BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780898|ref|YP_003065311.1| hypothetical protein
CLIBASIA_03975 [Candidatus Liberibacter asiaticus str. psy62]
         (207 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780898|ref|YP_003065311.1| hypothetical protein CLIBASIA_03975 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 207

 Score =  426 bits (1094), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/207 (100%), Positives = 207/207 (100%)

Query: 1   MIKIKKPRKNLLIFYIKILLGVLVLCAVSLGLYFLTITTFTQNFHAVVPHEIYRSAQPNG 60
           MIKIKKPRKNLLIFYIKILLGVLVLCAVSLGLYFLTITTFTQNFHAVVPHEIYRSAQPNG
Sbjct: 1   MIKIKKPRKNLLIFYIKILLGVLVLCAVSLGLYFLTITTFTQNFHAVVPHEIYRSAQPNG 60

Query: 61  TFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPLSATRELNDEQIKQL 120
           TFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPLSATRELNDEQIKQL
Sbjct: 61  TFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPLSATRELNDEQIKQL 120

Query: 121 ISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQLSMLYGHFPVLKTITM 180
           ISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQLSMLYGHFPVLKTITM
Sbjct: 121 ISILKTAPKPLLIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQLSMLYGHFPVLKTITM 180

Query: 181 DITFEKITQLYPNNVSKGDTEQPMNAT 207
           DITFEKITQLYPNNVSKGDTEQPMNAT
Sbjct: 181 DITFEKITQLYPNNVSKGDTEQPMNAT 207


>gi|254781080|ref|YP_003065493.1| hypothetical protein CLIBASIA_04910 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 85

 Score = 25.8 bits (55), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 15/65 (23%)

Query: 51  EIYRSAQPNGTFIEYLKKEYGIKSILNLRGKLPESWHKEEEKAANDLGIQLINFPLSATR 110
           +IY  A+  G  ++       IK IL+LR K  + W +EE         Q+++  L A  
Sbjct: 36  DIYGEAKATGFDVK------AIKKILSLRKKDEKQWMEEE---------QILDVYLRALG 80

Query: 111 ELNDE 115
            L DE
Sbjct: 81  MLKDE 85


>gi|254780215|ref|YP_003064628.1| hypothetical protein CLIBASIA_00500 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 262

 Score = 24.6 bits (52), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 109 TRELNDEQIKQLISILKTAPKPLLIHCKSGADRTG-----LASAVYLYIVAHYPKEEAHR 163
           +R  +D+    L   +K  P P +IHC S + +       L   +    +  +PK +A R
Sbjct: 130 SRSADDDMAAILQEEMKKGPFPFVIHCFSSSQKLADICLELGGYISFTGMITFPKYDALR 189

Query: 164 QLS 166
            ++
Sbjct: 190 AIA 192


>gi|254780147|ref|YP_003064560.1| 50S ribosomal protein L11 [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 142

 Score = 24.6 bits (52), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 53 YRSAQPNGTFIEYLKKEYGIKSILNLRGK 81
          +  +QP  +F  +LKKE GIKS   L GK
Sbjct: 69 FTMSQPPVSF--FLKKEVGIKSGSKLPGK 95


>gi|254780558|ref|YP_003064971.1| hypothetical protein CLIBASIA_02225 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 396

 Score = 23.5 bits (49), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 14 FYIKIL--LGVLVL-CA--VSLGLYFLTITTFTQNFHAVVPHEIYRSAQP 58
          FY +I+  LG+ +L C   V L +Y L    F      ++P+ + R   P
Sbjct: 19 FYSQIISRLGLFLLFCTFIVGLSIYILISHAFVGTISEMIPYSVIREIAP 68


>gi|254780689|ref|YP_003065102.1| flagellar motor switch protein G [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 345

 Score = 23.1 bits (48), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 12/52 (23%), Positives = 26/52 (50%)

Query: 132 LIHCKSGADRTGLASAVYLYIVAHYPKEEAHRQLSMLYGHFPVLKTITMDIT 183
           ++HC S   R  +   + L   +  P+E A  + S++     +LKT  ++++
Sbjct: 290 ILHCLSNRQRKIIEENIVLNDSSIAPREVAMARRSIVQEAISLLKTNKIELS 341


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.138    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,975
Number of Sequences: 1233
Number of extensions: 5305
Number of successful extensions: 29
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 10
length of query: 207
length of database: 328,796
effective HSP length: 70
effective length of query: 137
effective length of database: 242,486
effective search space: 33220582
effective search space used: 33220582
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 36 (18.5 bits)