RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780898|ref|YP_003065311.1| hypothetical protein
CLIBASIA_03975 [Candidatus Liberibacter asiaticus str. psy62]
         (207 letters)



>gnl|CDD|32512 COG2365, COG2365, Protein tyrosine/serine phosphatase [Signal
           transduction mechanisms].
          Length = 249

 Score = 72.4 bits (177), Expect = 8e-14
 Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 5/128 (3%)

Query: 43  NFHAVVPHEIYRSAQPNGT-FIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQL 101
           NF  ++P   YRS QP        L     +K+I+NLR +   +     +   N     +
Sbjct: 46  NFLGIIPIIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAI 105

Query: 102 IN---FPLSATRELNDEQIKQLISILKTAPK-PLLIHCKSGADRTGLASAVYLYIVAHYP 157
           I    +    TRE   E++ +L+ +L  A   P+LIHC +G DRTGL +A+Y  +V    
Sbjct: 106 IMFESYRSFPTREDAAERLVELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSD 165

Query: 158 KEEAHRQL 165
           +  A   L
Sbjct: 166 ETVAADYL 173


>gnl|CDD|36785 KOG1572, KOG1572, KOG1572, Predicted protein tyrosine phosphatase
           [Defense mechanisms].
          Length = 249

 Score = 49.2 bits (117), Expect = 8e-07
 Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 14/111 (12%)

Query: 43  NFHAVVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLI 102
           NF  V    +YRS  P      +LK    +KSI++L    PE + +E        GI+L 
Sbjct: 59  NFSMVDN-GLYRSGFPRPENFSFLK-TLHLKSIISLC---PEPYPEENLNFLESNGIKLY 113

Query: 103 NFPLSATRELNDEQ---------IKQLISILKTAPKPLLIHCKSGADRTGL 144
              +   ++   E           K L  +L     P+LIHCK G  RTG 
Sbjct: 114 QIGIEGEKDNKKEPFVNIPDHSIRKALKVLLDKRNYPILIHCKRGKHRTGC 164


>gnl|CDD|111998 pfam03162, Y_phosphatase2, Tyrosine phosphatase family.  This
           family is closely related to the pfam00102 and pfam00782
           families.
          Length = 150

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 16/110 (14%)

Query: 43  NFHAVVPHEIYRSAQP---NGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGI 99
           NF  V    +YRS+ P   N +F+  L+    +K+I++L    PE + ++  +      I
Sbjct: 6   NFSPVES-GLYRSSYPRANNFSFLRSLR----LKTIISLS---PEPYPQDNLQFLESEHI 57

Query: 100 QLINFPLSATRE-----LNDEQIKQLISILKTAPKPLLIHCKSGADRTGL 144
           +L +  +   ++      +    + L  +L     P+LIHC  G  RTGL
Sbjct: 58  KLYHIHMEGNKDPFVNIPSHLLRRALKLLLNKDNYPVLIHCNRGKHRTGL 107


>gnl|CDD|36932 KOG1720, KOG1720, KOG1720, Protein tyrosine phosphatase CDC14
           [Defense mechanisms].
          Length = 225

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 59  NGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPLSATRELNDEQIK 118
              +I+Y K    + SI+ L  +L ++          D GI   +   +      D  +K
Sbjct: 83  PQPYIQYFKNNN-VTSIVRLNKRLYDAKRFT------DAGIDHHDLFFADGSTPTDAIVK 135

Query: 119 QLISILKTAPKP--LLIHCKSGADRTGLASAVYL 150
           + + I++ A K   + +HCK+G  RTG   A YL
Sbjct: 136 EFVKIVENAEKGGKIAVHCKAGLGRTGTLIACYL 169


>gnl|CDD|33256 COG3453, COG3453, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 130

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 51  EIYRSAQPNGTFIEYLKKEYGIKSILNLR--GKLPESWHKEEEK-AANDLGIQLINFPLS 107
            +  S Q +   I  +    G KSI+  R  G+ P          AA   G+   + P++
Sbjct: 9   RLSVSGQISPADIASIAAL-GFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVT 67

Query: 108 ATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGL 144
               + +  ++     L  A  P+L +C+SG     L
Sbjct: 68  G-GGITEADVEAFQRALDEAEGPVLAYCRSGTRSLNL 103


>gnl|CDD|144397 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain.
           Ser/Thr and Tyr protein phosphatases. The enzyme's
           tertiary fold is highly similar to that of
           tyrosine-specific phosphatases, except for a
           "recognition" region.
          Length = 131

 Score = 35.3 bits (82), Expect = 0.011
 Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 6/108 (5%)

