG~~~~i~g~eeaL~Gmk~Ge~~~i~i~p~~~y--Gelag~~l~f~ 79 (142) T 2kfw_A 2 KVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAY--GQLAGQNLKFN 79 (142) T ss_dssp CCCSSCEEEEEEEEEETTTEEEEECCTTSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTS--SCTSCCCCEEE T ss_pred CCCCCCEEEEEEEEEECCCCEEEECCCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEEECHHHCC--CCCCCCEEEEE T ss_conf 2479999999999997999999867899987999579985457988632673340267872144404--53679878999 Q ss_pred EEHHHHHCCCCCCCCHHHHHHHC Q ss_conf 61011002467776747887502 Q gi|254780897|r 244 FSIKEVFSPLPVVVNNDLAVRLG 266 (473) Q Consensus 244 v~v~~I~~~~~pel~def~k~~~ 266 (473) |+|.+|++.++|||+..++...+ T Consensus 80 ~~v~~vr~~~~~e~~~~~~~~~~ 102 (142) T 2kfw_A 80 VEVVAIREATEEELAHGHVHGAH 102 (142) T ss_dssp EEECCCBCCCHHHHHHTCSSCTT T ss_pred EEEEEEECCCHHHHHHCCCCCCC T ss_conf 99999987988789638754788 No 16 >>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} (A:1-69,A:125-171) Probab=99.37 E-value=1.9e-13 Score=125.85 Aligned_cols=103 Identities=16% Similarity=0.259 Sum_probs=93.0 Q ss_pred CCCCCCEEEEEEEEEE-CCCCCCCCCC-CCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 3221111344456664-2653466654-4203651786656310342068878875433234444444100038730467 Q gi|254780897|r 166 ESEIGDKVTVDYTVSV-DNVILEDQSK-KNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKVRLN 243 (473) Q Consensus 166 ~~~~gD~v~id~~~~~-dg~~~~~~~~-~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~laGk~v~f~ 243 (473) +++.||.|+|+|.++. ||+.++.... ..+.|.+|++.++|||+++|+||++||+++|.+.+|.+| -||||++.|. T Consensus 2 ~a~~GD~VtI~Y~~~l~dG~~iest~~~~p~~f~lG~g~vIpGleeaL~GMk~GE~~~i~Vpp~~aY---G~ag~~~~~~ 78 (116) T 2k8i_A 2 KVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAY---GLAGQNLKFN 78 (116) T ss_dssp CCCTTEEEEEEEEEEETTSCEEEECCSSSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSS---CSCCCEEEEE T ss_pred CCCCCCEEEEEEEEEECCCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC---CCCCCEEEEE T ss_conf 1279999999999997999999968899981999277201068998764334660069996120045---7789888999 Q ss_pred EEHHHHHCCCCCCCCHHHHHHHC-CCCHH Q ss_conf 61011002467776747887502-36557 Q gi|254780897|r 244 FSIKEVFSPLPVVVNNDLAVRLG-FESES 271 (473) Q Consensus 244 v~v~~I~~~~~pel~def~k~~~-~~t~~ 271 (473) |+|+.|+.+..|||++.+++..+ +++.+ T Consensus 79 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 107 (116) T 2k8i_A 79 VEVVAIREATEEELAHGHVHGAHDHHHDH 107 (116) T ss_dssp EEEEEEEECCSHHHHHTSCSSCSCSSSCS T ss_pred EEEEEEECCCHHHHHCCCCCCCCCCCCCC T ss_conf 99999976998999639876888754321 No 17 >>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} (A:) Probab=99.22 E-value=3.3e-13 Score=123.99 Aligned_cols=159 Identities=11% Similarity=-0.038 Sum_probs=136.0 Q ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-C--CCCCCCCCCCEEEEEEEEE-EC Q ss_conf 378820578876227877621113564310012111157899999976431000-0--2343322111134445666-42 Q gi|254780897|r 107 EGTVDLKLRLSYDILPQIEISSFDDLQVTQDICEVDEKEIDRQMAEIAKNNVAF-E--VKETESEIGDKVTVDYTVS-VD 182 (473) Q Consensus 107 ~~~~~~~~~~~~ev~Pei~l~~y~~i~i~~~~~~vtd~~Id~~i~~l~~~~~~~-~--~~~~~~~~gD~v~id~~~~-~d 182 (473) ...++++|+++++++|++++++|+++.+..+...+++++++..+......+... . ..++.++.||.|.++|.+. .| T Consensus 4 ~~~~~~e~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~g~g~~~~~~gd~v~~~y~~~~~~ 83 (280) T 1q1c_A 4 SHHHHHHSSGLVPRGSHMTAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLD 83 (280) T ss_dssp -------------------------------------CCEECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETT T ss_pred CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEEEECC T ss_conf 44443200246788654333342022234666777767730067578988999987606987798999999999999799 Q ss_pred CCCCCCCCCCC--EEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCCCCHH Q ss_conf 65346665442--0365178665631034206887887543323444444410003873046761011002467776747 Q gi|254780897|r 183 NVILEDQSKKN--VQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKVRLNFSIKEVFSPLPVVVNND 260 (473) Q Consensus 183 g~~~~~~~~~~--~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~laGk~v~f~v~v~~I~~~~~pel~de 260 (473) |..+.+....+ +.+.+|.+.+++||.++|.||++|+++.+.+.++..|....++|+...+.+.+.+|+....+..++. T Consensus 84 G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~m~~Ge~~~~~v~~~~~yg~~~~~~~~~~~~~~v~~ve~~~~~~~~~~ 163 (280) T 1q1c_A 84 GTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLT 163 (280) T ss_dssp SCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEECEECC T ss_pred CCEEEECCCCCCCEEEECCCCCEEEEHHHHHCCCCCCCEEEEEECHHHHCCCCCCCCCCCCCCEEEEEEEEEEEECCCCC T ss_conf 99999788789897997688885423775108940798899999979906755667887999717999999886045554 Q ss_pred HHHHH Q ss_conf 88750 Q gi|254780897|r 261 LAVRL 265 (473) Q Consensus 261 f~k~~ 265 (473) +.... T Consensus 164 ~~~~~ 168 (280) T 1q1c_A 164 EEEDG 168 (280) T ss_dssp TTCSS T ss_pred CCCCC T ss_conf 44776 No 18 >>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} (A:1-136) Probab=98.88 E-value=2.7e-10 Score=100.59 Aligned_cols=124 Identities=6% Similarity=-0.067 Sum_probs=100.1 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHH Q ss_conf 643100121111578999999764310000-2343322111134445666426534666544203651786656310342 Q gi|254780897|r 132 LQVTQDICEVDEKEIDRQMAEIAKNNVAFE-VKETESEIGDKVTVDYTVSVDNVILEDQSKKNVQFIVGSADLFSETTEI 210 (473) Q Consensus 132 i~i~~~~~~vtd~~Id~~i~~l~~~~~~~~-~~~~~~~~gD~v~id~~~~~dg~~~~~~~~~~~~~~lg~~~~~~~f~~~ 210 (473) +.++.+..++++++++......+.....-. .-++.++.||.|+|+|.++.+|..+.+....++.+.+|.+.+++||+++ T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~g~g~~~p~~gd~V~v~y~~~l~g~~~~~~~~~~~~~~~g~~~~i~G~~~~ 84 (136) T 1p5q_A 5 HHHHHHSSGLVPRGSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLERA 84 (136) T ss_dssp -----------------CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEETTEEEEEEEEEEETTCGGGGTCCHHHHHH T ss_pred CCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEECCCEEEEECCCCCCCCHHHHHHH T ss_conf 54556733356456355589988999985767988989899899999999899034568625896167766731899999 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC------CEEEEEEHHHHHCCCCC Q ss_conf 0688788754332344444441000387------30467610110024677 Q gi|254780897|r 211 LVGLKTGDQKEIERFFPEDHSIKDLAGK------KVRLNFSIKEVFSPLPV 255 (473) Q Consensus 211 liG~k~Gd~~~~~~~~P~d~~~~~laGk------~v~f~v~v~~I~~~~~p 255 (473) |.||++|+++.+.+.++..|....++|+ ++.|+|+|++|+....| T Consensus 85 l~~M~~Ge~~~~~ip~~~~yg~~g~~~~~ip~~s~l~f~iel~~i~~~~~~ 135 (136) T 1p5q_A 85 IQRXEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKES 135 (136) T ss_dssp HTTCCTTCEEEEEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCG T ss_pred HHHCCCCCEEEEEECHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCH T ss_conf 983787888999967477502136876689975405899864022233453 No 19 >>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} (A:1-82,A:135-151) Probab=98.64 E-value=3.7e-08 Score=83.50 Aligned_cols=82 Identities=26% Similarity=0.453 Sum_probs=70.9 Q ss_pred CCCCCCEEEEEEEEEE-CCCCCC---------------CCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 3221111344456664-265346---------------665442036517866563103420688788754332344444 Q gi|254780897|r 166 ESEIGDKVTVDYTVSV-DNVILE---------------DQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPED 229 (473) Q Consensus 166 ~~~~gD~v~id~~~~~-dg~~~~---------------~~~~~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d 229 (473) .|+.||.|.|+|.++. ||..|. +...+.+.+.+|++.++|||+++|.||++|+++.+.+.+|.. T Consensus 1 ~a~~GD~V~v~Y~g~l~dG~vfdss~~~~~~~~~~~~~~~~~~p~~~~lG~g~vI~G~eeaL~gM~~Ge~~~v~Vpp~~a 80 (99) T 1ix5_A 1 XVDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKA 80 (99) T ss_dssp CCCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTS T ss_pred CCCCCCEEEEEEEEEECCCCEEEECCHHHCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCEEEEEECHHHH T ss_conf 93698999999999979999999670463411344444457888899967987026799872675799679997598990 Q ss_pred CCCCCCCCCCEEEEEEHHHHH Q ss_conf 441000387304676101100 Q gi|254780897|r 230 HSIKDLAGKKVRLNFSIKEVF 250 (473) Q Consensus 230 ~~~~~laGk~v~f~v~v~~I~ 250 (473) | -||||...|+++|.+|- T Consensus 81 Y---G~~~~~~~~~~~~~~~~ 98 (99) T 1ix5_A 81 Y---GLAGKDLVFTIKIIEVV 98 (99) T ss_dssp S---CSTTCCEEEECCBCCCB T ss_pred C---CCCCCEEEEEEEEEEEE T ss_conf 6---87898689999999986 No 20 >>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} (A:) Probab=98.50 E-value=2.2e-07 Score=77.30 Aligned_cols=88 Identities=14% Similarity=0.206 Sum_probs=75.9 Q ss_pred CCCCCCCEEEEEEEEE-ECCCCCCCCCC--CCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC--- Q ss_conf 3322111134445666-42653466654--42036517866563103420688788754332344444441000387--- Q gi|254780897|r 165 TESEIGDKVTVDYTVS-VDNVILEDQSK--KNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGK--- 238 (473) Q Consensus 165 ~~~~~gD~v~id~~~~-~dg~~~~~~~~--~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~laGk--- 238 (473) ++++.||.|+|+|.+. .||..|++... ..+.+.+|.+++++||+++|.||++|+++.+.+.++..|.....+|+ T Consensus 4 ~~~~~gd~V~v~y~~~l~~G~~~d~t~~~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~ip~~~aYg~~g~~~~ipp 83 (102) T 2pbc_A 4 IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKIPG 83 (102) T ss_dssp CCCCTTCEEEEEEEEECTTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBTTTBCT T ss_pred CCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCEECCCCEEECCCHHHHHCCCCCCCEEEEEECHHHHCCCCCCCCEECC T ss_conf 87999999999999998489899873730112100268641023232253131389746999898996857788971889 Q ss_pred --CEEEEEEHHHHHCC Q ss_conf --30467610110024 Q gi|254780897|r 239 --KVRLNFSIKEVFSP 252 (473) Q Consensus 239 --~v~f~v~v~~I~~~ 252 (473) ...