Query         gi|254780899|ref|YP_003065312.1| methionine aminopeptidase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 273
No_of_seqs    139 out of 5592
Neff          7.7 
Searched_HMMs 39220
Date          Mon May 30 03:42:35 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780899.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK12318 methionine aminopepti 100.0       0       0  500.7  22.4  252    8-262    37-291 (291)
  2 TIGR00500 met_pdase_I methioni 100.0       0       0  501.0  21.5  249   12-260     1-265 (265)
  3 PRK05716 methionine aminopepti 100.0       0       0  495.1  23.7  251   11-263     2-252 (252)
  4 PRK07281 methionine aminopepti 100.0       0       0  493.5  21.5  251   11-263     1-283 (286)
  5 PRK12897 methionine aminopepti 100.0       0       0  490.7  22.4  248   11-260     1-248 (248)
  6 PRK12896 methionine aminopepti 100.0       0       0  475.7  22.4  252    8-260     3-254 (254)
  7 cd01086 MetAP1 Methionine Amin 100.0       0       0  449.8  20.1  238   20-259     1-238 (238)
  8 COG0024 Map Methionine aminope 100.0       0       0  443.7  23.1  250   11-262     2-254 (255)
  9 KOG2738 consensus              100.0       0       0  434.0  20.4  252   10-263   112-364 (369)
 10 PRK09795 aminopeptidase; Provi 100.0       0       0  420.8  20.2  233    8-268   121-359 (361)
 11 PRK10879 proline aminopeptidas 100.0       0       0  406.5  17.0  242    6-266   165-427 (436)
 12 COG0006 PepP Xaa-Pro aminopept 100.0       0       0  403.6  17.8  237    2-266   142-382 (384)
 13 cd01087 Prolidase Prolidase. E 100.0       0       0  375.0  18.2  223   20-259     1-243 (243)
 14 cd01090 Creatinase Creatine am 100.0       0       0  367.6  19.0  226   20-259     1-228 (228)
 15 cd01092 APP-like Similar to Pr 100.0       0       0  359.4  17.9  207   20-254     1-208 (208)
 16 PRK08671 methionine aminopepti 100.0       0       0  344.9  21.6  226   20-259     2-293 (293)
 17 PRK13607 proline dipeptidase;  100.0       0       0  347.5  17.1  246    8-260   155-438 (442)
 18 cd01088 MetAP2 Methionine Amin 100.0       0       0  340.5  20.9  226   20-259     1-291 (291)
 19 cd01089 PA2G4-like Related to  100.0       0       0  337.5  19.0  216   20-259     1-228 (228)
 20 pfam00557 Peptidase_M24 Metall 100.0 1.6E-43       0  310.8  17.7  206   21-251     1-207 (207)
 21 cd01066 APP_MetAP A family inc 100.0 4.2E-43       0  308.0  19.2  206   20-254     1-207 (207)
 22 cd01085 APP X-Prolyl Aminopept 100.0 4.5E-42       0  301.1  15.2  206   22-254     6-219 (224)
 23 KOG2414 consensus              100.0 3.1E-42       0  302.2  12.8  241    5-266   219-479 (488)
 24 KOG2737 consensus              100.0 3.3E-41 1.4E-45  295.4  12.5  255    7-266   178-473 (492)
 25 TIGR00501 met_pdase_II methion 100.0 4.7E-38 1.2E-42  274.3  14.8  236   18-259     6-327 (327)
 26 cd01091 CDC68-like Related to  100.0 2.7E-37 6.9E-42  269.3  15.3  225   20-259     1-243 (243)
 27 PTZ00053 methionine aminopepti 100.0 2.2E-34 5.6E-39  249.8  20.4  239   16-261   118-433 (435)
 28 TIGR00495 crvDNA_42K DNA-bindi 100.0 5.4E-29 1.4E-33  213.9  14.2  265    1-265     1-351 (407)
 29 TIGR02993 ectoine_eutD ectoine 100.0 1.1E-28 2.8E-33  211.8  11.5  239    2-266   146-389 (391)
 30 KOG2413 consensus              100.0 9.4E-28 2.4E-32  205.6  13.0  233    6-263   299-555 (606)
 31 KOG2776 consensus               99.9 4.2E-22 1.1E-26  167.8  17.8  263    1-263     1-343 (398)
 32 KOG1189 consensus               99.9 3.3E-22 8.4E-27  168.5  13.3  241    7-267   130-385 (960)
 33 KOG2775 consensus               99.9   1E-20 2.6E-25  158.6  16.0  233   15-260    80-394 (397)
 34 COG5406 Nucleosome binding fac  99.6 1.4E-14 3.5E-19  117.7  10.9  245    2-264   158-422 (1001)
 35 cd01088 MetAP2 Methionine Amin  97.0  0.0027   7E-08   42.2   6.6   96   25-122   104-203 (291)
 36 cd01089 PA2G4-like Related to   96.9  0.0031 7.9E-08   41.9   6.4   90  128-220     3-99  (228)
 37 PRK08671 methionine aminopepti  96.8  0.0039   1E-07   41.2   6.3   91   25-118   105-200 (293)
 38 COG0024 Map Methionine aminope  96.8  0.0039 9.8E-08   41.2   6.0   86  129-219    14-102 (255)
 39 PRK09795 aminopeptidase; Provi  96.5    0.04   1E-06   34.5   9.6   80  130-219   137-218 (361)
 40 PRK12318 methionine aminopepti  96.4   0.011 2.9E-07   38.1   6.3   86  129-220    52-142 (291)
 41 cd01086 MetAP1 Methionine Amin  96.3   0.052 1.3E-06   33.7   9.3   87   22-111   109-199 (238)
 42 PRK07281 methionine aminopepti  96.2   0.019 4.8E-07   36.6   6.6   35  134-168    18-52  (286)
 43 KOG2738 consensus               96.1   0.014 3.6E-07   37.5   5.5   89  129-223   125-216 (369)
 44 TIGR00500 met_pdase_I methioni  96.1   0.027 6.8E-07   35.6   6.7   88  129-221    12-112 (265)
 45 cd01092 APP-like Similar to Pr  96.0   0.083 2.1E-06   32.3   9.1   41   23-63    105-145 (208)
 46 PRK05716 methionine aminopepti  96.0   0.074 1.9E-06   32.7   8.8   82   23-107   120-205 (252)
 47 cd01090 Creatinase Creatine am  96.0   0.086 2.2E-06   32.2   9.1   38   25-62    113-150 (228)
 48 pfam00557 Peptidase_M24 Metall  96.0   0.087 2.2E-06   32.2   9.0   82   24-108   106-189 (207)
 49 cd01066 APP_MetAP A family inc  95.9   0.061 1.5E-06   33.3   8.0   99   22-123   103-203 (207)
 50 PRK12896 methionine aminopepti  95.5    0.17 4.3E-06   30.3   8.8   39   24-62    125-163 (254)
 51 COG0006 PepP Xaa-Pro aminopept  95.3    0.17 4.4E-06   30.2   8.5   81  130-220   164-246 (384)
 52 cd01087 Prolidase Prolidase. E  95.3    0.17 4.3E-06   30.3   8.3   87   24-110   106-210 (243)
 53 PRK12897 methionine aminopepti  94.5   0.096 2.4E-06   31.9   5.4   84  130-219    14-100 (248)
 54 cd01091 CDC68-like Related to   93.9    0.41 1.1E-05   27.7   7.6   98   22-124   120-234 (243)
 55 PRK10879 proline aminopeptidas  93.9    0.59 1.5E-05   26.7   9.1   80  129-218   182-263 (436)
 56 PTZ00053 methionine aminopepti  92.7    0.47 1.2E-05   27.3   6.3   73  141-219   137-213 (435)
 57 TIGR00501 met_pdase_II methion  92.1    0.43 1.1E-05   27.6   5.5  132   10-142   112-257 (327)
 58 TIGR01857 FGAM-synthase phosph  81.7       4  0.0001   21.1   5.2   60  108-168   218-291 (1279)
 59 TIGR02176 pyruv_ox_red pyruvat  69.5     4.6 0.00012   20.7   2.8   49  204-266   373-425 (1194)
 60 TIGR01959 nuoF_fam NADH-quinon  65.5     3.4 8.6E-05   21.6   1.5  130   15-153    10-161 (420)
 61 TIGR02939 RpoE_Sigma70 RNA pol  62.7     6.2 0.00016   19.8   2.4  110   34-158    35-156 (192)
 62 KOG2611 consensus               62.3     5.8 0.00015   20.0   2.2   69   97-165   583-661 (698)
 63 TIGR00838 argH argininosuccina  52.0      16  0.0004   17.1   3.0   12  219-230   261-272 (469)
 64 TIGR01828 pyru_phos_dikin pyru  49.4      20 0.00051   16.4   4.2   49   92-143   512-566 (920)
 65 COG4786 FlgG Flagellar basal b  43.9      22 0.00055   16.2   2.7   32  226-258   107-138 (265)
 66 pfam11149 DUF2924 Protein of u  43.0      25 0.00064   15.8   4.0   39  200-264    77-115 (136)
 67 TIGR02823 oxido_YhdH putative   41.2      27 0.00068   15.6   5.0   82   91-172    74-177 (330)
 68 PRK01490 tig trigger factor; P  39.0      29 0.00073   15.4   5.1   21   90-110   153-173 (435)
 69 PRK09854 cmtB putative mannito  38.8      29 0.00074   15.4   3.1   82   78-160    58-144 (147)
 70 TIGR00438 rrmJ ribosomal RNA l  37.1      31 0.00078   15.2   2.6   42   97-151   102-144 (192)
 71 pfam02287 Dehydratase_SU Dehyd  36.5      31  0.0008   15.1   5.3   43   21-63     69-115 (136)
 72 COG1894 NuoF NADH:ubiquinone o  33.9     7.7  0.0002   19.2  -0.9  109   29-144    29-153 (424)
 73 pfam08007 Cupin_4 Cupin superf  33.7      28 0.00071   15.5   1.9   49   92-140   178-226 (320)
 74 TIGR02312 HpaH 2-oxo-hepta-3-e  32.9      20  0.0005   16.5   1.0   23   41-63     30-55  (271)
 75 pfam03881 Fructosamin_kin Fruc  31.9      37 0.00095   14.6   5.4   32  188-220   187-218 (287)
 76 pfam09657 Cas_Csx8 CRISPR-asso  30.4      39   0.001   14.5   6.0   42   13-55     81-123 (441)
 77 KOG1511 consensus               30.2      40   0.001   14.5   2.2   23  125-147   257-279 (397)
 78 PRK04750 ubiB putative ubiquin  29.4      41   0.001   14.4   2.9   63   98-167   301-367 (540)
 79 pfam07305 DUF1454 Protein of u  29.2      41   0.001   14.3   4.1   74  126-215   114-187 (200)
 80 KOG1527 consensus               28.8      13 0.00034   17.6  -0.4   75   92-170   276-363 (506)
 81 PRK08087 L-fuculose phosphate   28.5      26 0.00067   15.6   1.1   17   92-108    47-63  (215)
 82 TIGR03290 CoB_CoM_SS_C CoB--Co  28.4      31 0.00078   15.2   1.4   39  145-183    56-102 (144)
 83 COG3589 Uncharacterized conser  27.9      43  0.0011   14.2   3.5   62   91-155   162-227 (360)
 84 TIGR02669 SpoIID_LytB SpoIID/L  27.7      19 0.00049   16.6   0.2   22   13-35     19-40  (323)
 85 cd01821 Rhamnogalacturan_acety  27.2      31 0.00078   15.2   1.2   76   93-172    61-150 (198)
 86 PRK10372 L-ascorbate-specific   26.9      45  0.0011   14.1   7.3   85   78-163    59-150 (154)
 87 TIGR01980 sufB FeS assembly pr  26.7      34 0.00087   14.9   1.4   16  241-256   216-231 (469)
 88 COG2850 Uncharacterized conser  26.2      26 0.00067   15.6   0.7   46   91-136   179-224 (383)
 89 TIGR02870 spore_II_D stage II   24.8      23 0.00059   16.0   0.3   25   18-44    100-124 (358)
 90 PRK07226 fructose-bisphosphate  24.8      49  0.0013   13.8   4.7   31  116-146   110-142 (266)
 91 TIGR00337 PyrG CTP synthase; I  24.2      50  0.0013   13.8   4.1   21  148-168   149-174 (571)
 92 PRK10144 formate-dependent nit  22.9      53  0.0014   13.6   4.1   30   27-56     56-85  (126)
 93 TIGR03541 reg_near_HchA LuxR f  22.2      55  0.0014   13.5   4.4   30   34-63      4-33  (232)
 94 PRK10188 DNA-binding transcrip  22.2      55  0.0014   13.5   4.4   27   36-62     12-38  (240)
 95 PRK08333 L-fuculose phosphate   21.2      36 0.00092   14.7   0.7   15   93-107    46-60  (189)
 96 PRK09220 hypothetical protein;  21.0      39 0.00099   14.5   0.8   37   92-139    50-87  (205)
 97 TIGR03147 cyt_nit_nrfF cytochr  20.6      59  0.0015   13.3   4.0   30   27-56     56-85  (126)
 98 PRK06754 mtnB methylthioribulo  20.3      52  0.0013   13.6   1.3   56   47-108     8-67  (208)

No 1  
>PRK12318 methionine aminopeptidase; Provisional
Probab=100.00  E-value=0  Score=500.74  Aligned_cols=252  Identities=43%  Similarity=0.704  Sum_probs=238.4

Q ss_pred             HCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCCCCCCCCC
Q ss_conf             13978853999999999999999999999999757998899999999999998598303443324--4455323446421
Q gi|254780899|r    8 ESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRG--YKKSCCTSINHVI   85 (273)
Q Consensus         8 ~~~~~~IKs~~EI~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~--f~~~~~~s~N~~~   85 (273)
                      ....|.||||+||+.||+||+|++++++.+.+.++||+||.||+..+++++.++|++|++++|.+  ||.++|+|+|+++
T Consensus        37 ~~~~i~IKs~eEIe~mR~A~~I~a~~~~~~~~~ikpGvTe~Eld~~~~~~~~~~ga~pa~l~y~~~~Fp~~vc~s~N~~v  116 (291)
T PRK12318         37 SQYDIIIKTPEQIEKIRKACQITARILDALCEAAKEGVTTNELDQLSRELHKKYDAIPAPLNYGHPPFPKTICTSLNEVI  116 (291)
T ss_pred             CCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEECCCEE
T ss_conf             76885768999999999999999999999983687999899999999999998789867667788788874487238873


Q ss_pred             CCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             11212222001340579978766530002311123334444321036778776543221100112122104899999998
Q gi|254780899|r   86 CHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAH  165 (273)
Q Consensus        86 ~H~~p~d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~  165 (273)
                      |||+|++++|++||+|++|+|+.|+||++|++|||++|+++++++++++++++|++++++++|||++++||+.+++++++
T Consensus       117 ~HgiP~~~~Lk~GDlV~iD~G~~y~GY~sD~tRT~~vG~~s~~~~~l~~~v~~A~~~aI~~ikpG~~~~dI~~ai~~~~~  196 (291)
T PRK12318        117 CHGIPNDIPLKNGDIMNIDVSCIVDGYYGDCSRMVMIGEVSEIKKKVCQASLECLNAAIAILKPNLPLYEIGEVIENCAD  196 (291)
T ss_pred             ECCCCCCCCCCCCCEEEEECCEEECCEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             16899986167999899956786898971213145348898999999999999999999980799647799999999999


Q ss_pred             HCCCEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECCCCCC-EECCCCCEEEECCCCEEEEEE
Q ss_conf             6296010475212332211354036531564545664511673788311144377762-564688668833787167844
Q gi|254780899|r  166 SERYSVVEVFCGHGIGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSA-KVLSDGWTAVTRDRSLSAQYE  244 (273)
Q Consensus       166 ~~g~~~~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~-~~~~d~w~~~~~~g~~~~~~E  244 (273)
                      ++||+++++|+|||||+++||.|.|+|+..   ....+|+||||||||||||+++... ..++|+||++|.||++++|||
T Consensus       197 ~~G~~~~~~~~GHGIG~~vHE~P~I~~~~~---~~~~~L~pGMV~TIEPgI~~g~~~~~~~~~d~Wt~~t~d~~~~a~~E  273 (291)
T PRK12318        197 TYGFSVVDQFVGHGVGIKFHENPYVPHHRN---RSKIPLAPGMIFTIEPMINVGKKEGVIDPINHWEARTCDNQPSAQWE  273 (291)
T ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCEECCCCEEEECCCCCCCCCCCEECCCCCCEEEECCCCEEEEEC
T ss_conf             849911768002872731034886564569---99878379998987992124788747737898579914998475615


Q ss_pred             EEEEECCCCCEECCCCCC
Q ss_conf             218984798576526798
Q gi|254780899|r  245 HTIGITKAGCEIFTLSPN  262 (273)
Q Consensus       245 d~vlVT~~G~E~LT~~p~  262 (273)
                      |||+||++|+|+||...+
T Consensus       274 htvlIT~~G~eiLT~~d~  291 (291)
T PRK12318        274 HTILITETGYEILTLLDK  291 (291)
T ss_pred             EEEEEECCCCEECCCCCC
T ss_conf             589991992678146899


No 2  
>TIGR00500 met_pdase_I methionine aminopeptidase, type I; InterPro: IPR002467   Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This group of metallopeptidases belong to MEROPS peptidase family M24 (clan MG), subfamily M24A.   Methionine aminopeptidase (3.4.11.18 from EC) (MAP) is responsible for the removal of the amino-terminal (initiator) methionine from nascent eukaryotic cytosolic and cytoplasmic prokaryotic proteins if the penultimate amino acid is small and uncharged. All MAP studied to date are monomeric proteins that require cobalt ions for activity. Two subfamilies of MAP enzymes are known to exist , . While being evolutionary related, they only share a limited amount of sequence similarity mostly clustered around the residues shown, in the Escherichia coli MAP , to be involved in cobalt-binding. The first family consists of enzymes from prokaryotes as well as eukaryotic MAP-1, while the second group (IPR002468 from INTERPRO) is made up of archaeal MAP and eukaryotic MAP-2. ; GO: 0004239 methionyl aminopeptidase activity, 0006508 proteolysis.
Probab=100.00  E-value=0  Score=500.99  Aligned_cols=249  Identities=45%  Similarity=0.772  Sum_probs=243.0

Q ss_pred             EEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCCCCCCCC------CCC---CCCCCCC
Q ss_conf             885399999999999999999999999975799889999999999999859-830344332------444---5532344
Q gi|254780899|r   12 INIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENN-AIPATLNYR------GYK---KSCCTSI   81 (273)
Q Consensus        12 ~~IKs~~EI~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g-~~~~~~~~~------~f~---~~~~~s~   81 (273)
                      ++|||++||+.||+||+|+.+++..+...++||+|+.||+..+.+++.+++ |+|||++|+      +||   .++|+|+
T Consensus         1 i~l~s~~Ei~kirkag~l~a~vl~~~~~~v~PGvST~eLD~i~~~~i~~~~hA~pAf~GY~PPfsdvgfPPft~~~C~S~   80 (265)
T TIGR00500         1 ISLKSKDEIEKIRKAGRLVAEVLEILEREVKPGVSTKELDRIAKDFIEKRGHAKPAFLGYYPPFSDVGFPPFTGSVCISV   80 (265)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             95578989999999999999999999863689887899999999999847972353567877866687885556156321


Q ss_pred             CCCCCCCCCC-CCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCHHHH
Q ss_conf             6421112122-220013405799787665300023111233344-443210367787765432211-0011212210489
Q gi|254780899|r   82 NHVICHGIPS-NKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGK-IKRAAERILQVTYESLYKGIA-AVKLNANIEDIGK  158 (273)
Q Consensus        82 N~~~~H~~p~-d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~-~~~~~~~l~~~~~~a~~~~i~-~ikpG~~~~ei~~  158 (273)
                      |+.|+||+|+ .++|++||+|.||+|+.|+||++|.++||++|+ ++++.++|.+++++|+..||+ .+|||++..||.+
T Consensus        81 Ne~V~HGiP~~~~vLKdGDivniD~g~~~~Gy~gD~a~Tf~~G~n~~~~~~KLl~~t~esl~~aI~P~~kpG~~~~~ig~  160 (265)
T TIGR00500        81 NEVVIHGIPDKKKVLKDGDIVNIDVGVIYDGYYGDTAITFLVGKNVSPEAEKLLEATEESLYKAIEPEIKPGKRIGEIGK  160 (265)
T ss_pred             CCEEEECCCCCCCEEECCCEEEEEEEEEECCEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf             67888513884726513677875577886030211323134138778767889999999998522310147988778999


Q ss_pred             HHHHHHHHCCCEECCCCCCCCCCCCCCCCC-EEEECCCCCCC--CCCEECCCCEEEECCEEECCCCCCEECCCCCEEEEC
Q ss_conf             999999862960104752123322113540-36531564545--664511673788311144377762564688668833
Q gi|254780899|r  159 AIQRYAHSERYSVVEVFCGHGIGKSFHEKP-EILHFYDPLYP--SVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTR  235 (273)
Q Consensus       159 a~~~~~~~~g~~~~~~~~GHgiGl~~hE~P-~i~~~~~~~~~--~~~~le~GMV~aiEP~i~~~~~~~~~~~d~w~~~~~  235 (273)
                      |+++++++.||.+++.|||||||..+||+| .|+||..+...  ...+|++|||||||||++.+...+.++.||||+.|.
T Consensus       161 AI~~~~~~~GF~vvr~y~GHGiG~~~HeePn~ipnY~~~~~K~nsn~~lk~GMV~~iEPMv~~~~~e~~~~~DgWTV~T~  240 (265)
T TIGR00500       161 AIEKYAEEKGFSVVREYCGHGIGRKLHEEPNQIPNYYKKFTKKNSNVRLKEGMVFAIEPMVNTGTEEIVIAADGWTVKTK  240 (265)
T ss_pred             HHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEECCEEECCCCEEEECCCCCEEEEE
T ss_conf             99999876299786145276437744557353666667777667887106875788626121788225671688768700


Q ss_pred             CCCEEEEEEEEEEECCCCCEECCCC
Q ss_conf             7871678442189847985765267
Q gi|254780899|r  236 DRSLSAQYEHTIGITKAGCEIFTLS  260 (273)
Q Consensus       236 ~g~~~~~~Ed~vlVT~~G~E~LT~~  260 (273)
                      |+++++|+||||+||++|+|+||..
T Consensus       241 D~~~~AhfEHT~~iT~~g~~ILT~~  265 (265)
T TIGR00500       241 DGSLSAHFEHTIVITENGPEILTER  265 (265)
T ss_pred             CCCEEEEEEEEEEEECCEEEEECCC
T ss_conf             7742101578999988915780269


No 3  
>PRK05716 methionine aminopeptidase; Validated
Probab=100.00  E-value=0  Score=495.07  Aligned_cols=251  Identities=53%  Similarity=0.924  Sum_probs=243.3

Q ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             78853999999999999999999999999757998899999999999998598303443324445532344642111212
Q gi|254780899|r   11 SINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSINHVICHGIP   90 (273)
Q Consensus        11 ~~~IKs~~EI~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~N~~~~H~~p   90 (273)
                      +|||||++||++||+|++++++++.++.+.++||+||.||+..++..+.+.|+.+++.++.+||.++|+|.|+.++|+.|
T Consensus         2 ~~sIKs~~EI~~mR~Aa~i~~~~~~~~~~~i~pG~te~El~~~~~~~~~~~Ga~~~~~~~~~~p~~i~~s~n~~~~H~~p   81 (252)
T PRK05716          2 AITIKTPEEIEKMRVAGRIAAEVLDEIEPHVKPGVTTKELDRIAEDYIREQGAIPAPLGYHGFPKSICTSVNEVVCHGIP   81 (252)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCEECCCC
T ss_conf             15756899999999999999999999998775999799999999999998779315556678887459517855327999


Q ss_pred             CCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCE
Q ss_conf             22200134057997876653000231112333444432103677877654322110011212210489999999862960
Q gi|254780899|r   91 SNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYS  170 (273)
Q Consensus        91 ~d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~g~~  170 (273)
                      ++++|++||+|++|+|+.|+||++|++|||++|+|+++++++|+++++|++++++++|||++++||++++++++++.||+
T Consensus        82 ~~r~l~~Gd~v~iD~g~~~~GY~sD~tRT~~vG~~s~~~~~~~~~~~~a~~~~i~~ikPG~~~~dv~~a~~~~~~~~g~~  161 (252)
T PRK05716         82 SDKVLKEGDIVNIDVTVIKDGYHGDTSRTFIVGEVSPEDKRLCEVTKEALYLGIKAVKPGARLGDIGHAIQKYAEAEGFS  161 (252)
T ss_pred             CCCCCCCCCEEEEEEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             88351689989998635677774664503542861036799998999999999997567980899999999999975887


Q ss_pred             ECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECCCCCCEECCCCCEEEECCCCEEEEEEEEEEEC
Q ss_conf             10475212332211354036531564545664511673788311144377762564688668833787167844218984
Q gi|254780899|r  171 VVEVFCGHGIGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHTIGIT  250 (273)
Q Consensus       171 ~~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~~~d~w~~~~~~g~~~~~~Ed~vlVT  250 (273)
                      .+++|+|||||+.+||+|.+++++.+  +++++|||||||||||+||.+..++..++|+|++++.||.+++|||||||||
T Consensus       162 ~~~~~~GHgiGl~~hE~P~i~~~~~~--~~~~~Le~GMV~tiEP~i~~~~~~~~~~~D~w~~~~~~g~~~~riEd~VlVT  239 (252)
T PRK05716        162 VVREYCGHGIGRVFHEEPQVLHYGAP--GDGPVLKEGMVFTIEPMINAGKREVKTLKDGWTVVTKDGSLSAQYEHTVAVT  239 (252)
T ss_pred             CEECCCCCCCCCCCCCCCEECCCCCC--CCCCCCCCCCEEEEECEEECCCCCEEECCCCCEEEECCCCEEEEEEEEEEEC
T ss_conf             20021245567766769703565569--9985356982899816150588743886898768822797078863099990


Q ss_pred             CCCCEECCCCCCC
Q ss_conf             7985765267988
Q gi|254780899|r  251 KAGCEIFTLSPNN  263 (273)
Q Consensus       251 ~~G~E~LT~~p~~  263 (273)
                      +||||+||++|++
T Consensus       240 e~G~E~LT~~p~e  252 (252)
T PRK05716        240 EDGPEILTLRPEE  252 (252)
T ss_pred             CCCCEECCCCCCC
T ss_conf             9937789889998


No 4  
>PRK07281 methionine aminopeptidase; Reviewed
Probab=100.00  E-value=0  Score=493.51  Aligned_cols=251  Identities=34%  Similarity=0.575  Sum_probs=239.8

Q ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC----CCCCCCCCCCCCCC
Q ss_conf             78853999999999999999999999999757998899999999999998598303443324----44553234464211
Q gi|254780899|r   11 SINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRG----YKKSCCTSINHVIC   86 (273)
Q Consensus        11 ~~~IKs~~EI~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~----f~~~~~~s~N~~~~   86 (273)
                      .|+|||++||++||+|++|++++++++.+.+|||+|+.||++.+++.+.++|+.|+++++.+    ||.++|+|+|+++|
T Consensus         1 mi~IKs~~EIe~mr~A~~i~a~~~~~~~~~ikpGit~~eld~~~~~~~~e~ga~p~~~g~~g~~~~fp~~vc~svN~~v~   80 (286)
T PRK07281          1 MITLKSAREIEAMDRAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEDNVLPLQIGVDGHMMDYPYATCCGLNDEVA   80 (286)
T ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCEEEECCCCCC
T ss_conf             90706999999999999999999998884676999899999999999997597243347877655788513642276004


Q ss_pred             CCCCCCCCCCCCEEEEEEEEE---------------------------EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             121222200134057997876---------------------------65300023111233344443210367787765
Q gi|254780899|r   87 HGIPSNKQLREGDIVNVDVTY---------------------------VVNGWHGDSSRMYPVGKIKRAAERILQVTYES  139 (273)
Q Consensus        87 H~~p~d~~l~~GD~v~iD~g~---------------------------~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a  139 (273)
                      ||+|++++|++||+|+||+++                           .|+||++|.+|||.+|++++++++|++++++|
T Consensus        81 HgiP~~~~l~~GDiV~iD~~~g~~~d~~~~D~~~~~~~~~~~~~~~~~~y~G~~~D~~~t~~vG~~~~~~~~L~~v~~eA  160 (286)
T PRK07281         81 HAFPRHYILKEGDLLKVDMVLSEPLDKSIVDVSKLDFDNVEQMKKYTESYRGGLADSCWAYAVGTPSDEVKNLMDVTKEA  160 (286)
T ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             89987774689998999635542345433442111233322111322233753501589998879899999999999999


