HHsearch alignment for GI: 254780899 and conserved domain: COG5406
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics].
Probab=99.59 E-value=1.4e-14 Score=117.66 Aligned_cols=245 Identities=16% Similarity=0.118 Sum_probs=161.9
Q ss_pred CCCHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHH---CCCC---CCHHHHHHHHHHHHH----------HCCCCC
Q ss_conf 772033139788539999999999999999999999997---5799---889999999999999----------859830
Q gi|254780899|r 2 LSSSSRESGSINIYTPEELENIRSACNVVARCLDSLTPI---IKPG---TTTEEIDDFVLKFGM----------ENNAIP 65 (273)
Q Consensus 2 ~~~~~~~~~~~~IKs~~EI~~~R~A~~i~~~~~~~~~~~---i~~G---~se~el~~~~~~~~~----------~~g~~~ 65 (273)
T Consensus 158 ~DvslgLsk~~~~KD~~E~an~~~ss~~s~~~M~~~~~em~~~~D~~~kit~~KlsD~mes~iddv~f~q~~s~~l~~~~ 237 (1001)
T COG5406 158 SDVSLGLSKMFLTKDAEEIANCRASSAASSVLMRYFVKEMEMLWDGAFKITHGKLSDLMESLIDDVEFFQTKSLKLGDID 237 (1001)
T ss_pred HHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHCCCCCCCCC
T ss_conf 23323266776006688875310232377999999887799987400121221578876520013666643375424454
Q ss_pred CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 344332444553234464-2111212222001340579978766530002311123334444321036778776543221
Q gi|254780899|r 66 ATLNYRGYKKSCCTSINH-VICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGI 144 (273)
Q Consensus 66 ~~~~~~~f~~~~~~s~N~-~~~H~~p~d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i 144 (273)
T Consensus 238 ~d~lew~ytpiiqsg~~~Dl~psa~s~~~~-l~gd~vl~s~GiRYn~YCSn~~RT~l~-dp~~e~~~Ny~fl~~lQk~i~ 315 (1001)
T COG5406 238 LDQLEWCYTPIIQSGGSIDLTPSAFSFPME-LTGDVVLLSIGIRYNGYCSNMSRTILT-DPDSEQQKNYEFLYMLQKYIL 315 (1001)
T ss_pred HHHHHHHCCHHHCCCCEEECCCCCCCCCHH-HCCCEEEEEEEEEECCCCCCCCCEEEE-CCCHHHHHHHHHHHHHHHHHH
T ss_conf 034421035022158613056202158544-337457999513433500234415870-773676535899999999998
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHCCCEECCCC---CCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECCCC
Q ss_conf 1001121221048999999986296010475---2123322113540365315645456645116737883111443777
Q gi|254780899|r 145 AAVKLNANIEDIGKAIQRYAHSERYSVVEVF---CGHGIGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGS 221 (273)
Q Consensus 145 ~~ikpG~~~~ei~~a~~~~~~~~g~~~~~~~---~GHgiGl~~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~ 221 (273)
T Consensus 316 ~~~rpG~~~g~iY~~~~~yi~~~~pel~pnF~~nvG~~igiefR~s~~~~nv-----kn~r~lq~g~~fnis~gf~---- 386 (1001)
T COG5406 316 GLVRPGTDSGIIYSEAEKYISSNGPELGPNFIYNVGLMIGIEFRSSQKPFNV-----KNGRVLQAGCIFNISLGFG---- 386 (1001)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCEEC-----CCCCEECCCCEEEEEECCC----
T ss_conf 5207998705689999999872398647407643201113010014662542-----4784311350799961356----
Q ss_pred CCEECCCCCEEEECCCCEEEEEEEEEEECCCCCEECCCCCCCC
Q ss_conf 6256468866883378716784421898479857652679886
Q gi|254780899|r 222 SAKVLSDGWTAVTRDRSLSAQYEHTIGITKAGCEIFTLSPNNL 264 (273)
Q Consensus 222 ~~~~~~d~w~~~~~~g~~~~~~Ed~vlVT~~G~E~LT~~p~~l 264 (273)
T Consensus 387 -nl~~~------~~~Nnyal~l~dt~qi~ls~p~~~t~~~kaq 422 (1001)
T COG5406 387 -NLINP------HPKNNYALLLIDTEQISLSNPIVFTDSPKAQ 422 (1001)
T ss_pred -CCCCC------CCCCCHHHHHCCCEEEECCCCEECCCCCCCC
T ss_conf -55788------7665254441242586337860014674445