|+|++.+|... T Consensus 84 ~~~li~~Vel~~v~~~ 99 (102) T 2pbc_A 84 GATLVFEVELLKIERR 99 (102) T ss_dssp TCCEEEEEEEEEEGGG T ss_pred CCCEEEEEEEEEECCC T ss_conf 9979999999995466 No 21 >>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=98.23 E-value=1.5e-06 Score=70.74 Aligned_cols=93 Identities=12% Similarity=0.133 Sum_probs=78.7 Q ss_pred CCCCCCCEEEEEEEEE-ECCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC------CC Q ss_conf 3322111134445666-4265346665442036517866563103420688788754332344444441000------38 Q gi|254780897|r 165 TESEIGDKVTVDYTVS-VDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDL------AG 237 (473) Q Consensus 165 ~~~~~gD~v~id~~~~-~dg~~~~~~~~~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~l------aG 237 (473) +.+..||.|+++|.+. .||..+. +...+.+.+|.+++++||+.+|.||++|+.+.+.+..+..|..... ++ T Consensus 32 ~~~~~gd~V~v~y~~~l~dg~~~~--~s~~~~~~~g~~~~i~g~~~~l~~M~~Ge~~~~~ip~~~ayG~~g~~~~~Ip~~ 109 (135) T 2d9f_A 32 SRPVKGQVVTVHLQTSLENGTRVQ--EEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPH 109 (135) T ss_dssp CCCCTTSEEEEEEEEEESSSCEEE--EEEEEEEETTSCCSCTTTTTTGGGSCTTCEEEEEECHHHHTCTTCCSSSCCCTT T ss_pred CCCCCCCEEEEEEEEEECCCCEEC--CCCCCEEECCCCCCCHHHHHHHHHHCCCCEEEEEECHHHCCCCCCCCCCCCCCC T ss_conf 889998999999999977798901--568832771587521477532455138973999999899917678888972959 Q ss_pred CCEEEEEEHHHHHCCCCCCCCH Q ss_conf 7304676101100246777674 Q gi|254780897|r 238 KKVRLNFSIKEVFSPLPVVVNN 259 (473) Q Consensus 238 k~v~f~v~v~~I~~~~~pel~d 259 (473) .++.|+|+|.+|.....++.+. T Consensus 110 s~l~feiel~~v~~~~~~~~d~ 131 (135) T 2d9f_A 110 AALCLEVTLKTAVDRPDLEMSG 131 (135) T ss_dssp CCEEEEEEEEEEESSCSSSSCC T ss_pred CEEEEEEEEEEEECCCCCCCCC T ss_conf 8399999999855477755468 No 22 >>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} (A:118-132,A:255-301,A:415-432) Probab=98.10 E-value=4e-07 Score=75.21 Aligned_cols=69 Identities=16% Similarity=0.229 Sum_probs=60.1 Q ss_pred CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 77674788750236557899999988789999777776699999999864003479999999977678999 Q gi|254780897|r 255 VVVNNDLAVRLGFESESAMRGLCSQKIKQHSEFLVRQKVKRQILDYISNKYTFDVPESLVENEYNGILQKV 325 (473) Q Consensus 255 pel~def~k~~~~~t~~elk~~ik~~l~~~~~~~~~~~~~~~i~~~L~~~~~~~lPe~lv~~e~~~~~~~~ 325 (473) |-+.-+||+ +++|+++||+.||++|+.+.+....+..+++++++|++.++|++|++||+++++++++++ T Consensus 11 ~~~~~eFA~--efeTLeeLK~~Irk~Le~e~e~~~~~~~k~~ild~Lve~~~~eiPeslV~~Ev~~l~~~~ 79 (80) T 1w26_A 11 PIVEVRFGV--EDGSVEGLRAEVRKNXERELKSAIRNRVKSQAIEGLVKANDIDAKVTEKETTFNELXNQQ 79 (80) T ss_dssp EECCCTTTC--SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCSBCCEEECCHHHHTCCC T ss_pred EEEECHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHCCC T ss_conf 301036076--303799999998889999999999988778899987450565597654446799971678 No 23 >>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A (A:) Probab=98.08 E-value=8e-06 Score=64.81 Aligned_cols=88 Identities=7% Similarity=0.079 Sum_probs=71.6 Q ss_pred CCCCCCCEEEEEEEEEE-C-CCCCCCCC--CCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC----- Q ss_conf 33221111344456664-2-65346665--442036517866563103420688788754332344444441000----- Q gi|254780897|r 165 TESEIGDKVTVDYTVSV-D-NVILEDQS--KKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDL----- 235 (473) Q Consensus 165 ~~~~~gD~v~id~~~~~-d-g~~~~~~~--~~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~l----- 235 (473) ..+..||.|.++|.+.. + |..+.+.. ...+.+.+|.+.+++||+.+|.||++|+.+.+.+.....|..... T Consensus 32 ~~~~~gd~V~v~y~~~~~~~~~~~~~s~~~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~ipp~~aYG~~g~~~~ip 111 (129) T 2vn1_A 32 NIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIP 111 (129) T ss_dssp GSCCTTCEEEEEEEEEETTTCCEEEEGGGTTCCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBTTTBC T ss_pred CCCCCCCEEEEEEEEEEECCCEECCCCCCCCCCEEEEECCCEEEEEHHHHHHHEEECCEEEEEECHHHCCCCCCCCCCCC T ss_conf 98998999999999998038812010125542112231154054220121020251304799989899638878799869 Q ss_pred CCCCEEEEEEHHHHHCC Q ss_conf 38730467610110024 Q gi|254780897|r 236 AGKKVRLNFSIKEVFSP 252 (473) Q Consensus 236 aGk~v~f~v~v~~I~~~ 252 (473) ++.++.|+|+|.+|+.. T Consensus 112 p~s~l~f~Iel~~i~~~ 128 (129) T 2vn1_A 112 GNSVLLFEIELLSFREL 128 (129) T ss_dssp TTCCEEEEEEEEEEECC T ss_pred CCCCEEEEEEEEEEECC T ss_conf 59829999999988807 No 24 >>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} (A:) Probab=98.08 E-value=5.2e-06 Score=66.27 Aligned_cols=99 Identities=12% Similarity=0.124 Sum_probs=81.8 Q ss_pred CCCCCCEEEEEEEEE-ECCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCC Q ss_conf 322111134445666-4265346665442036517866563103420688788754332344444441000-----3873 Q gi|254780897|r 166 ESEIGDKVTVDYTVS-VDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDL-----AGKK 239 (473) Q Consensus 166 ~~~~gD~v~id~~~~-~dg~~~~~~~~~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~l-----aGk~ 239 (473) .+..||.|.+.|.|. .||..|.........+.++.+.+++||+.+|.||++|+.+.+.+....-|..... .+.+ T Consensus 52 ~~~~gd~V~v~y~g~~~dG~~~~s~~~~~~~~~~~~~~~i~g~~~~l~~M~~Ge~~~~~ipp~laYG~~g~~~~IPp~s~ 131 (167) T 1jvw_A 52 APAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNEVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSP 131 (167) T ss_dssp CCCTTCCEEEEEEEECTTSCEEEEHHHHTSCEEECGGGSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCSSSSSCTTCC T ss_pred CCCCCCEEEEEEEEEECCCCEEEEEECCCCCEECCCCCCHHHHHHHHHCCCCCCEEEEEECHHHCCCCCCCCCCCCCCCC T ss_conf 79998999999999986994997774478750228987418899987133479767999898996477888997295994 Q ss_pred EEEEEEHHHHHCCCCCCCCHHHHHH Q ss_conf 0467610110024677767478875 Q gi|254780897|r 240 VRLNFSIKEVFSPLPVVVNNDLAVR 264 (473) Q Consensus 240 v~f~v~v~~I~~~~~pel~def~k~ 264 (473) ..|+|++.+|.....+.....+... T Consensus 132 L~feiel~~i~~~~~~~~~~~~~~~ 156 (167) T 1jvw_A 132 LEFDVELISIKDGGKGRTAEEVDEI 156 (167) T ss_dssp EEEEEEEEEEGGGCCSCBHHHHHHH T ss_pred EEEEEEEEEEECCCCCCCCCCHHHH T ss_conf 9999999998758988770028999 No 25 >>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} (A:) Probab=98.02 E-value=1.2e-05 Score=63.45 Aligned_cols=86 Identities=16% Similarity=0.226 Sum_probs=71.2 Q ss_pred CCCCCCCEEEEEEEEEE-CCCCCCCCCC--CCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC---- Q ss_conf 33221111344456664-2653466654--4203651786656310342068878875433234444444100038---- Q gi|254780897|r 165 TESEIGDKVTVDYTVSV-DNVILEDQSK--KNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAG---- 237 (473) Q Consensus 165 ~~~~~gD~v~id~~~~~-dg~~~~~~~~--~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~laG---- 237 (473) ..+..||.|.++|.+.. ||..|..... ..+.+.+|.+.+++||..+|.||++|+++.+-+.....|......+ T Consensus 20 ~~~~~~d~V~i~y~~~~~~G~~~~~s~~~~~p~~~~lg~~~~i~G~~~~l~~M~~Ge~~~~~ip~~~aYg~~g~~~~ip~ 99 (113) T 1yat_A 20 TFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPP 99 (113) T ss_dssp CCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEECGGGTTTTTCBTTTBCT T ss_pred CCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEEECCCCEEECCCCCCCCCCCCCEEEEEECHHHHCCCCCCCCCCCC T ss_conf 78999999999999998048899725557722666511562210234000245389899999773880556678996794 Q ss_pred -CCEEEEEEHHHHH Q ss_conf -7304676101100 Q gi|254780897|r 238 -KKVRLNFSIKEVF 250 (473) Q Consensus 238 -k~v~f~v~v~~I~ 250 (473) ....|+|+|.+|+ T Consensus 100 ~~~li~~iel~~v~ 113 (113) T 1yat_A 100 NSTLVFDVELLKVN 113 (113) T ss_dssp TCCEEEEEEEEEEC T ss_pred CCEEEEEEEEEEEC T ss_conf 98099999999969 No 26 >>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} (A:) Probab=97.96 E-value=1.3e-05 Score=63.13 Aligned_cols=86 Identities=14% Similarity=0.217 Sum_probs=71.4 Q ss_pred CCCCCCCEEEEEEEEEE-CCCCCCCCC--CCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC---- Q ss_conf 33221111344456664-265346665--44203651786656310342068878875433234444444100038---- Q gi|254780897|r 165 TESEIGDKVTVDYTVSV-DNVILEDQS--KKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAG---- 237 (473) Q Consensus 165 ~~~~~gD~v~id~~~~~-dg~~~~~~~--~~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~laG---- 237 (473) ..+..||.|.++|.+.. ||..|+... ..-+.+.+|.+.+++||+.+|.||++|+++.+.+....-|......+ T Consensus 14 ~~~~~~d~V~v~y~~~~~dg~~~~~t~~~~~p~~~~~g~~~~~~Gl~~~l~~M~~Ge~~~~~ip~~laYG~~g~~~~ipp 93 (107) T 2ppn_A 14 TFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPP 93 (107) T ss_dssp CCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBTTTBCT T ss_pred CCCCCCCEEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEECHHHHCCCCCCCCCCCC T ss_conf 57999999999999981288099862001103237616623001334552566579878999998995978789988991 Q ss_pred -CCEEEEEEHHHHH Q ss_conf -7304676101100 Q gi|254780897|r 238 -KKVRLNFSIKEVF 250 (473) Q Consensus 238 -k~v~f~v~v~~I~ 250 (473) .+..|+|++.