Q ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECC
Q ss_conf             43221100112122104899999998629601047521233221135403653156454566451167378831114437
Q gi|254780899|r  140 LYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVG  219 (273)
Q Consensus       140 ~~~~i~~ikpG~~~~ei~~a~~~~~~~~g~~~~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~  219 (273)
                      +.++|+++|||++++||+.+++++++++||+++++|+|||||+.+||+|.|+|++.+.  ...+|+|||||||||||+.+
T Consensus       161 l~~gI~~~~pG~~~~dI~~ai~~~~~~~Gygvv~~~~GHGIG~~~HE~P~V~~y~~~~--~g~~L~~GMv~tIEPmi~~g  238 (286)
T PRK07281        161 MYRGIEKAVVGNRIGDIGAAIQEYAESRGYGVVRDLVGHGVGPTMHEEPMVPNYGTAG--RGLRLREGMVLTIEPMINTG  238 (286)
T ss_pred             HHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEEEEECEECCC
T ss_conf             9999997349978856889999999984996777854676575354698367767489--99686469889980617169


Q ss_pred             CCCCEE-CCCCCEEEECCCCEEEEEEEEEEECCCCCEECCCCCCC
Q ss_conf             776256-46886688337871678442189847985765267988
Q gi|254780899|r  220 GSSAKV-LSDGWTAVTRDRSLSAQYEHTIGITKAGCEIFTLSPNN  263 (273)
Q Consensus       220 ~~~~~~-~~d~w~~~~~~g~~~~~~Ed~vlVT~~G~E~LT~~p~~  263 (273)
                      +..+.. ++|+||++|.||++++||||||+||++|+|+||+.+++
T Consensus       239 ~~~~~~d~~dgWt~~t~Dg~~sa~~EhtvlIT~~G~eVLT~~~~e  283 (286)
T PRK07281        239 TWEIDTDMKTGWAHKTLDGGLSCQYEHQFVITKDGPVILTSQGEE  283 (286)
T ss_pred             CCCEEEECCCCEEEEECCCCEEEEECEEEEEECCCCEEECCCCCC
T ss_conf             861564579974899489987773055999979912894088667


No 5  
>PRK12897 methionine aminopeptidase; Reviewed
Probab=100.00  E-value=0  Score=490.69  Aligned_cols=248  Identities=43%  Similarity=0.689  Sum_probs=240.0

Q ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             78853999999999999999999999999757998899999999999998598303443324445532344642111212
Q gi|254780899|r   11 SINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSINHVICHGIP   90 (273)
Q Consensus        11 ~~~IKs~~EI~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~N~~~~H~~p   90 (273)
                      .|+|||++||++||+|++|++++++.+.+.++||+||.||++.++.++.++|+.+.+.+|.+||.++|+|.|+++||+.|
T Consensus         1 m~~IKs~~EIe~mr~A~~I~~~~~~~~~~~ikpG~te~el~~~~e~~~~~~Ga~~~~~g~~~fp~~v~~s~n~~~~Hg~p   80 (248)
T PRK12897          1 MITIKTKNEIDLMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGYNGYPYAICASVNDEMCHAFP   80 (248)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
T ss_conf             92107999999999999999999999997776999899999999999998599666457788880689506860667899


Q ss_pred             CCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCE
Q ss_conf             22200134057997876653000231112333444432103677877654322110011212210489999999862960
Q gi|254780899|r   91 SNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYS  170 (273)
Q Consensus        91 ~d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~g~~  170 (273)
                      ++++|++||+|++|+|+.|+||++|++|||++|+++++++++++++++|+.++++++|||++++||+.++++++.++||+
T Consensus        81 ~~~~l~~GD~V~iD~G~~~~GY~sD~tRT~~vG~~~~~~~~l~~~~~~A~~~~i~~~~~G~~~~di~~a~~~~~~~~G~~  160 (248)
T PRK12897         81 ADVPLTEGDIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAEKLLLVAENALYKGIDQAVIGNRVGDIGYAIESYVANEGFS  160 (248)
T ss_pred             CCCCCCCCCEEEEECCEEECCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf             98514589999995748899996276335567877889999999999999999986258978424489999999876971


Q ss_pred             ECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECCCCCCEECCCCCEEEECCCCEEEEEEEEEEEC
Q ss_conf             10475212332211354036531564545664511673788311144377762564688668833787167844218984
Q gi|254780899|r  171 VVEVFCGHGIGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHTIGIT  250 (273)
Q Consensus       171 ~~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~~~d~w~~~~~~g~~~~~~Ed~vlVT  250 (273)
                      +.++|+|||||+++||.|.|+|++.+  ++..+|++|||||||||||++......+.|+||++|.||++|+||||||+||
T Consensus       161 ~~~~~~GHGiG~~vHE~P~i~~~~~~--~~~~~L~~GMv~tIEPgI~~g~~~~~~~~d~W~~~~~~g~~g~r~E~~vlVT  238 (248)
T PRK12897        161 VARDFTGHGIGKEIHEEPAIFHFGKQ--GQGPELQEGMVITIEPIVNVGMRYSKVDLNGWTARTMDGKLSAQYEHTIAIT  238 (248)
T ss_pred             EECCCCCCHHCCCCCCCCCCCCCCCC--CCCCCCCCCCEEEEECEEECCCCCEEECCCCCEEECCCCCEEEEEEEEEEEE
T ss_conf             60781502001486668862667759--9996746897899825460586514655999879835998799960599992


Q ss_pred             CCCCEECCCC
Q ss_conf             7985765267
Q gi|254780899|r  251 KAGCEIFTLS  260 (273)
Q Consensus       251 ~~G~E~LT~~  260 (273)
                      +||||+||+.
T Consensus       239 ~dG~eiLT~~  248 (248)
T PRK12897        239 KDGPIILTKL  248 (248)
T ss_pred             CCCCEECCCC
T ss_conf             9915782359


No 6  
>PRK12896 methionine aminopeptidase; Reviewed
Probab=100.00  E-value=0  Score=475.65  Aligned_cols=252  Identities=40%  Similarity=0.723  Sum_probs=241.0

Q ss_pred             HCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             13978853999999999999999999999999757998899999999999998598303443324445532344642111
Q gi|254780899|r    8 ESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSINHVICH   87 (273)
Q Consensus         8 ~~~~~~IKs~~EI~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~N~~~~H   87 (273)
                      +.++|+||||+||++||+|++|++++++++.+.++||+||.||+..+++.+.+.|+.+++.++.+|+.++|+|.|+.++|
T Consensus         3 ~~~~~~IKs~~EI~~mR~Aa~i~~~~~~~~~~~i~pG~te~el~~~~~~~~~~~Ga~~~~~~~~~f~~~~~~s~n~~~~H   82 (254)
T PRK12896          3 SPRGMEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTAELDRIAEKRLEEHGAIPAPEGYYGFPGSTCISVNEEVAH   82 (254)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCC
T ss_conf             85774537899999999999999999999998776999799999999999998699115555557887417368876447


Q ss_pred             CCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             21222200134057997876653000231112333444432103677877654322110011212210489999999862
Q gi|254780899|r   88 GIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSE  167 (273)
Q Consensus        88 ~~p~d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~  167 (273)
                      +.|++++|++||+|++|+|+.|+||++|++|||++|+++++++++|++++++++++++++|||++++||+.+++++++++
T Consensus        83 ~~p~~r~l~~Gd~v~iD~g~~~~GY~sD~tRT~~vG~~~~~~~~l~~~~~ea~~~~i~~ikPG~~~~di~~a~~~~~~~~  162 (254)
T PRK12896         83 GIPGPRVIKDGDLVNIDVSAYKDGYHGDTGATFAVGPVSEEAEKLCRVAEEALWAGIKQVKAGRPLNDIGRAIEDFAKKN  162 (254)
T ss_pred             CCCCCCCCCCCCEEEEEEEEEECCEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf             89988545699899985339999892556651541752167999999999999999998359980899999999999986


Q ss_pred             CCEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECCCCCCEECCCCCEEEECCCCEEEEEEEEE
Q ss_conf             96010475212332211354036531564545664511673788311144377762564688668833787167844218
Q gi|254780899|r  168 RYSVVEVFCGHGIGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHTI  247 (273)
Q Consensus       168 g~~~~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~~~d~w~~~~~~g~~~~~~Ed~v  247 (273)
                      ||..+++|+|||||+++||.|.++++.. ...++.+|+||||||||||+|++...+..++|+|++.+.|+++++||||||
T Consensus       163 G~~~~~~~~GHGiGl~~HE~P~~~~~~~-~~~~~~~Le~GMV~tiEP~i~~~~~~~~~~~d~w~~~~~~~~~~vr~Ed~v  241 (254)
T PRK12896        163 GYSVVRNLTGHGVGRSLHEEPSVINYRT-DPSPNRLLRPGMVLAIEPFLNLGAKDTEELDDGWTVVTPDKSLSAQFEHTV  241 (254)
T ss_pred             CCCEEECCCEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCEEEEECEEECCCCCEEECCCCCEEECCCCCEEEEEEEEE
T ss_conf             9856742342555021267875477676-898870702796899805040487640665888658714896289970499


Q ss_pred             EECCCCCEECCCC
Q ss_conf             9847985765267
Q gi|254780899|r  248 GITKAGCEIFTLS  260 (273)
Q Consensus       248 lVT~~G~E~LT~~  260 (273)
                      |||+||||+||..
T Consensus       242 lVTe~G~e~LT~~  254 (254)
T PRK12896        242 VVTRDGPEILTLR  254 (254)
T ss_pred             EECCCCCEECCCC
T ss_conf             9929933764278


No 7  
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=100.00  E-value=0  Score=449.78  Aligned_cols=238  Identities=51%  Similarity=0.872  Sum_probs=230.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             99999999999999999999757998899999999999998598303443324445532344642111212222001340
Q gi|254780899|r   20 LENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSINHVICHGIPSNKQLREGD   99 (273)
Q Consensus        20 I~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~N~~~~H~~p~d~~l~~GD   99 (273)
                      |++||+|++|+++++.++++.++||+||.||++.++..+.++|+++++.++.+||.++|+|.|++++|+.|++++|++||
T Consensus         1 Ie~mR~A~~i~~~a~~~~~~~irpG~tE~ei~~~~~~~~~~~Ga~~~~~~~~~f~~~~~~s~N~~~~H~~p~~~~l~~Gd   80 (238)
T cd01086           1 IEGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSICTSVNEVVCHGIPDDRVLKDGD   80 (238)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             98999999999999999998776899599999999999998739715555678886247325745037999884546999


Q ss_pred             EEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCC
Q ss_conf             57997876653000231112333444432103677877654322110011212210489999999862960104752123
Q gi|254780899|r  100 IVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHG  179 (273)
Q Consensus       100 ~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~g~~~~~~~~GHg  179 (273)
                      +|++|+|+.|+||++|++|||++|+++++++++|++++++++++++++|||++++||+++++++++++||+.+++++|||
T Consensus        81 ~v~~D~g~~~~gY~sD~tRT~~vG~~~~~~~~~~~~v~ea~~~~i~~~kpG~~~~ev~~a~~~~~~~~g~~~~~~~~GHg  160 (238)
T cd01086          81 IVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVEVTEEALYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSVVREFGGHG  160 (238)
T ss_pred             EEEEECCEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECC
T ss_conf             89996206688784551576625936899999999999999999987169989999999999999986998354633262


Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECCCCCCEECCCCCEEEECCCCEEEEEEEEEEECCCCCEECCC
Q ss_conf             32211354036531564545664511673788311144377762564688668833787167844218984798576526
Q gi|254780899|r  180 IGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHTIGITKAGCEIFTL  259 (273)
Q Consensus       180 iGl~~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~~~d~w~~~~~~g~~~~~~Ed~vlVT~~G~E~LT~  259 (273)
                      ||+.+||+|.+++++.+  +++.+|++||||||||++|++..+...++|+|++.+.||.+|+|+||||+||+||||+||.
T Consensus       161 vGl~~he~P~i~~~~~~--~~~~~L~~GmV~tiEP~i~~~~~~~~~~~d~w~~~~~~~~~g~riEd~ilITe~G~e~LT~  238 (238)
T cd01086         161 IGRKFHEEPQIPNYGRP--GTGPKLKPGMVFTIEPMINLGTYEVVTLPDGWTVVTKDGSLSAQFEHTVLITEDGPEILTL  238 (238)
T ss_pred             CCCCCCCCCCCCCCCCC--CCCCCCCCCCEEEEECEEECCCCCEEECCCCCEEECCCCCCEEEEEEEEEECCCCCEECCC
T ss_conf             46776669862644548--9984056984899926484388743887898768702897178873199993997766779


No 8  
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=100.00  E-value=0  Score=443.70  Aligned_cols=250  Identities=46%  Similarity=0.778  Sum_probs=238.1

Q ss_pred             CEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             78853999999999999999999999999757998899999999999998598303443324445532344642111212
Q gi|254780899|r   11 SINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSINHVICHGIP   90 (273)
Q Consensus        11 ~~~IKs~~EI~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~N~~~~H~~p   90 (273)
                      .+.|||++||+.||+|++|+.++++++.+.++||+|+.||+.++++++.+.|++|++++|.+||.++|+|+|++++||+|
T Consensus         2 ~i~ikt~~eiek~r~Ag~i~a~~l~~~~~~v~pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~ciSvNe~v~HgiP   81 (255)
T COG0024           2 MISIKTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCISVNEVVAHGIP   81 (255)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEHHCCCCCCCCCEEEEHHHEEEECCC
T ss_conf             75327999999999999999999999998717999799999999999997486361106669885638403150351478


Q ss_pred             C-CCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             2-220013405799787665300023111233344443-21036778776543221100112122104899999998629
Q gi|254780899|r   91 S-NKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKR-AAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSER  168 (273)
Q Consensus        91 ~-d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~-~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~g  168 (273)
                      + +++|++||+|+||+|++++||++|.++||.+|+.++ ..++|.+++++|+.++|+++|||+++++|.++++++++++|
T Consensus        82 ~d~~vlk~GDiv~IDvg~~~dG~~~Dsa~T~~vg~~~~~~~~~L~~~t~eal~~~I~~vkpG~~l~~Ig~aIq~~~~~~G  161 (255)
T COG0024          82 GDKKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDEDAKRLLEATKEALYAGIEAVKPGARLGDIGRAIQEYAESRG  161 (255)
T ss_pred             CCCCCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             98734589998999889997772465789998788773789999999999999998750699888999999999999769


Q ss_pred             CEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECCCCCCEECC-CCCEEEECCCCEEEEEEEEE
Q ss_conf             60104752123322113540365315645456645116737883111443777625646-88668833787167844218
Q gi|254780899|r  169 YSVVEVFCGHGIGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLS-DGWTAVTRDRSLSAQYEHTI  247 (273)
Q Consensus       169 ~~~~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~~~-d~w~~~~~~g~~~~~~Ed~v  247 (273)
                      |++++.|+|||+|..+||.|+++|++....+  .+|++|||||||||++.+...+..++ |+|+++|.||++++||||||
T Consensus       162 ~~vVr~~~GHgig~~~He~p~ip~y~~~~~~--~~l~~Gmv~aIEPmi~~G~~~~~~~~~d~Wt~~t~d~~~~aq~EHTv  239 (255)
T COG0024         162 FSVVRNLTGHGIGRELHEEPSIPNYGKDGTG--VRLKEGMVFAIEPMINTGSGEVVEGPSDRWTLVTKDGSLSAQFEHTV  239 (255)
T ss_pred             CEEEECCCCCCCCCCCCCCCEECCCCCCCCC--CCCCCCCEEEEEEEEECCCCCEEECCCCCEEEEECCCCEEEEEEEEE
T ss_conf             8771466477567545799702564688887--24369979997027875987327448997699947998775788899


Q ss_pred             EECCCCCEECCCCCC
Q ss_conf             984798576526798
Q gi|254780899|r  248 GITKAGCEIFTLSPN  262 (273)
Q Consensus       248 lVT~~G~E~LT~~p~  262 (273)
                      +||++|+|+||..+.
T Consensus       240 ~Vt~~g~eilT~~~~  254 (255)
T COG0024         240 IVTEDGCEILTLRPE  254 (255)
T ss_pred             EEECCCCEEEECCCC
T ss_conf             992798489407889


No 9  
>KOG2738 consensus
Probab=100.00  E-value=0  Score=434.02  Aligned_cols=252  Identities=45%  Similarity=0.796  Sum_probs=243.4

Q ss_pred             CCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             97885399999999999999999999999975799889999999999999859830344332444553234464211121
Q gi|254780899|r   10 GSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSINHVICHGI   89 (273)
Q Consensus        10 ~~~~IKs~~EI~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~N~~~~H~~   89 (273)
                      ..+.|+++++|+.||+||+++.++++++...++||+|+.||+..++++++++|++|++++|++||.++|+|+|.++|||+
T Consensus       112 ~~i~i~~~e~ie~mR~ac~LarevLd~Aa~~v~PgvTTdEiD~~VH~a~Ierg~YPSPLnYy~FPKS~CTSVNEviCHGI  191 (369)
T KOG2738         112 NEIKILDPEGIEGMRKACRLAREVLDYAATLVRPGVTTDEIDRAVHNAIIERGAYPSPLNYYGFPKSVCTSVNEVICHGI  191 (369)
T ss_pred             CCEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHHEEECCC
T ss_conf             62351588999999999999999999875025797638899999999998648858875457886666242221465478


Q ss_pred             CCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             22220013405799787665300023111233344443210367787765432211001121221048999999986296
Q gi|254780899|r   90 PSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERY  169 (273)
Q Consensus        90 p~d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~g~  169 (273)
                      |..|+|++||+|+||+...++|||+|..+||++|++++..++|.+..+++++.+|+++|||+++.+|...++++..++||
T Consensus       192 PD~RpLedGDIvNiDVtvY~~GyHGDlneTffvG~Vde~~k~LVkvT~EcL~kaI~~~kpGv~freiG~iI~kha~~~g~  271 (369)
T KOG2738         192 PDSRPLEDGDIVNIDVTVYLNGYHGDLNETFFVGNVDEKAKKLVKVTRECLEKAIAIVKPGVSFREIGNIIQKHATKNGY  271 (369)
T ss_pred             CCCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             88672777987868899994252576544268403698898899999999999887708960499999999987655176


Q ss_pred             EECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECCCCCCEECCCCCEEEECCCCEEEEEEEEEEE
Q ss_conf             01047521233221135403653156454566451167378831114437776256468866883378716784421898
Q gi|254780899|r  170 SVVEVFCGHGIGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHTIGI  249 (273)
Q Consensus       170 ~~~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~~~d~w~~~~~~g~~~~~~Ed~vlV  249 (273)
                      ++++.|+|||||.-+|-.|.|+||.+.  ....+|.+||+|||||||++|...-..|+|+||++|+||++++|||||+||
T Consensus       272 sVVr~ycGHGig~~FH~~PnipHya~n--~a~GvM~~G~tFTIEPmit~G~~~d~tWPD~WT~vTaDG~~sAQFEhTlLV  349 (369)
T KOG2738         272 SVVRSYCGHGIGRVFHCAPNIPHYAKN--KAPGVMKPGQTFTIEPMITIGTWEDITWPDDWTAVTADGKRSAQFEHTLLV  349 (369)
T ss_pred             EEEHHHHCCCCCCCCCCCCCCHHHCCC--CCCCEEECCCEEEEEEEECCCCCCCCCCCCCCEEEECCCCEECCEEEEEEE
T ss_conf             001132056655301468886001046--776344268558863024036655554899863781388511113568998


Q ss_pred             CCCCCEECCCC-CCC
Q ss_conf             47985765267-988
Q gi|254780899|r  250 TKAGCEIFTLS-PNN  263 (273)
Q Consensus       250 T~~G~E~LT~~-p~~  263 (273)
                      |++|+|+||+. |..
T Consensus       350 T~tG~EILT~r~~~~  364 (369)
T KOG2738         350 TETGCEILTKRLPNS  364 (369)
T ss_pred             ECCCCEEHHCCCCCC
T ss_conf             236600011026899


No 10 
>PRK09795 aminopeptidase; Provisional
Probab=100.00  E-value=0  Score=420.76  Aligned_cols=233  Identities=24%  Similarity=0.366  Sum_probs=212.1

Q ss_pred             HCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             13978853999999999999999999999999757998899999999999998598303443324445532344642111
Q gi|254780899|r    8 ESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSINHVICH   87 (273)
Q Consensus         8 ~~~~~~IKs~~EI~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~N~~~~H   87 (273)
                      .+..|.||||+||++||+|++|+++++.++.+.++||+||.||++.+...+.+.|+..     .+|++++++|.|++.||
T Consensus       121 ~~~lR~IKs~~EI~~ir~A~~iad~~~~~~~~~i~~G~tE~eiaa~~~~~~~~~Ga~~-----~sf~~iv~sG~~~a~pH  195 (361)
T PRK09795        121 PDVLRQIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEK-----ASFDTIVASGWRGALPH  195 (361)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC-----CCCCEEECCCCCCCCCC
T ss_conf             8887567999999999999999999999999876599889999999999999829986-----66660303667774677


Q ss_pred             CCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCC-----HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             212222001340579978766530002311123334444321-----036778776543221100112122104899999
Q gi|254780899|r   88 GIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAA-----ERILQVTYESLYKGIAAVKLNANIEDIGKAIQR  162 (273)
Q Consensus        88 ~~p~d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~-----~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~  162 (273)
                      +.|+|++|++||+|++|+|+.|+||++|++|||++|.+...+     .++|+++++|++++++++|||+++++|++++++
T Consensus       196 ~~~s~r~i~~Gd~v~iD~G~~~~GY~sD~tRT~~ig~~~~~~~~~~l~~~y~~v~ea~~~~~~~~kpG~~~~evd~~~r~  275 (361)
T PRK09795        196 GKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAESHPLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARR  275 (361)
T ss_pred             CCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             88777351689989998758989785674699998897805766478999999999999999983699821068999999


Q ss_pred             HHHHCCCE-ECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECCCCCCEECCCCCEEEECCCCEEE
Q ss_conf             99862960-10475212332211354036531564545664511673788311144377762564688668833787167
Q gi|254780899|r  163 YAHSERYS-VVEVFCGHGIGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSA  241 (273)
Q Consensus       163 ~~~~~g~~-~~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~~~d~w~~~~~~g~~~~  241 (273)
                      +++++||+ .+.|++|||+|+++||.|.+.      .++..+|+|||||||||++|+++                 ..|+
T Consensus       276 ~i~~~G~~~~f~h~~GHgvGl~vhE~P~~~------~~~~~~L~~GMv~tvEPgiy~~g-----------------~gGv  332 (361)
T PRK09795        276 VITEAGYGDYFGHNTGHAIGIEVHEDPRFS------PRDTTTLQPGMLLTVEPGIYLPG-----------------QGGV  332 (361)
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCEECCCCEEEECCEEEECC-----------------CCEE
T ss_conf             999807886678984054888878898325------89998778997999899789769-----------------8489


Q ss_pred             EEEEEEEECCCCCEECCCCCCCCCCCC
Q ss_conf             844218984798576526798867688
Q gi|254780899|r  242 QYEHTIGITKAGCEIFTLSPNNLGQPG  268 (273)
Q Consensus       242 ~~Ed~vlVT~~G~E~LT~~p~~l~~~~  268 (273)
                      |+||+|+||+||+|+||++||+|.-.|
T Consensus       333 riEd~vlVT~~G~E~Lt~~pk~l~i~~  359 (361)
T PRK09795        333 RIEDVVLVTPQGAEVLYAMPKTVLLTG  359 (361)
T ss_pred             EEEEEEEECCCCCEECCCCCCEEEEEC
T ss_conf             988799992995468888994689944


No 11 
>PRK10879 proline aminopeptidase P II; Provisional
Probab=100.00  E-value=0  Score=406.48  Aligned_cols=242  Identities=22%  Similarity=0.296  Sum_probs=210.2

Q ss_pred             HHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33139788539999999999999999999999997579988999999999999985983034433244455323446421
Q gi|254780899|r    6 SRESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSINHVI   85 (273)
Q Consensus         6 ~~~~~~~~IKs~~EI~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~N~~~   85 (273)
                      +.....|.|||++||++||+|++|+++++.++++.++||++|.||++.++..+.++|+.     +.+|+.++++|.|+++
T Consensus       165 ~li~elR~IKs~~EI~~mr~A~~It~~a~~~~m~~~~pG~~E~ei~a~~~~~~~~~G~~-----~~ay~~Iva~G~na~~  239 (436)
T PRK10879        165 PWVHEMRLFKSPEEIAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGEIHHEFNRHGAR-----YPSYNTIVGSGENGCI  239 (436)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC-----CCCCCCEECCCCCCCC
T ss_conf             89999866799999999999999999999999853688873899999999999976898-----5774544237787756


Q ss_pred             CCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             1121222200134057997876653000231112333-444432103677877654322110011212210489999999
Q gi|254780899|r   86 CHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPV-GKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYA  164 (273)
Q Consensus        86 ~H~~p~d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~-G~~~~~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~  164 (273)
                      +||.++|++|++||+|++|+|+.|+||++|+||||.+ |+++++|+++|++++++|+++++++|||+++.||+.++.+++
T Consensus       240 lHy~~~~~~l~~gdlvliD~G~~~~gY~sDitRT~pv~Gkfs~~q~~iY~~vl~~q~~~i~~~kpGv~~~di~~~~~~~~  319 (436)
T PRK10879        240 LHYTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQREIYDIVLESLETSLRLYRPGTSIQEVTGEVVRIM  319 (436)
T ss_pred             CCCCCCCCCCCCCCEEEEECCCEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             67655544257777799823711687735753898858968899999999999999999998369996999999999999


Q ss_pred             HH------------------CCCE-ECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECCCCCCEE
Q ss_conf             86------------------2960-1047521233221135403653156454566451167378831114437776256
Q gi|254780899|r  165 HS------------------ERYS-VVEVFCGHGIGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKV  225 (273)
Q Consensus       165 ~~------------------~g~~-~~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~  225 (273)
                      .+                  ..+. .+.|.+||++||++||.|.+.      .+...+|+||||||||||||+....-  
T Consensus       320 ~~~l~~lg~~~~~~~~~~~~~~~~~~~~Hg~GH~lGldvHD~~~~~------~~~~~~L~~GmV~tiEPGiY~~~~~~--  391 (436)
T PRK10879        320 VSGLVKLGILKGDVDELIAENAHRPFFMHGLSHWLGLDVHDVGVYG------QDRSRILEPGMVLTVEPGLYIAPDAD--  391 (436)
T ss_pred             HHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCEEEECCEEEECCCCC--
T ss_conf             9999866876787899976234557778887766896777886557------88887479985899899776578778--


Q ss_pred             CCCCCEEEECCCCEEEEEEEEEEECCCCCEECCC-CCCCCCC
Q ss_conf             4688668833787167844218984798576526-7988676
Q gi|254780899|r  226 LSDGWTAVTRDRSLSAQYEHTIGITKAGCEIFTL-SPNNLGQ  266 (273)
Q Consensus       226 ~~d~w~~~~~~g~~~~~~Ed~vlVT~~G~E~LT~-~p~~l~~  266 (273)
                      .++      .-.++|+||||+|+||++|+|+||. .||++++
T Consensus       392 ~~~------~~~giGiRIEDdvliT~~G~e~Lt~~~pk~i~e  427 (436)
T PRK10879        392 VPE------QYRGIGIRIEDDIVITETGNENLTASVVKKPDE  427 (436)
T ss_pred             CCC------CCCCEEEEECCEEEECCCCCEECCCCCCCCHHH
T ss_conf             874------127348994207999899783236558999999


No 12 
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=100.00  E-value=0  Score=403.60  Aligned_cols=237  Identities=27%  Similarity=0.394  Sum_probs=219.6

Q ss_pred             CCCHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             77203313978853999999999999999999999999757998899999999999998598303443324445532344
Q gi|254780899|r    2 LSSSSRESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSI   81 (273)
Q Consensus         2 ~~~~~~~~~~~~IKs~~EI~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~   81 (273)
                      ++........|.|||+.||++||+|+++++.++..+.+.+++|+||.|+++.+...+.+.|+..     .+|+.++++|.
T Consensus       142 ~~~~~~i~~lR~iKs~~EI~~ir~A~~i~~~a~~~~~~~~~~G~tE~ev~a~l~~~~~~~G~~~-----~sf~~iva~G~  216 (384)
T COG0006         142 VDASDLVDRLRLIKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGAEG-----PSFDTIVASGE  216 (384)
T ss_pred             ECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-----CCCCCEEEECC
T ss_conf             5027789998855999999999999999999999999861079979999999999999808875-----77475787654


