HHSEARCH alignment of GI: 254780897 and SCOP domain: d1t11a1

Alignment
>d1t11a1 a.223.1.1 (A:248-376) Trigger factor, C-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=99.69  E-value=3.4e-17  Score=152.81  Aligned_cols=127  Identities=17%  Similarity=0.362  Sum_probs=115.8

Q ss_pred             CCHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             6747887502--36557899999988789999777776699999999864003479999999977678999999753486
Q gi|254780897|r  257 VNNDLAVRLG--FESESAMRGLCSQKIKQHSEFLVRQKVKRQILDYISNKYTFDVPESLVENEYNGILQKVRFEMSSANQ  334 (473)
Q Consensus       257 l~def~k~~~--~~t~~elk~~ik~~l~~~~~~~~~~~~~~~i~~~L~~~~~~~lPe~lv~~e~~~~~~~~~~~l~~~~~  334 (473)
                      |||+||+++|  ++|+++||+.|+++|..++.......+++++++.|++.++|++|++||+++++++++++..++..++.
T Consensus         1 LdDefak~~g~~~~tleelk~~ik~~l~~~~~~~~~~~~~~~i~~~L~~~~~~elPe~lv~~e~~~~~~~~~~~~~~~~~   80 (129)
T d1t11a1           1 LNDEFVARFGVAEGGVDALKAEVRKNMERELKQAIKARIKEQAIEGLVKENEIQVPSALIDQEINVLRQQAAQRFGGNVE   80 (129)
T ss_dssp             CSTGGGGGGSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTBCSCCCEEECHHHHHHHHHHHHHHHHHHSSCSHH
T ss_pred             CCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             98899987488679899999999999999999999999999999999986777797999999999999999988500410


Q ss_pred             CCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf             4001100013456778999999999999999998643874289999999999998
Q gi|254780897|r  335 KSQNVDSIDEEDLQYYHMLAKRRVLTGIVLGTIGEKNNIEVTEEEMQSALYQQLG  389 (473)
Q Consensus       335 ~~~~~~~~~e~~~~~~~~~Aek~vk~~lil~~Ia~~e~I~vs~~Ei~~~i~~~~~  389 (473)
                      .      ..+.+++.++..|+++||++||+.+||+.++|+||++||..++.++|+
T Consensus        81 ~------~~~~~~~~~~~~Ae~~vK~~lil~~Ia~~e~i~vs~eei~~~i~~~As  129 (129)
T d1t11a1          81 A------AAQLPRELFEEQAKRRVVVGLLLGEVIRTHELKADEEKVKALITEMAT  129 (129)
T ss_dssp             H------HTTSCGGGTHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
T ss_conf             0------048889999999999999999999999998899899999999997729


SCOP domain information

class: All alpha proteins
fold: Triger factor/SurA peptide-binding domain-like
superfamily: Triger factor/SurA peptide-binding domain-like
family: TF C-terminus
domain: Trigger factor, C-terminal domain
species: Vibrio cholerae [TaxId: 666]