+|+ T Consensus 94 ~s~l~f~iel~~vk 107 (107) T 2ppn_A 94 HATLVFDVELLKLE 107 (107) T ss_dssp TCCEEEEEEEEEEC T ss_pred CCCEEEEEEEEEEC T ss_conf 99199999999979 No 27 >>1fd9_A Protein (macrophage infectivity potentiator protein); FKBP domain, long alpha helix, dimerisation VIA helical interactions, isomerase; 2.41A {Legionella pneumophila} (A:52-213) Probab=97.96 E-value=7.4e-06 Score=65.09 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=74.3 Q ss_pred CCCCCCCEEEEEEEEEE-CCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-----C Q ss_conf 33221111344456664-26534666544203651786656310342068878875433234444444100038-----7 Q gi|254780897|r 165 TESEIGDKVTVDYTVSV-DNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAG-----K 238 (473) Q Consensus 165 ~~~~~gD~v~id~~~~~-dg~~~~~~~~~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~laG-----k 238 (473) ..+..||.|++.|.+.. ||..|.........+.+|.+.+++||+++|.||++|+++.+-+...--|......+ . T Consensus 68 ~~~~~gd~V~v~y~g~l~dG~~~~~s~~~~~~~~~~~~~vi~G~~~~l~~M~~Ge~~~~~Ipp~laYG~~g~~~~IPp~s 147 (162) T 1fd9_A 68 VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNE 147 (162) T ss_dssp CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGGGSCHHHHHHHTTCCTTCEEEEEECGGGTTTTCCCSSSCCTTC T ss_pred CCCCCCCEEEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECHHHCCCCCCCCCCCCCCC T ss_conf 88998999999999998999899636667997202588657679999835878986999989366548888899869698 Q ss_pred CEEEEEEHHHHHCC Q ss_conf 30467610110024 Q gi|254780897|r 239 KVRLNFSIKEVFSP 252 (473) Q Consensus 239 ~v~f~v~v~~I~~~ 252 (473) +..|+|++.+|... T Consensus 148 ~LvfeIeL~~i~~~ 161 (162) T 1fd9_A 148 TLIFKIHLISVKKS 161 (162) T ss_dssp CEEEEEEEEEEECC T ss_pred CEEEEEEEEEEEEC T ss_conf 08999999999818 No 28 >>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKPA; chaperone, peptidyl-prolyl isomerase, heat shock protein, periplasm, FKBP family; HET: MSE; 1.97A {Escherichia coli} (A:67-224) Probab=97.92 E-value=1.4e-05 Score=62.79 Aligned_cols=86 Identities=13% Similarity=0.108 Sum_probs=71.2 Q ss_pred CCCCCCCEEEEEEEEE-ECCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC----CCCCCC Q ss_conf 3322111134445666-42653466654420365178665631034206887887543323444444410----003873 Q gi|254780897|r 165 TESEIGDKVTVDYTVS-VDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIK----DLAGKK 239 (473) Q Consensus 165 ~~~~~gD~v~id~~~~-~dg~~~~~~~~~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~----~laGk~ 239 (473) ..+..||.|++.|.|. .+|..|........++.+|.+.+++||..+|.||++|+++.+-+...--|... --++.+ T Consensus 68 ~~~~~gd~V~v~y~g~~~~G~~~~ss~~~~~~~~~g~~~~i~G~~~~l~~M~~Ge~~~v~iP~~lgyG~~g~~~Ipp~s~ 147 (158) T 1q6h_A 68 EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPGIPPNST 147 (158) T ss_dssp CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGGGSCHHHHHHGGGSCTTCEEEEEECGGGTTTTTCBTTBCTTCC T ss_pred CCCCCCCEEEEEEEEEECCCCEECCCCCCCCCCEECCCCCCHHHHHHHHCCCCCCEEEEEECHHHCCCCCCCCCCCCCCC T ss_conf 87889986899999996999894135787798663068715489999835889987999999788768789999895985 Q ss_pred EEEEEEHHHHH Q ss_conf 04676101100 Q gi|254780897|r 240 VRLNFSIKEVF 250 (473) Q Consensus 240 v~f~v~v~~I~ 250 (473) ..|+|+|.+|+ T Consensus 148 Lvf~ieL~~i~ 158 (158) T 1q6h_A 148 LVFDVELLDVK 158 (158) T ss_dssp EEEEEEEEEEC T ss_pred EEEEEEEEEEC T ss_conf 89999999869 No 29 >>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} (A:) Probab=97.84 E-value=2.2e-05 Score=61.35 Aligned_cols=99 Identities=10% Similarity=0.116 Sum_probs=76.8 Q ss_pred CCCCCCCEEEEEEEEE-ECCCCCCCCC--CCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC-----CC Q ss_conf 3322111134445666-4265346665--44203651786656310342068878875433234444444100-----03 Q gi|254780897|r 165 TESEIGDKVTVDYTVS-VDNVILEDQS--KKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKD-----LA 236 (473) Q Consensus 165 ~~~~~gD~v~id~~~~-~dg~~~~~~~--~~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~-----la 236 (473) +.+..||.|.++|.+. .||..+.... ..-+.+.+|.+.++|||+.+|.||+.|+.+.+.+....-|.... -+ T Consensus 28 ~~p~~gd~V~v~y~~~~~dG~~~~~~~~~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~ipp~layG~~g~~~~ip~ 107 (135) T 1r9h_A 28 VKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPG 107 (135) T ss_dssp CCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBTTTBCT T ss_pred CCCCCCCEEEEEEEEEECCCCEEEECCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEECHHHCCCCCCCCCCCCC T ss_conf 87899899999999998999899971688997267740664007899987428789505999899994267788998697 Q ss_pred CCCEEEEEEHHHHHCC-CCCCCCHHHHH Q ss_conf 8730467610110024-67776747887 Q gi|254780897|r 237 GKKVRLNFSIKEVFSP-LPVVVNNDLAV 263 (473) Q Consensus 237 Gk~v~f~v~v~~I~~~-~~pel~def~k 263 (473) +....|+|++.+|... ..++.+..++| T Consensus 108 ~~~lifeIel~~v~~~~~~~~~~~~i~k 135 (135) T 1r9h_A 108 GATLIFEVELFEWSAEDISPDRDGTILR 135 (135) T ss_dssp TCCEEEEEEEEEEEC------------- T ss_pred CCEEEEEEEEEEEECCCCCCCCCCCEEC T ss_conf 9969999999988777588543683869 No 30 >>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A (A:) Probab=97.79 E-value=3.3e-05 Score=59.88 Aligned_cols=83 Identities=13% Similarity=0.163 Sum_probs=67.8 Q ss_pred CCCCCCEEEEEEEEEE-CCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCC Q ss_conf 3221111344456664-2653466654420365178665631034206887887543323444444410003-----873 Q gi|254780897|r 166 ESEIGDKVTVDYTVSV-DNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLA-----GKK 239 (473) Q Consensus 166 ~~~~gD~v~id~~~~~-dg~~~~~~~~~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~la-----Gk~ 239 (473) .+..||.|+++|.+.. ||..+. +...+.+.+|.+.+++||..+|.||++|+.+.+.+....-|...... +.+ T Consensus 29 ~~~~gd~V~v~y~~~l~dg~~~~--~~~~~~~~~~~~~~i~G~~~~l~~M~~Ge~~~~~ipp~~ayG~~g~~~~ipp~s~ 106 (118) T 2awg_A 29 RPVKGQVVTVHLQTSLENGTRVQ--EEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAA 106 (118) T ss_dssp CCCTTSEEEEEEEEECTTSCEEE--EEEEEEEETTSSCSCHHHHHHGGGSCTTCEEEEEECGGGTTTTTCBTTTBCTTCC T ss_pred CCCCCCEEEEEEEEEECCCCEEC--CCEEEEEEEECCCCHHHHHHHHCCCCCCCEEEEEECHHHCCCCCCCCCCCCCCCE T ss_conf 89988999999999988898963--5606999950675404665565276323427997199997367888996394981 Q ss_pred EEEEEEHHHHH Q ss_conf 04676101100 Q gi|254780897|r 240 VRLNFSIKEVF 250 (473) Q Consensus 240 v~f~v~v~~I~ 250 (473) ..|+|+|.+|+ T Consensus 107 l~f~iel~~v~ 117 (118) T 2awg_A 107 LCLEVTLKTAV 117 (118) T ss_dssp EEEEEEEEEEE T ss_pred EEEEEEEEEEE T ss_conf 99999999977 No 31 >>2ke0_A Peptidyl-prolyl CIS-trans isomerase; bupsa.00130.A, FK506 binding protein FKBP, structural genomics; NMR {Burkholderia pseudomallei} (A:) Probab=97.71 E-value=9.8e-05 Score=56.07 Aligned_cols=85 Identities=16% Similarity=0.278 Sum_probs=67.7 Q ss_pred CCCCCCCEEEEEEEEEE-CCCCCCCCCCC--CEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC----- Q ss_conf 33221111344456664-26534666544--20365178665631034206887887543323444444410003----- Q gi|254780897|r 165 TESEIGDKVTVDYTVSV-DNVILEDQSKK--NVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLA----- 236 (473) Q Consensus 165 ~~~~~gD~v~id~~~~~-dg~~~~~~~~~--~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~la----- 236 (473) ..+..||.|.++|.+.. ||..+...... -+.+.+|.+.+++||..+|.+|+.|+...+.+....-|...... T Consensus 25 ~~p~~~d~V~i~y~~~l~dG~~~~~~~~~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip~~~aYG~~g~~~~Ipp 104 (117) T 2ke0_A 25 AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPP 104 (117) T ss_dssp CBCCTTCEEEEEEEEECTTSCCCCBTTTTTCCEEEETTCSSSCHHHHHHHTTCBTTCEEEEEECTTTTTCSSCSSSSSCT T ss_pred CCCCCCCEEEEEEEEEEECCEEEEECCCCCCCEEEEECCCCCCCHHHHHHCCCCCCCEEEEEECCHHHCCCCCCCCCCCC T ss_conf 86899988999998676044588760335688899968976472265774667689999999890997787789986595 Q ss_pred CCCEEEEEEHHHH Q ss_conf 8730467610110 Q gi|254780897|r 237 GKKVRLNFSIKEV 249 (473) Q Consensus 237 Gk~v~f~v~v~~I 249 (473) +.++.|+|+|.+| T Consensus 105 ~~~li~~iel~~I 117 (117) T 2ke0_A 105 NATLVFEVELLDV 117 (117) T ss_dssp TCCEEEEEEEEEC T ss_pred CCEEEEEEEEEEC T ss_conf 9809999999989 No 32 >>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} (A:) Probab=97.65 E-value=7.7e-05 Score=56.94 Aligned_cols=88 Identities=13% Similarity=0.108 Sum_probs=69.2 Q ss_pred CCCCCCEEEEEEEEE-ECCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC------CCC Q ss_conf 322111134445666-4265346665442036517866563103420688788754332344444441000------387 Q gi|254780897|r 166 ESEIGDKVTVDYTVS-VDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDL------AGK 238 (473) Q Consensus 166 ~~~~gD~v~id~~~~-~dg~~~~~~~~~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~l------aGk 238 (473) ....||.|.+.|.+. .||..|. +.....+.+|.+.+++||..+|.||++|+++.+.+...--|..... .+- T Consensus 59 ~p~~gd~V~v~y~g~l~dG~~fd--s~~~~~~~~~~~~~i~G~~~~l~~M~~Gek~~~~ipp~~aYG~~g~~~~~iPp~s 136 (157) T 2jwx_A 59 RPVKGQVVTVHLQTSLENGTRVQ--EEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHA 136 (157) T ss_dssp CCCTTEEEEEEEEEECTTSCEEE--EEEEEEEETTTTSSCHHHHHHTTTSCTTCEEEEEECGGGTTTTTCCSSSCCCTTC T ss_pred CCCCCCEEEEEEEEEECCCCCCC--CCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEECHHHCCCCCCCCCCCCCCCC T ss_conf 98989999999999988898945--6687436627873017899874467689868998899999176788899739698 Q ss_pred CEEEEEEHHHHHCCCCC Q ss_conf 30467610110024677 Q gi|254780897|r 239 KVRLNFSIKEVFSPLPV 255 (473) Q Consensus 239 ~v~f~v~v~~I~~~~~p 255 (473) ...|+|+|.+|....