Q ss_pred             CCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf             64211121222200134057997876653000231112333444432103677877654322110011212210489999
Q gi|254780899|r   82 NHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQ  161 (273)
Q Consensus        82 N~~~~H~~p~d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~  161 (273)
                      |+++|||.|+++++++||+|++|+|+.|+||++|+||||++|+|+++|+++|+++++||+++++++|||+++++|+.+++
T Consensus       217 n~a~pH~~~~~~~~~~gd~vliD~G~~~~gY~sDiTRT~~~G~~s~~~~~iy~~V~~aq~aa~~~~~pG~~~~~vd~~ar  296 (384)
T COG0006         217 NAALPHYTPSDRKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREIYEAVLEAQEAAIAAIRPGVTGGEVDAAAR  296 (384)
T ss_pred             CCCCCCCCCCCCCCCCCCEEEEEECEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             33565678888766799989999460689811563568976999999999999999999999987279995999999999


Q ss_pred             HHHHHCCCE-ECCCCCCCCCC--CCCCCCCE-EEECCCCCCCCCCEECCCCEEEECCEEECCCCCCEECCCCCEEEECCC
Q ss_conf             999862960-10475212332--21135403-653156454566451167378831114437776256468866883378
Q gi|254780899|r  162 RYAHSERYS-VVEVFCGHGIG--KSFHEKPE-ILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDR  237 (273)
Q Consensus       162 ~~~~~~g~~-~~~~~~GHgiG--l~~hE~P~-i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~~~d~w~~~~~~g  237 (273)
                      +++++.||+ .+.|++|||+|  +++||.|. +      ..+...+|+|||||++||++|.+                 |
T Consensus       297 ~~i~~~g~~~~~~h~~GHgvG~~l~vhE~p~~~------~~~~~~~L~~GMv~t~Epg~y~~-----------------g  353 (384)
T COG0006         297 QVLEKAGYGLYFLHGTGHGVGFVLDVHEHPQYL------SPGSDTTLEPGMVFSIEPGIYIP-----------------G  353 (384)
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCEECCCEEEEECCCCCCC-----------------C
T ss_conf             999971467667787477578877555475435------78987330498299726556568-----------------8


Q ss_pred             CEEEEEEEEEEECCCCCEECCCCCCCCCC
Q ss_conf             71678442189847985765267988676
Q gi|254780899|r  238 SLSAQYEHTIGITKAGCEIFTLSPNNLGQ  266 (273)
Q Consensus       238 ~~~~~~Ed~vlVT~~G~E~LT~~p~~l~~  266 (273)
                      .+|+|+||+|+||++|+|+||.+|+++..
T Consensus       354 ~~GiRIEd~vlVte~G~e~LT~~~~~~~~  382 (384)
T COG0006         354 GGGVRIEDTVLVTEDGFEVLTRVPKELLV  382 (384)
T ss_pred             CCEEEEEEEEEECCCCCEECCCCHHHHHC
T ss_conf             63798777899858985677776266534


No 13 
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=100.00  E-value=0  Score=375.04  Aligned_cols=223  Identities=24%  Similarity=0.294  Sum_probs=194.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             99999999999999999999757998899999999999998598303443324445532344642111212222001340
Q gi|254780899|r   20 LENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSINHVICHGIPSNKQLREGD   99 (273)
Q Consensus        20 I~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~N~~~~H~~p~d~~l~~GD   99 (273)
                      |++||+|++|++++++++.+.++||+||.||++.+++.+.+.|+.++      |+.++++|.|++.+|+.|+|++|++||
T Consensus         1 Ie~mR~A~~i~~~~~~~~~~~i~pG~tE~el~~~~~~~~~~~G~~~~------~~~~~~~g~~~~~~H~~~~~r~l~~Gd   74 (243)
T cd01087           1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGARLA------YSYIVAAGSNAAILHYVHNDQPLKDGD   74 (243)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC------CCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             98999999999999999998764898799999999999998699658------898699817865358888984167999


Q ss_pred             EEEEEEEEEEEEECCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC---------
Q ss_conf             57997876653000231112333-44443210367787765432211001121221048999999986296---------
Q gi|254780899|r  100 IVNVDVTYVVNGWHGDSSRMYPV-GKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERY---------  169 (273)
Q Consensus       100 ~v~iD~g~~~~GY~~D~~RT~~~-G~~~~~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~g~---------  169 (273)
                      +|++|+|+.|+||++|++|||.+ |+|+++++++|++++++++++++++|||++++||++++++++.+.++         
T Consensus        75 ~v~vD~g~~~~GY~sD~~Rt~~v~G~~~~~~~~~~~~~~~a~~~~~~~~kPG~~~~ei~~~~~~~~~~~~~~~g~~~~~~  154 (243)
T cd01087          75 LVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDV  154 (243)
T ss_pred             EEEEEECEECCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf             99997240129785443017761896799999999999999999999837998599999999999999988659754658


Q ss_pred             ----------EECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECCCCCCEECCCCCEEEECCCCE
Q ss_conf             ----------0104752123322113540365315645456645116737883111443777625646886688337871
Q gi|254780899|r  170 ----------SVVEVFCGHGIGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSL  239 (273)
Q Consensus       170 ----------~~~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~~~d~w~~~~~~g~~  239 (273)
                                ..+.|++|||||+++||.|.....    .+.+.+|+|||||||||++|++......       .+..+..
T Consensus       155 ~~~~~~~~~~~~~~h~~GHgiGl~~He~~~~~~~----~~~~~~L~~GMv~aiEPgiy~~~~~~~~-------~~~~~~~  223 (243)
T cd01087         155 DEIVESGAYAKFFPHGLGHYLGLDVHDVGGYLRY----LRRARPLEPGMVITIEPGIYFIPDLLDV-------PEYFRGG  223 (243)
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEEECCEEEECCCCCCC-------CCCCCCC
T ss_conf             8887527864442577357667645778764566----8889785799889987979865755765-------5333500


Q ss_pred             EEEEEEEEEECCCCCEECCC
Q ss_conf             67844218984798576526
Q gi|254780899|r  240 SAQYEHTIGITKAGCEIFTL  259 (273)
Q Consensus       240 ~~~~Ed~vlVT~~G~E~LT~  259 (273)
                      |+|+||||+||+||||+||+
T Consensus       224 gvr~EdtvlVTedG~e~LTk  243 (243)
T cd01087         224 GIRIEDDVLVTEDGPENLTR  243 (243)
T ss_pred             EEEEEEEEEECCCCCEECCC
T ss_conf             89973499998995833889


No 14 
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=100.00  E-value=0  Score=367.64  Aligned_cols=226  Identities=16%  Similarity=0.162  Sum_probs=195.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9999999999999999999975799889999999999999859830-344332444553234464211121222200134
Q gi|254780899|r   20 LENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIP-ATLNYRGYKKSCCTSINHVICHGIPSNKQLREG   98 (273)
Q Consensus        20 I~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~-~~~~~~~f~~~~~~s~N~~~~H~~p~d~~l~~G   98 (273)
                      |++||+|++|++++|..+.+.++||+||.||+..+.+.+.+.++.. .+..+.+....+++|.|++.||+.|+||+|++|
T Consensus         1 I~liR~Aa~iad~~~~~~~~~i~~G~tE~eia~~~~~~~~~~~a~~~~~~~~~~~~~~~~sG~~~~~~H~~~s~r~l~~G   80 (228)
T cd01090           1 IALIRHGARIADIGGAAVVEAIREGVPEYEVALAGTQAMVREIAKTFPEVELMDTWTWFQSGINTDGAHNPVTNRKVQRG   80 (228)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             98999999999999999998734999699999999999998500116863113566630221477678899777674899


Q ss_pred             EEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCE-ECCCCCC
Q ss_conf             057997876653000231112333444432103677877654322110011212210489999999862960-1047521
Q gi|254780899|r   99 DIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYS-VVEVFCG  177 (273)
Q Consensus        99 D~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~g~~-~~~~~~G  177 (273)
                      |+|++|+|+.|+||++|++|||++|+|+++++++|+++++||+++++++|||++++||+++++++++++||. ..++.+|
T Consensus        81 d~v~iD~g~~~~GY~sd~~RT~~vG~~s~~~~~~~~~~~ea~~~a~~~ikPG~~~~dv~~~~~~~~~~~g~~~~~~~g~G  160 (228)
T cd01090          81 DILSLNCFPMIAGYYTALERTLFLDEVSDAHLKIWEANVAVHERGLELIKPGARCKDIAAELNEMYREHDLLRYRTFGYG  160 (228)
T ss_pred             CEEEEEEEEEECCEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             98999889999999847635897268999999999999999999999816998499999999999997498620465577


Q ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECCCCCCEECCCCCEEEECCCCEEEEEEEEEEECCCCCEEC
Q ss_conf             23322113540365315645456645116737883111443777625646886688337871678442189847985765
Q gi|254780899|r  178 HGIGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHTIGITKAGCEIF  257 (273)
Q Consensus       178 HgiGl~~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~~~d~w~~~~~~g~~~~~~Ed~vlVT~~G~E~L  257 (273)
                      ||+|+..|+.|.-... ....+++.+|+|||||||||++|++.+             .+|..|+|+||+|+||+||||+|
T Consensus       161 hgiG~~~h~~g~~~~~-~~~~~~~~vL~pGMV~tvEPgiy~~~~-------------~~G~gG~rieD~vvVTe~G~E~L  226 (228)
T cd01090         161 HSFGVLSHYYGREAGL-ELREDIDTVLEPGMVVSMEPMIMLPEG-------------QPGAGGYREHDILVINENGAENI  226 (228)
T ss_pred             CCCCCCCCCCCCCCCC-EECCCCCCEECCCCEEEECCEEEECCC-------------CCCCCEEEEEEEEEECCCCCCCC
T ss_conf             7068647788777775-313899978479998999998665776-------------88655899761799999942148


Q ss_pred             CC
Q ss_conf             26
Q gi|254780899|r  258 TL  259 (273)
Q Consensus       258 T~  259 (273)
                      |-
T Consensus       227 Tg  228 (228)
T cd01090         227 TG  228 (228)
T ss_pred             CC
T ss_conf             79


No 15 
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=100.00  E-value=0  Score=359.37  Aligned_cols=207  Identities=28%  Similarity=0.455  Sum_probs=193.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             99999999999999999999757998899999999999998598303443324445532344642111212222001340
Q gi|254780899|r   20 LENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSINHVICHGIPSNKQLREGD   99 (273)
Q Consensus        20 I~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~N~~~~H~~p~d~~l~~GD   99 (273)
                      |++||+|++|++++++++.+.++||+||.||++.+.+.+.+.|+..     .+|+.++++|.|.+.+|+.|++++|++||
T Consensus         1 Ie~mR~A~~i~~~~~~~~~~~i~pG~te~el~~~~~~~~~~~G~~~-----~~~~~~v~sG~~~~~~h~~~~~~~l~~Gd   75 (208)
T cd01092           1 IELLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAEG-----PSFDTIVASGPNSALPHGVPSDRKIEEGD   75 (208)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC-----CCCCCEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             9899999999999999999977489989999999999999869986-----89786899862214567899985356999


Q ss_pred             EEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCE-ECCCCCCC
Q ss_conf             57997876653000231112333444432103677877654322110011212210489999999862960-10475212
Q gi|254780899|r  100 IVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYS-VVEVFCGH  178 (273)
Q Consensus       100 ~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~g~~-~~~~~~GH  178 (273)
                      +|++|+|+.|+||++|++|||++|+|++++++++++++++++++++++|||++++||++++++++++.||. .+.|++||
T Consensus        76 ~v~iD~g~~~~gY~aD~~Rt~~vG~~~~~~~~~~~~~~~~~~~~i~~~kpG~~~~dv~~~~~~~~~~~g~~~~~~~~~GH  155 (208)
T cd01092          76 LVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEIVLEAQQAAIKAVKPGVTAKEVDKAARDVIEEAGYGEYFIHRTGH  155 (208)
T ss_pred             EEEEEEEECCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf             89998300549986303033348988999999999999999999972379990999999999999975987011037755


Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECCCCCCEECCCCCEEEECCCCEEEEEEEEEEECCCCC
Q ss_conf             3322113540365315645456645116737883111443777625646886688337871678442189847985
Q gi|254780899|r  179 GIGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHTIGITKAGC  254 (273)
Q Consensus       179 giGl~~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~~~d~w~~~~~~g~~~~~~Ed~vlVT~~G~  254 (273)
                      |+|+.+||.|.+.      ++++.+|+|||||+|||++|++                 |..|+|+||||+||+|||
T Consensus       156 giGl~~he~P~i~------~~~~~~l~~GMv~~iEP~i~~~-----------------g~~g~~iedtv~VT~~Gc  208 (208)
T cd01092         156 GVGLEVHEAPYIS------PGSDDVLEEGMVFTIEPGIYIP-----------------GKGGVRIEDDVLVTEDGC  208 (208)
T ss_pred             CCCCCCCCCCCCC------CCCCCCCCCCCEEEECCEEEEC-----------------CCCEEEEEEEEEECCCCC
T ss_conf             4466677687026------8989723899999988910658-----------------954799731699858999


No 16 
>PRK08671 methionine aminopeptidase; Provisional
Probab=100.00  E-value=0  Score=344.94  Aligned_cols=226  Identities=30%  Similarity=0.506  Sum_probs=204.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCC
Q ss_conf             999999999999999999997579988999999999999985983034433244455323446421112122---22001
Q gi|254780899|r   20 LENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSINHVICHGIPS---NKQLR   96 (273)
Q Consensus        20 I~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~N~~~~H~~p~---d~~l~   96 (273)
                      |+.+|+|++|+.++++.+.+.++||+|+.||+..+++++.+.|+.|+      ||  +|+|+|++++||+|.   +++|+
T Consensus         2 ~~kyr~Ag~I~~~vl~~~~~~~kpG~t~~el~~~~e~~i~~~ga~pA------FP--~~iSvN~~v~H~~P~~~d~~~lk   73 (293)
T PRK08671          2 LEKYREAGKIASKVREEAAKLIKPGASLLEVAEFVENRIRELGAKPA------FP--CNISINEVAAHYTPSPGDETVFP   73 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC------CC--CEECCCCEEECCCCCCCCCCCCC
T ss_conf             58999999999999999997676999099999999999997599477------77--62433468777899988661625


Q ss_pred             CCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEECCCCC
Q ss_conf             34057997876653000231112333444432103677877654322110011212210489999999862960104752
Q gi|254780899|r   97 EGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFC  176 (273)
Q Consensus        97 ~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~g~~~~~~~~  176 (273)
                      +||+|+||+|++++||++|.++|+.+|   ++.++|.+++++|++++|+++|||++.+||..+++++++++||.+++.++
T Consensus        74 ~GDiVkiD~g~~idG~~~d~a~T~~vg---~~~~~Li~aa~~al~~ai~~~kpG~~~~dIg~~I~~~~~~~g~~~v~~~~  150 (293)
T PRK08671         74 EGDVVKLDLGAHVDGYIADTAVTVDLG---GKYSDLVEASREALEAAIEIVKPGVSVGEIGRAIEETIKSYGFKPIRNLT  150 (293)
T ss_pred             CCCEEEEEEEEEECCEEEEEEEEEEEC---CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEECCCC
T ss_conf             899899978889899998888999979---61689999999999999987069979789999999999986988951444


Q ss_pred             CCCCCC-CCCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECCCCCCEECC----------------------------
Q ss_conf             123322-113540365315645456645116737883111443777625646----------------------------
Q gi|254780899|r  177 GHGIGK-SFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLS----------------------------  227 (273)
Q Consensus       177 GHgiGl-~~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~~~----------------------------  227 (273)
                      |||+|. .+|+.|.|+|++.   .....|++||||+|||+++.+...+.-.+                            
T Consensus       151 gHgigry~iH~~~~Ipn~~~---~~~~~l~~g~v~aIEpf~ttG~g~v~e~~~~tiy~~~~~~~~k~~~ar~~l~~I~~~  227 (293)
T PRK08671        151 GHGIERYDLHAGPSIPNYDE---GGGAVLKEGDVYAIEPFATDGEGQVVEGPEVEIYSLLRKRPVRLPAARKLLDKIEEE  227 (293)
T ss_pred             CCCCCCCCCCCCCEECCCCC---CCCCEECCCCEEEEEEEEECCCCEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf             46766515427987052069---987155078589994476278875876796148874276543467899999999865


Q ss_pred             -------CCC---------------------------EEEECCCCEEEEEEEEEEECCCCCEECCC
Q ss_conf             -------886---------------------------68833787167844218984798576526
Q gi|254780899|r  228 -------DGW---------------------------TAVTRDRSLSAQYEHTIGITKAGCEIFTL  259 (273)
Q Consensus       228 -------d~w---------------------------~~~~~~g~~~~~~Ed~vlVT~~G~E~LT~  259 (273)
                             +.|                           .++++||++.+||||||+||++|+|+||+
T Consensus       228 f~tlPFs~Rwl~~~~~~~~~~~~l~elv~~g~l~~Ypvl~ek~g~~vAQfehTvlVt~~G~evlTk  293 (293)
T PRK08671        228 YKTLPFAERWLAKLLDVDRLELALRRLLRAGALYGYPVLIEVSGGLVSQFEHTVIVTEDGCEVTTK  293 (293)
T ss_pred             CCCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCEEEEEEEEEEECCCCCEECCC
T ss_conf             589876224555113426789999999876984368822824998888988999999995678189


No 17 
>PRK13607 proline dipeptidase; Provisional
Probab=100.00  E-value=0  Score=347.49  Aligned_cols=246  Identities=17%  Similarity=0.152  Sum_probs=190.7

Q ss_pred             HCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             13978853999999999999999999999999757998899999999999998598303443324445532344642111
Q gi|254780899|r    8 ESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSINHVICH   87 (273)
Q Consensus         8 ~~~~~~IKs~~EI~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~N~~~~H   87 (273)
                      ....|.|||++||++||+|++|+++++.++++.++||++|.||...+...+. .|+..     .+|+.++++|.|++++|
T Consensus       155 l~e~R~iKs~~EI~~mr~A~~is~~ah~~~m~~~kpG~~E~ei~~~~~~~~~-~~~~~-----~~Y~~IVasG~na~~LH  228 (442)
T PRK13607        155 LHYHRAYKTDYELACMREAQKIAVAGHRAAKEAFRSGMSEFDINLAYLTATG-QRDND-----VPYGNIVALNEHAAVLH  228 (442)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-CCCCC-----CCCCCEEEECCCCCCCC
T ss_conf             9887668999999999999999999999999977477709999999999997-68867-----89873798378764467


Q ss_pred             CCCCC-CCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             21222-20013405799787665300023111233344443210367787765432211001121221048999999986
Q gi|254780899|r   88 GIPSN-KQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHS  166 (273)
Q Consensus        88 ~~p~d-~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~  166 (273)
                      |..+| +.++.++.|++|.||.|+||+||+||||.++. +.++.+++++++++|.++++++|||+++.+++.++.+++.+
T Consensus       229 Y~~~d~~~~~~~~~vLiDaGae~~gYaSDITRTfp~~~-~~~~~~l~~~v~~aq~~~i~~~kpG~~~~d~h~~a~~~i~~  307 (442)
T PRK13607        229 YTKLDHQAPAEMRSFLIDAGAEYNGYASDITRTYAAKE-DNDFAALIKAVNKEQLALIATMKPGVSYVDLHIQTHQRIAK  307 (442)
T ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCEEECCEEEEECCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             65456655677867999726231747714425630798-87899999999999999999817999756899999999999


Q ss_pred             ----CCC--------------E-ECCCCCCCCCCCCCCCCCEEEEC--CC--------CCCCCCCEECCCCEEEECCEEE
Q ss_conf             ----296--------------0-10475212332211354036531--56--------4545664511673788311144
Q gi|254780899|r  167 ----ERY--------------S-VVEVFCGHGIGKSFHEKPEILHF--YD--------PLYPSVGTFQEGMVFTIEPMLN  217 (273)
Q Consensus       167 ----~g~--------------~-~~~~~~GHgiGl~~hE~P~i~~~--~~--------~~~~~~~~le~GMV~aiEP~i~  217 (273)
                          .|.              . .+.|++||++||++|+-......  +.        +.-...++|+||||||||||||
T Consensus       308 ~L~~lgl~~~~~~~~~~~~~~~~f~~HglGH~lGLdVHDvg~~~~~~~g~~~~~~~~~~~lR~~r~L~~GmV~TVEPGiY  387 (442)
T PRK13607        308 LLRDFGIVTGSEEAMVEQGITSAFFPHGLGHPLGLQVHDVAGFMQDDRGTHLAAPEKHPYLRCTRVLEPGMVLTIEPGLY  387 (442)
T ss_pred             HHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEC
T ss_conf             99976966788899986665657668888756775312255424566677667754465433356489998898899205


Q ss_pred             CCCCCCEEC-------CCCCEEEECCCCE-EEEEEEEEEECCCCCEECCCC
Q ss_conf             377762564-------6886688337871-678442189847985765267
Q gi|254780899|r  218 VGGSSAKVL-------SDGWTAVTRDRSL-SAQYEHTIGITKAGCEIFTLS  260 (273)
Q Consensus       218 ~~~~~~~~~-------~d~w~~~~~~g~~-~~~~Ed~vlVT~~G~E~LT~~  260 (273)
                      +-..-...+       .-.|.++.+-..+ |+||||+||||++|+|+||+-
T Consensus       388 f~~~ll~~~~~~~~~~~~~~~~i~~~~~~GGIRIEDdvlVT~~G~enLT~d  438 (442)
T PRK13607        388 FIDSLLAPLREGPFSKHINWQKIDALKPFGGIRIEDNVVVHEDRVENMTRD  438 (442)
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEECCEEEECCCCCEECCCC
T ss_conf             272012200046211111134565417888797362799979978757713


No 18 
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=100.00  E-value=0  Score=340.49  Aligned_cols=226  Identities=28%  Similarity=0.396  Sum_probs=203.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCC
Q ss_conf             999999999999999999997579988999999999999985983034433244455323446421112122---22001
Q gi|254780899|r   20 LENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSINHVICHGIPS---NKQLR   96 (273)
Q Consensus        20 I~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~N~~~~H~~p~---d~~l~   96 (273)
                      |+.+|+|++|+.++++.+.+.++||+|..||+..+++++.+.|+.++      ||  +|.|+|++++||+|+   +++|+
T Consensus         1 l~kyr~Ag~i~~~vl~~~~~~~kpG~s~~el~~~~e~~i~~~~a~~a------FP--~~iSvN~~v~H~~P~~~d~~~lk   72 (291)
T cd01088           1 LEKYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGAGPA------FP--VNLSINECAAHYTPNAGDDTVLK   72 (291)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC------CC--CEECCCCEEECCCCCCCCCEEEC
T ss_conf             96899999999999999996676999599999999999998598067------78--62245467756889988754633


Q ss_pred             CCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEECCCCC
Q ss_conf             34057997876653000231112333444432103677877654322110011212210489999999862960104752
Q gi|254780899|r   97 EGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFC  176 (273)
Q Consensus        97 ~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~g~~~~~~~~  176 (273)
                      +||+|+||+|++++||++|.++|+.+|+   ...+|.+++++|++++|+.+|||++.+||..+++++++++||+++++++
T Consensus        73 ~GDiVkiD~G~~idG~~~D~A~Tv~v~~---~~~~Li~aa~~al~~ai~~~kpG~~~~dIg~~Ie~~~~~~g~~~v~~l~  149 (291)
T cd01088          73 EGDVVKLDFGAHVDGYIADSAFTVDFDP---KYDDLLEAAKEALNAAIKEAGPDVRLGEIGEAIEEVIESYGFKPIRNLT  149 (291)
T ss_pred             CCCEEEEEEEEEECCEEEEEEEEEECCC---CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEECCCC
T ss_conf             7998998665787788868889996383---1778999999999999998538989899999999999986977003652


Q ss_pred             CCCCCC-CCCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECCCCCCEE------------------------------
Q ss_conf             123322-1135403653156454566451167378831114437776256------------------------------
Q gi|254780899|r  177 GHGIGK-SFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKV------------------------------  225 (273)
Q Consensus       177 GHgiGl-~~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~------------------------------  225 (273)
                      |||+|. .+|+.|.|+|+...   ...+|++|||||||||++.|...+.-                              
T Consensus       150 GH~i~ry~ih~~~~Ipn~~~~---~~~~l~~g~v~aIEp~~t~G~g~v~~~~~~~iy~~~~~~~lk~~~~r~~l~~I~~~  226 (291)
T cd01088         150 GHSIERYRLHAGKSIPNVKGG---EGTRLEEGDVYAIEPFATTGKGYVHDGPECSIYMLNRDKPLRLPRARKLLDVIYEN  226 (291)
T ss_pred             CCCCCCCCCCCCCEECEECCC---CCCEECCCCEEEEEEEEECCCCEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf             557777221699753425289---98366068689985574058752633896158886255543207789999999862


Q ss_pred             -----CCCCC--------------------------EEEECCCCEEEEEEEEEEECCCCCEECCC
Q ss_conf             -----46886--------------------------68833787167844218984798576526
Q gi|254780899|r  226 -----LSDGW--------------------------TAVTRDRSLSAQYEHTIGITKAGCEIFTL  259 (273)
Q Consensus       226 -----~~d~w--------------------------~~~~~~g~~~~~~Ed~vlVT~~G~E~LT~  259 (273)
                           +...|                          .+++++|++.+||||||+||++|+|+||+
T Consensus       227 f~tlPFs~Rwl~~~~~~~~~~~l~el~~~g~l~~Ypvl~e~~g~~vAQfEhTvlvt~~G~~vlTk  291 (291)
T cd01088         227 FGTLPFARRWLDRLGETKLLMALKNLCKAGIVYPYPVLKEISGGYVAQFEHTIIVREDGKEVTTR  291 (291)
T ss_pred             CCCCEEEHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEEEEECCCCCEECCC
T ss_conf             49713100112211235789999999865974368714813998898888899998994577289


No 19 
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=100.00  E-value=0  Score=337.53  Aligned_cols=216  Identities=18%  Similarity=0.297  Sum_probs=193.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCC----CC
Q ss_conf             999999999999999999997579988999999999999985983---03443324445532344642111212----22
Q gi|254780899|r   20 LENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAI---PATLNYRGYKKSCCTSINHVICHGIP----SN   92 (273)
Q Consensus        20 I~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~---~~~~~~~~f~~~~~~s~N~~~~H~~p----~d   92 (273)
                      |++||+|++|++++++++.+.++||+|+.||+..+++++.++++.   +....+.+|+..+|+|+|+.++||+|    ++
T Consensus         1 IeKmR~Ag~i~a~~l~~~~~~i~pG~tt~eld~~~~~~i~~~~~~~~~~~~~~~~G~~~p~CiSvNe~v~HGiP~~~~~~   80 (228)
T cd01089           1 VTKYKTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEELGKVYKKEKKLEKGIAFPTCISVNNCVCHFSPLKSDAT   80 (228)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCEEECCCCCCCCCC
T ss_conf             97899999999999999995786999699999999999998304325676666677786727502544456899988887


Q ss_pred             CCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCC-----CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             200134057997876653000231112333444432-----103677877654322110011212210489999999862
Q gi|254780899|r   93 KQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRA-----AERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSE  167 (273)
Q Consensus        93 ~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~~-----~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~  167 (273)
                      ++|++||+|+||+|+.|+||++|.+|||.+|++++.     .++|++++++|++++++++|||++.+||..+++++++++
T Consensus        81 ~~L~~GDiV~iD~g~~~dGy~~D~a~T~~VG~~~~~~~~~~~~~L~~~t~~al~~gI~~~~pG~~~~dI~~ai~~~~~~~  160 (228)
T cd01089          81 YTLKDGDVVKIDLGCHIDGYIAVVAHTIVVGAEAETPVTGKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIVDY  160 (228)
T ss_pred             CCCCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
T ss_conf             35468998999776886877987569999489671023379999999999999999997079989689999999999984


Q ss_pred             CCEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECCCCCCEECCCCCEEEECCCCEEEEEEEEE
Q ss_conf             96010475212332211354036531564545664511673788311144377762564688668833787167844218
Q gi|254780899|r  168 RYSVVEVFCGHGIGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHTI  247 (273)
Q Consensus       168 g~~~~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~~~d~w~~~~~~g~~~~~~Ed~v  247 (273)
                      ||+.++.++||++|..+|+.|..+.       ....++.||++.++|+                 .++||++++||||||
T Consensus       161 g~~~v~~~~gH~~~~~~~~~~~~~~-------~~e~~~~~~~~~~~~~-----------------~~~dg~~~A~fEhTv  216 (228)
T cd01089         161 GCTPVEGVLSHQLKRVVSSGEGKAK-------LVECVKHGLLFPYPVL-----------------YEKEGEVVAQFKLTV  216 (228)
T ss_pred             CCEEEECCCCCCCCCCCCCCCCCCC-------CCCCCCCCEEEEEEEE-----------------ECCCCCEEEEEEEEE
T ss_conf             9967745205699981777999888-------5413546718888789-----------------857998887833799


