RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780898|ref|YP_003065311.1| hypothetical protein CLIBASIA_03975 [Candidatus Liberibacter asiaticus str. psy62] (207 letters) >d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 151 Score = 71.3 bits (174), Expect = 5e-14 Identities = 36/147 (24%), Positives = 54/147 (36%), Gaps = 15/147 (10%) Query: 43 NFHAVVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLI 102 NF V I+RS P+ +L+ G++SI+ L PE + + + GI+L Sbjct: 7 NFSMVDNG-IFRSGFPDSANFSFLQT-LGLRSIIYLC---PEPYPESNLQFLKSNGIRLF 61 Query: 103 NFPLSATRELNDEQIKQLIS-----ILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYP 157 F + +E I +L P+LIHCK G RTG + + Sbjct: 62 QFGIEGNKEPFVNIPDHKIRMALKVLLDEKNHPVLIHCKRGKHRTGCLVGCLRKL-QKWC 120 Query: 158 KEEAHRQLSMLYGHFPVLKTITMDITF 184 + Y F K D F Sbjct: 121 LTSIFDE----YQRFAAAKARVSDQRF 143 >d2pt0a1 c.45.1.4 (A:34-346) Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA {Selenomonas ruminantium [TaxId: 971]} Length = 313 Score = 51.2 bits (122), Expect = 7e-08 Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 14/131 (10%) Query: 69 EYGIKSILNLR-GKLPESWHKE-------EEKAANDLGIQLINFPLSATRELNDEQIKQL 120 + I L KLPE E++ A G++ + E I + Sbjct: 143 LHKTVYIAPLGKHKLPEGGEVRRVQKVQTEQEVAEAAGMRYFRIAATDHVWPTPENIDRF 202 Query: 121 ISILKTAPK--PLLIHCKSGADRTGLASAVYLYIVAHY---PKEEAHRQLSMLYGHFPVL 175 ++ +T P+ L HC++G RT + ++ + K+ +RQ + ++ Sbjct: 203 LAFYRTLPQDAWLHFHCEAGVGRTTAFMVMTD-MLKNPSVSLKDILYRQHEIGGFYYGEF 261 Query: 176 KTITMDITFEK 186 T D K Sbjct: 262 PIKTKDKDSWK 272 >d1vhra_ c.45.1.1 (A:) VH1-related dual-specificity phosphatase, VHR {Human (Homo sapiens) [TaxId: 9606]} Length = 178 Score = 48.2 bits (114), Expect = 5e-07 Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 7/130 (5%) Query: 41 TQNFHAVVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQ 100 +Q + V P IY I L+K GI +LN D GI Sbjct: 20 SQPCNEVTPR-IYVGNASVAQDIPKLQK-LGITHVLNAAEGRSFMHVNTNANFYKDSGIT 77 Query: 101 LINFPLSATRELN-----DEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAH 155 + + T+E N + + L +L+HC+ G R+ YL + Sbjct: 78 YLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGYSRSPTLVIAYLMMRQK 137 Query: 156 YPKEEAHRQL 165 + A + Sbjct: 138 MDVKSALSIV 147 >d1ohea2 c.45.1.1 (A:199-380) Proline directed phosphatase CDC14b2 {Human (Homo sapiens) [TaxId: 9606]} Length = 182 Score = 47.0 bits (111), Expect = 1e-06 Identities = 23/137 (16%), Positives = 49/137 (35%), Gaps = 21/137 (15%) Query: 43 NFHAVVPHEIYRSAQPNGT--------------FIEYLKKEYGIKSILNLRGKLPESWHK 88 + + ++P P+ +I+Y K + + +I+ L ++ ++ Sbjct: 17 DLNWIIPDRFIAFCGPHSRARLESGYHQHSPETYIQYFKN-HNVTTIIRLNKRMYDA--- 72 Query: 89 EEEKAANDLGIQLINFPLSATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAV 148 K D G + + D +K+ + I + A + +H K+G RTG A Sbjct: 73 ---KRFTDAGFDHHDLFFADGSTPTDAIVKEFLDICENAEGAIAVHSKAGLGRTGTLIAC 129 Query: 149 YLYIVAHYPKEEAHRQL 165 Y+ E + Sbjct: 130 YIMKHYRMTAAETIAWV 146 >d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 272 Score = 40.2 bits (93), Expect = 1e-04 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 1/109 (0%) Query: 45 HAVVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINF 104 + H + + + E K +L G ES + + Sbjct: 68 