-+ T Consensus 137 ~LifeIeL~~i~~~~~~ 153 (157) T 2jwx_A 137 ALCLEVTLKTAVDLEHH 153 (157) T ss_dssp CEEEEEEEEEEEECSCC T ss_pred EEEEEEEEEEEECCHHC T ss_conf 49999999762852002 No 33 >>1pbk_A FKBP25, EC 5.2.1.8; FKBP12 homologous domain of HFKBP25, isomerase; HET: RAP; 2.50A {Homo sapiens} (A:) Probab=97.61 E-value=0.00013 Score=55.01 Aligned_cols=86 Identities=19% Similarity=0.242 Sum_probs=66.6 Q ss_pred CCCCCCCEEEEEEEEEE-CCCCCCCC---------CCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC- Q ss_conf 33221111344456664-26534666---------54420365178665631034206887887543323444444410- Q gi|254780897|r 165 TESEIGDKVTVDYTVSV-DNVILEDQ---------SKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIK- 233 (473) Q Consensus 165 ~~~~~gD~v~id~~~~~-dg~~~~~~---------~~~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~- 233 (473) +.+..||.|.++|.+.. ||..+... ....+.+.+|.+.+++||+.+|.||++|+.+.+.+....-|... T Consensus 15 ~~p~~gd~V~v~Y~~~~~dG~~~d~s~~~~~~~~~~~~p~~~~~g~~~~i~g~~~al~~M~~Ge~~~~~ip~~~ayG~~g 94 (116) T 1pbk_A 15 NFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKG 94 (116) T ss_dssp CCCCTTCEEEEEEEEECTTSCEEEECCCSSCCTTTSSCCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTC T ss_pred CCCCCCCEEEEEEEEEECCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCCEEEEEECHHHCCCCCC T ss_conf 78989999999999998999897632564321134797459982687602226656245768988999999899257778 Q ss_pred -----CCCCCCEEEEEEHHHHH Q ss_conf -----00387304676101100 Q gi|254780897|r 234 -----DLAGKKVRLNFSIKEVF 250 (473) Q Consensus 234 -----~laGk~v~f~v~v~~I~ 250 (473) --.+.++.|+|+|.+|. T Consensus 95 ~~~~~ipp~s~l~feiell~ve 116 (116) T 1pbk_A 95 QPDAKIPPNAKLTFEVELVDID 116 (116) T ss_dssp BGGGTBCTTCCEEEEEEEEEEC T ss_pred CCCCCCCCCCEEEEEEEEEEEC T ss_conf 8889829489499999999879 No 34 >>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} (A:) Probab=97.56 E-value=0.00019 Score=53.71 Aligned_cols=96 Identities=4% Similarity=0.003 Sum_probs=70.3 Q ss_pred CCCCCCCEEEEEEEEEE-CCCCCCCCC---CCCEEE-EECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCC---- Q ss_conf 33221111344456664-265346665---442036-517866563103420688788754332344444441000---- Q gi|254780897|r 165 TESEIGDKVTVDYTVSV-DNVILEDQS---KKNVQF-IVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDL---- 235 (473) Q Consensus 165 ~~~~~gD~v~id~~~~~-dg~~~~~~~---~~~~~~-~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~l---- 235 (473) ..+..||.|+++|.+.. +|..+...+ ...+.+ .+|.+.++|||..+|.||++|+.+.|.+....-|..... T Consensus 62 ~~~~~gd~V~v~y~~~~~~g~~~~dss~~~~~~~~~~~~g~~~~i~G~~~~l~~M~~Ge~~~v~ip~~layG~~g~~~~~ 141 (180) T 2f4e_A 62 SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFP 141 (180) T ss_dssp CCBCTTCEEEEEEEEEETTTCCEEEETTTTTCCEEEETTSCCGGGHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBSSSS T ss_pred CCCCCCCEEEEEEEEEEECCCEEEEEEEECCCCEEEECCCCCEECHHHHHHHHHHCCCCEEEEEECHHHCCCCCCCCCCC T ss_conf 98999998999999999069999987540476315640465166266775566622898789998989974778888888 Q ss_pred ---CCCCEEEEEEHHHHHCCCCCCCCHH Q ss_conf ---3873046761011002467776747 Q gi|254780897|r 236 ---AGKKVRLNFSIKEVFSPLPVVVNND 260 (473) Q Consensus 236 ---aGk~v~f~v~v~~I~~~~~pel~de 260 (473) .+..+.|+|+|.+|.....+...+. T Consensus 142 ~IPp~s~L~f~iel~~i~~~~~~~~~~~ 169 (180) T 2f4e_A 142 NVPPMADLLYEVEVIGFDETKEGKARSD 169 (180) T ss_dssp CBCTTCCEEEEEEEEEESCBCCC----- T ss_pred CCCCCCCEEEEEEEEEEECCCCCCCCCC T ss_conf 7393983999999977774666554233 No 35 >>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} (A:362-414) Probab=97.51 E-value=0.00045 Score=50.75 Aligned_cols=53 Identities=13% Similarity=0.355 Sum_probs=48.1 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 289999999999998639998999999870999899999999999999999885 Q gi|254780897|r 375 VTEEEMQSALYQQLGRFPGHEKKMLDHFQKYPNALAELRAPIFEDKVIDHILKS 428 (473) Q Consensus 375 vs~~Ei~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ile~Kv~d~l~~~ 428 (473) ++++.|++.|..+++.| .+|+++++||++|++++..+++-++++.+++||+++ T Consensus 1 ad~~~V~a~iee~A~sY-E~P~eVi~~Y~~~~~~l~~ie~~vlEdqvvd~vL~k 53 (53) T 1w26_A 1 ADEERVKGLIEEXASAY-EDPKEVIEFYSKNKELXDNXRNVALEEQAVEAVLAK 53 (53) T ss_dssp CCHHHHHHHHHHHHTTS-SCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT T ss_pred CCHHHHHHHHHHHHHHC-CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 79999999999999866-899999999985989999999999999999999985 No 36 >>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} (A:) Probab=97.39 E-value=0.00018 Score=53.93 Aligned_cols=86 Identities=10% Similarity=-0.022 Sum_probs=66.0 Q ss_pred CCCCCCCEEEEEEEEEE-CCCCCCCCC---CCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC-----CC Q ss_conf 33221111344456664-265346665---4420365178665631034206887887543323444444410-----00 Q gi|254780897|r 165 TESEIGDKVTVDYTVSV-DNVILEDQS---KKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIK-----DL 235 (473) Q Consensus 165 ~~~~~gD~v~id~~~~~-dg~~~~~~~---~~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~-----~l 235 (473) ..+..||.|.+.|.+.. +|..+...+ ...+.+.+|.+..++||+++|.||++|+++.+.+....-|... -- T Consensus 39 ~~~~~gd~V~v~y~~~~~~g~~~~~~s~~~~~p~~~~~g~~~~i~G~~~~l~~M~~G~~~~v~ipp~laYG~~g~~~~ip 118 (134) T 3b7x_A 39 DLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIP 118 (134) T ss_dssp EECCTTCEEEEEEEEECTTCSSCSEEC-------CEEC-CCCCCHHHHHHHHTCEETCEEEEEECGGGTTTTTCBTTTBC T ss_pred CCCCCCCEEEEEEEEEECCCCEEEECCCCCCCCCEEECCCEEEEHHHHHHHHHCCCCCEEEEEECHHHCCCCCCCCCCCC T ss_conf 99998999999999997369855211333333311111631331123211000025747999999899636888899719 Q ss_pred CCCCEEEEEEHHHHH Q ss_conf 387304676101100 Q gi|254780897|r 236 AGKKVRLNFSIKEVF 250 (473) Q Consensus 236 aGk~v~f~v~v~~I~ 250 (473) ++.+..|+|+|.+|+ T Consensus 119 ~~s~L~feieLl~v~ 133 (134) T 3b7x_A 119 PNTTVLFEIELLDFL 133 (134) T ss_dssp TTCCEEEEEEEEEEC T ss_pred CCCCEEEEEEEEEEE T ss_conf 598399999999987 No 37 >>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} (A:1-166) Probab=97.38 E-value=0.00015 Score=54.53 Aligned_cols=91 Identities=3% Similarity=-0.035 Sum_probs=66.3 Q ss_pred CCCCCCCEEEEEEEEEE-CCCCCCCCCC---CCEE-EEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC----- Q ss_conf 33221111344456664-2653466654---4203-651786656310342068878875433234444444100----- Q gi|254780897|r 165 TESEIGDKVTVDYTVSV-DNVILEDQSK---KNVQ-FIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKD----- 234 (473) Q Consensus 165 ~~~~~gD~v~id~~~~~-dg~~~~~~~~---~~~~-~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~----- 234 (473) ..+..||.|++.|.+.. +|..+...+. ..+. +.++.+.+++||.++|.||++|+++.+.+....-|...- T Consensus 62 ~~~~~gd~V~v~y~g~l~~g~~~~d~t~~~~~~~~~~~~~~~~vi~G~~~~i~~M~~G~~~~v~iP~~layG~~g~~~~~ 141 (166) T 2if4_A 62 SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFP 141 (166) T ss_dssp CCCCTTCEEEEEEEEEETTTCCCCEEHHHHTCCEEEETTSCCGGGHHHHHHHHHCCBTCEEEEEECGGGSSCSSCCCSSS T ss_pred CCCCCCCEEEEEEEEEEECCCEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCEEEEEECHHHHCCCCCCCCCC T ss_conf 89998999999999999259989730577799961421466750147999985198888799998868957766778766 Q ss_pred --CCCCCEEEEEEHHHHHCCCCC Q ss_conf --038730467610110024677 Q gi|254780897|r 235 --LAGKKVRLNFSIKEVFSPLPV 255 (473) Q Consensus 235 --laGk~v~f~v~v~~I~~~~~p 255 (473) -.+.+..|+|+|.+|...... T Consensus 142 ~IPp~s~Lifeiel~~i~~~~~~ 164 (166) T 2if4_A 142 NVPPMADLLYEVEVIGFDETKEG 164 (166) T ss_dssp CCCTTCCEEEEEEEEEEECCCCC T ss_pred CCCCCCHHHHHHHHCCCCCCCCC T ss_conf 54322103555430012223210 No 38 >>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} (A:1-257) Probab=97.35 E-value=0.0005 Score=50.42 Aligned_cols=85 Identities=13% Similarity=0.145 Sum_probs=46.7 Q ss_pred CCCCCEEEEEEEEEE-CCCCCCCCCC--CCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC-----CCCC Q ss_conf 221111344456664-2653466654--4203651786656310342068878875433234444444100-----0387 Q gi|254780897|r 167 SEIGDKVTVDYTVSV-DNVILEDQSK--KNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKD-----LAGK 238 (473) Q Consensus 167 ~~~gD~v~id~~~~~-dg~~~~~~~~--~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~-----laGk 238 (473) +..||.|.++|.+.. +|..+..... .-+.|.+|.+.+++||+++|.||++|+.+.+.+.....|.... -... T Consensus 47 ~~~g~~v~~~y~~~~~~g~~~~s~~~~~~p~~~~~g~~~~~~g~~~~l~~m~~Ge~~~~~ip~~~ayg~~g~~~~~~~~~ 126 (257) T 1kt0_A 47 PMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGSLPKIPSNA 126 (257) T ss_dssp CCBTCEEEEEEEEEC-----CBC------CEEEETTSTTSCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBTTTBCTTC T ss_pred CCCCCEEEEEEEEEECCCCEEEECCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEEECHHHHCCCCCCCCCCCCCC T ss_conf 99999999999999789989973587999879995898801699999972888987999989799588888888889987 Q ss_pred CEEEEEEHHHHHC Q ss_conf 3046761011002 Q gi|254780897|r 239 KVRLNFSIKEVFS 251 (473) Q Consensus 239 ~v~f~v~v~~I~~ 251 (473) ...|.+.+..+.. T Consensus 127 ~~~~~vel~~~~~ 139 (257) T 1kt0_A 127 TLFFEIELLDFKG 139 (257) T ss_dssp CEEEEEEEEEEEC T ss_pred EEEEEEEEHHHHH T ss_conf 5999754243442 No 39 >>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} (A:) Probab=96.99 E-value=0.0012 Score=47.50 Aligned_cols=85 Identities=9% Similarity=0.139 Sum_probs=62.0 Q ss_pred CCCCCCCEEEEEEEEEE-CCCCCCCCCC--CCEEEEECCCCCC------CCHHHHCCCCCCCCCCCCCCCCCCCCCCC-- Q ss_conf 33221111344456664-2653466654--4203651786656------31034206887887543323444444410-- Q gi|254780897|r 165 TESEIGDKVTVDYTVSV-DNVILEDQSK--KNVQFIVGSADLF------SETTEILVGLKTGDQKEIERFFPEDHSIK-- 233 (473) Q Consensus 165 ~~~~~gD~v~id~~~~~-dg~~~~~~~~--~~~~~~lg~~~~~------~~f~~~liG~k~Gd~~~~~~~~P~d~~~~-- 233 (473) ..+..||.|.++|.+.. +|..+..... .-+.+.+|.+..+ +|+..+|.||++|+++.+.+..-.