Query: 66  LKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPLSA-TRELNDEQIKQLISIL 124
             ++ GI  ++N+  ++P S           LGI + +   +  ++ L   +  + I   
Sbjct: 13  FLEKLGITHVINVTREVPNSNLNSGI---LYLGIPVEDNHETNISKYLP--EAVEFIDDA 67

Query: 125 KTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQLSMLYGHF 172
                 +L+HC++G  R+      YL    +    EA+  +       
Sbjct: 68  IQKGGKVLVHCQAGISRSATLIIAYLMKTRNLSLNEAYSFVKERRPII 115


>gnl|CDD|113060 pfam04273, DUF442, Putative phosphatase (DUF442).  Although this
           domain is uncharacterized it seems likely that it
           performs a phosphatase function.
          Length = 110

 Score = 34.4 bits (79), Expect = 0.025
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 68  KEYGIKSILNLR--GKLPES-WHKEEEKAANDLGIQLINFPLSATRELNDEQIKQLISIL 124
              G +S++N R  G+ P    +  E+ AA   G+     P+ +  ++ +  ++     L
Sbjct: 24  ARAGFRSVINNRPDGEEPGQPSNAAEQAAARAAGLAYRFIPVISG-QITEADVEAFQRAL 82

Query: 125 KTAPKPLLIHCKSGA 139
             A  P+L HC+SG 
Sbjct: 83  AAAEGPVLAHCRSGT 97


>gnl|CDD|36928 KOG1716, KOG1716, KOG1716, Dual specificity phosphatase [Defense
           mechanisms].
          Length = 285

 Score = 33.7 bits (76), Expect = 0.036
 Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 5/121 (4%)

Query: 48  VPHEIYRSAQPNGTFIEYLKKEYGIKSILNL-RGKLPESWHKEEEKAANDLGIQLINFPL 106
           +   +Y  +Q   +  + L K+ GI  +LN+        + KE+      L I + + P 
Sbjct: 78  ILPNLYLGSQGVASDPD-LLKKLGITHVLNVSSSCPNPRFLKEQGI--KYLRIPVEDNPS 134

Query: 107 SATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQLS 166
           +   +   E I   I   +     +L+HC++G  R+      YL        E+A+  + 
Sbjct: 135 TDILQHFPEAIS-FIEKAREKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVK 193

Query: 167 M 167
            
Sbjct: 194 S 194


>gnl|CDD|32569 COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal
           transduction mechanisms].
          Length = 180

 Score = 33.5 bits (76), Expect = 0.039
 Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 7/103 (6%)

Query: 62  FIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPLSATRELNDEQIKQLI 121
            I+ +        I  L           EE      GIQ+++ P+      + E + +++
Sbjct: 40  GIQTILSLINALVIEELELLGALYNVAIEEND----GIQVLHLPILDGTVPDLEDLDKIV 95

Query: 122 SILKTA---PKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEA 161
             ++ A    K +++HC+ G  R+G   A YL +       + 
Sbjct: 96  DFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADE 138


>gnl|CDD|29029 cd00127, DSPc, Dual specificity phosphatases (DSP); Ser/Thr and Tyr
           protein phosphatases. Structurally similar to
           tyrosine-specific phosphatases but with a shallower
           active site cleft and a distinctive active site
           signature motif, HCxxGxxR. Characterized as VHR- or
           Cdc25-like..
          Length = 139

 Score = 30.6 bits (69), Expect = 0.32
 Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 12/121 (9%)

Query: 47  VVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPL 106
            +   +Y  + P  +  E LKK  GI  +LN+         +   +         +  P+
Sbjct: 4   EITPGLYLGSYPAASDKELLKK-LGITHVLNV-------AKEVPNENLFLSDFNYLYVPI 55

Query: 107 SATRELND----EQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAH 162
                 +     ++    I   +     +L+HC +G  R+      YL         EA+
Sbjct: 56  LDLPSQDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAY 115

Query: 163 R 163
            
Sbjct: 116 E 116


>gnl|CDD|37165 KOG1954, KOG1954, KOG1954, Endocytosis/signaling protein EHD1
           [Signal transduction mechanisms, Intracellular
           trafficking, secretion, and vesicular transport].
          Length = 532

 Score = 30.3 bits (68), Expect = 0.38
 Identities = 20/98 (20%), Positives = 43/98 (43%), Gaps = 9/98 (9%)

Query: 108 ATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQLSM 167
           A R L + + + L   L+T P+   +   +   +    + V+ YI++   KE     +  
Sbjct: 266 ANRRLFEAEEQDLFRDLQTLPRKAALRKLNDLIKRARLAKVHAYIISCLKKE-----MPS 320

