HHSEARCH alignment of GI: 254780897 and SCOP domain: d1w26a1

Alignment
>d1w26a1 a.223.1.1 (A:248-432) Trigger factor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.96  E-value=6.2e-27  Score=230.90  Aligned_cols=182  Identities=19%  Similarity=0.423  Sum_probs=170.2

Q ss_pred             CCHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             674788750236--557899999988789999777776699999999864003479999999977678999999753486
Q gi|254780897|r  257 VNNDLAVRLGFE--SESAMRGLCSQKIKQHSEFLVRQKVKRQILDYISNKYTFDVPESLVENEYNGILQKVRFEMSSANQ  334 (473)
Q Consensus       257 l~def~k~~~~~--t~~elk~~ik~~l~~~~~~~~~~~~~~~i~~~L~~~~~~~lPe~lv~~e~~~~~~~~~~~l~~~~~  334 (473)
                      |||+||+.+|++  |+++||+.|+++|..++...+...++++++++|++.++|++|++||+++++++++++..++..++.
T Consensus         1 L~dEFak~~g~e~~tleelk~~ik~~l~~~~~~~~~~~~~~~i~~~L~~~~~~elP~slv~~e~~~~~~~~~~~~~~~~~   80 (185)
T d1w26a1           1 LTAEFIKRFGVEDGSVEGLRAEVRKNMERELKSAIRNRVKSQAIEGLVKANDIDVPAALIDSEIDVLRRQAAQRFGGNEK   80 (185)
T ss_dssp             CSHHHHTTTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHTTTTCCTT
T ss_pred             CCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             98899987388779999999999999999999999999999999999975786797899999999999998774001220


Q ss_pred             CCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHH
Q ss_conf             40011000134567789999999999999999986438742899999999999986399989999998709998999999
Q gi|254780897|r  335 KSQNVDSIDEEDLQYYHMLAKRRVLTGIVLGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKKMLDHFQKYPNALAELRA  414 (473)
Q Consensus       335 ~~~~~~~~~e~~~~~~~~~Aek~vk~~lil~~Ia~~e~I~vs~~Ei~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  414 (473)
                      .      ..+.++..+++.|+++||++||+++||+.++|+||++||..++.+++.+|+ .+.+.+++|+++++++..+++
T Consensus        81 ~------~~e~~~~~~~~~A~~~vk~~lil~~Ia~~e~i~vt~eei~~~i~~~a~~~~-~~~~~~~~~~~~~~~~~~i~~  153 (185)
T d1w26a1          81 Q------ALELPRELFEEQAKRRVVVGLLLGEVIRTNELKADEERVKGLIEEMASAYE-DPKEVIEFYSKNKELMDNMRN  153 (185)
T ss_dssp             S------STTSCGGGTHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTSS-CHHHHHHHHHHCHHHHHHHHH
T ss_pred             H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHCHHHHHHHHH
T ss_conf             0------024458999999999999999999999873687899999999987652159-889999999829999999999


Q ss_pred             HHHHHHHHHHHHHHCEEEEEEECHHHHCCCC
Q ss_conf             9999999999988535665531488840676
Q gi|254780897|r  415 PIFEDKVIDHILKSVQIVDRKVTFDQLFDNS  445 (473)
Q Consensus       415 ~ile~Kv~d~l~~~a~i~ek~~~~~el~~~~  445 (473)
                      .++++||++||+++|+++++++|++||++..
T Consensus       154 ~i~~~Kv~~~l~~~akv~ek~~s~~El~~~~  184 (185)
T d1w26a1         154 VALEEQAVEAVLAKAKVTEKETTFNELMNQQ  184 (185)
T ss_dssp             HHHHHHHHHHHHTTSBCCEEECCHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHCEEEEEECCHHHHHCCC
T ss_conf             9999999999998683000105599972678


SCOP domain information

class: All alpha proteins
fold: Triger factor/SurA peptide-binding domain-like
superfamily: Triger factor/SurA peptide-binding domain-like
family: TF C-terminus
domain: Trigger factor, C-terminal domain
species: Escherichia coli [TaxId: 562]