-|... T Consensus 25 ~~~~~gd~V~v~y~g~~~~G~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~g~~~~l~~M~~G~~~~i~iP~~laYG~~g~ 104 (129) T 1u79_A 25 PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGA 104 (129) T ss_dssp CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTTCEEEEEECGGGTTGGGCE T ss_pred CCCCCCCEEEEEEEEEECCCCEEEEEEECCCCEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEECHHHCCCCCCC T ss_conf 98999988889887620278478743515862012115523341144531400101002389669999898997677786 Q ss_pred --------CCCCCCEEEEEEHHHH Q ss_conf --------0038730467610110 Q gi|254780897|r 234 --------DLAGKKVRLNFSIKEV 249 (473) Q Consensus 234 --------~laGk~v~f~v~v~~I 249 (473) --++.++.|+|+|.+| T Consensus 105 ~~~~~~~~ip~~s~Lif~vel~~i 128 (129) T 1u79_A 105 GCKGGSCLIPPASVLLFDIEYIGK 128 (129) T ss_dssp EEETTEEEECTTCCEEEEEEEEEE T ss_pred CCCCCCCCCCCCCEEEEEEEEEEC T ss_conf 886788879959819999999970 No 40 >>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} (A:1-257) Probab=96.48 E-value=0.0022 Score=45.24 Aligned_cols=89 Identities=7% Similarity=-0.069 Sum_probs=69.7 Q ss_pred CCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC------CCCC Q ss_conf 4332211113444566642653466654420365178665631034206887887543323444444410------0038 Q gi|254780897|r 164 ETESEIGDKVTVDYTVSVDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIK------DLAG 237 (473) Q Consensus 164 ~~~~~~gD~v~id~~~~~dg~~~~~~~~~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~------~laG 237 (473) ......||.+.+.|.|...+..+......+.++.++.+..++|++++|.||++|+.+.+.+.--.-|... --++ T Consensus 159 ~~~~~~gd~v~v~y~G~l~~~~~~~~~~~~~p~~~~lg~~i~g~~~~l~~m~~Ge~~~~~ip~~~ayG~~g~~~~~ip~~ 238 (257) T 1kt0_A 159 YSNPNEGATVEIHLEGRCGGRMFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPN 238 (257) T ss_dssp SCCCCTTCEEEEEEEEEETTEEEEEEEEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTT T ss_pred CCCCCCCCEEEEEEEEECCCCEEECCCCCEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEECCHHHCCCCCCCCCCCCCC T ss_conf 78999997699999764188043136764365137766540689999984876775899977156335346644677963 Q ss_pred CCEEEEEEHHHHHCC Q ss_conf 730467610110024 Q gi|254780897|r 238 KKVRLNFSIKEVFSP 252 (473) Q Consensus 238 k~v~f~v~v~~I~~~ 252 (473) .++.|.|.|++++.. T Consensus 239 ~~l~~~vel~~~~~~ 253 (257) T 1kt0_A 239 AELIYEVTLKSFEKA 253 (257) T ss_dssp CCEEEEEEEEEEECC T ss_pred CHHHHHHHHHCCCCC T ss_conf 024555432102345 No 41 >>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} (A:) Probab=93.88 E-value=0.051 Score=34.31 Aligned_cols=72 Identities=6% Similarity=-0.008 Sum_probs=51.2 Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCEEEEEEHHHHHCCC Q ss_conf 26534666544203651786656310342068878875433234444444100------0387304676101100246 Q gi|254780897|r 182 DNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKD------LAGKKVRLNFSIKEVFSPL 253 (473) Q Consensus 182 dg~~~~~~~~~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~------laGk~v~f~v~v~~I~~~~ 253 (473) ++..+......++.+.+|.+.+++|++.+|.||++|+...+.+.-..-|...- -.+.++.|.|.|.+|.+.. T Consensus 199 ~~~~~~~~~~~~~~f~~g~g~vI~G~~~gl~~mk~Ge~~~l~IPp~layG~~g~~~~~Ip~~a~l~f~vel~~~~~~~ 276 (280) T 1q1c_A 199 KDKLFDQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAK 276 (280) T ss_dssp TTEEEEEEEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEECCC T ss_pred CCEEEEECEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHCCCCCCCCCCCCCCCCEEEEEEEEEEEECCC T ss_conf 885675020325641168765284899998538789789999897992877788888729598799999999988577 No 42 >>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} PDB: 3gu0_A (X:351-403) Probab=92.88 E-value=0.11 Score=31.66 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=46.6 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 28999999999999863999899999987099989999999999999999988 Q gi|254780897|r 375 VTEEEMQSALYQQLGRFPGHEKKMLDHFQKYPNALAELRAPIFEDKVIDHILK 427 (473) Q Consensus 375 vs~~Ei~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ile~Kv~d~l~~ 427 (473) |+++|+..+.+..+.-.|.+++....-.+...+.++.+++.|+..|+.+.|++ T Consensus 1 V~deel~k~AE~la~~WGIS~eRAk~lvKsR~Dirnev~~~i~~~KV~dli~e 53 (53) T 3gty_X 1 VNDEELEKEAEELAPFWGISPDRAKSLVKARQDLREELRWAILKRKVLDLLLQ 53 (53) T ss_dssp CCHHHHHHHHTTSTTTTTSCHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHTT T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 79999999999999875999999999998598999999999999999999997 No 43 >>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} (A:71-132,A:370-400) Probab=91.57 E-value=0.57 Score=25.87 Aligned_cols=59 Identities=10% Similarity=0.141 Sum_probs=44.6 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHHHHH-HCEEEE Q ss_conf 2899999999999986399989999998709----9989999999999999999988-535665 Q gi|254780897|r 375 VTEEEMQSALYQQLGRFPGHEKKMLDHFQKY----PNALAELRAPIFEDKVIDHILK-SVQIVD 433 (473) Q Consensus 375 vs~~Ei~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~ile~Kv~d~l~~-~a~i~e 433 (473) |++.||+..|..++.+++.++.++...+... ..+++.|+..|+..+++...+. ++.|.- T Consensus 1 VsD~EVD~aI~~IAqqN~lT~eql~~~L~~qGis~e~fR~qIR~eIl~~rL~q~~V~skI~V~~ 64 (93) T 1m5y_A 1 ISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITIDA 64 (93) T ss_dssp CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTCCC-- T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH T ss_conf 6999999999999987052479999999974998788888889999999987430000013446 No 44 >>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} PDB: 3gu0_A (X:109-116,X:281-350) Probab=86.47 E-value=2 Score=21.46 Aligned_cols=68 Identities=10% Similarity=0.126 Sum_probs=50.5 Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 64003479999999977678999999753486400110--0013456778999999999999999998643874 Q gi|254780897|r 303 NKYTFDVPESLVENEYNGILQKVRFEMSSANQKSQNVD--SIDEEDLQYYHMLAKRRVLTGIVLGTIGEKNNIE 374 (473) Q Consensus 303 ~~~~~~lPe~lv~~e~~~~~~~~~~~l~~~~~~~~~~~--~~~e~~~~~~~~~Aek~vk~~lil~~Ia~~e~I~ 374 (473) +..++++++--++..++...+++ +..|.+.+.+. .+++.+++.++..+-..+|...+..+||++++|. T Consensus 9 E~vEi~ISEkTidy~V~~~Innl----K~E~kYeeyvk~yesEEKl~Ee~K~~~ln~iKk~~aIEkiA~E~~I~ 78 (78) T 3gty_X 9 EIVEIEISDRTLEILVNEAINRL----KREGRYEQIVSSYESEEKFREELKERILDDIKRDRVIEVLAQEKGIS 78 (78) T ss_dssp HHCEEECCHHHHHHHHHHHHHHH----HTTTHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC T ss_pred HHCCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 73666787899999999999899----98655654320345576777889999999999999999999994899 No 45 >>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} (A:354-363,A:524-698) Probab=85.59 E-value=0.81 Score=24.69 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=46.9 Q ss_pred CCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-------------C-CEEEEEEHHHHHCC Q ss_conf 544203651786656310342068878875433234444444100038-------------7-30467610110024 Q gi|254780897|r 190 SKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAG-------------K-KVRLNFSIKEVFSP 252 (473) Q Consensus 190 ~~~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~laG-------------k-~v~f~v~v~~I~~~ 252 (473) +..+|.|.+|.|.+++-++.-+.-|.+|+.-.|..+.|+.-..--+|. + -..|.|++..|.++ T Consensus 102 Sn~EfEFEiGtGav~~~lEs~VTQmsVGQ~A~F~m~lP~~a~~lilAA~~d~~r~rSlLS~~~cLEY~V~LL~V~eP 178 (185) T 3htx_A 102 SNEEIEFEVGTGSMNPHIESEVTQMTVGEYASFKMTPPDAAEALILAVGSDTVRIRSLLSERPCLNYNILLLGVKGP 178 (185) T ss_dssp EEEEEEEEETTTCBCHHHHHHHTTCCTTCEEEEEESSCCSCHHHHHHHCSCHHHHHHHTTSCEEEEEEEEEEEEECS T ss_pred CCCCEEEEECCCCCCHHHHHHHHHEECCCEEEEECCCCCCHHHHEEEECCCHHHHHHHHCHHHHHEEEEEEEEECCC T ss_conf 56504798305623203666652100121568824899773563352047503455550212100148789863478 No 46 >>1te7_A Hypothetical UPF0267 protein YQFB; alpha + beta, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} (A:) Probab=76.06 E-value=3.4 Score=19.71 Aligned_cols=45 Identities=2% Similarity=-0.003 Sum_probs=37.7 Q ss_pred CCCCCEEEEEEHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 0387304676101100246777674788750236557899999988 Q gi|254780897|r 235 LAGKKVRLNFSIKEVFSPLPVVVNNDLAVRLGFESESAMRGLCSQK 280 (473) Q Consensus 235 laGk~v~f~v~v~~I~~~~~pel~def~k~~~~~t~~elk~~ik~~ 280 (473) +.+....+.+.|.+|....+-+|||+-|++=|+ |+++|++.|++. T Consensus 44 ~~~~~~~~~~~I~~V~~~~~~eLt~e~A~qegf-sl~eL~~~l~~i 88 (103) T 1te7_A 44 FEDDGYFCTIEVTATSTVTLDTLTEKHAEQENM-TLTELKKVIADI 88 (103) T ss_dssp TTTEEEEEEEEEEEEEEECSTTTSTHHHHHTTS-CHHHHHHHHHHH T ss_pred CCCCCEEEEEEEEEEEEECHHHCCHHHHHHCCC-CHHHHHHHHHHH T ss_conf 569929999999999998269869889978499-799999999998 No 47 >>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea} (A:55-141) Probab=67.46 E-value=2.1 Score=21.39 Aligned_cols=37 Identities=32% Similarity=0.443 Sum_probs=25.6 Q ss_pred CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHCC Q ss_conf 6310342068878875433234444444100038730467610110024 Q gi|254780897|r 204 FSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKVRLNFSIKEVFSP 252 (473) Q Consensus 204 ~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~laGk~v~f~v~v~~I~~~ 252 (473) .--+-.+|+|+++||.++++. |. | ..+.++|.+|... T Consensus 40 ~SPlG~ALlG~~~Gd~v~~~~--p~--------G--~~~~~~I~~I~~~ 76 (87) T 2pn0_A 40 LAPVGSALLGLAQGDEIEWPK--PG--------G--GVLRVRIVEVTYQ 76 (87) T ss_dssp TSTTHHHHTTCBTTCEEEEEC--TT--------S--SEEEEEEEEEEC- T ss_pred ECHHHHHHHCCCCCCEEEEEC--CC--------C--CEEEEEEEEEEEC T ss_conf 769999970998899999988--99--------9--8899999999868 No 48 >>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli} (A:52-136) Probab=66.40 E-value=2.6 Score=20.65 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=26.5 Q ss_pred CCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHCCCC Q ss_conf 631034206887887543323444444410003873046761011002467 Q gi|254780897|r 204 FSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKVRLNFSIKEVFSPLP 254 (473) Q Consensus 204 ~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~laGk~v~f~v~v~~I~~~~~ 254 (473) .