HHsearch results for GI: 254780898 and protein with PDBid: 2jjd_A
>2jjd_A Receptor-type tyrosine-protein phosphatase epsilon; transmembrane, phosphoprotein, alternative splicing, consortium, structural, glycoprotein, SGC; 3.20A {Homo sapiens}
Probab=98.17 E-value=5.3e-06 Score=56.76 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHCCCCEEEECCCCCCC------CCCHHHH-----------------------------HH---H-HHCCC
Q ss_conf 98999999997499389973787876------5444579-----------------------------99---9-96698
Q gi|254780898|r 59 NGTFIEYLKKEYGIKSILNLRGKLPE------SWHKEEE-----------------------------KA---A-NDLGI 99 (207)
Q Consensus 59 ~~~~~~~l~k~~GIktIInLr~~~~~------~~~~~e~-----------------------------~~---~-~~~gi 99 (207)
+-.+|..++-+.+++.||-|....|. .++..+. .. . +..-+
T Consensus 109 T~~dFW~MV~~~~~~~IVMLt~~~E~~~~kc~~Ywp~~~~~~~g~~~V~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~v 188 (599)
T 2jjd_A 109 TVNDFWRMVWEQKSATIVMLTNLKERKEEKCHQYWPDQGCWTYGNIRVCVEDCVVLVDYTIRKFCIQPQLPDGCKAPRLV 188 (599)
T ss_dssp GHHHHHHHHHHTTCCEEEECSCSEETTEECSCCCSCSSSEEEETTEEEEEEEEEECSSEEEEEEEEBC------CCCEEE
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCEEECCCCCCCCCCEEECCEEEEEEEEEEECCEEEEEEEEEEEECCCCCCEEEE
T ss_conf 69999999975389899987775629846067679999974775699999999994683799999999743799861899
Q ss_pred EEEEEE-CCCCCCC-CHHHHHHHHHHHHC----CCCCEEEECCCCCCHHHHHHHHHHHHH-----CCCCHHHHHHHHHH-
Q ss_conf 499875-2688898-98999999999942----799499982899888999999999998-----39998999996100-
Q gi|254780898|r 100 QLINFP-LSATREL-NDEQIKQLISILKT----APKPLLIHCKSGADRTGLASAVYLYIV-----AHYPKEEAHRQLSM- 167 (207)
Q Consensus 100 ~~i~ip-~~~~~~~-~~~~i~~~~~il~~----~~~PVlVHC~aG~~RTG~~~alyli~~-----~g~~~~eA~~el~~- 167 (207)
.|+++. +++.+.| +...+..++..+.. ..+|++|||.+|.||||+++|+-.+.. ...+..+....|.-
T Consensus 189 ~h~~~~~Wpd~~vP~~~~~~l~~i~~v~~~~~~~~~PivVHCsaGvGRtgtfia~d~~~~~l~~~~~v~v~~~v~~lR~q 268 (599)
T 2jjd_A 189 SQLHFTSWPDFGVPFTPIGMLKFLKKVKTLNPVHAGPIVVHCSAGVGRTGTFIVIDAMMAMMHAEQKVDVFEFVSRIRNQ 268 (599)
T ss_dssp EEEEECCCCSSSCCSCSHHHHHHHHHHHHHSCTTCCCEEEECSSSSSHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTT
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99987888978963999999999999996578889998999369976524888058689999706987999999999874
Q ss_pred CCCCCCCCCHHH
Q ss_conf 026426742459
Q gi|254780898|r 168 LYGHFPVLKTIT 179 (207)
Q Consensus 168 ~ygh~~~~~~~~ 179 (207)
|++-+.-..+|.
T Consensus 269 R~~~vqt~~QY~ 280 (599)
T 2jjd_A 269 RPQMVQTDMQYT 280 (599)
T ss_dssp STTCSCCHHHHH
T ss_pred HCCCCCCHHHHH
T ss_conf 204578889999