DGIDVHLLPFPDLADDDADDSAPHETAFKRLLTNDGSNGESGESSQSINDAATRYMTDEY 127 Query: 105 PLSATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIV 153 TR + +++++L A +P+L HC +G DRTG A+ L V Sbjct: 128 RQFPTRNGAQRALHRVVTLLA-AGRPVLTHCFAGKDRTGFVVALVLEAV 175 >d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human (Homo sapiens) [TaxId: 9606]} Length = 176 Score = 37.3 bits (86), Expect = 9e-04 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 5/88 (5%) Query: 68 KEYGIKSILNL--RGKLPESWHKEEEKAANDLGIQLINFPLSATRELNDEQIKQLISILK 125 K GI+ I RG+L + GI + P++ + +++ L Sbjct: 44 KSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCCEIMEELT 103 Query: 126 TA---PKPLLIHCKSGADRTGLASAVYL 150 T + LIH G R+ L +A L Sbjct: 104 TCLKNYRKTLIHSYGGLGRSCLVAACLL 131 >d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1 [TaxId: 9606]} Length = 145 Score = 36.2 bits (83), Expect = 0.002 Identities = 19/119 (15%), Positives = 47/119 (39%), Gaps = 7/119 (5%) Query: 47 VVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPL 106 ++P+ ++ + + + ++ L+ GI ++LN+ P + E I + + Sbjct: 7 ILPY-LFLGSCSHSSDLQGLQA-CGITAVLNVSASCPNHF----EGLFRYKSIPVEDNQ- 59 Query: 107 SATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQL 165 ++ I +K + +L+H ++G R+ YL +EA + Sbjct: 60 MVEISAWFQEAIGFIDWVKNSGGRVLVHSQAGISRSATICLAYLMQSRRVRLDEAFDFV 118 >d1i9sa_ c.45.1.1 (A:) mRNA capping enzyme, triphosphatase domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 194 Score = 33.1 bits (75), Expect = 0.017 Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 19/114 (16%) Query: 63 IEYLK-KEYGIKSILNL----RGKLPESWHKEEEKAANDLGIQLINFPL-----SATREL 112 YLK + + +++L R KE GI+ I T E Sbjct: 47 SNYLKSLKVKMSLLVDLTNTSRFYDRNDIEKE--------GIKYIKLQCKGHGECPTTEN 98 Query: 113 NDEQIKQLISILKTAP-KPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQL 165 + I+ + +P + + +HC G +RTG +L + E A Sbjct: 99 TETFIRLCERFNERSPPELIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATF 152 Score = 24.7 bits (53), Expect = 6.2 Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%) Query: 56 AQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEE 91 G +++ L + YG LP+ W E+E Sbjct: 159 GIYKGDYLKELFRRYGDIEEAPPPPVLPD-WCFEDE 193 >d1mkpa_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pyst1 (mkp3) [TaxId: 9606]} Length = 144 Score = 32.1 bits (72), Expect = 0.038 Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 5/119 (4%) Query: 47 VVPHEIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPL 106 ++P +Y + T ++ L++ +GIK ILN+ LP + E + I Sbjct: 7 ILPF-LYLGCAKDSTNLDVLEE-FGIKYILNVTPNLPNLFENAGEFKYKQIPIS---DHW 61 Query: 107 SATRELNDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQL 165 S + I + +L+H +G R+ + YL + +A+ + Sbjct: 62 SQNLSQFFPEAISFIDEARGKNCGVLVHSLAGISRSVTVTVAYLMQKLNLSMNDAYDIV 120 >d1rxda_ c.45.1.1 (A:) Protein tyrosine phosphatase type IVa {Human (Homo sapiens), pr-1 [TaxId: 9606]} Length = 152 Score = 31.2 bits (70), Expect = 0.069 Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 13/111 (11%) Query: 62 FIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPLSATRELNDEQIKQLI 121 FIE LKK YG+ +I+ + ++ E+E GI ++++P +++ + + Sbjct: 25 FIEELKK-YGVTTIVRVCEATYDTTLVEKE------GIHVLDWPFDDGAPPSNQIVDDWL 77 Query: 