--+-.+|+|+++||++.++. |. | ..+.++|.+|...-. T Consensus 40 ~SPlG~ALlG~~~Gd~v~~~~--p~--------G--~~~~~~I~~I~~~~~ 78 (85) T 3bmb_A 40 MAPVGAALLGLRVGDSIHWEL--PG--------G--VATHLEVLELEYQPE 78 (85) T ss_dssp TSHHHHHHTTCBTTCEEEEEE--TT--------T--EEEEEEEEEEEECTT T ss_pred CCHHHHHHHCCCCCCEEEEEC--CC--------C--CEEEEEEEEEEECCC T ss_conf 698999972997899999998--99--------9--889999999997898 No 49 >>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli} (A:83-158) Probab=64.66 E-value=5.3 Score=18.16 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=24.3 Q ss_pred CCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHC Q ss_conf 5631034206887887543323444444410003873046761011002 Q gi|254780897|r 203 LFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKVRLNFSIKEVFS 251 (473) Q Consensus 203 ~~~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~laGk~v~f~v~v~~I~~ 251 (473) ..--+-.+|+|+++||.+++.+ |. -.+.++|.+|.. T Consensus 38 ~~SPlG~ALlG~~~Gd~v~~~~--p~-----------g~~~~~I~~V~~ 73 (76) T 2p4v_A 38 IDSPMARALLKKEVGDLAVVNT--PA-----------GEASWYVNAIEY 73 (76) T ss_dssp TTSHHHHHSTTCCTTCEEEEEC--SS-----------CEEEEEEEEEEC T ss_pred CCCHHHHHHHCCCCCCEEEEEE--CC-----------CCEEEEEEEEEE T ss_conf 8898999970899999899980--89-----------878999999994 No 50 >>2akh_Y Preprotein translocase SECY subunit; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_Y (Y:41-400) Probab=61.71 E-value=8.4 Score=16.54 Aligned_cols=15 Identities=0% Similarity=-0.035 Sum_probs=6.5 Q ss_pred HHHHHHHHHCCCCCH Q ss_conf 999999753486400 Q gi|254780897|r 323 QKVRFEMSSANQKSQ 337 (473) Q Consensus 323 ~~~~~~l~~~~~~~~ 337 (473) ++..+++++++.... T Consensus 264 ~~ia~~l~k~g~~Ip 278 (360) T 2akh_Y 264 RETADNLKKSGAFVP 278 (360) T ss_pred HHHHHHHHHCCCCCC T ss_conf 999999998589688 No 51 >>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} (A:) Probab=55.25 E-value=4.9 Score=18.38 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=16.5 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 8875023655789999998878999 Q gi|254780897|r 261 LAVRLGFESESAMRGLCSQKIKQHS 285 (473) Q Consensus 261 f~k~~~~~t~~elk~~ik~~l~~~~ 285 (473) |++++||++..+||..++..+..+. T Consensus 59 f~kkLGy~gf~elk~~l~~~~~~~~ 83 (111) T 2o3f_A 59 LCXSLGLKGFQDLXXRVAGDLAKPT 83 (111) T ss_dssp HHHHTTCSSHHHHHHHHHHHHHSGG T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCC T ss_conf 9999667989999999999986225 No 52 >>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus HB27} (A:81-156) Probab=52.79 E-value=6.3 Score=17.52 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=22.0 Q ss_pred CCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHH Q ss_conf 310342068878875433234444444100038730467610110 Q gi|254780897|r 205 SETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKVRLNFSIKEV 249 (473) Q Consensus 205 ~~f~~~liG~k~Gd~~~~~~~~P~d~~~~~laGk~v~f~v~v~~I 249 (473) --+-.+|+|+++||++++.+ |. -.+.++|.+| T Consensus 43 SPlG~ALlG~~~Gd~v~~~~--p~-----------g~~~~~I~~I 74 (76) T 2f23_A 43 SPMGKALLGHRVGDVLSLDT--PK-----------GKREFRVVAI 74 (76) T ss_dssp SHHHHHHTTCCTTCEEEEEE--TT-----------EEEEEEEEEE T ss_pred CHHHHHHHCCCCCCEEEEEC--CC-----------CCEEEEEEEE T ss_conf 98899972899999999984--99-----------8789999998 No 53 >>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} (A:84-158) Probab=50.57 E-value=4 Score=19.13 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=16.2 Q ss_pred CCHHHHCCCCCCCCCCCCCC Q ss_conf 31034206887887543323 Q gi|254780897|r 205 SETTEILVGLKTGDQKEIER 224 (473) Q Consensus 205 ~~f~~~liG~k~Gd~~~~~~ 224 (473) --+-.+|+|+++||++++.+ T Consensus 41 SPlG~ALlG~~~Gd~v~~~~ 60 (75) T 1grj_A 41 SPIARGLIGKEEDDVVVIKT 60 (75) T ss_dssp SHHHHHHTTCBTTCEECC-- T ss_pred CHHHHHHHCCCCCCEEEEEC T ss_conf 98999972899999899983 No 54 >>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, hydrolase; HET: ACI GLC GAL; 1.90A {Bacillus SP} (A:1-105,A:209-370) Probab=49.71 E-value=13 Score=15.11 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=27.0 Q ss_pred CCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 2797699999854899999999999998750738985897 Q gi|254780897|r 8 SEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPG 47 (473) Q Consensus 8 ~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~~ipGFRkG 47 (473) ..|.+.-+.+...-.+|...+-+.++....++-|+|||=- T Consensus 94 ~~Gi~vi~D~V~~Np~V~~~l~~~l~~Wi~~~GVDGfRlD 133 (267) T 1wpc_A 94 NNGIQVYGDVVMDHPEVVNELRNWGVWYTNTLGLDGFRID 133 (267) T ss_dssp HTTCEEEEEECCTCHHHHHHHHHHHHHHHHHHTCSEEEET T ss_pred HCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEC T ss_conf 8899899997246878887788999988744684558641 No 55 >>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP- binding, cytoplasm, inner membrane, nucleotide-binding; HET: ADP; 4.50A {Thermotoga maritima MSB8} (C:208-387) Probab=47.45 E-value=8.7 Score=16.41 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=17.5 Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 507389858970488999986108 Q gi|254780897|r 37 SKANIKGFRPGKVPLSHIKSLYGK 60 (473) Q Consensus 37 ~~~~ipGFRkGKvP~~ii~~~~g~ 60 (473) ....|||+|||+.=...+.+.... T Consensus 131 ~g~~IpGvRpG~~T~~yL~~~i~~ 154 (180) T 3din_C 131 YGGYIPGLRPGRSTEQYLHRVLNR 154 (180) T ss_dssp CBCSSCCCCCTTHHHHHHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 697716989975689999999999 No 56 >>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} PDB: 3gu0_A (X:117-145,X:240-280,X:404-433) Probab=46.89 E-value=14 Score=14.79 Aligned_cols=39 Identities=13% Similarity=0.275 Sum_probs=29.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 236557899999988789999777776699999999864 Q gi|254780897|r 266 GFESESAMRGLCSQKIKQHSEFLVRQKVKRQILDYISNK 304 (473) Q Consensus 266 ~~~t~~elk~~ik~~l~~~~~~~~~~~~~~~i~~~L~~~ 304 (473) .|+|++.|++.+++.-..-+.-.....++.+++++|.+. T Consensus 34 efetleqlkeslkkegkeiydvemkesmreqlleklpev 72 (100) T 3gty_X 34 EFETLEQLKESLKKEGKEIYDVEMKESMREQLLEKLPEV 72 (100) T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHTS T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 300479999998888999999987999999999999828 No 57 >>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, protein transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y (Y:211-434) Probab=45.03 E-value=8.8 Score=16.36 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=14.8 Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 507389858970488999986108 Q gi|254780897|r 37 SKANIKGFRPGKVPLSHIKSLYGK 60 (473) Q Consensus 37 ~~~~ipGFRkGKvP~~ii~~~~g~ 60 (473) ....|||+||||.=...+++.... T Consensus 133 ~g~~IpGirpG~~T~~yL~k~i~~ 156 (224) T 2zjs_Y 133 YGGFIPGIRPGEPTVKFLEHIVSR 156 (224) T ss_dssp TTEECTTBCSSHHHHHHHHHHHHH T ss_pred CCCEECCCCCCHHHHHHHHHHHHH T ss_conf 798843758986689999999999 No 58 >>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A (A:1-101,A:204-394) Probab=42.92 E-value=16 Score=14.35 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=34.8 Q ss_pred CCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCC---CCCHHHH Q ss_conf 2797699999854899999999999998750738985897---0488999 Q gi|254780897|r 8 SEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPG---KVPLSHI 54 (473) Q Consensus 8 ~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~~ipGFRkG---KvP~~ii 54 (473) ..|.+.-+.+.....+|...+-+.++....++-|.|||=- ++|...+ T Consensus 90 ~~gi~vi~D~V~~np~V~~~l~~~~~~Wi~~~GvDGFRlD~a~~~~~~~~ 139 (292) T 3bh4_A 90 SRNVQVYGDVVLDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFSFL 139 (292) T ss_dssp HTTCEEEEEECCTCHHHHHHHHHHHHHHHHHHTCCEEEETTGGGSCHHHH T ss_pred HCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH T ss_conf 88999999978689899999999999887605986588710024999999 No 59 >>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable, halophilic, N domain, RAW starch binding, hydrolase; HET: G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii h 168} PDB: 3bcd_A* 3bcf_A (A:117-231,A:323-505) Probab=42.67 E-value=16 Score=14.32 Aligned_cols=39 Identities=15% Similarity=0.283 Sum_probs=24.6 Q ss_pred CCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 797699999854899999999999998750738985897 Q gi|254780897|r 9 EGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPG 47 (473) Q Consensus 9 ~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~~ipGFRkG 47 (473) .|++.-+.+...-.+|...+-..++....++-|.|||=- T Consensus 105 ~gi~vi~D~V~~np~V~~~i~~~~~~Wi~~~GVDGfR~D 143 (298) T 3bc9_A 105 NDIKVYFDAVLENEAVQNDVIDWGQWIINNIDFDGFRLD 143 (298) T ss_dssp TTCEEEEEECCTCHHHHHHHHHHHHHHHHTTCCCEEEET T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHH T ss_conf 799899998648888989997779998876076355454 No 60 >>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A* (A:256-392,A:430-632) Probab=40.34 E-value=17 Score=14.06 Aligned_cols=11 Identities=18% Similarity=0.111 Sum_probs=5.5 Q ss_pred HHHHHCCCCCC Q ss_conf 99987299542 Q gi|254780897|r 77 EILSKRDERAA 87 (473) Q Consensus 77 ~~i~~~~~~~~ 87 (473) .+++..+++.