Q ss_pred             EECCCCCEECCC
Q ss_conf             984798576526
Q gi|254780899|r  248 GITKAGCEIFTL  259 (273)
Q Consensus       248 lVT~~G~E~LT~  259 (273)
                      +||++|+|+||-
T Consensus       217 lVT~~G~eILTg  228 (228)
T cd01089         217 LLTPNGVTVLTG  228 (228)
T ss_pred             EECCCCCEECCC
T ss_conf             997998877389


No 20 
>pfam00557 Peptidase_M24 Metallopeptidase family M24. This family contains metallopeptidases. It also contains non-peptidase homologues such as the N terminal domain of Spt16 which is a histone H3-H4 binding module.
Probab=100.00  E-value=1.6e-43  Score=310.78  Aligned_cols=206  Identities=28%  Similarity=0.388  Sum_probs=183.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             99999999999999999997579988999999999999985983034433244455323446421112122220013405
Q gi|254780899|r   21 ENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSINHVICHGIPSNKQLREGDI  100 (273)
Q Consensus        21 ~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~N~~~~H~~p~d~~l~~GD~  100 (273)
                      ++||+|+++++++++++.+.++||+||.||++.+.+.+.+.++.    .+.+|+.++++|.|...+|+.|++++|++||+
T Consensus         1 ~~~r~A~~i~~~~~~~~~~~i~~G~te~ei~~~~~~~~~~~~g~----~~~~~~~~v~~g~~~~~~h~~~~~~~l~~Gd~   76 (207)
T pfam00557         1 ELMRKAARIAAAALEAALAAIRPGVTERELAAELEEAFLARGGA----RGPAFPPIVASGPNAAVPHYIPSDRVLKDGDL   76 (207)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC----CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCE
T ss_conf             98999999999999999997769998999999999999995799----88894876888733144268999750669998


Q ss_pred             EEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCC
Q ss_conf             79978766530002311123334444321036778776543221100112122104899999998629601047521233
Q gi|254780899|r  101 VNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGI  180 (273)
Q Consensus       101 v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~g~~~~~~~~GHgi  180 (273)
                      |++|+|+.|+||++|++|||++|+|+++++++|++++++++++++++|||++++||++++++.+++.||..+.+++|||+
T Consensus        77 v~~d~g~~~~gY~~d~~Rt~~~G~~~~~~~~~~~~~~~~~~~~~~~~rpG~~~~ev~~~~~~~~~~~g~~~~~~~~GHgi  156 (207)
T pfam00557        77 VLIDVGAEYDGYHSDITRTFVVGKPTPEQRELYEAVLEAQEAAIAAVKPGVTGGDVDAAAREVLEEGGYGVFPHGLGHGI  156 (207)
T ss_pred             EEEECCCEECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCEECCCC
T ss_conf             99962520798985304333289989999999999999999999863799889999999999999859998766102512


Q ss_pred             CCCCCCC-CEEEECCCCCCCCCCEECCCCEEEECCEEECCCCCCEECCCCCEEEECCCCEEEEEEEEEEECC
Q ss_conf             2211354-0365315645456645116737883111443777625646886688337871678442189847
Q gi|254780899|r  181 GKSFHEK-PEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHTIGITK  251 (273)
Q Consensus       181 Gl~~hE~-P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~~~d~w~~~~~~g~~~~~~Ed~vlVT~  251 (273)
                      |+.+||. |.+.+     .+++.+|++||||++||++|..                +|..++|+||||+||+
T Consensus       157 Gl~~~~~~P~~~~-----~~~~~~l~~GMv~~iep~~~~~----------------~g~~g~~iedtv~VT~  207 (207)
T pfam00557       157 GLDVHDEGPYIIS-----GGSDRVLEPGMVFTIEPGIYFI----------------PGWGGVRIEDTVLVTE  207 (207)
T ss_pred             CCCCCCCCCCCCC-----CCCCCEECCCCEEEECCEEEEC----------------CCCEEEEEEEEEEECC
T ss_conf             6677789864057-----9999897999899998961453----------------9966999866899769


No 21 
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=100.00  E-value=4.2e-43  Score=308.03  Aligned_cols=206  Identities=23%  Similarity=0.369  Sum_probs=189.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             99999999999999999999757998899999999999998598303443324445532344642111212222001340
Q gi|254780899|r   20 LENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSINHVICHGIPSNKQLREGD   99 (273)
Q Consensus        20 I~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~N~~~~H~~p~d~~l~~GD   99 (273)
                      |++||+|+++++++++++.+.++||+||.|+++.+.+.+.+.|+..      +|+.+++++.|..++|+.|++++|++||
T Consensus         1 i~~~r~a~~i~~~~~~~~~~~~~~G~te~ei~~~~~~~~~~~g~~~------~~~~~~~~g~~~~~~h~~~~~~~l~~gd   74 (207)
T cd01066           1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGGYP------AGPTIVGSGARTALPHYRPDDRRLQEGD   74 (207)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC------CCCEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             9899999999999999999977589989999999999999879988------8872888547445545799987868999


Q ss_pred             EEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCE-ECCCCCCC
Q ss_conf             57997876653000231112333444432103677877654322110011212210489999999862960-10475212
Q gi|254780899|r  100 IVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYS-VVEVFCGH  178 (273)
Q Consensus       100 ~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~g~~-~~~~~~GH  178 (273)
                      +|++|+++.|+||++|++|||++|++++++++++++++++++++++.+|||++++||+.++++++++.||. ...+++||
T Consensus        75 ~v~~D~g~~~~gY~~d~~Rt~~~G~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~i~~~~~~~~~~~g~~~~~~~~~GH  154 (207)
T cd01066          75 LVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVREAQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFGHRTGH  154 (207)
T ss_pred             EEEEEEEEEECCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEC
T ss_conf             89999768899995203545437986610021789999999999985079997999999999999982888512352243


Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECCCCCCEECCCCCEEEECCCCEEEEEEEEEEECCCCC
Q ss_conf             3322113540365315645456645116737883111443777625646886688337871678442189847985
Q gi|254780899|r  179 GIGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHTIGITKAGC  254 (273)
Q Consensus       179 giGl~~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~~~d~w~~~~~~g~~~~~~Ed~vlVT~~G~  254 (273)
                      ++|+.+||.|.+      ..+++.+|++||||+|||+++.+                 +..++|+||+|+||++|+
T Consensus       155 ~vG~~~~e~p~~------~~~~~~~l~~gmv~~iep~~~~~-----------------~~~g~~~ed~~~Vt~~G~  207 (207)
T cd01066         155 GIGLEIHEPPVL------KAGDDTVLEPGMVFAVEPGLYLP-----------------GGGGVRIEDTVLVTEDGP  207 (207)
T ss_pred             CCCCCCCCCCCC------CCCCCCEECCCCEEEECCEEEEC-----------------CCEEEEEEEEEEECCCCC
T ss_conf             278647789855------79999887899999999960768-----------------934899821799849999


No 22 
>cd01085 APP X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.
Probab=100.00  E-value=4.5e-42  Score=301.15  Aligned_cols=206  Identities=17%  Similarity=0.169  Sum_probs=171.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCC
Q ss_conf             99999999999999999975799--8899999999999998598303443324445532344642111212---222001
Q gi|254780899|r   22 NIRSACNVVARCLDSLTPIIKPG--TTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSINHVICHGIP---SNKQLR   96 (273)
Q Consensus        22 ~~R~A~~i~~~~~~~~~~~i~~G--~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~N~~~~H~~p---~d~~l~   96 (273)
                      ++|....++. .+..+.+.++.|  +||.|+++.++++..+..+..    ..+|++++++|.|+++|||.|   +|++|+
T Consensus         6 hi~D~~A~~~-~l~wl~~~~~~~~~~TE~~~a~~le~~r~~~~g~~----~~SF~tIva~G~naA~pHy~~~~~~~~~i~   80 (224)
T cd01085           6 HIRDGVALVE-FLAWLEQEVPKGETITELSAADKLEEFRRQQKGYV----GLSFDTISGFGPNGAIVHYSPTEESNRKIS   80 (224)
T ss_pred             HHHHHHHHHH-HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC----CCCHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9999999999-99999871125897379999999999998779987----878377984886520467788856673336


Q ss_pred             CCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHCCCEECCCC
Q ss_conf             34057997876653000231112333444432103677877654322110011-21221048999999986296010475
Q gi|254780899|r   97 EGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAVKL-NANIEDIGKAIQRYAHSERYSVVEVF  175 (273)
Q Consensus        97 ~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i~~ikp-G~~~~ei~~a~~~~~~~~g~~~~~~~  175 (273)
                      +||+|++|+|+.|+||++|+||||++|+|+++|+++|+++++++.++.++++| |+++.+++.++|+++++.|+. +.|.
T Consensus        81 ~gdlvLiD~G~~Y~gy~SDiTRT~~~G~~s~~~~~~Y~~Vl~a~~~~~~~~~p~g~~~~~lD~~aR~~l~~~G~~-y~Hg  159 (224)
T cd01085          81 PDGLYLIDSGGQYLDGTTDITRTVHLGEPTAEQKRDYTLVLKGHIALARAKFPKGTTGSQLDALARQPLWKAGLD-YGHG  159 (224)
T ss_pred             CCCEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC-CCCC
T ss_conf             898367727922516446655342069999999999999999999999998727985899999999999974988-8879


Q ss_pred             CCCCCC--CCCCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECCCCCCEECCCCCEEEECCCCEEEEEEEEEEECCCC
Q ss_conf             212332--211354036531564545664511673788311144377762564688668833787167844218984798
Q gi|254780899|r  176 CGHGIG--KSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHTIGITKAG  253 (273)
Q Consensus       176 ~GHgiG--l~~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~~~d~w~~~~~~g~~~~~~Ed~vlVT~~G  253 (273)
                      +|||||  |++||.|....    ...++.+|++|||||||||+|++                 |.+|+|+||+|+||+.+
T Consensus       160 tGHGiG~~L~vHE~P~~~~----~~~~~~~L~~Gmv~TiEPGiY~~-----------------g~~GiRIEd~v~Vt~~~  218 (224)
T cd01085         160 TGHGVGSFLNVHEGPQSIS----PAPNNVPLKAGMILSNEPGYYKE-----------------GKYGIRIENLVLVVEAE  218 (224)
T ss_pred             CCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCEEEECCEEEEC-----------------CCEEEECCCEEEEEECC
T ss_conf             9998899877779986667----78999662899799658984888-----------------97379770479999788


Q ss_pred             C
Q ss_conf             5
Q gi|254780899|r  254 C  254 (273)
Q Consensus       254 ~  254 (273)
                      -
T Consensus       219 ~  219 (224)
T cd01085         219 T  219 (224)
T ss_pred             C
T ss_conf             7


No 23 
>KOG2414 consensus
Probab=100.00  E-value=3.1e-42  Score=302.22  Aligned_cols=241  Identities=20%  Similarity=0.271  Sum_probs=209.9

Q ss_pred             HHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             03313978853999999999999999999999999757998899999999999998598303443324445532344642
Q gi|254780899|r    5 SSRESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSINHV   84 (273)
Q Consensus         5 ~~~~~~~~~IKs~~EI~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~N~~   84 (273)
                      ....++.|.||||.|+++||+||.|+.+++...+-.-|+...|..|.+.++..++.+|+.     +..||+.++.|.|+.
T Consensus       219 ~~li~~lRlIKSpaEl~~Mr~a~~I~sq~~~~~m~~sr~~~~E~~l~a~~eye~r~rGad-----~~AYpPVVAgG~na~  293 (488)
T KOG2414         219 SNLIERLRLIKSPAELELMREACNIASQTFSETMFGSRDFHNEAALSALLEYECRRRGAD-----RLAYPPVVAGGKNAN  293 (488)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEEECCCC-----CCCCCCEEECCCCCC
T ss_conf             999998770288899999999850425889999861468752566756410001335753-----103687441476652


Q ss_pred             CCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHCCCC--CCCCCHHHHHHH
Q ss_conf             11121222200134057997876653000231112333-444432103677877654322110011--212210489999
Q gi|254780899|r   85 ICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPV-GKIKRAAERILQVTYESLYKGIAAVKL--NANIEDIGKAIQ  161 (273)
Q Consensus        85 ~~H~~p~d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~-G~~~~~~~~l~~~~~~a~~~~i~~ikp--G~~~~ei~~a~~  161 (273)
                      ..||..+|..|+++|+|++|.||.++||++|++|||.+ |+.++.|++||++++..|+..|+.++|  |.+.++|+...-
T Consensus       294 tIHY~~Nnq~l~d~emVLvDaGcelgGYvSDITRTWP~sGkFs~~Qr~LYeavL~vq~ecik~c~~~~g~sL~~l~~~s~  373 (488)
T KOG2414         294 TIHYVRNNQLLKDDEMVLVDAGCELGGYVSDITRTWPISGKFSDAQRDLYEAVLQVQEECIKYCKPSNGTSLSQLFERSN  373 (488)
T ss_pred             EEEEEECCCCCCCCCEEEEECCCCCCCEECCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             68886245546788479994574458667144001678783270789999999999999998615889953999999999


Q ss_pred             HHH----HHCC------------CEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECCCCCCEE
Q ss_conf             999----8629------------601047521233221135403653156454566451167378831114437776256
Q gi|254780899|r  162 RYA----HSER------------YSVVEVFCGHGIGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKV  225 (273)
Q Consensus       162 ~~~----~~~g------------~~~~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~  225 (273)
                      +.+    .+-|            ....+|++||-+|+++|+-|.+        +.+..|+||||||||||+|++...   
T Consensus       374 ~Ll~~~Lk~lGI~kt~~ee~~~~~klcPHhVgHyLGmDVHD~p~v--------~r~~pL~pg~ViTIEPGvYIP~d~---  442 (488)
T KOG2414         374 ELLGQELKELGIRKTDREEMIQAEKLCPHHVGHYLGMDVHDCPTV--------SRDIPLQPGMVITIEPGVYIPEDD---  442 (488)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHCCCCCCCCCCC--------CCCCCCCCCCEEEECCCEECCCCC---
T ss_conf             999999998386541078887665308742210027643548888--------877658999659856850237657---


Q ss_pred             CCCCCEEEECCCCEEEEEEEEEEECCCCCEECCCC-CCCCCC
Q ss_conf             46886688337871678442189847985765267-988676
Q gi|254780899|r  226 LSDGWTAVTRDRSLSAQYEHTIGITKAGCEIFTLS-PNNLGQ  266 (273)
Q Consensus       226 ~~d~w~~~~~~g~~~~~~Ed~vlVT~~G~E~LT~~-p~~l~~  266 (273)
                           .....-.+.|+||||+|+|+|||+|+||.. ||++.+
T Consensus       443 -----d~P~~FrGIGiRIEDDV~i~edg~evLT~a~pKei~~  479 (488)
T KOG2414         443 -----DPPEEFRGIGIRIEDDVAIGEDGPEVLTAACPKEIIE  479 (488)
T ss_pred             -----CCCHHHCCCEEEEECCEEECCCCCEEEHHCCCCCHHH
T ss_conf             -----8766763744786422675268751540005678899


No 24 
>KOG2737 consensus
Probab=100.00  E-value=3.3e-41  Score=295.38  Aligned_cols=255  Identities=18%  Similarity=0.223  Sum_probs=206.4

Q ss_pred             HHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             313978853999999999999999999999999757998899999999999998598-3034433244455323446421
Q gi|254780899|r    7 RESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNA-IPATLNYRGYKKSCCTSINHVI   85 (273)
Q Consensus         7 ~~~~~~~IKs~~EI~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~-~~~~~~~~~f~~~~~~s~N~~~   85 (273)
                      .+..+|-|||+.||+.||.|++|.++++.++++.++||+.|.++.+.++.....+|+ +.     .+|..++|+|.|+++
T Consensus       178 ~m~E~RviKs~~EieviRya~kISseaH~~vM~~~~pg~~Eyq~eslF~hh~y~~GGcRh-----~sYtcIc~sG~ns~v  252 (492)
T KOG2737         178 ILAECRVIKSSLEIEVIRYANKISSEAHIEVMRAVRPGMKEYQLESLFLHHSYSYGGCRH-----LSYTCICASGDNSAV  252 (492)
T ss_pred             HHHHHEEECCHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC-----CCCCEEEECCCCCCE
T ss_conf             776662017799999999988606098999997479307677678888876541477011-----566405523887544


Q ss_pred             CCC----CCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf             112----1222200134057997876653000231112333-44443210367787765432211001121221048999
Q gi|254780899|r   86 CHG----IPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPV-GKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAI  160 (273)
Q Consensus        86 ~H~----~p~d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~-G~~~~~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~  160 (273)
                      .||    .|+|+.||+||++++|.|+.|++|.+|+|++|.. |+.+++|+.+|++++++++++++++|||+.+-|++...
T Consensus       253 LHYgha~apNd~~iqdgd~cLfDmGaey~~yaSDITcsFP~nGKFTadqk~VYnaVLda~navm~a~KpGv~W~Dmh~La  332 (492)
T KOG2737         253 LHYGHAGAPNDRTIQDGDLCLFDMGAEYHFYASDITCSFPVNGKFTADQKLVYNAVLDASNAVMEAMKPGVWWVDMHKLA  332 (492)
T ss_pred             EECCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf             43145689987636789789984684103330354152468986435689999999998899998528998654278887


Q ss_pred             HHHHHH----CC-------------CE--ECCCCCCCCCCCCCCCCCE-EEECCCCCC------CCCCEECCCCEEEECC
Q ss_conf             999986----29-------------60--1047521233221135403-653156454------5664511673788311
Q gi|254780899|r  161 QRYAHS----ER-------------YS--VVEVFCGHGIGKSFHEKPE-ILHFYDPLY------PSVGTFQEGMVFTIEP  214 (273)
Q Consensus       161 ~~~~~~----~g-------------~~--~~~~~~GHgiGl~~hE~P~-i~~~~~~~~------~~~~~le~GMV~aiEP  214 (273)
                      .+++-+    .|             .+  -.+|..||=+|+++|+-.- ..+...|..      ...+.|++|||+||||
T Consensus       333 ~kvlle~laq~gIl~gdvd~m~~ar~~~vF~PHGLGH~lGlDvHDvGGyp~~~~rp~~P~l~~LR~aR~L~e~MviTvEP  412 (492)
T KOG2737         333 EKVLLEHLAQMGILKGDVDEMVEARLGAVFMPHGLGHFLGLDVHDVGGYPEGVERPDEPGLRSLRTARHLKEGMVITVEP  412 (492)
T ss_pred             HHHHHHHHHHCCCEECCHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECC
T ss_conf             87999999864834234899998514706435663311254310257998889998860466654444530583798348


Q ss_pred             EEECCCCCCE-ECCCCCE-------EEE-CCCCEEEEEEEEEEECCCCCEECCCCCCCCCC
Q ss_conf             1443777625-6468866-------883-37871678442189847985765267988676
Q gi|254780899|r  215 MLNVGGSSAK-VLSDGWT-------AVT-RDRSLSAQYEHTIGITKAGCEIFTLSPNNLGQ  266 (273)
Q Consensus       215 ~i~~~~~~~~-~~~d~w~-------~~~-~~g~~~~~~Ed~vlVT~~G~E~LT~~p~~l~~  266 (273)
                      |+|+-.+-.. .+.|.-+       ++. --+.-||||||+|+||++|+|+||..|++.++
T Consensus       413 GcYFi~~Ll~ealadp~~~~f~n~e~~~rfr~~GGVRIEdDv~vt~~G~enlt~vprtvee  473 (492)
T KOG2737         413 GCYFIDFLLDEALADPARAEFLNREVLQRFRGFGGVRIEDDVVVTKSGIENLTCVPRTVEE  473 (492)
T ss_pred             CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCHHH
T ss_conf             7309999988885481765563299999864468667532479942651000379999999


No 25 
>TIGR00501 met_pdase_II methionine aminopeptidase, type II; InterPro: IPR002468   Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This group of metallopeptidases belong to MEROPS peptidase family M24 (clan MG), subfamily M24A.   Methionine aminopeptidase (3.4.11.18 from EC) (MAP) is responsible for the removal of the amino-terminal (initiator) methionine from nascent eukaryotic cytosolic and cytoplasmic prokaryotic proteins if the penultimate amino acid is small and uncharged. All MAP studied to date are monomeric proteins that require cobalt ions for activity. Two subfamilies of MAP enzymes are known to exist , . While being evolutionary related, they only share a limited amount of sequence similarity mostly clustered around the residues shown, in the Escherichia coli MAP , to be involved in cobalt-binding. The first family consists of enzymes from prokaryotes as well as eukaryotic MAP-1, while the second group (IPR002467 from INTERPRO) is made up of archaeal MAP and eukaryotic MAP-2 and includes proteins which do not seem to be MAP, but that are clearly evolutionary related such as mouse proliferation-associated protein 1 and fission yeast curved DNA-binding protein. ; GO: 0004239 methionyl aminopeptidase activity, 0006508 proteolysis.
Probab=100.00  E-value=4.7e-38  Score=274.30  Aligned_cols=236  Identities=24%  Similarity=0.383  Sum_probs=201.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC-CCC-------CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999999999999999997579988999999999999985-983-------0344332444553234464211121
Q gi|254780899|r   18 EELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMEN-NAI-------PATLNYRGYKKSCCTSINHVICHGI   89 (273)
Q Consensus        18 ~EI~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~-g~~-------~~~~~~~~f~~~~~~s~N~~~~H~~   89 (273)
                      +.+.-+|+.++|..++-+++.+.|+||+.-.||+.+++..+++. |+.       |...| .+||.  ..|+|++.+||.
T Consensus         6 E~~nD~~aGakI~~~vr~ea~~~I~PG~klleva~fvEnri~e~tGa~nllameDPksqG-iAFP~--n~S~N~~AAHfT   82 (327)
T TIGR00501         6 EKLNDIEAGAKIVSKVRREAADRIVPGVKLLEVAEFVENRIRELTGAENLLAMEDPKSQG-IAFPC--NISINEVAAHFT   82 (327)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCC-CCCCC--CCCHHCCCCCCC
T ss_conf             446777744799999999998526788612122121210121220641001103863255-22556--751213010168


Q ss_pred             C---CCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             2---2220013405799787665300023111233344443210367787765432211001121221048999999986
Q gi|254780899|r   90 P---SNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHS  166 (273)
Q Consensus        90 p---~d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~  166 (273)
                      |   .++.|++||+|++|+|++++||.+|.+-|+-+|+.+++..+|.+|+++|+.++|+.+++|+..+||..++++++++
T Consensus        83 p~~gD~~~~k~~DvvKlD~GahvdGyIaD~A~TV~l~~~ddky~~L~~A~~dAl~~~i~~~~~~v~v~eiG~~I~e~i~s  162 (327)
T TIGR00501        83 PKAGDETVFKDGDVVKLDLGAHVDGYIADTAITVDLGDQDDKYKELVKAAKDALYTAIKEIRAGVEVGEIGKAIEEVIES  162 (327)
T ss_pred             CCCCCCCCCCCCCEEEEEECCEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHCC
T ss_conf             68888631277876887522066557870478850688701589999999999887775006981260020776653221


Q ss_pred             ---------CCCEECCCCCCCCCCCC-CCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECCCCCCEECC---------
Q ss_conf             ---------29601047521233221-13540365315645456645116737883111443777625646---------
Q gi|254780899|r  167 ---------ERYSVVEVFCGHGIGKS-FHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLS---------  227 (273)
Q Consensus       167 ---------~g~~~~~~~~GHgiGl~-~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~~~---------  227 (273)
                               +||+++.++|||+|-.. +|-++.|++...   ++...|++||+||||||-+.|.+.+.--.         
T Consensus       163 yeveinGetYg~kP~~NL~GHs~~rY~~H~G~SiPn~~~---~~~~~leeG~~~AIEpFAt~G~G~V~~~~~~~iY~~l~  239 (327)
T TIGR00501       163 YEVEINGETYGVKPISNLTGHSMARYLLHAGLSIPNVKE---RDTTKLEEGDVVAIEPFATDGVGLVTDGGEVEIYKFLA  239 (327)
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEC---CCCCEEECCCEEEECCCCCCCEEEEECCCCCHHHHHHC
T ss_conf             357765720143342227356400154358950003427---98745102578884366768745651288610122105


Q ss_pred             -------------------------------------------------------CCCEEEE-CCCCEEEEEEEEEEECC
Q ss_conf             -------------------------------------------------------8866883-37871678442189847
Q gi|254780899|r  228 -------------------------------------------------------DGWTAVT-RDRSLSAQYEHTIGITK  251 (273)
Q Consensus       228 -------------------------------------------------------d~w~~~~-~~g~~~~~~Ed~vlVT~  251 (273)
                                                                             .++.++. ..|++.+||||||+|++
T Consensus       240 ~DrpvrPtL~~Ar~lL~~i~~nY~~LPFA~RwL~~~~~~Kr~~~~l~~L~r~~~~~~YPvL~e~~G~~vaQ~EHTilv~~  319 (327)
T TIGR00501       240 EDRPVRPTLKSARKLLKKIEENYKTLPFAKRWLEKLEDEKRLRLALNKLIREGVIYDYPVLKEKSGGLVAQWEHTILVEE  319 (327)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEEC
T ss_conf             68896733589999876786640788247889752333026899999988733334788752478874523245889964


Q ss_pred             CCCEECCC
Q ss_conf             98576526
Q gi|254780899|r  252 AGCEIFTL  259 (273)
Q Consensus       252 ~G~E~LT~  259 (273)
                      +|+|+.|+
T Consensus       320 ~g~~v~tk  327 (327)
T TIGR00501       320 DGVEVTTK  327 (327)
T ss_pred             CCEEEEEC
T ss_conf             83468509


No 26 
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=100.00  E-value=2.7e-37  Score=269.25  Aligned_cols=225  Identities=17%  Similarity=0.207  Sum_probs=181.9

Q ss_pred             HHHHHHHHHHHHHHHHH-----HHHHCCCC--CCHHHHHHHHHHHHHHCC-----CCCCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf             99999999999999999-----99975799--889999999999999859-----83034433244455323446-4211
Q gi|254780899|r   20 LENIRSACNVVARCLDS-----LTPIIKPG--TTTEEIDDFVLKFGMENN-----AIPATLNYRGYKKSCCTSIN-HVIC   86 (273)
Q Consensus        20 I~~~R~A~~i~~~~~~~-----~~~~i~~G--~se~el~~~~~~~~~~~g-----~~~~~~~~~~f~~~~~~s~N-~~~~   86 (273)
                      |..||+|++++..+|..     +...+-.+  +|-..|...++..+....     ..+... -..|++++.+|-| +..+
T Consensus         1 l~~ik~as~~s~~~~~~~~~~~~~~iiD~e~k~~h~~l~~~~e~~i~d~kk~~~~~d~~~v-d~~Y~PIVqSGg~y~~~~   79 (243)
T cd01091           1 LNNIKKASDATVDVLKKFFVDEVEEIIDQEKKVTHSKLSDKVEKAIEDKKKYKAKLDPEQL-DWCYPPIIQSGGNYDLLK   79 (243)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCHHCCCCCCHHHC-CEECCCCEEECCCCCCCC
T ss_conf             9378999999999999999999998840121213999999999986270220378997887-532456414887623575


Q ss_pred             CCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             12122220013405799787665300023111233344443210367787765432211001121221048999999986
Q gi|254780899|r   87 HGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHS  166 (273)
Q Consensus        87 H~~p~d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~  166 (273)
                      |..++|+.+..+++|++|+|+.|+|||||++|||++ +|+++|+++|+.++++|+++++++|||+++++|+.++++++++
T Consensus        80 ~~~~~d~~~~~~g~Il~d~G~rYk~YcSditRT~~v-~pt~~q~~~Y~~vl~aq~~~i~~~kpG~~~~~v~~~a~~~I~~  158 (243)
T cd01091          80 SSSSSDKLLYHFGVIICSLGARYKSYCSNIARTFLI-DPTSEQQKNYNFLLALQEEILKELKPGAKLSDVYQKTLDYIKK  158 (243)
T ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCEECCCEEEEEE-CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             778875423779989998691357780265658985-7999999999999999999999972699689999999999998


