RPSBLAST alignment of GI: 254780897 and protein with PDBid: 1t11
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A Length = 392
Score = 175 bits (444), Expect = 2e-44
Identities = 82/405 (20%), Positives = 193/405 (47%), Gaps = 18/405 (4%)
Query: 1 MQVIEKFSEGLKRELDVIIPSNRLTDSFNERIEDIRSKANIKGFRPGKVPLSHIKSLYGK 60
MQV + EGL+R L++ +P+ + D+ + +I GFR GKVP+ + +YGK
Sbjct: 4 MQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMYGK 63
Query: 61 SILSETIDEIIKEIVPEILSKRDERAAMRPSITINEGESDITSGLIEGTVDLKLRLSYDI 120
++ + + E+++ E + K A P+ E DL ++++
Sbjct: 64 AVRQDVLGEVMQRHFIEAIVKEKINPAGAPTFAPVEIGEGK---------DLVFTATFEV 114
Query: 121 LPQIEISSFDDLQVTQDICEVDEKEIDRQMAEIAKNNVAFEVKETESEIGDKVTVDYTVS 180
P++E+ +++ V + EV + ++ + + K ++ + +E G +V++D+ S
Sbjct: 115 YPEVELKGLENIAVEKPAAEVTDADVAEMLETLRKQQATWKEVDEAAENGKRVSIDFVGS 174
Query: 181 VDNVILEDQSKKNVQFIVGSADLFSETTEILVGLKTGDQKEIERFFPEDHSIKDLAGKKV 240
+D V E +N +G+ + + +VG G + I+ FPED+ ++L GK
Sbjct: 175 IDGVEFEGGKAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENLKGKAA 234
Query: 241 RLNFSIKEVFSPLPVVVNNDLAVRLGFE--SESAMRGLCSQKIKQHSEFLVRQKVKRQIL 298
+ + +V + +N++ R G A++ + +++ + ++ ++K Q +
Sbjct: 235 KFAIKVNKVEARELPELNDEFVARFGVAEGGVDALKAEVRKNMERELKQAIKARIKEQAI 294
Query: 299 DYISNKYTFDVPESLVENEYNGILQKVRFEMSSANQKSQNVDSIDEEDLQYYHMLAKRRV 358
+ + + VP +L++ E N + Q+ A + NV++ + + + AKRRV
Sbjct: 295 EGLVKENEIQVPSALIDQEINVLRQQA------AQRFGGNVEAAAQLPRELFEEQAKRRV 348
Query: 359 LTGIVLGTIGEKNNIEVTEEEMQSALYQQLGRFPGHEKKMLDHFQ 403
+ G++LG + + ++ EE++++ + + + +++ +++
Sbjct: 349 VVGLLLGEVIRTHELKADEEKVKALITEMATAYED-PSEVVSYYE 392