+ T Consensus 48 ~~~~~lG~~~i 58 (340) T 3faw_A 48 DYLQKLGVTHI 58 (340) T ss_dssp HHHHHHTCSEE T ss_pred HHHHHCCCCEE T ss_conf 89997699889 No 61 >>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} (A:1-91,A:153-349) Probab=37.44 E-value=19 Score=13.73 Aligned_cols=42 Identities=17% Similarity=0.317 Sum_probs=26.3 Q ss_pred CCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 797699999854899999999999998750738985897048 Q gi|254780897|r 9 EGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVP 50 (473) Q Consensus 9 ~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~~ipGFRkGKvP 50 (473) .|.+.-+.+.+.-.+|...+-+.++-...++-|+|||=--|+ T Consensus 81 ~gi~v~~D~v~~nP~V~~~l~d~l~~Wl~~~GVDGfRlDaa~ 122 (288) T 1ht6_A 81 KGVQAIADIVILNDRVQRELKEWLLWLKSDLGFDAWRLDFAR 122 (288) T ss_dssp TTCEEEEEECCTCHHHHHHHHHHHHHHHHHHCCCEEEETTGG T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECHH T ss_conf 889899864044137888999999999997188779992234 No 62 >>3cfu_A Uncharacterized lipoprotein YJHA; YJHA_bacsu, SR562, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Bacillus subtilis} (A:) Probab=35.47 E-value=20 Score=13.51 Aligned_cols=82 Identities=11% Similarity=0.028 Sum_probs=48.8 Q ss_pred CCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCC-C-----CHHHHCCC--CCCCCCCCCCCCC--CCC-CC--- Q ss_conf 322111134445666426534666544203651786656-3-----10342068--8788754332344--444-44--- Q gi|254780897|r 166 ESEIGDKVTVDYTVSVDNVILEDQSKKNVQFIVGSADLF-S-----ETTEILVG--LKTGDQKEIERFF--PED-HS--- 231 (473) Q Consensus 166 ~~~~gD~v~id~~~~~dg~~~~~~~~~~~~~~lg~~~~~-~-----~f~~~liG--~k~Gd~~~~~~~~--P~d-~~--- 231 (473) +.+-+.++.|++.....|..--.....+|.+.-+.+... + .....+.+ +.+|.+++..+.| |.+ .. T Consensus 42 ~~~g~~fv~v~vtv~N~g~~~~~~~~~~f~l~d~dg~~y~~~~~~~~~~~~~~~~~L~PG~~~~G~ivFeVPk~~~~~~~ 121 (159) T 3cfu_A 42 IKDDEERLIIEVTXENIGEDSISYNFIGFDLRDKNDQSVRPVFSIEEKGRILXGGTLVSGKKVTGVLSYVIPKGEQKHYT 121 (159) T ss_dssp BCCCSEEEEEEEEEEECSSSCEEEEGGGEEEECTTCCBCCCEECSTTTTTBCCEEEECTTCEEEEEEEEEESTTCGGGCE T ss_pred CCCCCEEEEEEEEEEECCCCCEEECCCEEEEEECCCCEECCCEEECCCCCEEEEEEECCCCEEEEEEEEEECCCCCCEEE T ss_conf 89999899999999978888678525418999279979523161036776052246479988899999995799973189 Q ss_pred ----CCCCCCCCEEEEEEHH Q ss_conf ----1000387304676101 Q gi|254780897|r 232 ----IKDLAGKKVRLNFSIK 247 (473) Q Consensus 232 ----~~~laGk~v~f~v~v~ 247 (473) ..-+.++.+.|.+++. T Consensus 122 L~y~~~~~~~~~~~~~l~~~ 141 (159) T 3cfu_A 122 LVYNPFLADTNSSNTEERVK 141 (159) T ss_dssp EEECHHHHBCCSTTSGGGGG T ss_pred EEEECCCCCCCCCHHHHHHH T ss_conf 99800005765411344466 No 63 >>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} (A:1-92,A:293-302) Probab=35.32 E-value=20 Score=13.49 Aligned_cols=16 Identities=13% Similarity=0.054 Sum_probs=5.9 Q ss_pred CCCCHHHHHHHHHHHH Q ss_conf 2365578999999887 Q gi|254780897|r 266 GFESESAMRGLCSQKI 281 (473) Q Consensus 266 ~~~t~~elk~~ik~~l 281 (473) |+++...+-+.+|+.. T Consensus 46 Gv~tt~~Ii~~lk~~~ 61 (102) T 3b9q_A 46 GPKITVRIVERLREDI 61 (102) T ss_dssp CHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHH T ss_conf 8799999999999887 No 64 >>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228} (A:1-74) Probab=35.15 E-value=20 Score=13.47 Aligned_cols=13 Identities=0% Similarity=0.164 Sum_probs=4.7 Q ss_pred HHHCCCCHHHHHH Q ss_conf 9863999899999 Q gi|254780897|r 388 LGRFPGHEKKMLD 400 (473) Q Consensus 388 ~~~~~~~~~~~~~ 400 (473) +...+.++..+.+ T Consensus 42 A~~~~vS~stv~R 54 (74) T 3iwf_A 42 ANQLETSSTSIIR 54 (74) T ss_dssp HHHHTSCHHHHHH T ss_pred HHHHCCCHHHHHH T ss_conf 9997999989999 No 65 >>3h36_A Polyribonucleotide nucleotidyltransferase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Streptococcus mutans} (A:) Probab=32.41 E-value=22 Score=13.15 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=38.2 Q ss_pred CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 24677767478875023655789999998878999977777669999999986400347999999997767899999 Q gi|254780897|r 251 SPLPVVVNNDLAVRLGFESESAMRGLCSQKIKQHSEFLVRQKVKRQILDYISNKYTFDVPESLVENEYNGILQKVRF 327 (473) Q Consensus 251 ~~~~pel~def~k~~~~~t~~elk~~ik~~l~~~~~~~~~~~~~~~i~~~L~~~~~~~lPe~lv~~e~~~~~~~~~~ 327 (473) +..+|+.++++...+.---.+.|++.+...-+.... ..-..+++.+++.|...+.-.-+......++...++.+.. T Consensus 3 e~~~~~~~~el~~~v~~~~~~~l~~A~~~~~K~eR~-~al~~i~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~k 78 (93) T 3h36_A 3 AVELLQVDADLQAEIVGKYNADLQKAVQIEEKKASE-IATEAVKEHVTAEYEERYAEHEEHDRIXRDVAEILEQXEH 78 (93) T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHHHCSSHHHHH-HHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH T ss_conf 623177999999999999999999998000469999-9999999999999886504431024569999999999999 No 66 >>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} (A:1-80) Probab=31.95 E-value=23 Score=13.09 Aligned_cols=40 Identities=0% Similarity=-0.023 Sum_probs=32.7 Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHH Q ss_conf 9999999999864387428999999999999863999899 Q gi|254780897|r 358 VLTGIVLGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKK 397 (473) Q Consensus 358 vk~~lil~~Ia~~e~I~vs~~Ei~~~i~~~~~~~~~~~~~ 397 (473) -.|...+....+..+..++++|+..-+..++..||..+.+ T Consensus 35 ~~W~~tV~~M~~~~Ga~is~~e~~~Iv~YLa~~yG~~~~e 74 (80) T 1jmx_A 35 EGWLMSIARMQVMHGLQISDDDRRTLVKYLADKQGLAPSE 74 (80) T ss_dssp HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHTCCCGGG T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHH T ss_conf 8899999999874288678789999999998605999222 No 67 >>2vcc_A Alpha-N-acetylglucosaminidase; GH89, naGlu, sanfilippo disease, hydrolase, mucopolysaccharidosis, family 89 glycoside hydrolase; 2.0A {Clostridium perfringens} PDB: 2vc9_A* 2vcb_A* 2vca_A (A:143-595) Probab=29.85 E-value=24 Score=12.84 Aligned_cols=30 Identities=17% Similarity=0.105 Sum_probs=17.9 Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 0034799999999776789999997534864 Q gi|254780897|r 305 YTFDVPESLVENEYNGILQKVRFEMSSANQK 335 (473) Q Consensus 305 ~~~~lPe~lv~~e~~~~~~~~~~~l~~~~~~ 335 (473) ..-+||.+.++++.... +++..++...||. T Consensus 208 wgGPLp~~w~~~q~~Lq-~kIl~RmrelGM~ 237 (453) T 2vcc_A 208 FGGPLPNDWFEQRAELG-RKMHDRMQSFGIN 237 (453) T ss_dssp TTCCCCTTHHHHHHHHH-HHHHHHHHHHTCE T ss_pred CCCCCCHHHHHHHHHHH-HHHHHHHHHCCCE T ss_conf 68999999999999999-9999999983990 No 68 >>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} (A:1-79) Probab=29.77 E-value=24 Score=12.83 Aligned_cols=40 Identities=5% Similarity=-0.072 Sum_probs=32.8 Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHH Q ss_conf 9999999999864387428999999999999863999899 Q gi|254780897|r 358 VLTGIVLGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKK 397 (473) Q Consensus 358 vk~~lil~~Ia~~e~I~vs~~Ei~~~i~~~~~~~~~~~~~ 397 (473) -.|...+.......+..++++|+..-+..++..||..+.+ T Consensus 34 ~~W~~tV~~M~~~~Ga~i~~~e~~~Iv~YLa~~yG~~~~e 73 (79) T 1pby_A 34 EGWDMTVTRMMRNHGVALEPEERAAIVRHLSDTRGLSLAE 73 (79) T ss_dssp HHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHSCCCSGG T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC T ss_conf 8899999999874288578789999999998605989411 No 69 >>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A (A:1-96,A:300-320) Probab=29.71 E-value=24 Score=12.82 Aligned_cols=15 Identities=7% Similarity=0.184 Sum_probs=6.5 Q ss_pred HHHHHHHHHHHHHHC Q ss_conf 999999999999863 Q gi|254780897|r 377 EEEMQSALYQQLGRF 391 (473) Q Consensus 377 ~~Ei~~~i~~~~~~~ 391 (473) +-+|++||...++.+ T Consensus 95 pL~~~~~~~~~~~~~ 109 (117) T 1zu4_A 95 KYDIDQYIVHLSSGF 109 (117) T ss_dssp -CCHHHHHHHHTGGG T ss_pred CCCHHHHHHHHHCCC T ss_conf 209899999984763 No 70 >>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} (A:) Probab=29.04 E-value=25 Score=12.74 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=17.4 Q ss_pred CCHHHHHHHHHHHHHHHHHC---CCCC-----CCCCCCCEEEEEEEE Q ss_conf 11157899999976431000---0234-----332211113444566 Q gi|254780897|r 141 VDEKEIDRQMAEIAKNNVAF---EVKE-----TESEIGDKVTVDYTV 179 (473) Q Consensus 141 vtd~~Id~~i~~l~~~~~~~---~~~~-----~~~~~gD~v~id~~~ 179 (473) +++++..+.+++..-.-..+ ...| -+++.||.|.|...+ T Consensus 15 ls~eE~~~lL~~y~i~~~qLPkI~~~DPv~r~~G~k~GdVvkI~R~S 61 (78) T 1hmj_A 15 VPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRVIRKS 61 (78) T ss_pred CCHHHHHHHHHHHCCCHHHCCEECCCCHHHHHHCCCCCEEEEEEECC T ss_conf 69999999999969998889924262987886477999089999728 No 71 >>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phosphoprotein, signal sequence, membrane, ribosome, cytoplasm; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A (A:241-490) Probab=28.16 E-value=24 Score=12.91 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=5.8 Q ss_pred CCCCCCCCCCCC Q ss_conf 738985897048 Q gi|254780897|r 39 ANIKGFRPGKVP 50 (473) Q Consensus 39 ~~ipGFRkGKvP 50 (473) ..|||+|+|... T Consensus 165 ~~IpG~Rp~~t~ 176 (250) T 2ww9_A 165 ITLMGRREQNVA 176 (250) T ss_dssp HTSSSCCCCCST T ss_pred CCCCCCCCCHHH T ss_conf 957798983379 No 72 >>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural genomics consortium, SGC; HET: SAM; 2.50A {Homo sapiens} (A:1-73) Probab=27.96 E-value=26 Score=12.60 Aligned_cols=58 Identities=10% Similarity=0.041 Sum_probs=30.9 Q ss_pred CCCCCCCCCCCCEEEEEEEEEECC-C-CCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCC Q ss_conf 002343322111134445666426-5-34666544203651786656310342068878875433 Q gi|254780897|r 160 FEVKETESEIGDKVTVDYTVSVDN-V-ILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEI 222 (473) Q Consensus 160 ~~~~~~~~~~gD~v~id~~~~~dg-~-~~~~~~~~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~ 222 (473) +..