Q ss_pred             CC--CE-ECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCEEEECCEEE-CCCCCCEECCCCCEEEECCCCEEEE
Q ss_conf             29--60-10475212332211354036531564545664511673788311144-3777625646886688337871678
Q gi|254780899|r  167 ER--YS-VVEVFCGHGIGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLN-VGGSSAKVLSDGWTAVTRDRSLSAQ  242 (273)
Q Consensus       167 ~g--~~-~~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~-~~~~~~~~~~d~w~~~~~~g~~~~~  242 (273)
                      .+  |. .+.|.+|||+|+++||.|.+.+     ..++.+|++||||+|+||++ +.....        .....+.++++
T Consensus       159 ~~~~l~~~f~h~~GhgiGlE~hE~~~~l~-----~kn~~~lk~GMvftV~~Gf~nl~~~~~--------~~~~~k~yal~  225 (243)
T cd01091         159 KKPELEPNFTKNLGFGIGLEFRESSLIIN-----AKNDRKLKKGMVFNLSIGFSNLQNPEP--------KDKESKTYALL  225 (243)
T ss_pred             HHHHHHHHCCCCCCCEECEEECCCCCCCC-----CCCCEECCCCCEEEEECCEEECCCCCC--------CCCCCCEEEEE
T ss_conf             77888725766762322557524665448-----997404179978999655055568766--------67667736999


Q ss_pred             EEEEEEECCCCC-EECCC
Q ss_conf             442189847985-76526
Q gi|254780899|r  243 YEHTIGITKAGC-EIFTL  259 (273)
Q Consensus       243 ~Ed~vlVT~~G~-E~LT~  259 (273)
                      ++|||+||++|+ .+||.
T Consensus       226 I~DtV~Vte~gp~~vlT~  243 (243)
T cd01091         226 LSDTILVTEDEPAIVLTN  243 (243)
T ss_pred             EEEEEEECCCCCCEECCC
T ss_conf             964899858998064379


No 27 
>PTZ00053 methionine aminopeptidase II; Provisional
Probab=100.00  E-value=2.2e-34  Score=249.84  Aligned_cols=239  Identities=23%  Similarity=0.293  Sum_probs=192.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CC
Q ss_conf             999999999999999999999999757998899999999999998598303443324445532344642111212---22
Q gi|254780899|r   16 TPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSINHVICHGIP---SN   92 (273)
Q Consensus        16 s~~EI~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~N~~~~H~~p---~d   92 (273)
                      ..+-+.-+|+|+++..++-+.+...|||||+..||+..++...+..-.......-.+||  +|.|+|++++||.|   .+
T Consensus       118 ~~~~~~~~r~aae~hr~vr~~~q~~ikpg~~~~~i~~~ie~~~r~l~~~~~l~~GiAFP--t~iSiN~~AAHYTPn~gD~  195 (435)
T PTZ00053        118 SEQQYQDLRKAAEVHRQVRRYAQSFIKPGISLIDMTDRIEKKTKELIEKDGLKRGWAFP--TGCSLNHCAAHYTPNTGDK  195 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCCCEEEECCCCCCCC
T ss_conf             48999999999999999999999865799829999999999999985245612450046--6454101013158898986


Q ss_pred             CCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC-----
Q ss_conf             200134057997876653000231112333444432103677877654322110011212210489999999862-----
Q gi|254780899|r   93 KQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSE-----  167 (273)
Q Consensus        93 ~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~-----  167 (273)
                      ++|+.||+|+||+|++++||.+|.+.|+.++   +....|.+++++|.+++++.++||++.+||.++++++++++     
T Consensus       196 ~vL~~gDVVKID~GvHVDGyIaDsAfTV~f~---~kyd~Ll~A~keAt~taIk~agidvrl~eIG~aIqEvieSyevei~  272 (435)
T PTZ00053        196 TVLTYDDVMKVDFGTHVNGRIIDCAFTVAFN---EKYDPLLEATKEATNEGIKQAGIDARLCDIGEAIQEVIESYEVELN  272 (435)
T ss_pred             EEECCCCEEEEEEEEEECCEEEEEEEEEECC---CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEEC
T ss_conf             1742799899974111363799789998758---7537899999999999999851686188899999999975234433


Q ss_pred             ----CCEECCCCCCCCCCCC-CCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECCCCCCEECC---------C-----
Q ss_conf             ----9601047521233221-13540365315645456645116737883111443777625646---------8-----
Q gi|254780899|r  168 ----RYSVVEVFCGHGIGKS-FHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLS---------D-----  228 (273)
Q Consensus       168 ----g~~~~~~~~GHgiGl~-~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~~~---------d-----  228 (273)
                          ++..+++.+||+|+.. +|..+.|++....  +....||+|+||||||+.+.|.+.+.-..         +     
T Consensus       273 gk~y~vKPI~NL~GH~I~~Y~IHggksIP~v~~~--~~~k~mEEGEVyAIEtF~STG~G~V~e~~~~s~Y~~~~~~~~~~  350 (435)
T PTZ00053        273 GKVYPVKSIRNLTGHNIGPYIIHSGKSVPIVRGG--EATKIMEEGELFAIETFASTGRGFVNEDMECSHYMMNPGAEYVP  350 (435)
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCC--CCCCCCCCCCEEEEEEEECCCCCEEECCCCEEEEEECCCCCCCC
T ss_conf             6331674046777665302351168553211688--65622368966999666227864574388515999777877565


Q ss_pred             ------------------------CC-------------------------E-EEECCCCEEEEEEEEEEECCCCCEECC
Q ss_conf             ------------------------86-------------------------6-883378716784421898479857652
Q gi|254780899|r  229 ------------------------GW-------------------------T-AVTRDRSLSAQYEHTIGITKAGCEIFT  258 (273)
Q Consensus       229 ------------------------~w-------------------------~-~~~~~g~~~~~~Ed~vlVT~~G~E~LT  258 (273)
                                              .|                         . ++...|++.+|+||||++++++.|+||
T Consensus       351 lrl~~aR~lL~~I~~nF~TLPF~~RwLd~~~~~r~~l~L~~Lv~~GiV~~YPpL~d~~G~yVAQfEHTIlL~p~~kEVis  430 (435)
T PTZ00053        351 LRLESAQELLKHINKTFSTLAFCRRWLDDDGFDRHLMNLNQLVDAGAVNPYPPLCDVKGSYTSQMEHTILLRPTCKEVLS  430 (435)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEC
T ss_conf             66789999999999877988764777754231268999999987798523896072699988775559998799607607


Q ss_pred             CCC
Q ss_conf             679
Q gi|254780899|r  259 LSP  261 (273)
Q Consensus       259 ~~p  261 (273)
                      +-.
T Consensus       431 rgd  433 (435)
T PTZ00053        431 RGD  433 (435)
T ss_pred             CCC
T ss_conf             889


No 28 
>TIGR00495 crvDNA_42K DNA-binding protein, 42 kDa; InterPro: IPR004545   Proteins of this family have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. The proteins are closely related to methionine aminopeptidase, a cobalt-binding protein.   This group sequences are classified as non-peptidase homologues in MEROPS peptidase family M24 (clan MG). .
Probab=99.96  E-value=5.4e-29  Score=213.86  Aligned_cols=265  Identities=18%  Similarity=0.264  Sum_probs=219.2

Q ss_pred             CCCCHHHHCCCE--EECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC---CCCC-CCCCCC
Q ss_conf             977203313978--8539999999999999999999999997579988999999999999985983---0344-332444
Q gi|254780899|r    1 MLSSSSRESGSI--NIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAI---PATL-NYRGYK   74 (273)
Q Consensus         1 ~~~~~~~~~~~~--~IKs~~EI~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~---~~~~-~~~~f~   74 (273)
                      |...+++.+...  ++-+|.-+..++.|+.|+..+++.+.+.+.||+.-.+|+....+++.+.-+.   .+-. -++|--
T Consensus         1 Ms~~ee~~e~~~dy~Ls~P~vV~kYk~AG~i~n~vlk~vv~~c~~ga~v~diC~~GD~~i~e~~~k~y~~s~K~~~kGiA   80 (407)
T TIGR00495         1 MSTKEEASEKAVDYSLSNPEVVTKYKIAGEIANNVLKKVVEKCKPGAKVVDICEKGDEFIEEETAKVYKKSKKELEKGIA   80 (407)
T ss_pred             CCCCCCCCHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             98520022133210157883121022346899999999998607984899602200589999987541023000115732


Q ss_pred             CCCCCCCCCCCCCCCC----C---CCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCC-----CCCCCHHHHHHHHHHHHH
Q ss_conf             5532344642111212----2---220013405799787665300023111233344-----443210367787765432
Q gi|254780899|r   75 KSCCTSINHVICHGIP----S---NKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGK-----IKRAAERILQVTYESLYK  142 (273)
Q Consensus        75 ~~~~~s~N~~~~H~~p----~---d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~-----~~~~~~~l~~~~~~a~~~  142 (273)
                      +++|+|+|++++|..|    .   |+.|+.||+|+||+|||+|||.+-.+.|+++|.     .+.+..+...|+..|+++
T Consensus        81 FPT~vSvNn~vgHfSPLkSd~eand~~Lk~GD~VKIdLG~HiDGFiA~vAhT~vig~~~~~~~tG~~ADvI~AA~~Al~a  160 (407)
T TIGR00495        81 FPTCVSVNNCVGHFSPLKSDEEANDLVLKEGDVVKIDLGCHIDGFIALVAHTIVIGVASEEPVTGRKADVIAAAHLALEA  160 (407)
T ss_pred             CCCCCCCCCCHHHCCCCCCCCCHHHHHHHCCCEEEEECCCCEEEEEECCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             47641703603326887888313344533387479813664403564150789985145876557067899999999998


Q ss_pred             HHHCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCC-EEEECCCCC---CCCCCEECCCCEEEECCEEEC
Q ss_conf             2110011212210489999999862960104752123322113540-365315645---456645116737883111443
Q gi|254780899|r  143 GIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSFHEKP-EILHFYDPL---YPSVGTFQEGMVFTIEPMLNV  218 (273)
Q Consensus       143 ~i~~ikpG~~~~ei~~a~~~~~~~~g~~~~~~~~GHgiGl~~hE~P-~i~~~~~~~---~~~~~~le~GMV~aiEP~i~~  218 (273)
                      |+..+|||++..+|.++++++...+|+..+..-+.|.+-..+.++- .|...+++.   .-+...||+|.||+|+..+..
T Consensus       161 AlRlvkPG~~n~~VT~~~~KvA~~Y~c~~v~G~LSHqlkr~vIDG~K~v~~~~~d~Q~~~~~~~eFee~EVYavDil~St  240 (407)
T TIGR00495       161 ALRLVKPGKTNTQVTEAIEKVADSYGCKPVEGMLSHQLKRHVIDGEKVVISNPSDSQKKEVDTVEFEENEVYAVDILVST  240 (407)
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECCCCEEEECCCCCCCCCCCEEEEEECCEEEEEEEEEC
T ss_conf             87404887987147889999973249846532231022224866722797368820001122266420118899999973


Q ss_pred             C-CCCCEECCCC--------------------------------------------------------------CEEEE-
Q ss_conf             7-7762564688--------------------------------------------------------------66883-
Q gi|254780899|r  219 G-GSSAKVLSDG--------------------------------------------------------------WTAVT-  234 (273)
Q Consensus       219 ~-~~~~~~~~d~--------------------------------------------------------------w~~~~-  234 (273)
                      + ++.....++.                                                              +.|++ 
T Consensus       241 gP~GK~k~~~~~qttIYkk~~d~~Y~LK~kASR~~~sei~~~F~~~PF~~R~~~~ek~a~lGlvEc~~H~~L~pY~VLyd  320 (407)
T TIGR00495       241 GPEGKAKEEDERQTTIYKKDEDSTYKLKMKASRKFYSEIKKRFSAMPFTLRNFEFEKRARLGLVECVEHKLLQPYPVLYD  320 (407)
T ss_pred             CCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf             88975442014688543128886635355520356556752277868761456600000266345503771266243122


Q ss_pred             CCCCEEEEEEEEEEECCCCCEECCCCCCCCC
Q ss_conf             3787167844218984798576526798867
Q gi|254780899|r  235 RDRSLSAQYEHTIGITKAGCEIFTLSPNNLG  265 (273)
Q Consensus       235 ~~g~~~~~~Ed~vlVT~~G~E~LT~~p~~l~  265 (273)
                      ++|.+.+||--|||++++|...||..+-.++
T Consensus       321 k~G~~Vaqfk~Tvll~pnG~~~l~~~~~~~~  351 (407)
T TIGR00495       321 KDGEFVAQFKFTVLLMPNGSIRLTSSEFKED  351 (407)
T ss_pred             CCCCEEEEEEEEEEECCCCCEEECCCCCCCC
T ss_conf             7998899888788853798654348888855


No 29 
>TIGR02993 ectoine_eutD ectoine utilization protein EutD; InterPro: IPR014335   Members of this entry are putative peptidases, or non-peptidase homologues that belong to the MEROPS peptidase family M24 (clan MG) or hydrolases similar to Xaa-Pro aminopeptidase. They belong to ectoine utilisation operons, as found in Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, Pseudomonas putida and Sinorhizobium meliloti 1021, where it is known to be induced by ectoine. The exact function is unknown..
Probab=99.96  E-value=1.1e-28  Score=211.75  Aligned_cols=239  Identities=19%  Similarity=0.198  Sum_probs=205.1

Q ss_pred             CCCHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCC---
Q ss_conf             772033139788539999999999999999999999997579988999999999999985983034433-2444553---
Q gi|254780899|r    2 LSSSSRESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNY-RGYKKSC---   77 (273)
Q Consensus         2 ~~~~~~~~~~~~IKs~~EI~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~-~~f~~~~---   77 (273)
                      .++....+=.|.|||+.||++||+|++|++.+++.+.+.+.+||...+|.+.+.........     ++ ..||.++   
T Consensus       146 ~~a~~lvnWqravks~~e~~ymr~a~~ive~mh~ri~~~~e~Gmrk~~lva~iy~~G~~~~~-----~~GGdyPaivPll  220 (391)
T TIGR02993       146 KDATALVNWQRAVKSETELKYMRKAAKIVEKMHQRILERVEPGMRKCDLVADIYDAGIRGVD-----GFGGDYPAIVPLL  220 (391)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC-----CCCCCCCCCEECC
T ss_conf             34567676676513378899999889999999988887630252046789998751011012-----3578664100025


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf             23446421112122220013405799787665300023111233344443210367787765432211001121221048
Q gi|254780899|r   78 CTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIG  157 (273)
Q Consensus        78 ~~s~N~~~~H~~p~d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~  157 (273)
                      .+|.++..||..+.|++++.|+--++++.+.|+.||+.++||+++|+|+....+.-+++.+.+++++++.|||+++.||.
T Consensus       221 P~G~~a~aPhltWdd~P~~~G~GtffeiaG~~~ryh~PlsrtvflGkP~q~fld~eka~~eG~~aGl~~a~~Gnt~~dia  300 (391)
T TIGR02993       221 PSGADASAPHLTWDDKPLKVGEGTFFEIAGVYKRYHCPLSRTVFLGKPTQAFLDAEKAVLEGMEAGLEAAKPGNTCEDIA  300 (391)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             67743146533226762204785201010112221465200466158603444123677887899898512787478999


Q ss_pred             HHHHHHHHHCCCEECCCCCCCCCCCCCCCCCEEEEC-CCCCCCCCCEECCCCEEEECCEEECCCCCCEECCCCCEEEECC
Q ss_conf             999999986296010475212332211354036531-5645456645116737883111443777625646886688337
Q gi|254780899|r  158 KAIQRYAHSERYSVVEVFCGHGIGKSFHEKPEILHF-YDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRD  236 (273)
Q Consensus       158 ~a~~~~~~~~g~~~~~~~~GHgiGl~~hE~P~i~~~-~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~~~d~w~~~~~~  236 (273)
                      .+.-.++++++.. -..++|+.||++.  +|.|... -+..+++...|++||+|.+-+++++...|..            
T Consensus       301 ~~ff~vl~~y~i~-kd~r~GyPiG~sy--PPdWGertmslrP~d~~~l~~~mtfhfm~GlW~~d~G~e------------  365 (391)
T TIGR02993       301 KAFFAVLKKYGIE-KDSRTGYPIGLSY--PPDWGERTMSLRPGDKTVLKPGMTFHFMTGLWLEDMGLE------------  365 (391)
T ss_pred             HHHHHHHHHHCCC-CCCCCCCCEECCC--CCCCCCCEEEECCCCCCHHCCCCEEEEECCCCHHHCCCC------------
T ss_conf             9999999860640-0365665111136--887465203325775210024650442134201003642------------


Q ss_pred             CCEEEEEEEEEEECCCCCEECCCCCCCCCC
Q ss_conf             871678442189847985765267988676
Q gi|254780899|r  237 RSLSAQYEHTIGITKAGCEIFTLSPNNLGQ  266 (273)
Q Consensus       237 g~~~~~~Ed~vlVT~~G~E~LT~~p~~l~~  266 (273)
                            +-+.|.||++|.|.|+..||.|+-
T Consensus       366 ------~tesi~i~~~G~e~l~~~Pr~l~v  389 (391)
T TIGR02993       366 ------ITESILITETGVECLSSVPRKLFV  389 (391)
T ss_pred             ------EEEEEEECCCCCHHHHCCCCEEEE
T ss_conf             ------000134303340445407720131


No 30 
>KOG2413 consensus
Probab=99.95  E-value=9.4e-28  Score=205.55  Aligned_cols=233  Identities=21%  Similarity=0.252  Sum_probs=182.3

Q ss_pred             HHHCCCEEECCHHHHHHHHHHHHHHHH-HHHH----HHHHCCCC--CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             331397885399999999999999999-9999----99975799--8899999999999998598303443324445532
Q gi|254780899|r    6 SRESGSINIYTPEELENIRSACNVVAR-CLDS----LTPIIKPG--TTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCC   78 (273)
Q Consensus         6 ~~~~~~~~IKs~~EI~~~R~A~~i~~~-~~~~----~~~~i~~G--~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~   78 (273)
                      +....++.||+..|++.||.+- |-|. ++.+    +-+.+.-|  ++|.+++..++++-.++...   .+ .+|+++..
T Consensus       299 Spi~~~kAiKN~~E~~gmr~sh-irD~~Alve~~~wle~~~~~g~~itE~~~A~kle~fR~~~~~f---mg-lSFeTIS~  373 (606)
T KOG2413         299 SPISRAKAIKNDDELKGMRNSH-IRDGAALVEYFAWLEKELHKGYTITEYDAADKLEEFRSRQDHF---MG-LSFETISS  373 (606)
T ss_pred             CHHHHHHHHCCHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC---CC-CCCCEEEC
T ss_conf             7889999855768763556531-0358999999998766530376204344888999998764424---57-67100224


Q ss_pred             C-CCCCCCCCCCC---CCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCCCC
Q ss_conf             3-44642111212---222001340579978766530002311123334444321036778776543221100-112122
Q gi|254780899|r   79 T-SINHVICHGIP---SNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAV-KLNANI  153 (273)
Q Consensus        79 ~-s~N~~~~H~~p---~d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i~~i-kpG~~~  153 (273)
                      + |.|++++||.|   +++++.+..+.++|.|+.|.--.+|+|||+.+|+|+.++++.|..++...-+...++ ..|...
T Consensus       374 s~G~NgAviHYsP~~e~n~~i~~~kiyL~DSGaQY~DGTTDvTRT~HfgePs~eek~~yT~VLkGhi~la~~vFP~~t~g  453 (606)
T KOG2413         374 SVGPNGAVIHYSPPAETNRIVSPDKIYLCDSGAQYLDGTTDVTRTVHFGEPTAEEKEAYTLVLKGHIALARAVFPKGTKG  453 (606)
T ss_pred             CCCCCCEEEECCCCCCCCCEECCCEEEEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             67888503520798545632067637998068642468654247786699988999999999874367652116899985


Q ss_pred             CHHHHHHHHHHHHCCCEECCCCCCCCCC--CCCCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECCCCCCEECCCCCE
Q ss_conf             1048999999986296010475212332--21135403653156454566451167378831114437776256468866
Q gi|254780899|r  154 EDIGKAIQRYAHSERYSVVEVFCGHGIG--KSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWT  231 (273)
Q Consensus       154 ~ei~~a~~~~~~~~g~~~~~~~~GHgiG--l~~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~~~d~w~  231 (273)
                      +.++..+|..+++.|.. +.|.+|||+|  |++||+|....+..  ..+...|++|||+++|||.|              
T Consensus       454 ~~lD~laR~~LW~~gLD-y~HgTGHGVG~fLnVhE~P~~is~r~--~~~~~~l~ag~~~s~EPGYY--------------  516 (606)
T KOG2413         454 SVLDALARSALWKAGLD-YGHGTGHGVGSFLNVHEGPIGIGYRP--YSSNFPLQAGMVFSIEPGYY--------------  516 (606)
T ss_pred             CHHHHHHHHHHHHHCCC-CCCCCCCCCCCCEEECCCCCEEEEEE--CCCCCHHCCCEEECCCCCCC--------------
T ss_conf             00699999999860666-68888766565067415886100124--58872003853862688611--------------


Q ss_pred             EEECCCCEEEEEEEEEEECCCCC----------EECCCCCCC
Q ss_conf             88337871678442189847985----------765267988
Q gi|254780899|r  232 AVTRDRSLSAQYEHTIGITKAGC----------EIFTLSPNN  263 (273)
Q Consensus       232 ~~~~~g~~~~~~Ed~vlVT~~G~----------E~LT~~p~~  263 (273)
                         +||.||+|+|+-++|.+.+-          |.||..|..
T Consensus       517 ---~dg~fGIRienv~~vvd~~~~~~~~~~L~fe~lT~vP~q  555 (606)
T KOG2413         517 ---KDGEFGIRIENVVEVVDAGTKHNFRGFLTFEPLTLVPYQ  555 (606)
T ss_pred             ---CCCCCEEEEEEEEEEEECCCCCCCCCEEEECCCEECCEE
T ss_conf             ---068642888648999865424344340223110255326


No 31 
>KOG2776 consensus
Probab=99.90  E-value=4.2e-22  Score=167.85  Aligned_cols=263  Identities=19%  Similarity=0.251  Sum_probs=200.2

Q ss_pred             CCCCHHH-HCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC--CC-CCCCCCCCCC
Q ss_conf             9772033-139788539999999999999999999999997579988999999999999985983--03-4433244455
Q gi|254780899|r    1 MLSSSSR-ESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAI--PA-TLNYRGYKKS   76 (273)
Q Consensus         1 ~~~~~~~-~~~~~~IKs~~EI~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~--~~-~~~~~~f~~~   76 (273)
                      |++.++. +...-+|-++..+..+|-|++|+..+++.+.+.+.||.+..||+.....++.+.-+.  -. -....|-...
T Consensus         1 mss~d~~~~~~d~tia~~~vvtKYk~AgeI~n~~lk~V~~~~~~gasv~eiC~~GD~~i~E~t~kiYK~eK~~~KGIAfP   80 (398)
T KOG2776           1 MSSHDETITEKDKTIANDSVVTKYKMAGEIVNKVLKSVVELCQPGASVREICEKGDSLILEETGKIYKKEKDFEKGIAFP   80 (398)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             98543442220001034777776657899999999999998458960888887356899999988875344452265556


Q ss_pred             CCCCCCCCCCCCCC----CCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCC-----CCCHHHHHHHHHHHHHHHHCC
Q ss_conf             32344642111212----222001340579978766530002311123334444-----321036778776543221100
Q gi|254780899|r   77 CCTSINHVICHGIP----SNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIK-----RAAERILQVTYESLYKGIAAV  147 (273)
Q Consensus        77 ~~~s~N~~~~H~~p----~d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~-----~~~~~l~~~~~~a~~~~i~~i  147 (273)
                      +|+|+|+++||+.|    .+..|+.||+|+||+|++++||.+-++.|++++.++     ....++..++..|.++++..+
T Consensus        81 T~Isvnncv~h~sPlksd~~~~Lk~GDvVKIdLG~HiDGfiA~vaHT~VV~~~~~~~vtG~kADvI~AAh~A~eaa~rll  160 (398)
T KOG2776          81 TSISVNNCVCHFSPLKSDADYTLKEGDVVKIDLGVHIDGFIALVAHTIVVGPAPDTPVTGRKADVIAAAHLAAEAALRLL  160 (398)
T ss_pred             CEECCCCCEECCCCCCCCCCCCCCCCCEEEEEECCEECCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             05630010014677877876322479879997411130011001445895378888564713579999899999999984


Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCC-CEEEECCCC---CCCCCCEECCCCEEEECCEEECCCCCC
Q ss_conf             1121221048999999986296010475212332211354-036531564---545664511673788311144377762
Q gi|254780899|r  148 KLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSFHEK-PEILHFYDP---LYPSVGTFQEGMVFTIEPMLNVGGSSA  223 (273)
Q Consensus       148 kpG~~~~ei~~a~~~~~~~~g~~~~~~~~GHgiGl~~hE~-P~i~~~~~~---~~~~~~~le~GMV~aiEP~i~~~~~~~  223 (273)
                      |||++-..|.+++++.+.++++..+.....|..-..+.++ +.|....+.   ..-....++++.|++++.-...+....
T Consensus       161 kpgn~n~~vT~~i~k~aas~~c~pVegmlshql~~~~idGeKtIi~n~sdqq~~~~e~~~fe~~Evya~Di~~stg~~~~  240 (398)
T KOG2776         161 KPGNTNTQVTRAIVKTAASYGCKPVEGMLSHQLKQHVIDGEKTIIQNPSDQQKKEHEKTEFEEHEVYAIDILVSTGEGSP  240 (398)
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEECCCCHHHHCHHCCCCCCCCEEEEEEEEEECCCCCC
T ss_conf             78999953778999999970886666611477776521577247627653431200035555543788888985488864


Q ss_pred             EECCCC--------------------------------------------------------------CEE-EECCCCEE
Q ss_conf             564688--------------------------------------------------------------668-83378716
Q gi|254780899|r  224 KVLSDG--------------------------------------------------------------WTA-VTRDRSLS  240 (273)
Q Consensus       224 ~~~~d~--------------------------------------------------------------w~~-~~~~g~~~  240 (273)
                      ...++.                                                              +.+ +.++|.+.
T Consensus       241 K~~~~~~~t~y~kd~~~~y~LKlKaSR~~~seI~k~~g~~PF~~rs~~~e~r~rmGl~Ec~~~~ll~p~pVl~~kp~~~v  320 (398)
T KOG2776         241 KEGDDRAPTIYYKDESVSYMLKLKASRALLSEIKKKFGVMPFTLRSLEEEFRARLGLVECTNHGLLVPYPVLYEKPGEFV  320 (398)
T ss_pred             CCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHH
T ss_conf             43444465369833216777888999999999875348755344664367776521687604763100025653886310


Q ss_pred             EEEEEEEEECCCCCEECCCCCCC
Q ss_conf             78442189847985765267988
Q gi|254780899|r  241 AQYEHTIGITKAGCEIFTLSPNN  263 (273)
Q Consensus       241 ~~~Ed~vlVT~~G~E~LT~~p~~  263 (273)
                      +|++.||+...+|.-.||..|-+
T Consensus       321 aqfk~TvllmPng~~~l~~~p~~  343 (398)
T KOG2776         321 AQFKFTVLLMPNGSLRLTGSPFK  343 (398)
T ss_pred             EEEEEEEEECCCCCCCCCCCCCC
T ss_conf             10246789635886536678988


No 32 
>KOG1189 consensus
Probab=99.89  E-value=3.3e-22  Score=168.53  Aligned_cols=241  Identities=16%  Similarity=0.200  Sum_probs=178.6

Q ss_pred             HHCCCEEECCHHHHHHHHHHHHHHHHHHHH-----HHHHCCCC--CCHHHHHHHHHHHHHHCCCCCCCC---CCCCCCCC
Q ss_conf             313978853999999999999999999999-----99975799--889999999999999859830344---33244455
Q gi|254780899|r    7 RESGSINIYTPEELENIRSACNVVARCLDS-----LTPIIKPG--TTTEEIDDFVLKFGMENNAIPATL---NYRGYKKS   76 (273)
Q Consensus         7 ~~~~~~~IKs~~EI~~~R~A~~i~~~~~~~-----~~~~i~~G--~se~el~~~~~~~~~~~g~~~~~~---~~~~f~~~   76 (273)
                      .......||++.||+.+|+|+.++...|..     +.+.+-.+  ++-..|...+...+...-..+...   --+.||++
T Consensus       130 ~ls~l~avKDd~Ei~~irksa~~s~~vm~k~~~~~~~~aiD~ekkvthskLsD~~e~~I~~~k~s~~l~~~~~d~cY~PI  209 (960)
T KOG1189         130 GLSKLFAVKDDEEIANIRKSAAASSAVMNKYLVDELVEAIDEEKKVTHSKLSDLMESAIEDKKYSPGLDPDLLDMCYPPI  209 (960)
T ss_pred             HHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
T ss_conf             54565033778999888887788999999999999999865124010678888898764223247666843266336736