122 SILKT-----APKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQLSM 167 S++K + +HC +G R + A+ L I E+A + + Sbjct: 78 SLVKIKFREEPGCCIAVHCVAGLGRAPVLVALAL-IEGGMKYEDAVQFIRQ 127 >d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Length = 160 Score = 31.0 bits (69), Expect = 0.083 Identities = 11/77 (14%), Positives = 21/77 (27%), Gaps = 12/77 (15%) Query: 109 TRELNDEQIKQLISILKTAPKPLLI------------HCKSGADRTGLASAVYLYIVAHY 156 + LND+ + L+ L +A P ++ C A+R V Sbjct: 1 SVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCP 60 Query: 157 PKEEAHRQLSMLYGHFP 173 ++ Sbjct: 61 FPTRHPCFRGLMPAGIA 77 >d1l5ja1 a.118.15.1 (A:1-160) Aconitase B, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 160 Score = 28.2 bits (63), Expect = 0.57 Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 15/78 (19%) Query: 112 LNDEQIKQLISILKTAPKP-------LLIHC-KSGADRTGLASAVYL-------YIVAHY 156 L+ Q+ L+ +LK P LL + G D A +L Sbjct: 22 LDANQMAALVELLKNPPAGEEEFLLDLLTNRVPPGVDEAAYVKAGFLAAIAKGEAKSPLL 81 Query: 157 PKEEAHRQLSMLYGHFPV 174 E+A L + G + + Sbjct: 82 TPEKAIELLGTMQGGYNI 99 >d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Length = 179 Score = 27.6 bits (60), Expect = 0.83 Identities = 8/58 (13%), Positives = 21/58 (36%), Gaps = 1/58 (1%) Query: 114 DEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQLSMLYGH 171 D+ I Q+ ++ A P+ + A + + A+ + + + Q + Sbjct: 7 DDAIDQVAKLIAQAKNPIFL-LGLMASQPENSKALRRLLETSHIPVTSTYQAAGAVNQ 63 >d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 177 Score = 27.3 bits (59), Expect = 1.2 Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 1/59 (1%) Query: 113 NDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQLSMLYGH 171 + Q ++L A P+L+ + A R+G A+ + Sbjct: 5 WQKAADQAAALLAEAKHPVLV-VGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPV 62 >d1d5ra2 c.45.1.1 (A:14-187) Phoshphoinositide phosphatase Pten (Pten tumor suppressor), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 174 Score = 26.9 bits (59), Expect = 1.2 Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 6/81 (7%) Query: 94 ANDLGIQLINFPLSATRELNDEQIKQLISILKTAPK-----PLLIHCKSGADRTGLASAV 148 ++ +P E IK L IHCK+G RTG+ Sbjct: 65 TAKFNCRVAQYPFEDHNPPQLELIKPFCEDLDQWLSEDDNHVAAIHCKAGKGRTGVMICA 124 Query: 149 YLYIVAHYPK-EEAHRQLSML 168 YL + K +EA + Sbjct: 125 YLLHRGKFLKAQEALDFYGEV 145 >d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 179 Score = 26.9 bits (58), Expect = 1.3 Identities = 5/21 (23%), Positives = 13/21 (61%) Query: 113 NDEQIKQLISILKTAPKPLLI 133 D ++Q++ ++ + KP+L Sbjct: 5 EDSHLEQIVRLISESKKPVLY 25 >d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Length = 193 Score = 26.0 bits (56), Expect = 2.2 Identities = 8/24 (33%), Positives = 12/24 (50%) Query: 98 GIQLINFPLSATRELNDEQIKQLI 121 GI++ N P +LN E I + Sbjct: 168 GIEVFNVPKKNLNKLNWENINEFC 191 >d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Length = 183 Score = 25.8 bits (55), Expect = 2.9 Identities = 6/23 (26%), Positives = 12/23 (52%) Query: 111 ELNDEQIKQLISILKTAPKPLLI 133 E + + + +L L A +PL+ Sbjct: 14 EPDVQAVTRLTQTLLAAERPLIY 36 >d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Length = 175 Score = 25.7 bits (55), Expect = 3.3 Identities = 4/21 (19%), Positives = 13/21 (61%) Query: 113 NDEQIKQLISILKTAPKPLLI 133 ++ I + ++K A +P+++ Sbjct: 5 AEDAIARAADLIKNAKRPVIM 25 >d1lyva_ c.45.1.2 (A:) Protein-tyrosine phosphatase YopH, catalytic domain {Yersinia enterocolitica [TaxId: 630]} Length = 283 Score = 25.5 bits (55), Expect = 3.7 Identities = 7/38 (18%), Positives = 14/38 (36%) Query: 113 NDEQIKQLISILKTAPKPLLIHCKSGADRTGLASAVYL 150 N + K ++ + +IH ++G RT Sbjct: 196 NMYESKGSSAVADDSKLRPVIHSRAGVGRTAQLIGAMC 233 >d1jr2a_ c.113.1.1 (A:) Uroporphyrinogen III synthase (U3S, HemD) {Human (Homo sapiens) [TaxId: 9606]} Length = 260 Score = 25.3 bits (54), Expect = 4.2 Identities = 7/55 (12%), Positives = 19/55 (34%) Query: 72 IKSILNLRGKLPESWHKEEEKAANDLGIQLINFPLSATRELNDEQIKQLISILKT 126 +K +L K + + G++ P+ + L+ + +S + Sbjct: 1 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPED 55 >d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Length = 177 Score = 25.0 bits (53), Expect = 4.4 Identities = 3/21 (14%), Positives = 10/21 (47%) Query: 113 NDEQIKQLISILKTAPKPLLI 133 + I + +L + +P++ Sbjct: 7 AAQDIDAAVELLNNSKRPVIY 27 >d3e11a1 d.92.1.17 (A:1-113) Uncharacterized protein Acel_2062 {Acidothermus cellulolyticus [TaxId: 28049]} Length = 113 Score = 25.0 bits (55), Expect = 4.4 Identities = 3/28 (10%), Positives = 12/28 (42%) Query: 129 KPLLIHCKSGADRTGLASAVYLYIVAHY 156 + C++ ++ ++ +AH+ Sbjct: 73 NTICALCETESEVIDEVRKTVVHEIAHH 100 >d2j9ua1 a.24.28.1 (A:148-241) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 94 Score = 25.1 bits (55), Expect = 4.4 Identities = 8/22 (36%), Positives = 13/22 (59%) Query: 106 LSATRELNDEQIKQLISILKTA 127 LS L + QI++L+ L+ A Sbjct: 65 LSIGDTLTETQIRELLFDLELA 86 >d1e29a_ a.3.1.1 (A:) Photosystem II associated cytochrome c549 {Synechocystis sp., pcc 6803 [TaxId: 1143]} Length = 135 Score = 24.8 bits (53), Expect = 6.2 Identities = 6/44 (13%), Positives = 12/44 (27%) Query: 86 WHKEEEKAANDLGIQLINFPLSATRELNDEQIKQLISILKTAPK 129 + E+ + R ++ I + APK Sbjct: 81 SYDGEDDYSELHPNISRPDIYPEMRNYTEDDIFDVAGYTLIAPK 124 >d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]} Length = 324 Score = 24.3 bits (52), Expect = 7.5 Identities = 4/52 (7%), Positives = 23/52 (44%) Query: 1 MIKIKKPRKNLLIFYIKILLGVLVLCAVSLGLYFLTITTFTQNFHAVVPHEI 52 + + ++ + + + +L+ + +L ++ G +++ + + +I Sbjct: 4 LARQQQRQNIRWLLCLSVLMLLALLLSLCAGEQWISPGDWFTPRGELFVWQI 55 >d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 158 Score = 24.2 bits (52), Expect = 7.6 Identities = 8/20 (40%), Positives = 14/20 (70%) Query: 114 DEQIKQLISILKTAPKPLLI 133 E+ K + +++K A +PLLI Sbjct: 6 LEKGKPVANMIKKAKRPLLI 25 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.321 0.138 0.399 Gapped Lambda K H 0.267 0.0708 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 750,251 Number of extensions: 33060 Number of successful extensions: 153 Number of sequences better than 10.0: 1 Number of HSP's gapped: 150 Number of HSP's successfully gapped: 31 Length of query: 207 Length of database: 2,407,596 Length adjustment: 81 Effective length of query: 126 Effective length of database: 1,295,466 Effective search space: 163228716 Effective search space used: 163228716 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (23.5 bits)