HHSEARCH alignment of GI: 254780897 and SCOP domain: d1m5ya1

Alignment
>d1m5ya1 a.223.1.2 (A:25-164,A:395-427) Porin chaperone SurA, peptide-binding domain {Escherichia coli [TaxId: 562]}
Probab=97.33  E-value=0.0062  Score=38.52  Aligned_cols=88  Identities=11%  Similarity=0.213  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHH
Q ss_conf             789999999999999999986438742899999999999986399989999998709----9989999999999999999
Q gi|254780897|r  349 YYHMLAKRRVLTGIVLGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKKMLDHFQKY----PNALAELRAPIFEDKVIDH  424 (473)
Q Consensus       349 ~~~~~Aek~vk~~lil~~Ia~~e~I~vs~~Ei~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~ile~Kv~d~  424 (473)
                      .++.++-.++-..-++...|+..+|.|++++|+..+...+.+++.+...+...+..+    ..++..++..++-++++..
T Consensus        41 ~l~~~vl~~LI~~~Ll~q~a~~~~i~vs~~ev~~~i~~~~~~~~~~~~~f~~~L~~~g~~~~~~~~~ir~~l~~~~l~~~  120 (173)
T d1m5ya1          41 TLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNN  120 (173)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             79999999999999999999870445899999999999998858989999999987399899999999999999999999


Q ss_pred             -HHHHCEEEEEEE
Q ss_conf             -988535665531
Q gi|254780897|r  425 -ILKSVQIVDRKV  436 (473)
Q Consensus       425 -l~~~a~i~ek~~  436 (473)
                       +...+.|++.++
T Consensus       121 ~v~~~i~Vt~~Ei  133 (173)
T d1m5ya1         121 EVRRRITILPQEV  133 (173)
T ss_dssp             HHHHTCCCCTTHH
T ss_pred             HHCCCCCCCHHHH
T ss_conf             8316898699999


SCOP domain information

class: All alpha proteins
fold: Triger factor/SurA peptide-binding domain-like
superfamily: Triger factor/SurA peptide-binding domain-like
family: Porin chaperone SurA, peptide-binding domain
domain: Porin chaperone SurA, peptide-binding domain
species: Escherichia coli [TaxId: 562]