Q ss_pred             CCCCCCCCC-CCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf             323446421-1121222200134057997876653000231112333444432103677877654322110011212210
Q gi|254780899|r   77 CCTSINHVI-CHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIED  155 (273)
Q Consensus        77 ~~~s~N~~~-~H~~p~d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i~~ikpG~~~~e  155 (273)
                      +.+|-|-.+ +....++..|  + +++.-+|++|++||+.++|||.+ +|+.++++.|+..+.+|.+.++.+|||.+.++
T Consensus       210 iqSGg~ydlk~sa~s~~~~L--~-~I~cs~G~RynsYCSNv~RT~Li-dpssemq~nY~fLl~aqe~il~~lrpG~ki~d  285 (960)
T KOG1189         210 IQSGGKYDLKPSAVSDDNHL--H-VILCSLGIRYNSYCSNVSRTYLI-DPSSEMQENYEFLLAAQEEILKLLRPGTKIGD  285 (960)
T ss_pred             HHCCCCCCCCCCCCCCCCCC--E-EEEEEECCHHHHHHHCCEEEEEE-CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             63377645652313476653--0-58855020465541022003774-67089888899999999999997458981788


Q ss_pred             HHHHHHHHHHHCCCEECCCC---CCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECCCCCCEECCCCCEE
Q ss_conf             48999999986296010475---212332211354036531564545664511673788311144377762564688668
Q gi|254780899|r  156 IGKAIQRYAHSERYSVVEVF---CGHGIGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTA  232 (273)
Q Consensus       156 i~~a~~~~~~~~g~~~~~~~---~GHgiGl~~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~~~d~w~~  232 (273)
                      |+.++-+++++.+......|   .|-||||.+-|.-.+.     ...++.+|++||||.|--|+.    ..   .+    
T Consensus       286 VY~~~l~~v~k~~Pel~~~~~k~lG~~iGlEFREssl~i-----naKnd~~lk~gmvFni~lGf~----nl---~n----  349 (960)
T KOG1189         286 VYEKALDYVEKNKPELVPNFTKNLGFGIGLEFRESSLVI-----NAKNDRVLKKGMVFNISLGFS----NL---TN----  349 (960)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCC-----CCCCHHHHCCCCEEEEEECCC----CC---CC----
T ss_conf             999999999853932456665430421323761154201-----666623415784899986666----56---78----


Q ss_pred             EECCCCEEEEEEEEEEECCCCC-EECCCCCCCCCCC
Q ss_conf             8337871678442189847985-7652679886768
Q gi|254780899|r  233 VTRDRSLSAQYEHTIGITKAGC-EIFTLSPNNLGQP  267 (273)
Q Consensus       233 ~~~~g~~~~~~Ed~vlVT~~G~-E~LT~~p~~l~~~  267 (273)
                      -...+.+...+.|||+|+++++ ++||..++..-.+
T Consensus       350 ~~~~~~yaL~l~DTvlv~e~~p~~vLT~~~K~~~dv  385 (960)
T KOG1189         350 PESKNSYALLLSDTVLVGEDPPAEVLTDSAKAVKDV  385 (960)
T ss_pred             CCCCCCHHHHCCCEEEECCCCCCHHHCCCCHHHCCC
T ss_conf             655650423102237845899642311243333032


No 33 
>KOG2775 consensus
Probab=99.87  E-value=1e-20  Score=158.62  Aligned_cols=233  Identities=24%  Similarity=0.348  Sum_probs=182.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             399999999999999999999999975799889999999999999---85983034433244455323446421112122
Q gi|254780899|r   15 YTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGM---ENNAIPATLNYRGYKKSCCTSINHVICHGIPS   91 (273)
Q Consensus        15 Ks~~EI~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~---~~g~~~~~~~~~~f~~~~~~s~N~~~~H~~p~   91 (273)
                      -..+...-+|+|+++..++-+++...|+|||+-.||+..++...+   ..++..+.   .+||+-  .|.|+|..||.|+
T Consensus        80 ~~~~i~~d~rraAE~HRqvR~yv~s~ikPGmtm~ei~e~iEnttR~li~e~gl~aG---i~FPtG--~SlN~cAAHyTpN  154 (397)
T KOG2775          80 TESDIYQDLRRAAEAHRQVRKYVQSIIKPGMTMIEICETIENTTRKLILENGLNAG---IGFPTG--CSLNHCAAHYTPN  154 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC---CCCCCC--CCCCCHHHHCCCC
T ss_conf             30487888999999999999999986167642999999998889999874551027---667776--6621034306899


Q ss_pred             ---CCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             ---22001340579978766530002311123334444321036778776543221100112122104899999998629
Q gi|254780899|r   92 ---NKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSER  168 (273)
Q Consensus        92 ---d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~g  168 (273)
                         ..+|+.+|+++||+|.+++|-..|++.|+.+   ++....|..++++|.+.+|+-..-.++..||.++++++++++.
T Consensus       155 aGd~tVLqydDV~KiDfGthi~GrIiDsAFTv~F---~p~~d~Ll~AvreaT~tGIkeaGiDvRlcdiG~aiqEVmeSyE  231 (397)
T KOG2775         155 AGDKTVLKYDDVMKIDFGTHIDGRIIDSAFTVAF---NPKYDPLLAAVREATNTGIKEAGIDVRLCDIGEAIQEVMESYE  231 (397)
T ss_pred             CCCCEEEEECCEEEEECCCCCCCEEEEEEEEEEE---CCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHEE
T ss_conf             9983464206568874021106727534568860---7552089999998875026552840232103688999766307


Q ss_pred             C---------EECCCCCCCCCCCC-CCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECCCCCCEECCC----------
Q ss_conf             6---------01047521233221-135403653156454566451167378831114437776256468----------
Q gi|254780899|r  169 Y---------SVVEVFCGHGIGKS-FHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSD----------  228 (273)
Q Consensus       169 ~---------~~~~~~~GHgiGl~-~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~~~~~~~d----------  228 (273)
                      .         ..++++.||+|+.. +|-.-.++..   .-++.+.+|+|..|+||.+-++|.  +++.+|          
T Consensus       232 vEi~Gk~~~VKpIrnLnGHSI~~yrIH~gksVPiV---kgge~trmee~e~yAIETFgSTGk--G~v~ddmecSHymkn~  306 (397)
T KOG2775         232 VEINGKTYQVKPIRNLNGHSIAQYRIHGGKSVPIV---KGGEQTRMEEGEIYAIETFGSTGK--GYVHDDMECSHYMKNF  306 (397)
T ss_pred             EEECCCEEEEEECCCCCCCCCCCEEEECCCCCCEE---CCCCCEEECCCEEEEEEEECCCCC--CEECCCCCCCHHHHCC
T ss_conf             87678162000131357874332476258332224---477311320770699984046776--2455886410465403


Q ss_pred             ---------------------C---------C-------------------EEE-------ECCCCEEEEEEEEEEECCC
Q ss_conf             ---------------------8---------6-------------------688-------3378716784421898479
Q gi|254780899|r  229 ---------------------G---------W-------------------TAV-------TRDRSLSAQYEHTIGITKA  252 (273)
Q Consensus       229 ---------------------~---------w-------------------~~~-------~~~g~~~~~~Ed~vlVT~~  252 (273)
                                           +         |                   +++       --+|++.+||||||+..+.
T Consensus       307 ~~~~vplrl~~~K~ll~~I~knfgTLaFcrR~lDrlGetKyLmAlk~Lc~~Giv~pyPPLcDi~G~ytAQfEHTIll~pt  386 (397)
T KOG2775         307 ELGHVPLRLQRSKGLLNTIDKNFGTLAFCRRWLDRLGETKYLMALKNLCDMGIVQPYPPLCDIKGSYTAQFEHTILLSPT  386 (397)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECEEEEECCH
T ss_conf             43446646177899999986104542112788976404789999876654154667886315676413200206784411


Q ss_pred             CCEECCCC
Q ss_conf             85765267
Q gi|254780899|r  253 GCEIFTLS  260 (273)
Q Consensus       253 G~E~LT~~  260 (273)
                      +-|++|+-
T Consensus       387 ~KEVvsrG  394 (397)
T KOG2775         387 GKEVVSRG  394 (397)
T ss_pred             HCCCCCCC
T ss_conf             13010156


No 34 
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=99.59  E-value=1.4e-14  Score=117.66  Aligned_cols=245  Identities=16%  Similarity=0.118  Sum_probs=161.9

Q ss_pred             CCCHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHH---CCCC---CCHHHHHHHHHHHHH----------HCCCCC
Q ss_conf             772033139788539999999999999999999999997---5799---889999999999999----------859830
Q gi|254780899|r    2 LSSSSRESGSINIYTPEELENIRSACNVVARCLDSLTPI---IKPG---TTTEEIDDFVLKFGM----------ENNAIP   65 (273)
Q Consensus         2 ~~~~~~~~~~~~IKs~~EI~~~R~A~~i~~~~~~~~~~~---i~~G---~se~el~~~~~~~~~----------~~g~~~   65 (273)
                      +|..-....+-.+|+.+||+.+|.+++..+..|....+.   +--|   +|-..+...+...+.          +.|-..
T Consensus       158 ~DvslgLsk~~~~KD~~E~an~~~ss~~s~~~M~~~~~em~~~~D~~~kit~~KlsD~mes~iddv~f~q~~s~~l~~~~  237 (1001)
T COG5406         158 SDVSLGLSKMFLTKDAEEIANCRASSAASSVLMRYFVKEMEMLWDGAFKITHGKLSDLMESLIDDVEFFQTKSLKLGDID  237 (1001)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHCCCCCCCCC
T ss_conf             23323266776006688875310232377999999887799987400121221578876520013666643375424454


Q ss_pred             CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             344332444553234464-2111212222001340579978766530002311123334444321036778776543221
Q gi|254780899|r   66 ATLNYRGYKKSCCTSINH-VICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGI  144 (273)
Q Consensus        66 ~~~~~~~f~~~~~~s~N~-~~~H~~p~d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i  144 (273)
                      --.-.+.|.+++.+|..- .-|.....++. -.||+|++-+|..|+|||+.++|||.. +|+.+|++-|+-++.+|...+
T Consensus       238 ~d~lew~ytpiiqsg~~~Dl~psa~s~~~~-l~gd~vl~s~GiRYn~YCSn~~RT~l~-dp~~e~~~Ny~fl~~lQk~i~  315 (1001)
T COG5406         238 LDQLEWCYTPIIQSGGSIDLTPSAFSFPME-LTGDVVLLSIGIRYNGYCSNMSRTILT-DPDSEQQKNYEFLYMLQKYIL  315 (1001)
T ss_pred             HHHHHHHCCHHHCCCCEEECCCCCCCCCHH-HCCCEEEEEEEEEECCCCCCCCCEEEE-CCCHHHHHHHHHHHHHHHHHH
T ss_conf             034421035022158613056202158544-337457999513433500234415870-773676535899999999998


Q ss_pred             HCCCCCCCCCHHHHHHHHHHHHCCCEECCCC---CCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCEEEECCEEECCCC
Q ss_conf             1001121221048999999986296010475---2123322113540365315645456645116737883111443777
Q gi|254780899|r  145 AAVKLNANIEDIGKAIQRYAHSERYSVVEVF---CGHGIGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGS  221 (273)
Q Consensus       145 ~~ikpG~~~~ei~~a~~~~~~~~g~~~~~~~---~GHgiGl~~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~~  221 (273)
                      ..+|||...++|+..+.+++++.|.....+|   +|-++|+.+.+...+.+.     .+.++|++||+|.|--|+.    
T Consensus       316 ~~~rpG~~~g~iY~~~~~yi~~~~pel~pnF~~nvG~~igiefR~s~~~~nv-----kn~r~lq~g~~fnis~gf~----  386 (1001)
T COG5406         316 GLVRPGTDSGIIYSEAEKYISSNGPELGPNFIYNVGLMIGIEFRSSQKPFNV-----KNGRVLQAGCIFNISLGFG----  386 (1001)
T ss_pred             HHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCEEC-----CCCCEECCCCEEEEEECCC----
T ss_conf             5207998705689999999872398647407643201113010014662542-----4784311350799961356----


Q ss_pred             CCEECCCCCEEEECCCCEEEEEEEEEEECCCCCEECCCCCCCC
Q ss_conf             6256468866883378716784421898479857652679886
Q gi|254780899|r  222 SAKVLSDGWTAVTRDRSLSAQYEHTIGITKAGCEIFTLSPNNL  264 (273)
Q Consensus       222 ~~~~~~d~w~~~~~~g~~~~~~Ed~vlVT~~G~E~LT~~p~~l  264 (273)
                       -.+.+      -....+..++-||+-|+-+-|-+||.+|+--
T Consensus       387 -nl~~~------~~~Nnyal~l~dt~qi~ls~p~~~t~~~kaq  422 (1001)
T COG5406         387 -NLINP------HPKNNYALLLIDTEQISLSNPIVFTDSPKAQ  422 (1001)
T ss_pred             -CCCCC------CCCCCHHHHHCCCEEEECCCCEECCCCCCCC
T ss_conf             -55788------7665254441242586337860014674445


No 35 
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=97.01  E-value=0.0027  Score=42.23  Aligned_cols=96  Identities=15%  Similarity=0.136  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCCCCCCCC-CCCCCCCCCEEE
Q ss_conf             9999999999999997579988999999999999985983034433244--4553234464211121-222200134057
Q gi|254780899|r   25 SACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGY--KKSCCTSINHVICHGI-PSNKQLREGDIV  101 (273)
Q Consensus        25 ~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f--~~~~~~s~N~~~~H~~-p~d~~l~~GD~v  101 (273)
                      +..+.+.+++..+++.++||.+..||...+++.+.+.|..+- .++.|-  .... .--.-.+||+. +++.+|++|++.
T Consensus       104 ~Li~aa~~al~~ai~~~kpG~~~~dIg~~Ie~~~~~~g~~~v-~~l~GH~i~ry~-ih~~~~Ipn~~~~~~~~l~~g~v~  181 (291)
T cd01088         104 DLLEAAKEALNAAIKEAGPDVRLGEIGEAIEEVIESYGFKPI-RNLTGHSIERYR-LHAGKSIPNVKGGEGTRLEEGDVY  181 (291)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEE-CCCCCCCCCCCC-CCCCCEECEECCCCCCEECCCCEE
T ss_conf             899999999999999853898989999999999998697700-365255777722-169975342528998366068689


Q ss_pred             EEEEEEEE-EEECCCCCCCCCC
Q ss_conf             99787665-3000231112333
Q gi|254780899|r  102 NVDVTYVV-NGWHGDSSRMYPV  122 (273)
Q Consensus       102 ~iD~g~~~-~GY~~D~~RT~~~  122 (273)
                      .||..+.- .|+..+-.+|.++
T Consensus       182 aIEp~~t~G~g~v~~~~~~~iy  203 (291)
T cd01088         182 AIEPFATTGKGYVHDGPECSIY  203 (291)
T ss_pred             EEEEEEECCCCEEECCCCEEEE
T ss_conf             9855740587526338961588


No 36 
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=96.94  E-value=0.0031  Score=41.89  Aligned_cols=90  Identities=19%  Similarity=0.178  Sum_probs=59.5

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEECCC--CCCCCC----CCCCCCCCEEEECCCCCC-CC
Q ss_conf             21036778776543221100112122104899999998629601047--521233----221135403653156454-56
Q gi|254780899|r  128 AAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEV--FCGHGI----GKSFHEKPEILHFYDPLY-PS  200 (273)
Q Consensus       128 ~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~g~~~~~~--~~GHgi----Gl~~hE~P~i~~~~~~~~-~~  200 (273)
                      +.|+.-+++.++++...+.+|||++..||++.+++++.+.+-..+..  ...+|+    -.++-|  .+. .+.|.. .+
T Consensus         3 KmR~Ag~i~a~~l~~~~~~i~pG~tt~eld~~~~~~i~~~~~~~~~~~~~~~~G~~~p~CiSvNe--~v~-HGiP~~~~~   79 (228)
T cd01089           3 KYKTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEELGKVYKKEKKLEKGIAFPTCISVNN--CVC-HFSPLKSDA   79 (228)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCC--EEE-CCCCCCCCC
T ss_conf             89999999999999999578699969999999999999830432567666667778672750254--445-689998888


Q ss_pred             CCEECCCCEEEECCEEECCC
Q ss_conf             64511673788311144377
Q gi|254780899|r  201 VGTFQEGMVFTIEPMLNVGG  220 (273)
Q Consensus       201 ~~~le~GMV~aiEP~i~~~~  220 (273)
                      +++|++|.+++|+-+++..+
T Consensus        80 ~~~L~~GDiV~iD~g~~~dG   99 (228)
T cd01089          80 TYTLKDGDVVKIDLGCHIDG   99 (228)
T ss_pred             CCCCCCCCEEEEEEEEEECC
T ss_conf             73546899899977688687


No 37 
>PRK08671 methionine aminopeptidase; Provisional
Probab=96.85  E-value=0.0039  Score=41.19  Aligned_cols=91  Identities=18%  Similarity=0.196  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC--CCC-CCCCCCCCCCCCCCC-CCCCCCCCEE
Q ss_conf             999999999999999757998899999999999998598303443324--445-532344642111212-2220013405
Q gi|254780899|r   25 SACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRG--YKK-SCCTSINHVICHGIP-SNKQLREGDI  100 (273)
Q Consensus        25 ~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~--f~~-~~~~s~N~~~~H~~p-~d~~l~~GD~  100 (273)
                      +..+.+..+++.+++.++||++..||...+++.+.+.|..+- .++.|  ... .+-  .+-.+||+.. +...+++|++
T Consensus       105 ~Li~aa~~al~~ai~~~kpG~~~~dIg~~I~~~~~~~g~~~v-~~~~gHgigry~iH--~~~~Ipn~~~~~~~~l~~g~v  181 (293)
T PRK08671        105 DLVEASREALEAAIEIVKPGVSVGEIGRAIEETIKSYGFKPI-RNLTGHGIERYDLH--AGPSIPNYDEGGGAVLKEGDV  181 (293)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEE-CCCCCCCCCCCCCC--CCCEECCCCCCCCCEECCCCE
T ss_conf             999999999999998706997978999999999998698895-14444676651542--798705206998715507858


Q ss_pred             EEEEEEEEE-EEECCCCCC
Q ss_conf             799787665-300023111
Q gi|254780899|r  101 VNVDVTYVV-NGWHGDSSR  118 (273)
Q Consensus       101 v~iD~g~~~-~GY~~D~~R  118 (273)
                      ..||..+.- .|+..+-.+
T Consensus       182 ~aIEpf~ttG~g~v~e~~~  200 (293)
T PRK08671        182 YAIEPFATDGEGQVVEGPE  200 (293)
T ss_pred             EEEEEEEECCCCEEEECCC
T ss_conf             9994476278875876796


No 38 
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=96.80  E-value=0.0039  Score=41.24  Aligned_cols=86  Identities=12%  Similarity=0.114  Sum_probs=48.3

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCE-ECCCCCC--CCCCCCCCCCCEEEECCCCCCCCCCEEC
Q ss_conf             103677877654322110011212210489999999862960-1047521--2332211354036531564545664511
Q gi|254780899|r  129 AERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYS-VVEVFCG--HGIGKSFHEKPEILHFYDPLYPSVGTFQ  205 (273)
Q Consensus       129 ~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~g~~-~~~~~~G--HgiGl~~hE~P~i~~~~~~~~~~~~~le  205 (273)
                      .++.-+++.++++.+.+.+|||++..||+..+++++.++|.- .+.++-|  -.+.+++-|   ....+.|.  +..+|+
T Consensus        14 ~r~Ag~i~a~~l~~~~~~v~pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~~ciSvNe---~v~HgiP~--d~~vlk   88 (255)
T COG0024          14 MREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFPTCISVNE---VVAHGIPG--DKKVLK   88 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEHHCCCCCCCCCEEEEHHH---EEEECCCC--CCCCCC
T ss_conf             9999999999999999871799979999999999999748636110666988563840315---03514789--873458


Q ss_pred             CCCEEEECCEEECC
Q ss_conf             67378831114437
Q gi|254780899|r  206 EGMVFTIEPMLNVG  219 (273)
Q Consensus       206 ~GMV~aiEP~i~~~  219 (273)
                      +|-++.|+-++.+.
T Consensus        89 ~GDiv~IDvg~~~d  102 (255)
T COG0024          89 EGDIVKIDVGAHID  102 (255)
T ss_pred             CCCEEEEEEEEEEC
T ss_conf             99989998899977


No 39 
>PRK09795 aminopeptidase; Provisional
Probab=96.52  E-value=0.04  Score=34.48  Aligned_cols=80  Identities=8%  Similarity=0.001  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEE--CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCC
Q ss_conf             036778776543221100112122104899999998629601--047521233221135403653156454566451167
Q gi|254780899|r  130 ERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSV--VEVFCGHGIGKSFHEKPEILHFYDPLYPSVGTFQEG  207 (273)
Q Consensus       130 ~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~g~~~--~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~~~le~G  207 (273)
                      ++..+++..++.++++.+|||++=.||.+.+...+.+.|-..  +...++.|--      ..++|.    ...+.++++|
T Consensus       137 r~A~~iad~~~~~~~~~i~~G~tE~eiaa~~~~~~~~~Ga~~~sf~~iv~sG~~------~a~pH~----~~s~r~i~~G  206 (361)
T PRK09795        137 RLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKASFDTIVASGWR------GALPHG----KASDKIVAAG  206 (361)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCC------CCCCCC----CCCCCCCCCC
T ss_conf             999999999999999876599889999999999999829986666603036677------746778----8777351689


Q ss_pred             CEEEECCEEECC
Q ss_conf             378831114437
Q gi|254780899|r  208 MVFTIEPMLNVG  219 (273)
Q Consensus       208 MV~aiEP~i~~~  219 (273)
                      -.+.|+-+....
T Consensus       207 d~v~iD~G~~~~  218 (361)
T PRK09795        207 EFVTLDFGALYQ  218 (361)
T ss_pred             CEEEEEEEEEEC
T ss_conf             989998758989


No 40 
>PRK12318 methionine aminopeptidase; Provisional
Probab=96.42  E-value=0.011  Score=38.13  Aligned_cols=86  Identities=17%  Similarity=0.143  Sum_probs=56.6

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEECC-CC----CCCCCCCCCCCCCEEEECCCCCCCCCCE
Q ss_conf             103677877654322110011212210489999999862960104-75----2123322113540365315645456645
Q gi|254780899|r  129 AERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVE-VF----CGHGIGKSFHEKPEILHFYDPLYPSVGT  203 (273)
Q Consensus       129 ~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~g~~~~~-~~----~GHgiGl~~hE~P~i~~~~~~~~~~~~~  203 (273)
                      .++.-+++.++++.+.+.+|||++..||++.+++++.++|...-. .+    +-..+-.+..+  .++|.    -+++.+
T Consensus        52 mR~A~~I~a~~~~~~~~~ikpGvTe~Eld~~~~~~~~~~ga~pa~l~y~~~~Fp~~vc~s~N~--~v~Hg----iP~~~~  125 (291)
T PRK12318         52 IRKACQITARILDALCEAAKEGVTTNELDQLSRELHKKYDAIPAPLNYGHPPFPKTICTSLNE--VICHG----IPNDIP  125 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEECCC--EEECC----CCCCCC
T ss_conf             999999999999999836879998999999999999987898676677887888744872388--73168----999861


Q ss_pred             ECCCCEEEECCEEECCC
Q ss_conf             11673788311144377
Q gi|254780899|r  204 FQEGMVFTIEPMLNVGG  220 (273)
Q Consensus       204 le~GMV~aiEP~i~~~~  220 (273)
                      |++|.++.|+-+++..+
T Consensus       126 Lk~GDlV~iD~G~~y~G  142 (291)
T PRK12318        126 LKNGDIMNIDVSCIVDG  142 (291)
T ss_pred             CCCCCEEEEECCEEECC
T ss_conf             67999899956786898


No 41 
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=96.33  E-value=0.052  Score=33.68  Aligned_cols=87  Identities=15%  Similarity=0.258  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--CCC-CCC-CCCCCCC
Q ss_conf             999999999999999999757998899999999999998598303443324445532344642--111-212-2220013
Q gi|254780899|r   22 NIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSINHV--ICH-GIP-SNKQLRE   97 (273)
Q Consensus        22 ~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~N~~--~~H-~~p-~d~~l~~   97 (273)
                      ..|++.+++.++++++.+.+|||++..||...+++.+.+.|-. ....+.  ++.+....+..  +++ +.+ ++++|++
T Consensus       109 ~~~~~~~~v~ea~~~~i~~~kpG~~~~ev~~a~~~~~~~~g~~-~~~~~~--GHgvGl~~he~P~i~~~~~~~~~~~L~~  185 (238)
T cd01086         109 EAKKLVEVTEEALYKGIEAVKPGNRIGDIGHAIEKYAEKNGYS-VVREFG--GHGIGRKFHEEPQIPNYGRPGTGPKLKP  185 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC-CCCCEE--ECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9999999999999999987169989999999999999986998-354633--2624677666986264454899840569


Q ss_pred             CEEEEEEEEEEEEE
Q ss_conf             40579978766530
Q gi|254780899|r   98 GDIVNVDVTYVVNG  111 (273)
Q Consensus        98 GD~v~iD~g~~~~G  111 (273)
                      |-++.++-+....+
T Consensus       186 GmV~tiEP~i~~~~  199 (238)
T cd01086         186 GMVFTIEPMINLGT  199 (238)
T ss_pred             CCEEEEECEEECCC
T ss_conf             84899926484388


No 42 
>PRK07281 methionine aminopeptidase; Reviewed
Probab=96.24  E-value=0.019  Score=36.63  Aligned_cols=35  Identities=6%  Similarity=0.046  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             78776543221100112122104899999998629
Q gi|254780899|r  134 QVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSER  168 (273)
Q Consensus       134 ~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~g  168 (273)
                      +++.++++.+.+.+|||++..||++.+++.+.++|
T Consensus        18 ~i~a~~~~~~~~~ikpGit~~eld~~~~~~~~e~g   52 (286)
T PRK07281         18 DFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEDN   52 (286)
T ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             99999999888467699989999999999999759


No 43 
>KOG2738 consensus
Probab=96.14  E-value=0.014  Score=37.50  Aligned_cols=89  Identities=13%  Similarity=0.246  Sum_probs=58.9

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC-CEECCCCC--CCCCCCCCCCCCEEEECCCCCCCCCCEEC
Q ss_conf             1036778776543221100112122104899999998629-60104752--12332211354036531564545664511
Q gi|254780899|r  129 AERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSER-YSVVEVFC--GHGIGKSFHEKPEILHFYDPLYPSVGTFQ  205 (273)
Q Consensus       129 ~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~g-~~~~~~~~--GHgiGl~~hE~P~i~~~~~~~~~~~~~le  205 (273)
                      ++.....+++.++.+-.++|||++..||+.++...+-+.| |.-.-++.  .-++=.++.|   +...+   -++.+.||
T Consensus       125 mR~ac~LarevLd~Aa~~v~PgvTTdEiD~~VH~a~Ierg~YPSPLnYy~FPKS~CTSVNE---viCHG---IPD~RpLe  198 (369)
T KOG2738         125 MRKACRLAREVLDYAATLVRPGVTTDEIDRAVHNAIIERGAYPSPLNYYGFPKSVCTSVNE---VICHG---IPDSRPLE  198 (369)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCHHH---EEECC---CCCCCCCC
T ss_conf             9999999999999875025797638899999999998648858875457886666242221---46547---88867277


Q ss_pred             CCCEEEECCEEECCCCCC
Q ss_conf             673788311144377762
Q gi|254780899|r  206 EGMVFTIEPMLNVGGSSA  223 (273)
Q Consensus       206 ~GMV~aiEP~i~~~~~~~  223 (273)
                      .|..+.|+.-+|..++.+
T Consensus       199 dGDIvNiDVtvY~~GyHG  216 (369)
T KOG2738         199 DGDIVNIDVTVYLNGYHG  216 (369)
T ss_pred             CCCEEEEEEEEEECCCCC
T ss_conf             798786889999425257


No 44 
>TIGR00500 met_pdase_I methionine aminopeptidase, type I; InterPro: IPR002467   Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This group of metallopeptidases belong to MEROPS peptidase family M24 (clan MG), subfamily M24A.   Methionine aminopeptidase (3.4.11.18 from EC) (MAP) is responsible for the removal of the amino-terminal (initiator) methionine from nascent eukaryotic cytosolic and cytoplasmic prokaryotic proteins if the penultimate amino acid is small and uncharged. All MAP studied to date are monomeric proteins that require cobalt ions for activity. Two subfamilies of MAP enzymes are known to exist , . While being evolutionary related, they only share a limited amount of sequence similarity mostly clustered around the residues shown, in the Escherichia coli MAP , to be involved in cobalt-binding. The first family consists of enzymes from prokaryotes as well as eukaryotic MAP-1, while the second group (IPR002468 from INTERPRO) is made up of archaeal MAP and eukaryotic MAP-2. ; GO: 0004239 methionyl aminopeptidase activity, 0006508 proteolysis.
Probab=96.07  E-value=0.027  Score=35.62  Aligned_cols=88  Identities=14%  Similarity=0.166  Sum_probs=56.2