-+++.+.||.|.++..+.... . .+.-.....+.-..| .+ --+.|||+..|+.+.- T Consensus 3 ~~~~~~~i~eGD~Vll~~~~k~~~~~~~~~l~~g~~l~t~~G--~i---~h~diIGk~~G~~I~t 62 (73) T 2b25_A 3 STSRERPFQAGELILAETGEGETKFKKLFRLNNFGLLNSNWG--AV---PFGKIVGKFPGQILRS 62 (73) T ss_dssp -----CCCCTTCEEEEEC----CCCEEEEECCSSCBCC-------C---BHHHHTTCCTTEEEEC T ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCEEECCCE--EE---EHHHHCCCCCCCEEEE T ss_conf 877777888998899992788626887799558967965853--57---8899648999828995 No 73 >>2wwb_A Protein transport protein SEC61 subunit alpha isoform 1; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} (A:252-476) Probab=27.73 E-value=26 Score=12.57 Aligned_cols=17 Identities=12% Similarity=0.196 Sum_probs=10.5 Q ss_pred HCCCCCCCCCCCCCHHH Q ss_conf 50738985897048899 Q gi|254780897|r 37 SKANIKGFRPGKVPLSH 53 (473) Q Consensus 37 ~~~~ipGFRkGKvP~~i 53 (473) ....|||+|+|...+-+ T Consensus 146 ~g~~IpG~Rpg~t~~~L 162 (225) T 2wwb_A 146 QQMVMRGHRETSMVHEL 162 (225) T ss_dssp HCTTTCCCCTTTTTHHH T ss_pred CCCCCCCCCCCCHHHHH T ss_conf 69927898997249999 No 74 >>2f0c_A Phage TP901-1 ORF49 (BPP); beta-barrel, beta prism, 3 helix parallel bundle, virus/viral protein complex; 1.65A {Lactococcus phage tp901-1} (A:75-191) Probab=24.48 E-value=30 Score=12.14 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=37.6 Q ss_pred CCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 221111344456664265346665442036517866563103420688788754332344444 Q gi|254780897|r 167 SEIGDKVTVDYTVSVDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPED 229 (473) Q Consensus 167 ~~~gD~v~id~~~~~dg~~~~~~~~~~~~~~lg~~~~~~~f~~~liG~k~Gd~~~~~~~~P~d 229 (473) .++||.|.+.|-|++....-.+...-+..+ ...+.|.-...|+|+-+|-.-.|.+..+-| T Consensus 34 tKK~~~V~v~~~G~vt~~i~~~~~~~~~wv---~~~frP~~~qsLvGH~ag~~~SFHIDI~p~ 93 (117) T 2f0c_A 34 RKKGTTVEYSIGGEISSSILANSNLVNRSV---PNEFCPRNRCSLVGHMVGGWNAFHIDIPSS 93 (117) T ss_dssp EEETTEEEEEEEECCCSCBCTTEECCSCCC---CGGGCCSSCEEEEEEETTSSCEEEEEECTT T ss_pred EEECCEEEEEEEEEEEEEECCCCCEEEEEC---CCCCCCCEEEEEEEEECCCCCEEEEEECCC T ss_conf 993888999975588663025541143565---788686315789999727884479973899 No 75 >>1js9_A Coat protein, capsid protein; plant virus, bromoviruses, BMV, icosahedral virus; 3.40A {Brome mosaic virus} (A:) Probab=23.70 E-value=31 Score=12.03 Aligned_cols=48 Identities=13% Similarity=0.263 Sum_probs=36.5 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCCCCHHH Q ss_conf 0342068878875433234444444100038730467610110024677767478 Q gi|254780897|r 207 TTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKVRLNFSIKEVFSPLPVVVNNDL 261 (473) Q Consensus 207 f~~~liG~k~Gd~~~~~~~~P~d~~~~~laGk~v~f~v~v~~I~~~~~pel~def 261 (473) ..+++.|...||-..+.+-+ |....++.+.+..+..| +.+.|.+||-| T Consensus 137 Y~d~Fkgitle~l~~L~IYl---Ys~~a~aa~~ivvhlEV----EHv~P~fd~~F 184 (189) T 1js9_A 137 YTDAFRGATLGDLLNLQIYL---YASEAVPAKAVVVHLEV----EHVRPTFDDFF 184 (189) T ss_dssp ETTTSSSCBTTTTTSCCEEE---ECSSCBCTTSBCCEEEE----EEECCSGGGSC T ss_pred HHHHHCCCCHHHHCCEEEEE---EEHHHCCCCCEEEEEEE----EECCCCHHHCC T ss_conf 57764576777832608999---73110256756999998----62243201014 No 76 >>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* (C:) Probab=23.42 E-value=20 Score=13.56 Aligned_cols=35 Identities=9% Similarity=-0.028 Sum_probs=17.7 Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH Q ss_conf 99999999999986438742899999999999986 Q gi|254780897|r 356 RRVLTGIVLGTIGEKNNIEVTEEEMQSALYQQLGR 390 (473) Q Consensus 356 k~vk~~lil~~Ia~~e~I~vs~~Ei~~~i~~~~~~ 390 (473) ..+.+..|+.+|.+...--++.+|+++.|..++.. T Consensus 471 ~~~~~~~~~~~i~~s~~~~~~~~e~~~~l~~l~~~ 505 (546) T 2wvr_C 471 PALSMEVACARMVGSCCTIMSPGEMEKHLLLLSEL 505 (546) T ss_dssp ----------------------------------- T ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 75079999999998545769999999999999986 No 77 >>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A (A:57-117,A:165-172) Probab=23.09 E-value=31 Score=11.95 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=16.1 Q ss_pred EEEEEEEEC-------CCCCCCCCCCCCCCCCCC Q ss_conf 057887622-------787762111356431001 Q gi|254780897|r 112 LKLRLSYDI-------LPQIEISSFDDLQVTQDI 138 (473) Q Consensus 112 ~~~~~~~ev-------~Pei~l~~y~~i~i~~~~ 138 (473) ++|.+.|++ .|+|.||.++|-+.+.+. T Consensus 27 YeF~~eFdIPvtYP~t~pEi~lPeLdGKTaKMYR 60 (69) T 2z6o_A 27 YEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYR 60 (69) T ss_dssp EEEEEEEECCTTTTTSCCCCBCGGGTTTCSSBCT T ss_pred EEEEEEECCCCCCCCCCCCEECCCCCCCHHHHHC T ss_conf 8888873167778999843124556883165405 No 78 >>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; 2.25A {Pyrococcus horikoshii OT3} PDB: 2how_A (A:128-356) Probab=22.17 E-value=33 Score=11.82 Aligned_cols=10 Identities=0% Similarity=0.089 Sum_probs=3.3 Q ss_pred HHHHHHHHCC Q ss_conf 9999998729 Q gi|254780897|r 74 IVPEILSKRD 83 (473) Q Consensus 74 ~~~~~i~~~~ 83 (473) .+..++.... T Consensus 43 ~~~~~~~~~~ 52 (229) T 1wn1_A 43 KIELLIRELS 52 (229) T ss_dssp HHHHHHHHHS T ss_pred CCCCCCCCCC T ss_conf 2222222222 No 79 >>1yc6_A Coat protein; structural transition, proteolysis, BMV, ALMV, symmetry, assembly, icosahedral virus; 2.90A {Brome mosaic virus} (A:) Probab=21.82 E-value=33 Score=11.76 Aligned_cols=48 Identities=13% Similarity=0.263 Sum_probs=35.8 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCCCCHHH Q ss_conf 0342068878875433234444444100038730467610110024677767478 Q gi|254780897|r 207 TTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKVRLNFSIKEVFSPLPVVVNNDL 261 (473) Q Consensus 207 f~~~liG~k~Gd~~~~~~~~P~d~~~~~laGk~v~f~v~v~~I~~~~~pel~def 261 (473) ..+++.|..-|+-..+.+-+ |....++.+.+..+..| +.+.|.+||-| T Consensus 102 Y~e~FKgitle~l~~L~IYl---YS~~al~a~~vvVhlEV----EHv~P~fd~~F 149 (154) T 1yc6_A 102 YTDAFRGATLGDLLNLQIYL---YASEAVPAKAVVVHLEV----EHVRPTFDDFF 149 (154) T ss_dssp ESSTTTTCBTTGGGGEEEEE---EESSCBCTTSEEEEEEE----EEECCCCCCBC T ss_pred HHHHHCCCCHHHHCCEEEEE---EEHHHCCCCCEEEEEEE----EECCCCCCCCC T ss_conf 07654675777832608999---73110356756999998----73143311235 No 80 >>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 2.07A {Thermus thermophilus HB8} (A:335-416) Probab=21.43 E-value=34 Score=11.71 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=28.7 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCC-CCCCCCCCCEEEEE Q ss_conf 01211115789999997643100002-34332211113444 Q gi|254780897|r 137 DICEVDEKEIDRQMAEIAKNNVAFEV-KETESEIGDKVTVD 176 (473) Q Consensus 137 ~~~~vtd~~Id~~i~~l~~~~~~~~~-~~~~~~~gD~v~id 176 (473) ....++..+-=..+.+++++.+-... .+.+++.||.|.|- T Consensus 32 ~~~~~~~~es~~~f~~~L~~~Gv~~~L~~~G~k~GDtV~Ig 72 (82) T 1udx_A 32 ARIKGDLMEAAGYLQEVFRRQGVEAALRAKGVRAGDLVRIG 72 (82) T ss_dssp TTEEECTGGGHHHHHHHHHHTTHHHHHHTTTCCTTCEEEET T ss_pred HHCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEC T ss_conf 75669878999999999998780699996599999999999 No 81 >>3cvz_A S-layer protein; surface layer protein, protein binding, structural protein; 2.40A {Clostridium difficile} (A:1-93,A:237-273) Probab=20.33 E-value=35 Score=11.54 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=53.6 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEECCCC-----------CCCC Q ss_conf 12111157899999976431000023433221111344456664265346665442036517866-----------5631 Q gi|254780897|r 138 ICEVDEKEIDRQMAEIAKNNVAFEVKETESEIGDKVTVDYTVSVDNVILEDQSKKNVQFIVGSAD-----------LFSE 206 (473) Q Consensus 138 ~~~vtd~~Id~~i~~l~~~~~~~~~~~~~~~~gD~v~id~~~~~dg~~~~~~~~~~~~~~lg~~~-----------~~~~ 206 (473) .+.|...+..+++++|+.- +..|-.-. +..+.||.++. ++.++++. +..- T Consensus 7 gYTVVQkdYKKalKqLQ~G----------IkdgsIT~--I~V~FDG~~Vs-------tv~~~s~~t~adke~AA~~L~nl 67 (130) T 3cvz_A 7 GYTVVKNDWKKAVKQLQDG----------LKDNSIGK--ITVSFNDGVVG-------EVAPKSANKKADRDAAAEKLYNL 67 (130) T ss_dssp EEEEEGGGHHHHHHHHHHH----------HHTTCEEE--EEEEETTEEEE-------EECCSSTTCHHHHHHHHHHHHHH T ss_pred CEEEEHHHHHHHHHHHHHH----------HHCCCEEE--EEEEECCCEEE-------EEEECCCCCCCCHHHHHHHHHHH T ss_conf 6688737889999999865----------20381368--99998894767-------88733675521068899999887 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHC Q ss_conf 034206887887543323444444410003873046761011002 Q gi|254780897|r 207 TTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKVRLNFSIKEVFS 251 (473) Q Consensus 207 f~~~liG~k~Gd~~~~~~~~P~d~~~~~laGk~v~f~v~v~~I~~ 251 (473) .+.+|-|+--|+.++|+++++.. ...-.|+-+..|.|...++ T Consensus 68 Vd~KLDnLGDGdyVdF~ItY~~~---~~~~~~~~~~~~~~~~~~~ 109 (130) T 3cvz_A 68 VNTQLDKLGDGDYVDFSVDYNLE---NKILAKSGTINVRVINAKE 109 (130) T ss_dssp HHHHHHTCCTTCEEEEEEEEEGG---GCCSCSEEEEEEEEECC-- T ss_pred HHHHHCCCCCCCEEEEEEEECCC---CCECCCCCCEEEEEEEEEE T ss_conf 76541367899859999986675---5247888725899994314 No 82 >>1dzf_A DNA-directed RNA polymerases I, II, and III 27 KD polypeptide; RNA polymerase subunit; 1.9A {Saccharomyces cerevisiae} (A:145-215) Probab=20.15 E-value=35 Score=11.51 Aligned_cols=14 Identities=7% Similarity=0.109 Sum_probs=7.3 Q ss_pred CCHHHHHHHHHHHH Q ss_conf 11157899999976 Q gi|254780897|r 141 VDEKEIDRQMAEIA 154 (473) Q Consensus 141 vtd~~Id~~i~~l~ 154 (473) +++++.++.+++.. T Consensus 12 l~~eE~~~lL~~y~ 25 (71) T 1dzf_A 12 LSSDEKRELLKRYR 25 (71) T ss_dssp CCHHHHHHHHHHTT T ss_pred CCHHHHHHHHHHCC T ss_conf 59999999999829 Done!