HHsearch results for GI: 254780898 and protein with PDBid: 2jjd_A
>2jjd_A Receptor-type tyrosine-protein phosphatase epsilon; transmembrane, phosphoprotein, alternative splicing, consortium, structural, glycoprotein, SGC; 3.20A {Homo sapiens}
Probab=98.33 E-value=2e-06 Score=59.40 Aligned_cols=120 Identities=18% Similarity=0.188 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHCCCCEEEECCCCCCC------CCCHHHHH-------------------------------HHHH----C
Q ss_conf 98999999997499389973787876------54445799-------------------------------9996----6
Q gi|254780898|r 59 NGTFIEYLKKEYGIKSILNLRGKLPE------SWHKEEEK-------------------------------AAND----L 97 (207)
Q Consensus 59 ~~~~~~~l~k~~GIktIInLr~~~~~------~~~~~e~~-------------------------------~~~~----~ 97 (207)
+-++|..++-+.++++||.|....+. .++..+.. .... .
T Consensus 401 Tv~dFW~Mv~e~~v~~IVmL~~~~e~~~~kc~~YwP~~~~~~~g~~~V~~~~~~~~~~~~~r~~~vt~~~~~~~~~~~~r 480 (599)
T 2jjd_A 401 TVEDFWRMIWEWKSHTIVMLTEVQEREQDKCYQYWPTEGSVTHGEITIEIKNDTLSEAISIRDFLVTLNQPQARQGEQVR 480 (599)
T ss_dssp THHHHHHHHHHTTCCEEEECSCSEETTEECCCCCSCSSSEEEETTEEEEEEEEEECSSEEEEEEEEEEC------CTTEE
T ss_pred CHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCEEEEEEEEEECCCEEEEEEEEEEEEECCCCCCCCE
T ss_conf 38899999985599899993256525543455565678975877399999999954978998888876442037898427
Q ss_pred CCEEEEE-ECCCCCCC-CHHHHHHHHHHHH-----CCCCCEEEECCCCCCHHHHHHHHHHHHH----CC-CCHHHHHHHH
Q ss_conf 9849987-52688898-9899999999994-----2799499982899888999999999998----39-9989999961
Q gi|254780898|r 98 GIQLINF-PLSATREL-NDEQIKQLISILK-----TAPKPLLIHCKSGADRTGLASAVYLYIV----AH-YPKEEAHRQL 165 (207)
Q Consensus 98 gi~~i~i-p~~~~~~~-~~~~i~~~~~il~-----~~~~PVlVHC~aG~~RTG~~~alyli~~----~g-~~~~eA~~el 165 (207)
-|.|+++ .+++.+.| +...+..++..+. ..++||+|||.+|.||||+++|+.-+.. .+ .+..++.+.|
T Consensus 481 ~V~h~~y~~Wpd~~vP~~~~~~l~li~~v~~~~~~~~~~PIvVHCsaGvGRtG~f~ald~~i~~l~~~~~vdV~~~v~~l 560 (599)
T 2jjd_A 481 VVRQFHFHGWPEIGIPAEGKGMIDLIAAVQKQQQQTGNHPITVHCSAGAGRTGTFIALSNILERVKAEGLLDVFQAVKSL 560 (599)
T ss_dssp EEEEEEECCSCSSSCCSCCHHHHHHHHHHHHHHHHSTTCCEEEECSSSSSHHHHHHHHHHHHHHHHHHSEECHHHHHHHH
T ss_pred EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99997579899889899978999999999998850798999999698956999999999999998536987799999999
Q ss_pred HH-CCCCCCCCCHH
Q ss_conf 00-02642674245
Q gi|254780898|r 166 SM-LYGHFPVLKTI 178 (207)
Q Consensus 166 ~~-~ygh~~~~~~~ 178 (207)
+- |.+-+.-..+|
T Consensus 561 R~qR~~~Vqt~~QY 574 (599)
T 2jjd_A 561 RLQRPHMVQTLEQY 574 (599)
T ss_dssp HTTSTTSSCSHHHH
T ss_pred HHHCCCCCCCHHHH
T ss_conf 86383403999999