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC-C-EECCCCC------CCC--CC---CCCCCCCEEEECCC
Q ss_conf             1036778776543221100112122104899999998629-6-0104752------123--32---21135403653156
Q gi|254780899|r  129 AERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSER-Y-SVVEVFC------GHG--IG---KSFHEKPEILHFYD  195 (273)
Q Consensus       129 ~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~g-~-~~~~~~~------GHg--iG---l~~hE~P~i~~~~~  195 (273)
                      .|++-+.+.++++..-..++||+++.||+..+++++++.| = +.+..+.      |+-  .|   +++-|  .+-| + 
T Consensus        12 irkag~l~a~vl~~~~~~v~PGvST~eLD~i~~~~i~~~~hA~pAf~GY~PPfsdvgfPPft~~~C~S~Ne--~V~H-G-   87 (265)
T TIGR00500        12 IRKAGRLVAEVLEILEREVKPGVSTKELDRIAKDFIEKRGHAKPAFLGYYPPFSDVGFPPFTGSVCISVNE--VVIH-G-   87 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC--EEEE-C-
T ss_conf             99999999999999986368988789999999999984797235356787786668788555615632167--8885-1-


Q ss_pred             CCCCCCCEECCCCEEEECCEEECCCC
Q ss_conf             45456645116737883111443777
Q gi|254780899|r  196 PLYPSVGTFQEGMVFTIEPMLNVGGS  221 (273)
Q Consensus       196 ~~~~~~~~le~GMV~aiEP~i~~~~~  221 (273)
                       .++...+|++|-+++|+-++.+.++
T Consensus        88 -iP~~~~vLKdGDivniD~g~~~~Gy  112 (265)
T TIGR00500        88 -IPDKKKVLKDGDIVNIDVGVIYDGY  112 (265)
T ss_pred             -CCCCCCEEECCCEEEEEEEEEECCE
T ss_conf             -3884726513677875577886030


No 45 
>cd01092 APP-like Similar to Prolidase and Aminopeptidase P. The members of this subfamily presumably catalyse hydrolysis of Xaa-Pro dipeptides and/or release of any N-terminal amino acid, including proline, that is linked with proline.
Probab=96.03  E-value=0.083  Score=32.33  Aligned_cols=41  Identities=20%  Similarity=0.299  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             99999999999999999757998899999999999998598
Q gi|254780899|r   23 IRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNA   63 (273)
Q Consensus        23 ~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~   63 (273)
                      .++..+++.++++++.+.+|||++..||...+++.+.+.|-
T Consensus       105 ~~~~~~~~~~~~~~~i~~~kpG~~~~dv~~~~~~~~~~~g~  145 (208)
T cd01092         105 LKEIYEIVLEAQQAAIKAVKPGVTAKEVDKAARDVIEEAGY  145 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             99999999999999997237999099999999999997598


No 46 
>PRK05716 methionine aminopeptidase; Validated
Probab=96.03  E-value=0.074  Score=32.68  Aligned_cols=82  Identities=17%  Similarity=0.276  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--CCCC-CC-CCCCCCCC
Q ss_conf             99999999999999999757998899999999999998598303443324445532344642--1112-12-22200134
Q gi|254780899|r   23 IRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSINHV--ICHG-IP-SNKQLREG   98 (273)
Q Consensus        23 ~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~N~~--~~H~-~p-~d~~l~~G   98 (273)
                      .|+.-+++.++++++.+.+|||++..|+...+++.+.+.|-. ...++  ..+.+.......  ++|+ .+ .+.+|++|
T Consensus       120 ~~~~~~~~~~a~~~~i~~ikPG~~~~dv~~a~~~~~~~~g~~-~~~~~--~GHgiGl~~hE~P~i~~~~~~~~~~~Le~G  196 (252)
T PRK05716        120 DKRLCEVTKEALYLGIKAVKPGARLGDIGHAIQKYAEAEGFS-VVREY--CGHGIGRVFHEEPQVLHYGAPGDGPVLKEG  196 (252)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC-CEECC--CCCCCCCCCCCCCEECCCCCCCCCCCCCCC
T ss_conf             799998999999999997567980899999999999975887-20021--245567766769703565569998535698


Q ss_pred             EEEEEEEEE
Q ss_conf             057997876
Q gi|254780899|r   99 DIVNVDVTY  107 (273)
Q Consensus        99 D~v~iD~g~  107 (273)
                      -++.++-+.
T Consensus       197 MV~tiEP~i  205 (252)
T PRK05716        197 MVFTIEPMI  205 (252)
T ss_pred             CEEEEECEE
T ss_conf             289981615


No 47 
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=96.02  E-value=0.086  Score=32.23  Aligned_cols=38  Identities=16%  Similarity=0.190  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999975799889999999999999859
Q gi|254780899|r   25 SACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENN   62 (273)
Q Consensus        25 ~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g   62 (273)
                      ++-+++.++++++.+.+|||++-.|++..+.+.+.+.|
T Consensus       113 ~~~~~~~ea~~~a~~~ikPG~~~~dv~~~~~~~~~~~g  150 (228)
T cd01090         113 KIWEANVAVHERGLELIKPGARCKDIAAELNEMYREHD  150 (228)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf             99999999999999981699849999999999999749


No 48 
>pfam00557 Peptidase_M24 Metallopeptidase family M24. This family contains metallopeptidases. It also contains non-peptidase homologues such as the N terminal domain of Spt16 which is a histone H3-H4 binding module.
Probab=96.00  E-value=0.087  Score=32.19  Aligned_cols=82  Identities=16%  Similarity=0.144  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCEEE
Q ss_conf             9999999999999999757998899999999999998598303443324445532344642111212--22200134057
Q gi|254780899|r   24 RSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSINHVICHGIP--SNKQLREGDIV  101 (273)
Q Consensus        24 R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~N~~~~H~~p--~d~~l~~GD~v  101 (273)
                      +++.+.+.++++.+.+.+|||++-.||...+++.+.+.|-.. +..  .+.+.+........|....  ++.+|++|-++
T Consensus       106 ~~~~~~~~~~~~~~~~~~rpG~~~~ev~~~~~~~~~~~g~~~-~~~--~~GHgiGl~~~~~~P~~~~~~~~~~l~~GMv~  182 (207)
T pfam00557       106 RELYEAVLEAQEAAIAAVKPGVTGGDVDAAAREVLEEGGYGV-FPH--GLGHGIGLDVHDEGPYIISGGSDRVLEPGMVF  182 (207)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC-CCC--EECCCCCCCCCCCCCCCCCCCCCCEECCCCEE
T ss_conf             999999999999999863799889999999999999859998-766--10251266777898640579999897999899


Q ss_pred             EEEEEEE
Q ss_conf             9978766
Q gi|254780899|r  102 NVDVTYV  108 (273)
Q Consensus       102 ~iD~g~~  108 (273)
                      .++.+..
T Consensus       183 ~iep~~~  189 (207)
T pfam00557       183 TIEPGIY  189 (207)
T ss_pred             EECCEEE
T ss_conf             9989614


No 49 
>cd01066 APP_MetAP A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity compared to other metallo-aminopeptidases, suggesting they play roles in regulation of biological processes rather than general protein degradation.
Probab=95.94  E-value=0.061  Score=33.25  Aligned_cols=99  Identities=16%  Similarity=0.097  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCEE
Q ss_conf             9999999999999999997579988999999999999985983034433244455323446421112-122220013405
Q gi|254780899|r   22 NIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSINHVICHG-IPSNKQLREGDI  100 (273)
Q Consensus        22 ~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~N~~~~H~-~p~d~~l~~GD~  100 (273)
                      .+|++.+.+.++++++.+.++||.+..|+...+.+.+.+.|........  ..+.+..+.... |-. .-.+.+|++|-+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~pG~~~~~i~~~~~~~~~~~g~~~~~~~~--~GH~vG~~~~e~-p~~~~~~~~~l~~gmv  179 (207)
T cd01066         103 EQRELYEAVREAQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFGHR--TGHGIGLEIHEP-PVLKAGDDTVLEPGMV  179 (207)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCC--EECCCCCCCCCC-CCCCCCCCCEECCCCE
T ss_conf             0021789999999999985079997999999999999982888512352--243278647789-8557999988789999


Q ss_pred             EEEEEEEEEEE-ECCCCCCCCCCC
Q ss_conf             79978766530-002311123334
Q gi|254780899|r  101 VNVDVTYVVNG-WHGDSSRMYPVG  123 (273)
Q Consensus       101 v~iD~g~~~~G-Y~~D~~RT~~~G  123 (273)
                      +.++.+....+ +-..+.-|+++.
T Consensus       180 ~~iep~~~~~~~~g~~~ed~~~Vt  203 (207)
T cd01066         180 FAVEPGLYLPGGGGVRIEDTVLVT  203 (207)
T ss_pred             EEECCEEEECCCEEEEEEEEEEEC
T ss_conf             999996076893489982179984


No 50 
>PRK12896 methionine aminopeptidase; Reviewed
Probab=95.47  E-value=0.17  Score=30.27  Aligned_cols=39  Identities=21%  Similarity=0.319  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             999999999999999975799889999999999999859
Q gi|254780899|r   24 RSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENN   62 (273)
Q Consensus        24 R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g   62 (273)
                      ++..+++.++++++.+.+|||++..|+...+++.+.+.|
T Consensus       125 ~~l~~~~~ea~~~~i~~ikPG~~~~di~~a~~~~~~~~G  163 (254)
T PRK12896        125 EKLCRVAEEALWAGIKQVKAGRPLNDIGRAIEDFAKKNG  163 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf             999999999999999983599808999999999999869


No 51 
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=95.34  E-value=0.17  Score=30.23  Aligned_cols=81  Identities=12%  Similarity=0.207  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEE--CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCC
Q ss_conf             036778776543221100112122104899999998629601--047521233221135403653156454566451167
Q gi|254780899|r  130 ERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSV--VEVFCGHGIGKSFHEKPEILHFYDPLYPSVGTFQEG  207 (273)
Q Consensus       130 ~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~g~~~--~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~~~le~G  207 (273)
                      ++..+++..++.++++.++||++-.||.+.+...+.+.|...  +...++  .|-+    ..++|+    ...+..+++|
T Consensus       164 r~A~~i~~~a~~~~~~~~~~G~tE~ev~a~l~~~~~~~G~~~~sf~~iva--~G~n----~a~pH~----~~~~~~~~~g  233 (384)
T COG0006         164 RKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGAEGPSFDTIVA--SGEN----AALPHY----TPSDRKLRDG  233 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEE--ECCC----CCCCCC----CCCCCCCCCC
T ss_conf             99999999999999986107997999999999999980887577475787--6543----356567----8888766799


Q ss_pred             CEEEECCEEECCC
Q ss_conf             3788311144377
Q gi|254780899|r  208 MVFTIEPMLNVGG  220 (273)
Q Consensus       208 MV~aiEP~i~~~~  220 (273)
                      -.+.|+-+....+
T Consensus       234 d~vliD~G~~~~g  246 (384)
T COG0006         234 DLVLIDLGGVYNG  246 (384)
T ss_pred             CEEEEEECEEECC
T ss_conf             9899994606898


No 52 
>cd01087 Prolidase Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Probab=95.30  E-value=0.17  Score=30.26  Aligned_cols=87  Identities=13%  Similarity=0.138  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC----CC-------CCCCCC-CCCCCCCCCCC---CCCC-
Q ss_conf             99999999999999997579988999999999999985983----03-------443324-44553234464---2111-
Q gi|254780899|r   24 RSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAI----PA-------TLNYRG-YKKSCCTSINH---VICH-   87 (273)
Q Consensus        24 R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~----~~-------~~~~~~-f~~~~~~s~N~---~~~H-   87 (273)
                      +++-+.+.++++++.+.+|||++-.||...+.+.+.+.+..    ..       ...+.. |++.++-|+--   ..+. 
T Consensus       106 ~~~~~~~~~a~~~~~~~~kPG~~~~ei~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~GHgiGl~~He~~~~  185 (243)
T cd01087         106 RELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHYLGLDVHDVGGY  185 (243)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999999999999998379985999999999999999886597546588887527864442577357667645778764


Q ss_pred             --CCCCCCCCCCCEEEEEEEEEEEE
Q ss_conf             --21222200134057997876653
Q gi|254780899|r   88 --GIPSNKQLREGDIVNVDVTYVVN  110 (273)
Q Consensus        88 --~~p~d~~l~~GD~v~iD~g~~~~  110 (273)
                        ....+++|++|-++.|+-|..+.
T Consensus       186 ~~~~~~~~~L~~GMv~aiEPgiy~~  210 (243)
T cd01087         186 LRYLRRARPLEPGMVITIEPGIYFI  210 (243)
T ss_pred             CCCCCCCCCCCCCCEEEECCEEEEC
T ss_conf             5668889785799889987979865


No 53 
>PRK12897 methionine aminopeptidase; Reviewed
Probab=94.53  E-value=0.096  Score=31.92  Aligned_cols=84  Identities=15%  Similarity=0.230  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEE-CCCCCC--CCCCCCCCCCCEEEECCCCCCCCCCEECC
Q ss_conf             036778776543221100112122104899999998629601-047521--23322113540365315645456645116
Q gi|254780899|r  130 ERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSV-VEVFCG--HGIGKSFHEKPEILHFYDPLYPSVGTFQE  206 (273)
Q Consensus       130 ~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~g~~~-~~~~~G--HgiGl~~hE~P~i~~~~~~~~~~~~~le~  206 (273)
                      ++.-+++.++++.+.+.+|||.+-.||++.+...+.++|-.. ...+.|  .-+.....+.  ++|.    .+.+.+|++
T Consensus        14 r~A~~I~~~~~~~~~~~ikpG~te~el~~~~e~~~~~~Ga~~~~~g~~~fp~~v~~s~n~~--~~Hg----~p~~~~l~~   87 (248)
T PRK12897         14 HESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGYNGYPYAICASVNDE--MCHA----FPADVPLTE   87 (248)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCC--CCCC----CCCCCCCCC
T ss_conf             9999999999999997776999899999999999998599666457788880689506860--6678----999851458


Q ss_pred             CCEEEECCEEECC
Q ss_conf             7378831114437
Q gi|254780899|r  207 GMVFTIEPMLNVG  219 (273)
Q Consensus       207 GMV~aiEP~i~~~  219 (273)
                      |.++.|+-++...
T Consensus        88 GD~V~iD~G~~~~  100 (248)
T PRK12897         88 GDIVTIDMVVNLN  100 (248)
T ss_pred             CCEEEEECCEEEC
T ss_conf             9999995748899


No 54 
>cd01091 CDC68-like Related to aminopeptidase P and aminopeptidase M, a member of this domain family is present in cell division control protein 68, a transcription factor.
Probab=93.95  E-value=0.41  Score=27.69  Aligned_cols=98  Identities=11%  Similarity=0.185  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC----CCCCCCC--CCCCCCCC
Q ss_conf             99999999999999999975799889999999999999859830344332444553234----4642111--21222200
Q gi|254780899|r   22 NIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTS----INHVICH--GIPSNKQL   95 (273)
Q Consensus        22 ~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s----~N~~~~H--~~p~d~~l   95 (273)
                      .+++.-.+.-++.+++.+.+|||++-.++...+.+.+.+.+..  ..  ..|++.+..+    ..+. +.  ...++++|
T Consensus       120 ~q~~~Y~~vl~aq~~~i~~~kpG~~~~~v~~~a~~~I~~~~~~--l~--~~f~h~~GhgiGlE~hE~-~~~l~~kn~~~l  194 (243)
T cd01091         120 EQQKNYNFLLALQEEILKELKPGAKLSDVYQKTLDYIKKKKPE--LE--PNFTKNLGFGIGLEFRES-SLIINAKNDRKL  194 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH--HH--HHCCCCCCCEECEEECCC-CCCCCCCCCEEC
T ss_conf             9999999999999999999726996899999999999987788--87--257667623225575246-654489974041


Q ss_pred             CCCEEEEEEEEEE-E----------EEECCCCCCCCCCCC
Q ss_conf             1340579978766-5----------300023111233344
Q gi|254780899|r   96 REGDIVNVDVTYV-V----------NGWHGDSSRMYPVGK  124 (273)
Q Consensus        96 ~~GD~v~iD~g~~-~----------~GY~~D~~RT~~~G~  124 (273)
                      ++|-++.|.+|-. .          +.|.--++=|+.+++
T Consensus       195 k~GMvftV~~Gf~nl~~~~~~~~~~k~yal~I~DtV~Vte  234 (243)
T cd01091         195 KKGMVFNLSIGFSNLQNPEPKDKESKTYALLLSDTILVTE  234 (243)
T ss_pred             CCCCEEEEECCEEECCCCCCCCCCCCEEEEEEEEEEEECC
T ss_conf             7997899965505556876667667736999964899858


No 55 
>PRK10879 proline aminopeptidase P II; Provisional
Probab=93.90  E-value=0.59  Score=26.67  Aligned_cols=80  Identities=11%  Similarity=0.139  Sum_probs=51.6

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEE--CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEECC
Q ss_conf             1036778776543221100112122104899999998629601--04752123322113540365315645456645116
Q gi|254780899|r  129 AERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSV--VEVFCGHGIGKSFHEKPEILHFYDPLYPSVGTFQE  206 (273)
Q Consensus       129 ~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~g~~~--~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~~~le~  206 (273)
                      .++..+++.+|+.++++.+|||.+=.+|.+.++..+.+.|...  +...++-  |.+    -.++|+.    .++..|++
T Consensus       182 mr~A~~It~~a~~~~m~~~~pG~~E~ei~a~~~~~~~~~G~~~~ay~~Iva~--G~n----a~~lHy~----~~~~~l~~  251 (436)
T PRK10879        182 LRRAGEISALAHTRAMEKCRPGMFEYQLEGEIHHEFNRHGARYPSYNTIVGS--GEN----GCILHYT----ENESEMRD  251 (436)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEECC--CCC----CCCCCCC----CCCCCCCC
T ss_conf             9999999999999998536888738999999999999768985774544237--787----7566765----55442577


Q ss_pred             CCEEEECCEEEC
Q ss_conf             737883111443
Q gi|254780899|r  207 GMVFTIEPMLNV  218 (273)
Q Consensus       207 GMV~aiEP~i~~  218 (273)
                      |..+-|+-|...
T Consensus       252 gdlvliD~G~~~  263 (436)
T PRK10879        252 GDLVLIDAGCEY  263 (436)
T ss_pred             CCEEEEECCCEE
T ss_conf             777998237116


No 56 
>PTZ00053 methionine aminopeptidase II; Provisional
Probab=92.66  E-value=0.47  Score=27.30  Aligned_cols=73  Identities=12%  Similarity=0.097  Sum_probs=38.4

Q ss_pred             HHHHHCCCCCCCCCHHHHHHHH----HHHHCCCEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCEEEECCEE
Q ss_conf             3221100112122104899999----998629601047521233221135403653156454566451167378831114
Q gi|254780899|r  141 YKGIAAVKLNANIEDIGKAIQR----YAHSERYSVVEVFCGHGIGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPML  216 (273)
Q Consensus       141 ~~~i~~ikpG~~~~ei~~a~~~----~~~~~g~~~~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~~~le~GMV~aiEP~i  216 (273)
                      +.+-+.+|||++..||...++.    .+...|+.   ...+--+|+++-   .+...+.|..++..+|+.|-|+-|+-|+
T Consensus       137 ~~~q~~ikpg~~~~~i~~~ie~~~r~l~~~~~l~---~GiAFPt~iSiN---~~AAHYTPn~gD~~vL~~gDVVKID~Gv  210 (435)
T PTZ00053        137 RYAQSFIKPGISLIDMTDRIEKKTKELIEKDGLK---RGWAFPTGCSLN---HCAAHYTPNTGDKTVLTYDDVMKVDFGT  210 (435)
T ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCCCCCC---CEEEECCCCCCCCEEECCCCEEEEEEEE
T ss_conf             9999865799829999999999999985245612---450046645410---1013158898986174279989997411


Q ss_pred             ECC
Q ss_conf             437
Q gi|254780899|r  217 NVG  219 (273)
Q Consensus       217 ~~~  219 (273)
                      .+.
T Consensus       211 HVD  213 (435)
T PTZ00053        211 HVN  213 (435)
T ss_pred             EEC
T ss_conf             136


No 57 
>TIGR00501 met_pdase_II methionine aminopeptidase, type II; InterPro: IPR002468   Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This group of metallopeptidases belong to MEROPS peptidase family M24 (clan MG), subfamily M24A.   Methionine aminopeptidase (3.4.11.18 from EC) (MAP) is responsible for the removal of the amino-terminal (initiator) methionine from nascent eukaryotic cytosolic and cytoplasmic prokaryotic proteins if the penultimate amino acid is small and uncharged. All MAP studied to date are monomeric proteins that require cobalt ions for activity. Two subfamilies of MAP enzymes are known to exist , . While being evolutionary related, they only share a limited amount of sequence similarity mostly clustered around the residues shown, in the Escherichia coli MAP , to be involved in cobalt-binding. The first family consists of enzymes from prokaryotes as well as eukaryotic MAP-1, while the second group (IPR002467 from INTERPRO) is made up of archaeal MAP and eukaryotic MAP-2 and includes proteins which do not seem to be MAP, but that are clearly evolutionary related such as mouse proliferation-associated protein 1 and fission yeast curved DNA-binding protein. ; GO: 0004239 methionyl aminopeptidase activity, 0006508 proteolysis.
Probab=92.09  E-value=0.43  Score=27.56  Aligned_cols=132  Identities=17%  Similarity=0.165  Sum_probs=78.2

Q ss_pred             CCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC---CC
Q ss_conf             978853999999999999999999999999757998899999999999998598303443324445532344642---11
Q gi|254780899|r   10 GSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSINHV---IC   86 (273)
Q Consensus        10 ~~~~IKs~~EI~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~N~~---~~   86 (273)
                      .|++|-=.+.=+++.+--+-+.+|+..+++.+++|++-.||-..+++.+......-.... ++|.++.-.+-.+.   ..
T Consensus       112 ~A~TV~l~~~ddky~~L~~A~~dAl~~~i~~~~~~v~v~eiG~~I~e~i~syeveinGet-Yg~kP~~NL~GHs~~rY~~  190 (327)
T TIGR00501       112 TAITVDLGDQDDKYKELVKAAKDALYTAIKEIRAGVEVGEIGKAIEEVIESYEVEINGET-YGVKPISNLTGHSMARYLL  190 (327)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHCCEEEEECCCC-CCCCCCCCCCCCCCCHHHH
T ss_conf             478850688701589999999999887775006981260020776653221357765720-1433422273564001543


Q ss_pred             CC---CC-----CCCCCCCCEEEEEEEEEEE-EEECCCCCCCCCCCCCCC-CCHH-HHHHHHHHHHH
Q ss_conf             12---12-----2220013405799787665-300023111233344443-2103-67787765432
Q gi|254780899|r   87 HG---IP-----SNKQLREGDIVNVDVTYVV-NGWHGDSSRMYPVGKIKR-AAER-ILQVTYESLYK  142 (273)
Q Consensus        87 H~---~p-----~d~~l~~GD~v~iD~g~~~-~GY~~D~~RT~~~G~~~~-~~~~-l~~~~~~a~~~  142 (273)
                      |.   +|     +...|..||+|-|+.++.= -||..|...+.++--..+ ++.+ .+..+++.+..
T Consensus       191 H~G~SiPn~~~~~~~~leeG~~~AIEpFAt~G~G~V~~~~~~~iY~~l~~DrpvrPtL~~Ar~lL~~  257 (327)
T TIGR00501       191 HAGLSIPNVKERDTTKLEEGDVVAIEPFATDGVGLVTDGGEVEIYKFLAEDRPVRPTLKSARKLLKK  257 (327)
T ss_pred             CCCCCCEEEECCCCCEEECCCEEEECCCCCCCEEEEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             5895000342798745102578884366768745651288610122105688967335899998767


No 58 
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase; InterPro: IPR010141   This entry represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis, which represent a second clade of the enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP..
Probab=81.73  E-value=4  Score=21.09  Aligned_cols=60  Identities=12%  Similarity=0.198  Sum_probs=39.6

Q ss_pred             EEEEECCCCCC--CCCC---------CCCCCCCHHHHHHHHHHHHHHHHC---CCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             65300023111--2333---------444432103677877654322110---0112122104899999998629
Q gi|254780899|r  108 VVNGWHGDSSR--MYPV---------GKIKRAAERILQVTYESLYKGIAA---VKLNANIEDIGKAIQRYAHSER  168 (273)
Q Consensus       108 ~~~GY~~D~~R--T~~~---------G~~~~~~~~l~~~~~~a~~~~i~~---ikpG~~~~ei~~a~~~~~~~~g  168 (273)
                      .+|-||||.||  ||=-         ++.....+..|+-.+...+..-..   -|| +++-|+.-.+.+++++.|
T Consensus       218 VlDTYWSDHCRHTTFET~l~~v~~~~skf~~~~~~~y~~Y~~~r~~l~~~nln~k~-v~LMDmATI~~kylkk~G  291 (1279)
T TIGR01857       218 VLDTYWSDHCRHTTFETELKEVTIEDSKFSKQLKKAYEDYLAMREELGRENLNEKP-VSLMDMATIVAKYLKKNG  291 (1279)
T ss_pred             EECCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCHHHHCCCC-CCCHHHHHHHHHHHHHCC
T ss_conf             43266578851575443440476486422137899898999988762221110478-620035778878765268


No 59 
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase; InterPro: IPR011895   The oxidative decarboxylation of pyruvate to acetyl-CoA, a central step in energy metabolism, can occur by two different mechanisms . In mitochondria and aerobic bacteria this reaction is catalysed by the multienzyme complex pyruvate dehydrogenase using NAD as electron acceptor. In anaerobic organisms, however, this reaction is reversibly catalysed by a single enzyme using either ferrodoxin or flavodoxin as the electron acceptor.   Pyruvate:ferrodoxin/flavodoxin reductases (PFORs) in this entry occur in both obligately and facultatively anaerobic bacteria and also some eukaryotic microorganisms. These proteins are single-chain enzymes containing a thiamin pyrophosphate cofactor for the cleavage of carbon-carbon bonds next to a carbonyl group, and iron-sulphur clusters for electron transfer. The Desulfovibrio africanus enzyme is currently the only PFOR whose three dimensional structure is known , . It is a homodimer where each subunit contains one thiamin pyrophosphate cofactor and two ferrodoxin-like 4Fe-S clusters and an atypical 4Fe-S cluster. Each monomer is composed of seven domains - domains I, II and VI make intersubunit contacts, while domains III, IV and V are located at the suface of the dimer, and domain VII forms a long arm extending over the other subunit. The cofactor is bound at the interface of domains I and VI and is proximal to the atypical 4Fe-S bound by domain VI, while the ferrodoxin-like 4Fe-S clusters are bound by domain V. Comparison of this enzyme with the multi-chain PFORs shows a correspondance between the domains in this enzyme and the subunits of the multi-chain enzymes.; GO: 0005506 iron ion binding, 0016903 oxidoreductase activity acting on the aldehyde or oxo group of donors, 0006118 electron transport.
Probab=69.49  E-value=4.6  Score=20.71  Aligned_cols=49  Identities=20%  Similarity=0.289  Sum_probs=33.3

Q ss_pred             ECCCCEEEECCEEECCCCCCEECCCCCEEE--ECCCCEEEEEEEEEEEC--CCCCEECCCCCCCCCC
Q ss_conf             116737883111443777625646886688--33787167844218984--7985765267988676
Q gi|254780899|r  204 FQEGMVFTIEPMLNVGGSSAKVLSDGWTAV--TRDRSLSAQYEHTIGIT--KAGCEIFTLSPNNLGQ  266 (273)
Q Consensus       204 le~GMV~aiEP~i~~~~~~~~~~~d~w~~~--~~~g~~~~~~Ed~vlVT--~~G~E~LT~~p~~l~~  266 (273)
                      +.|.||.+|     +         |+-..-  .....|+|-|||+|=-|  +-|.|.|.-.|+++.+
T Consensus       373 ~~PamvkaV-----F---------DNL~~ers~~K~~FTvGI~DDVT~TSL~~dn~~~~~~~~~~~~  425 (1194)
T TIGR02176       373 FTPAMVKAV-----F---------DNLEAERSAPKNHFTVGIDDDVTKTSLPVDNETLDLTPKSTIQ  425 (1194)
T ss_pred             CCCCCEEEE-----E---------ECCCCCCCCCCCCCCEEEECCCCCCCHHCCCCCCCCCCCCCEE
T ss_conf             573301322-----1---------0110223678776304444177765312178454348786168