Query: 168 LYGHFPVLKTITMDI--TFEKITQLYPNNVSKGDTEQP 203
           ++G     K +  ++   +EK+ + +  N+S GD    
Sbjct: 321 VFGKEKKKKRLIDNLIDIYEKLQREH--NISPGDFPDV 356


>gnl|CDD|36929 KOG1717, KOG1717, KOG1717, Dual specificity phosphatase [Defense
           mechanisms].
          Length = 343

 Score = 29.0 bits (64), Expect = 0.97
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 11/87 (12%)

Query: 68  KEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPLSATRELN-DEQIKQLISILKT 126
           K+YGIK ++N+   LP ++    E             P+S     N  +   + IS +  
Sbjct: 194 KKYGIKYVINVTPNLPNNFENNGE-------FIYKQIPISDHASQNLSQFFPEAISFIDE 246

Query: 127 APKP---LLIHCKSGADRTGLASAVYL 150
           A      +L+HC +G  R+   +  YL
Sbjct: 247 ARSKNCGVLVHCLAGISRSVTVTVAYL 273


>gnl|CDD|145399 pfam02219, MTHFR, Methylenetetrahydrofolate reductase.  This family
           includes the 5,10-methylenetetrahydrofolate reductase
           EC:1.7.99.5 from bacteria and methylenetetrahydrofolate
           reductase EC: 1.5.1.20 from eukaryotes. The structure
           for this domain is known to be a TIM barrel.
          Length = 286

 Score = 28.8 bits (65), Expect = 0.99
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 6/41 (14%)

Query: 68  KEYGIKSILNLRGKLP---ESWHKEEE--KAANDLGIQLIN 103
           K  GI++IL LRG  P   + W K E   K A DL ++LI 
Sbjct: 94  KALGIRNILALRGDPPKGGDHWEKPEGGFKYALDL-VRLIR 133


>gnl|CDD|34925 COG5350, COG5350, Predicted protein tyrosine phosphatase [General
           function prediction only].
          Length = 172

 Score = 28.8 bits (64), Expect = 1.0
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 97  LGIQLINFPLSATRELNDEQIKQLISILKTAP--KPLLIHCKSGADRTGLASAVYLYIVA 154
           L    I  P        +  ++ +I      P   PLLIHC +G  R+   +A  +  +A
Sbjct: 60  LHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCYAGISRS--TAAALIAALA 117

Query: 155 HYPKEEAHR 163
             P  +   
Sbjct: 118 LAPDMDETE 126


>gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase
           component [Inorganic ion transport and metabolism].
          Length = 253

 Score = 27.8 bits (62), Expect = 2.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 163 RQLSMLYGHFPVLKTITMDITFEKITQL 190
           R L++ YG    LK I +DI   K+T L
Sbjct: 11  RDLNLYYGDKHALKDINLDIPKNKVTAL 38


>gnl|CDD|39429 KOG4228, KOG4228, KOG4228, Protein tyrosine phosphatase [Signal
           transduction mechanisms].
          Length = 1087

 Score = 27.3 bits (60), Expect = 2.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 130 PLLIHCKSGADRTGL 144
           P+++HC +G  RTG 
Sbjct: 732 PIVVHCSAGVGRTGC 746


>gnl|CDD|144247 pfam00581, Rhodanese, Rhodanese-like domain.  Rhodanese has an
           internal duplication. This Pfam represents a single copy
           of this duplicated domain. The domain is found as a
           single copy in other proteins, including phosphatases
           and ubiquitin C-terminal hydrolases.
          Length = 106

 Score = 27.5 bits (61), Expect = 3.0
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 102 INFPLSATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLY 151
           +N PL        E   + +       K ++++C+SG +R+G A+A+ L 
Sbjct: 34  VNIPLPLPSLDKLESELEELGKKLDKDKTIVVYCESG-NRSGQAAALLLA 82


>gnl|CDD|28929 cd00047, PTPc, Protein tyrosine phosphatases (PTP) catalyze the
           dephosphorylation of phosphotyrosine peptides; they
           regulate phosphotyrosine levels in signal transduction
           pathways. The depth of the active site cleft renders the
           enzyme specific for phosphorylated Tyr (pTyr) residues,
           instead of pSer or pThr. This family has a distinctive
           active site signature motif, HCSAGxGRxG. Characterized
           as either transmembrane, receptor-like or
           non-transmembrane (soluble) PTPs. Receptor-like PTP
           domains tend to occur in two copies in the cytoplasmic
           region of the transmembrane proteins, only one copy may
           be active..
          Length = 231

 Score = 27.1 bits (60), Expect = 3.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 128 PKPLLIHCKSGADRTG 143
             P+++HC +G  RTG
Sbjct: 166 SGPIVVHCSAGVGRTG 181


>gnl|CDD|30058 cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and Allantoinase
           (ALN); L-Hydantoinases are a member of the
           dihydropyrimidinase family, which catalyzes the
           reversible hydrolytic ring opening of dihydropyrimidines
           and hydantoins (five-membered cyclic diamides used in
           biotechnology). But L-HYDs differ by having an L-enantio
           specificity and by lacking activity on possible natural
           substrates such as dihydropyrimidines. Allantoinase
           catalyzes the hydrolytic cleavage of the five-member
           ring of allantoin (5-ureidohydantoin) to form allantoic
           acid..
          Length = 447

 Score = 26.8 bits (59), Expect = 4.2
 Identities = 6/28 (21%), Positives = 15/28 (53%)

Query: 110 RELNDEQIKQLISILKTAPKPLLIHCKS 137
             ++DEQ+++ +  L      L +H ++
Sbjct: 157 PAVDDEQLEEAMKELAKTGSVLAVHAEN 184


>gnl|CDD|107328 cd06333, PBP1_ABC-type_HAAT_like, Type I periplasmic binding
           component of ABC (ATPase Binding Cassette)-type
           transport systems that are predicted to be involved in
           uptake of amino acids.  This subgroup includes the type
           I periplasmic binding component of ABC (ATPase Binding
           Cassette)-type transport systems that are predicted to
           be involved in uptake of amino acids. Members of this
           subgroup are sequence-similar to members of the family
           of ABC-type hydrophobic amino acid transporters (HAAT),
           such as leucine-isoleucine-valine-binding protein
           (LIVBP); their ligand specificity has not been
           determined experimentally, however.
          Length = 312

 Score = 26.8 bits (60), Expect = 4.3
 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 7/57 (12%)

Query: 52  IYRSAQPN----GTFIEYLKKEYGIKSI--LNLRGKLPESWHKEEEKAANDLGIQLI 102
           ++++ Q +       +  +KK  G+K++  +       ES  KE +  A   GI+++
Sbjct: 110 VFKTPQNDRLMAEAILADMKKR-GVKTVAFIGFSDAYGESGLKELKALAPKYGIEVV 165


>gnl|CDD|30817 COG0469, PykF, Pyruvate kinase [Carbohydrate transport and
           metabolism].
          Length = 477

 Score = 26.7 bits (59), Expect = 4.7
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 152 IVAHYPKEEAHRQLSMLYGHFPVLKTITMDITFEKITQLYPNNVSKG 198
           I+A  P E   R+L++++G +P+L       T E + +     +  G
Sbjct: 401 IIALTPNERVARRLALVWGVYPLLVEEKPTSTDEMVEEAVEKLLESG 447


>gnl|CDD|36011 KOG0792, KOG0792, KOG0792, Protein tyrosine phosphatase PTPMEG,
            contains FERM domain [Signal transduction mechanisms].
          Length = 1144

 Score = 26.6 bits (58), Expect = 5.5
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 130  PLLIHCKSGADRTG--LASAVYLYIVAH 155
            P+L+HC +G  RTG  +     L ++ H
Sbjct: 1065 PILVHCSAGIGRTGVLILMETALCLLEH 1092


>gnl|CDD|37494 KOG2283, KOG2283, KOG2283, Clathrin coat dissociation kinase
           GAK/PTEN/Auxilin and related tyrosine phosphatases
           [Signal transduction mechanisms, General function
           prediction only].
          Length = 434

 Score = 26.6 bits (58), Expect = 5.7
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 133 IHCKSGADRTGLASAVYLYIVAHYPK-EEAHRQLSMLYGHFPVLKTIT 179
           +HCK+G  RTG+    YL         EEA    +         K +T
Sbjct: 112 VHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVT 159


>gnl|CDD|143879 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase. 
          Length = 234

 Score = 26.5 bits (59), Expect = 5.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 125 KTAPKPLLIHCKSGADRTG 143
                P+++HC +G  RTG
Sbjct: 166 PPRSGPIVVHCSAGVGRTG 184


>gnl|CDD|119440 cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the
           asymmetrical cyclization of tetrapyrrole (linear) to
           uroporphyrinogen-III, the fourth step in the
           biosynthesis of heme. This ubiquitous enzyme is present
           in eukaryotes, bacteria and archaea. Mutations in the
           human uroporphyrinogen-III synthase gene cause
           congenital erythropoietic porphyria, a recessive inborn
           error of metabolism also known as Gunther disease.
          Length = 239

 Score = 26.5 bits (59), Expect = 6.0
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 75  ILNLRGKLPESWHKEEEKAANDLGIQLINFPLSATRELNDEQIKQLISILKTA 127
           +L  R   P     E       LG +++  PL     L+D ++   ++ L   
Sbjct: 1   VLVTR---PRPQADELAALLEALGAEVLELPLIEIEPLDDAELDAALADLDEY 50


>gnl|CDD|144675 pfam01168, Ala_racemase_N, Alanine racemase, N-terminal domain. 
          Length = 216

 Score = 26.0 bits (58), Expect = 6.7
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 4/61 (6%)

Query: 115 EQIKQLISILKTAPKPLLIHCK--SGADRTGLASAVYLYIVAHYPKEEAHRQLSMLYGHF 172
           EQ + L +      +PL +H K  +G  R G        +           +L  L  HF
Sbjct: 97  EQAEALSAAAAKLGRPLRVHLKVDTGMGRLGFTPEELPALAEA--LALPGLRLEGLMTHF 154

Query: 173 P 173
            
Sbjct: 155 A 155


>gnl|CDD|28903 cd00019, AP2Ec, AP endonuclease family 2; These endonucleases play
           a role in DNA repair. Cleave phosphodiester bonds at
           apurinic or apyrimidinic sites; the alignment also
           contains hexulose-6-phosphate isomerases, enzymes that
           catalyze the epimerization of D-arabino-6-hexulose
           3-phosphate to D-fructose 6-phosphate, via cleaving the
           phosphoesterbond with the sugar. .
          Length = 279

 Score = 26.1 bits (57), Expect = 7.8
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 75  ILNLRGKLPESWHK------EEEKAANDLGIQLINF-PLSATRELNDEQIKQLISILKTA 127
           ++NL     E   K      +E +   +LGI+L+ F P S   +  +E +K++I  L   
Sbjct: 69  LINLASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNEL 128

Query: 128 PKPLLIH 134
                  
Sbjct: 129 IDKAETK 135


>gnl|CDD|37597 KOG2386, KOG2386, KOG2386, mRNA capping enzyme, guanylyltransferase
           (alpha) subunit [RNA processing and modification].
          Length = 393

 Score = 26.1 bits (57), Expect = 8.0
 Identities = 15/69 (21%), Positives = 27/69 (39%)

Query: 104 FPLSATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHR 163
            P +   +   + +K  +   K   + + +HC  G +RTG     YL  V  Y   EA +
Sbjct: 100 VPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIK 159

Query: 164 QLSMLYGHF 172
           + +      
Sbjct: 160 RFADARPPG 168


>gnl|CDD|145647 pfam02608, Bmp, Basic membrane protein.  This is a family of basic
           membrane lipoproteins form Borrelia and various putative
           lipoproteins form other bacteria. All of these proteins
           are outer membrane proteins and are thus antigenic in
           nature when possessed by the pathogenic members of the
           family. One protein, Bacillus subtilis med, is a
           transcriptional activator.
          Length = 302

 Score = 25.8 bits (57), Expect = 8.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 63  IEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLI 102
           I   KKE+ I+ I     +L +  ++   K   D G  LI
Sbjct: 25  IRRFKKEFNIELIYKESSELQDEDYEALLKLLKDQGYDLI 64


>gnl|CDD|35784 KOG0564, KOG0564, KOG0564, 5,10-methylenetetrahydrofolate reductase
           [Amino acid transport and metabolism].
          Length = 590

 Score = 25.7 bits (56), Expect = 9.2
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%)

Query: 68  KEYGIKSILNLRGKLP---ESWHKEE 90
           K  GI++IL LRG  P   + W +EE
Sbjct: 102 KALGIRNILALRGDPPIGQDKWVEEE 127


>gnl|CDD|36931 KOG1719, KOG1719, KOG1719, Dual specificity phosphatase [Defense
           mechanisms].
          Length = 183

 Score = 25.7 bits (56), Expect = 9.4
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 123 ILKTAP--KPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQL 165
           I K A   K + +HCK+G  R+    A YL    ++  E A   +
Sbjct: 102 IHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHV 146


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.321    0.138    0.399 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,452,628
Number of extensions: 123651
Number of successful extensions: 488
Number of sequences better than 10.0: 1
Number of HSP's gapped: 484
Number of HSP's successfully gapped: 44
Length of query: 207
Length of database: 6,263,737
Length adjustment: 89
Effective length of query: 118
Effective length of database: 4,340,536
Effective search space: 512183248
Effective search space used: 512183248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.2 bits)