No 60 
>TIGR01959 nuoF_fam NADH-quinone oxidoreductase, F subunit; InterPro: IPR011537   This entry describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. ; GO: 0010181 FMN binding, 0016651 oxidoreductase activity acting on NADH or NADPH, 0051287 NAD binding, 0051539 4 iron 4 sulfur cluster binding, 0006118 electron transport.
Probab=65.52  E-value=3.4  Score=21.61  Aligned_cols=130  Identities=15%  Similarity=0.172  Sum_probs=81.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC---CCCC--CCCCCC
Q ss_conf             39999999999999999999999997579988999999999999985983034433244455323---4464--211121
Q gi|254780899|r   15 YTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCT---SINH--VICHGI   89 (273)
Q Consensus        15 Ks~~EI~~~R~A~~i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~---s~N~--~~~H~~   89 (273)
                      +.++.|+-+.+-.+  -+.++++++.+..-++-.||.+.+.+...+.      .|--|||+-.-.   ..++  .-+||.
T Consensus        10 ~~~~~L~~Y~~~gr--yrgY~~l~KaL~~~~~~ddii~~VK~SGLRG------RGGAGFpTGlKWSFmPK~~sg~~pkYL   81 (420)
T TIGR01959        10 PESWTLEEYEKRGR--YRGYDALRKALEEKMSPDDIIEEVKDSGLRG------RGGAGFPTGLKWSFMPKDDSGPKPKYL   81 (420)
T ss_pred             CCCCCHHHHHHCCC--HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             88510788963487--0247999999852678125889987437987------888876434422335678788885368


Q ss_pred             --------C---CCCCCCCCEE-EEEEEEEEEEEECCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHH---HCCCCCCC
Q ss_conf             --------2---2220013405-7997876653000231112333--4444321036778776543221---10011212
Q gi|254780899|r   90 --------P---SNKQLREGDI-VNVDVTYVVNGWHGDSSRMYPV--GKIKRAAERILQVTYESLYKGI---AAVKLNAN  152 (273)
Q Consensus        90 --------p---~d~~l~~GD~-v~iD~g~~~~GY~~D~~RT~~~--G~~~~~~~~l~~~~~~a~~~~i---~~ikpG~~  152 (273)
                              |   .||.|-..++ .+|+ |..+-.|..-..+-|+.  |+.-.+.++|-.|+-||..+++   ..+.-|..
T Consensus        82 vCNADE~EPGTcKDR~lm~~~PH~LIE-Gm~IaayA~ga~~gYiYiRGEf~~~~~~l~~Ai~EA~~~G~LGkNIlGsGFD  160 (420)
T TIGR01959        82 VCNADEGEPGTCKDRDLMEFDPHQLIE-GMIIAAYAIGAKRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFD  160 (420)
T ss_pred             EEECCCCCCCCHHHHHHHHCCCCCEEH-HHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             872777977713148998628870305-7888778752531047861301678899999999999759820033788620


Q ss_pred             C
Q ss_conf             2
Q gi|254780899|r  153 I  153 (273)
Q Consensus       153 ~  153 (273)
                      +
T Consensus       161 f  161 (420)
T TIGR01959       161 F  161 (420)
T ss_pred             E
T ss_conf             5


No 61 
>TIGR02939 RpoE_Sigma70 RNA polymerase sigma factor RpoE; InterPro: IPR014286   The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes.   With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , .    This entry represents the clade of sigma factors called RpoE. These proteins are variously annotated as sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=62.74  E-value=6.2  Score=19.85  Aligned_cols=110  Identities=12%  Similarity=0.183  Sum_probs=55.0

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCCCC-----CCCCCCCCCCCCC--CCCCCCCCCCEEEEEEE
Q ss_conf             999999757998899999999999998-598303443324445-----5323446421112--12222001340579978
Q gi|254780899|r   34 LDSLTPIIKPGTTTEEIDDFVLKFGME-NNAIPATLNYRGYKK-----SCCTSINHVICHG--IPSNKQLREGDIVNVDV  105 (273)
Q Consensus        34 ~~~~~~~i~~G~se~el~~~~~~~~~~-~g~~~~~~~~~~f~~-----~~~~s~N~~~~H~--~p~d~~l~~GD~v~iD~  105 (273)
                      +.-+...|   .+..|+.+.+++.+.+ .=|.++|.|--.|-+     .|-+-+|+-|.|+  .|.+.-+..-|-=.+|.
T Consensus        35 ~~Lv~Ryv---~~~~e~~DVAQe~FvkAYRAl~~FRGdsaFYTWLyRIavNTAKNyLVaq~Rr~p~~dg~~~edAE~F~~  111 (192)
T TIGR02939        35 VSLVGRYV---RDSEEVEDVAQEAFVKAYRALASFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPTSDGVEAEDAEQFEE  111 (192)
T ss_pred             HHHHHHHH---CCHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCC
T ss_conf             99998761---481003401477899999751235551367899999999887776642479887445676043312002


Q ss_pred             EEEEEEECCCCCCCCCCCCCCCC----CHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf             76653000231112333444432----103677877654322110011212210489
Q gi|254780899|r  106 TYVVNGWHGDSSRMYPVGKIKRA----AERILQVTYESLYKGIAAVKLNANIEDIGK  158 (273)
Q Consensus       106 g~~~~GY~~D~~RT~~~G~~~~~----~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~  158 (273)
                      |        |--|-+   + +|+    .++|-+.+.+|+++.=+-+|--++..|+.-
T Consensus       112 a--------~~Lr~~---~-tPE~~ll~~el~~~v~~a~~aLPE~Lr~Ai~LREleG  156 (192)
T TIGR02939       112 A--------DALRDI---D-TPERLLLSRELEQTVNKALEALPEDLRTAITLRELEG  156 (192)
T ss_pred             C--------CCCCCC---C-CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
T ss_conf             6--------766556---6-6167999999999999998617267874544651268


No 62 
>KOG2611 consensus
Probab=62.29  E-value=5.8  Score=20.02  Aligned_cols=69  Identities=17%  Similarity=0.236  Sum_probs=38.6

Q ss_pred             CCEEEEEEEEEEEEEECCCCCCCCCCCCCC-----CCCHHHHHHHHHHH-----HHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             340579978766530002311123334444-----32103677877654-----3221100112122104899999998
Q gi|254780899|r   97 EGDIVNVDVTYVVNGWHGDSSRMYPVGKIK-----RAAERILQVTYESL-----YKGIAAVKLNANIEDIGKAIQRYAH  165 (273)
Q Consensus        97 ~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~-----~~~~~l~~~~~~a~-----~~~i~~ikpG~~~~ei~~a~~~~~~  165 (273)
                      .+|+-.+-+...|.|||+|...-|++|--+     +-.-=+.+.++++-     -..++.+|||.--.++-.|.+.++.
T Consensus       583 snD~taLvvS~aYkG~WsDLsELWFLGMQt~~G~lPLvPWLs~~AL~S~W~e~ivk~L~kVk~~tl~~nv~sAYe~~L~  661 (698)
T KOG2611         583 SNDPTALVVSIAYKGYWSDLSELWFLGMQTMCGVLPLVPWLSEFALESGWAEGIVKTLKKVKIGTLPANVKSAYEDFLS  661 (698)
T ss_pred             CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             5897127951544213651899999768987071325354048877514578999997327888748789999999999


No 63 
>TIGR00838 argH argininosuccinate lyase; InterPro: IPR009049   This entry represents argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens. ; GO: 0004056 argininosuccinate lyase activity, 0042450 arginine biosynthetic process via ornithine.
Probab=52.02  E-value=16  Score=17.14  Aligned_cols=12  Identities=17%  Similarity=0.041  Sum_probs=5.1

Q ss_pred             CCCCCEECCCCC
Q ss_conf             777625646886
Q gi|254780899|r  219 GGSSAKVLSDGW  230 (273)
Q Consensus       219 ~~~~~~~~~d~w  230 (273)
                      .+++...++|.|
T Consensus       261 ~EFgfieL~D~~  272 (469)
T TIGR00838       261 QEFGFIELPDEF  272 (469)
T ss_pred             CCCCEEEECCCE
T ss_conf             687606745732


No 64 
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase; InterPro: IPR010121   Pyruvate phosphate dikinase (PPDK, or pyruvate orthophosphate dikinase) is found in plants, bacteria and archaea. The amino acid sequence identity between bacterial and plant enzymes is high, and they are similar in sequence to other PEP-utilizing enzymes. PPDK catalyses the reversible conversion of ATP and pyruvate to AMP and PEP (phosphoenolpyruvate). In bacteria such as Clostridium symbiosum, PPDK uses Mg2+ and NH4+ ions as cofactors . The enzyme has three domains: the N- and C-terminal domains each have an active site centre that catalyses a different step in the reaction, and the middle domain has a carrier histidine residue that moves between the two active centres.   In plants, PPDK is localised predominantly in chloroplast stroma where it catalyses the rate-limiting step in the C4 photosynthetic pathway, namely the synthesis of PEP, which acts as the primary CO2 acceptor in C4 photosynthesis . PPDK activity in C4 plants is strictly regulated by light, its activity decreasing in darkness. This response is regulated by phosphorylation and dephosphorylation of the enzyme using ADP; such regulation is not seen in the bacterial form of the enzyme. PPDK is also found in C3 plants, but it is not known to have a photosynthetic role .; GO: 0050242 pyruvate phosphate dikinase activity.
Probab=49.44  E-value=20  Score=16.43  Aligned_cols=49  Identities=16%  Similarity=0.247  Sum_probs=28.4

Q ss_pred             CCCCCCCEEEEEE--EEEEEEEEC----CCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             2200134057997--876653000----231112333444432103677877654322
Q gi|254780899|r   92 NKQLREGDIVNVD--VTYVVNGWH----GDSSRMYPVGKIKRAAERILQVTYESLYKG  143 (273)
Q Consensus        92 d~~l~~GD~v~iD--~g~~~~GY~----~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~  143 (273)
                      ++.|++||+|.||  .|..|.|=.    .+++.-|--+   |...+|..++-..+..+
T Consensus       512 g~~~~EGD~isiDGsTG~iYlGe~~~~~p~~~~~f~G~---Paedelvravd~im~WA  566 (920)
T TIGR01828       512 GRVIKEGDIISIDGSTGEIYLGEVPLIEPEVSGDFEGE---PAEDELVRAVDTIMSWA  566 (920)
T ss_pred             CCEEECCEEEEEECCCCCEECCCCCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHH
T ss_conf             94774343799708606235375442166778766787---50578999999999986


No 65 
>COG4786 FlgG Flagellar basal body rod protein [Cell motility and secretion]
Probab=43.85  E-value=22  Score=16.22  Aligned_cols=32  Identities=31%  Similarity=0.396  Sum_probs=17.9

Q ss_pred             CCCCCEEEECCCCEEEEEEEEEEECCCCCEECC
Q ss_conf             468866883378716784421898479857652
Q gi|254780899|r  226 LSDGWTAVTRDRSLSAQYEHTIGITKAGCEIFT  258 (273)
Q Consensus       226 ~~d~w~~~~~~g~~~~~~Ed~vlVT~~G~E~LT  258 (273)
                      .+||-..+|+||.|.+- ++-.|||.+|+-+|.
T Consensus       107 ~~dG~~~YTR~G~F~~d-~~G~LVT~~G~~vl~  138 (265)
T COG4786         107 TPDGTIAYTRDGSFTVD-EEGQLVTSNGYPVLD  138 (265)
T ss_pred             CCCCCEEEEECCCEEEC-CCCCEEECCCCCCCC
T ss_conf             49987888527744688-998788079977457


No 66 
>pfam11149 DUF2924 Protein of unknown function (DUF2924). This bacterial family of proteins has no known function.
Probab=43.04  E-value=25  Score=15.79  Aligned_cols=39  Identities=18%  Similarity=0.136  Sum_probs=26.8

Q ss_pred             CCCEECCCCEEEECCEEECCCCCCEECCCCCEEEECCCCEEEEEEEEEEECCCCCEECCCCCCCC
Q ss_conf             66451167378831114437776256468866883378716784421898479857652679886
Q gi|254780899|r  200 SVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHTIGITKAGCEIFTLSPNNL  264 (273)
Q Consensus       200 ~~~~le~GMV~aiEP~i~~~~~~~~~~~d~w~~~~~~g~~~~~~Ed~vlVT~~G~E~LT~~p~~l  264 (273)
                      +...+.||.+|.=|   |    +                 |  .+|.|.|++||+|.=-+.=++|
T Consensus        77 ~~~~~~pGT~LvRe---w----~-----------------G--~~h~V~V~~dGf~~~G~~y~SL  115 (136)
T pfam11149        77 RDRLLVPGTRLVRE---W----K-----------------G--VEHRVTVLADGFEYEGRTYKSL  115 (136)
T ss_pred             CCCCCCCCCEEEEE---E----C-----------------C--EEEEEEEECCCEEECCCCCCCH
T ss_conf             65678998779998---8----9-----------------9--7899999579667899234669


No 67 
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family; InterPro: IPR014188   This entry represents a subfamily of the alcohol dehydrogenase, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This entry includes YhdH from Escherichia coli and YhfP from Bacillus subtilis both of which bind NADPH or NAD, but not zinc. Both proteins have been studied crystallographically for insight into function. .
Probab=41.18  E-value=27  Score=15.60  Aligned_cols=82  Identities=17%  Similarity=0.157  Sum_probs=50.7

Q ss_pred             CCCCCCCCEEEEE---EEEEEEEEECCCCCCC---CCCCCC---CCCCHHHHH-HHHHHHHHHHHCCCCC-CCC------
Q ss_conf             2220013405799---7876653000231112---333444---432103677-8776543221100112-122------
Q gi|254780899|r   91 SNKQLREGDIVNV---DVTYVVNGWHGDSSRM---YPVGKI---KRAAERILQ-VTYESLYKGIAAVKLN-ANI------  153 (273)
Q Consensus        91 ~d~~l~~GD~v~i---D~g~~~~GY~~D~~RT---~~~G~~---~~~~~~l~~-~~~~a~~~~i~~ikpG-~~~------  153 (273)
                      +|-.|++||-|++   |+|-.+.|=+|+.+|-   |++--|   |.++-.++- |-..|.-+..+.-+-| .+=      
T Consensus        74 ~dp~F~~GD~VivTGyglG~~H~GGysqyaRVp~dWlVpLP~glsl~eAM~~GTAGfTAaL~V~aLe~~Gl~~P~~GpVl  153 (330)
T TIGR02823        74 EDPRFRPGDEVIVTGYGLGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLLTPEDGPVL  153 (330)
T ss_pred             CCCCCCCCCEEEEEEECCCCCCCCCCEEEEEECHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
T ss_conf             88775788718997402456515762235673323101588988988999860077899999999997268888888788


Q ss_pred             -----CHHHHHHHHHHHHCCCEEC
Q ss_conf             -----1048999999986296010
Q gi|254780899|r  154 -----EDIGKAIQRYAHSERYSVV  172 (273)
Q Consensus       154 -----~ei~~a~~~~~~~~g~~~~  172 (273)
                           +-|...+=+.+.+.||.++
T Consensus       154 VTGAtGGVGS~Av~~L~~lGY~V~  177 (330)
T TIGR02823       154 VTGATGGVGSLAVAILSKLGYEVV  177 (330)
T ss_pred             EECCCCCHHHHHHHHHHHCCCEEE
T ss_conf             706778778999999983797699


No 68 
>PRK01490 tig trigger factor; Provisional
Probab=39.00  E-value=29  Score=15.38  Aligned_cols=21  Identities=24%  Similarity=0.495  Sum_probs=9.0

Q ss_pred             CCCCCCCCCEEEEEEEEEEEE
Q ss_conf             222200134057997876653
Q gi|254780899|r   90 PSNKQLREGDIVNVDVTYVVN  110 (273)
Q Consensus        90 p~d~~l~~GD~v~iD~g~~~~  110 (273)
                      |.++..+.||.|.+|+-+..+
T Consensus       153 ~~e~~~~~gD~v~id~~~~~d  173 (435)
T PRK01490        153 PVERPAENGDRVTIDFVGSID  173 (435)
T ss_pred             CCCHHHCCCCEEEEEEEEEEC
T ss_conf             654021269879999898766


No 69 
>PRK09854 cmtB putative mannitol phosphotransferase subunit EIIA; Provisional
Probab=38.76  E-value=29  Score=15.36  Aligned_cols=82  Identities=9%  Similarity=0.050  Sum_probs=41.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCE-EEEEEEEEEEEEECCCCCCCCCC-CCCC-CCCH-HHHHHHHHHHH-HHHHCCCCCCC
Q ss_conf             2344642111212222001340-57997876653000231112333-4444-3210-36778776543-22110011212
Q gi|254780899|r   78 CTSINHVICHGIPSNKQLREGD-IVNVDVTYVVNGWHGDSSRMYPV-GKIK-RAAE-RILQVTYESLY-KGIAAVKLNAN  152 (273)
Q Consensus        78 ~~s~N~~~~H~~p~d~~l~~GD-~v~iD~g~~~~GY~~D~~RT~~~-G~~~-~~~~-~l~~~~~~a~~-~~i~~ikpG~~  152 (273)
                      -.+.+=++||..|.+.+++.|= ++.+.-+..+.+- -|-.+-+++ .-.+ +.+. -+.+.+.=..+ ..++.++--.+
T Consensus        58 vi~~giAlpHa~p~~gv~k~g~sl~~lk~pV~F~~~-~~~V~~i~~laa~d~~~Hl~~L~~L~~l~~~~~~~~~l~~a~~  136 (147)
T PRK09854         58 ILAPGVAMPHARPECGALKTGMSLTLLEQGVYFPGN-DEPIKLLIGLSAADADSHIGAIQALSELLCEEEILEQLLTASS  136 (147)
T ss_pred             EEECCEEECCCCCCCCCCCCEEEEEEECCCEECCCC-CCCEEEEEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
T ss_conf             983885603368667960011699995787361799-9646999999968879999999999999809899999997899


Q ss_pred             CCHHHHHH
Q ss_conf             21048999
Q gi|254780899|r  153 IEDIGKAI  160 (273)
Q Consensus       153 ~~ei~~a~  160 (273)
                      -.||.+.+
T Consensus       137 ~~ei~~ii  144 (147)
T PRK09854        137 EKQLADII  144 (147)
T ss_pred             HHHHHHHH
T ss_conf             99999998


No 70 
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=37.10  E-value=31  Score=15.19  Aligned_cols=42  Identities=19%  Similarity=0.140  Sum_probs=26.9

Q ss_pred             CCEEEEEEEEEEEEEECC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             340579978766530002-3111233344443210367787765432211001121
Q gi|254780899|r   97 EGDIVNVDVTYVVNGWHG-DSSRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNA  151 (273)
Q Consensus        97 ~GD~v~iD~g~~~~GY~~-D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i~~ikpG~  151 (273)
                      +=|+|.-|..+.+.|+++ |+.|.+-             .+..|++-+-++++++-
T Consensus       102 k~DVV~SDaaP~~SG~~~iDh~Rs~d-------------Lv~~aL~ia~~vL~~~G  144 (192)
T TIGR00438       102 KVDVVMSDAAPNISGIWDIDHLRSID-------------LVELALDIAKEVLKPKG  144 (192)
T ss_pred             EEEEEEECCCCCCCCCCCCCHHHHHH-------------HHHHHHHHHHHHHHCCC
T ss_conf             37789852688878987543443799-------------99999999999861589


No 71 
>pfam02287 Dehydratase_SU Dehydratase small subunit. This family contains the small subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances.
Probab=36.55  E-value=31  Score=15.13  Aligned_cols=43  Identities=16%  Similarity=0.220  Sum_probs=27.1

Q ss_pred             HHHHHHHHHH---HHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHCCC
Q ss_conf             9999999999---999999999757998899-999999999998598
Q gi|254780899|r   21 ENIRSACNVV---ARCLDSLTPIIKPGTTTE-EIDDFVLKFGMENNA   63 (273)
Q Consensus        21 ~~~R~A~~i~---~~~~~~~~~~i~~G~se~-el~~~~~~~~~~~g~   63 (273)
                      ..+|+|++++   +.-+-++.+.+||+.|+. ||.+.+.+...+.++
T Consensus        69 ~Nf~RAAELt~vPD~rvLeiYnaLRP~RStk~ELl~iA~eLe~~Y~A  115 (136)
T pfam02287        69 RNFRRAAELTAVPDDRVLEIYNALRPYRSTKQELLAIADELETKYHA  115 (136)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             98999886106986999999996288834099999999999998696


No 72 
>COG1894 NuoF NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]
Probab=33.86  E-value=7.7  Score=19.22  Aligned_cols=109  Identities=16%  Similarity=0.149  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC---CCCCCCCC-----------CCCCCC
Q ss_conf             9999999999975799889999999999999859830344332444553234---46421112-----------122220
Q gi|254780899|r   29 VVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTS---INHVICHG-----------IPSNKQ   94 (273)
Q Consensus        29 i~~~~~~~~~~~i~~G~se~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s---~N~~~~H~-----------~p~d~~   94 (273)
                      ++...++.+.+.++ .|+-.+|.+.+.+...+.      .+-.|||+-.-.|   .+..--||           .-.||.
T Consensus        29 ~a~ggy~~l~kal~-~m~p~~II~~Vk~SGLRG------RGGAGFpTGlKWsfm~k~~~~~kylvcNADE~ePGTfkDR~  101 (424)
T COG1894          29 LARGGYEGLRKALT-EMGPDEIIEEVKESGLRG------RGGAGFPTGLKWSFMPKATSDQKYLVCNADEGEPGTFKDRL  101 (424)
T ss_pred             HHCCCHHHHHHHHH-HCCHHHHHHHHHHCCCCC------CCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCHH
T ss_conf             85474999999998-659899999998717777------78777877752110124788964899848989975221378


Q ss_pred             CCCCEEEEEEEEEEEEEECCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             0134057997876653000231112333--4444321036778776543221
Q gi|254780899|r   95 LREGDIVNVDVTYVVNGWHGDSSRMYPV--GKIKRAAERILQVTYESLYKGI  144 (273)
Q Consensus        95 l~~GD~v~iD~g~~~~GY~~D~~RT~~~--G~~~~~~~~l~~~~~~a~~~~i  144 (273)
                      |-++|+-.+==|..+.+|..-.++.|+.  |+...+.+++.++..+|..+++
T Consensus       102 ime~dPH~LIEGm~IA~yA~gA~~~YiYiRgEy~~a~~~l~~AI~eA~~~Gl  153 (424)
T COG1894         102 IMEGDPHLLIEGMIIAAYAVGATKGYIYIRGEYPEAIERLQKAIEEAYAAGL  153 (424)
T ss_pred             HHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCC
T ss_conf             7705947888889999998445336899733309999999999999998085


No 73 
>pfam08007 Cupin_4 Cupin superfamily protein. This family contains many hypothetical proteins that belong to the cupin superfamily.
Probab=33.70  E-value=28  Score=15.46  Aligned_cols=49  Identities=24%  Similarity=0.316  Sum_probs=37.2

Q ss_pred             CCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             2200134057997876653000231112333444432103677877654
Q gi|254780899|r   92 NKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESL  140 (273)
Q Consensus        92 d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~  140 (273)
                      +-+|++||++.|=-|.-.+|..-+-+-|+.+|=-.+...++.....+.+
T Consensus       178 d~vLepGD~LYiPpG~~H~g~a~~~s~~~SvGfrap~~~el~~~~~d~l  226 (320)
T pfam08007       178 DFVLEPGDMLYLPRGFIHQGVALDDSLHYSVGFRAPTAAELLSSFLDYL  226 (320)
T ss_pred             EEEECCCCEEEECCCCCCCCCCCCCCEEEEECEECCCHHHHHHHHHHHH
T ss_conf             8997688879858998644302888358881212798899999999999


No 74 
>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; InterPro: IPR012690    This entry represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway..
Probab=32.90  E-value=20  Score=16.50  Aligned_cols=23  Identities=17%  Similarity=0.192  Sum_probs=10.9

Q ss_pred             CCCCCCHH---HHHHHHHHHHHHCCC
Q ss_conf             57998899---999999999998598
Q gi|254780899|r   41 IKPGTTTE---EIDDFVLKFGMENNA   63 (273)
Q Consensus        41 i~~G~se~---el~~~~~~~~~~~g~   63 (273)
                      =.|.||-.   +|....-..-...|.
T Consensus        30 ~yP~~tieDAY~iq~~WV~~K~A~Gr   55 (271)
T TIGR02312        30 RYPEITIEDAYRIQRAWVALKLAEGR   55 (271)
T ss_pred             HCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             35404223578999999998872488


No 75 
>pfam03881 Fructosamin_kin Fructosamine kinase. This family includes eukaryotic fructosamine-3-kinase enzymes. The family also includes bacterial members that have not been characterized but probably have a similar or identical function.
Probab=31.92  E-value=37  Score=14.64  Aligned_cols=32  Identities=22%  Similarity=0.301  Sum_probs=16.9

Q ss_pred             CEEEECCCCCCCCCCEECCCCEEEECCEEECCC
Q ss_conf             036531564545664511673788311144377
Q gi|254780899|r  188 PEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGG  220 (273)
Q Consensus       188 P~i~~~~~~~~~~~~~le~GMV~aiEP~i~~~~  220 (273)
                      |.+.|. +...++...-..|...-|+|.+|.+.
T Consensus       187 PsLlHG-DLW~GN~~~~~~G~p~liDPA~yyG~  218 (287)
T pfam03881       187 PSLLHG-DLWSGNAAFTADGEPVIFDPACYYGD  218 (287)
T ss_pred             CCEEEC-CCCCCCEEECCCCCEEEECCHHCCCC
T ss_conf             300225-53565255847998789754311577


No 76 
>pfam09657 Cas_Csx8 CRISPR-associated protein Csx8 (Cas_Csx8). Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry describes proteins of unknown function which are encoded in the midst of a cas gene operon.
Probab=30.40  E-value=39  Score=14.48  Aligned_cols=42  Identities=24%  Similarity=0.332  Sum_probs=30.5

Q ss_pred             EECCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHH
Q ss_conf             853999999999999999999999999757-9988999999999
Q gi|254780899|r   13 NIYTPEELENIRSACNVVARCLDSLTPIIK-PGTTTEEIDDFVL   55 (273)
Q Consensus        13 ~IKs~~EI~~~R~A~~i~~~~~~~~~~~i~-~G~se~el~~~~~   55 (273)
                      .=.|+++|..+.+-.. +..+|+.+...++ -|-...|+-..+.
T Consensus        81 ~efs~E~ik~I~ekm~-aNtilKKvF~KikfdgeNkeEiL~lI~  123 (441)
T pfam09657        81 KEFTEEIIKSINEKLS-ANTVMKKVFGKIKFDGTNKDEILDLID  123 (441)
T ss_pred             CCCCHHHHHHHHHHHH-HCHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             4258999999998730-146999997404667889999999998


No 77 
>KOG1511 consensus
Probab=30.21  E-value=40  Score=14.46  Aligned_cols=23  Identities=9%  Similarity=0.092  Sum_probs=9.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             44321036778776543221100
Q gi|254780899|r  125 IKRAAERILQVTYESLYKGIAAV  147 (273)
Q Consensus       125 ~~~~~~~l~~~~~~a~~~~i~~i  147 (273)
                      .++-.+.+|+++-+.-..+...+
T Consensus       257 fPevi~~i~~aid~is~ea~~il  279 (397)
T KOG1511         257 FPEVIKAIFDAIDEISLEAVWIL  279 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             35889999999999999999997


No 78 
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=29.44  E-value=41  Score=14.37  Aligned_cols=63  Identities=16%  Similarity=0.213  Sum_probs=26.6

Q ss_pred             CEEEEEEEEEEEEEECCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             405799787665300023111233344----4432103677877654322110011212210489999999862
Q gi|254780899|r   98 GDIVNVDVTYVVNGWHGDSSRMYPVGK----IKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSE  167 (273)
Q Consensus        98 GD~v~iD~g~~~~GY~~D~~RT~~~G~----~~~~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~  167 (273)
                      |.++.+|+|-.  |..++-.|-....-    .+...+++.++..   +  ...+.+.....++..+++.+++.+
T Consensus       301 g~~~~lDfGmv--G~L~~~~r~~l~~l~~a~~~~D~~~va~~~~---~--~g~v~~~~~~~~l~~~i~~~~~~~  367 (540)
T PRK04750        301 PRYIALDFGIV--GSLNKEDKRYLAENFLAFFNRDYRRVAELHV---E--SGWVPPDTRVEELEFAIRAVCEPI  367 (540)
T ss_pred             CCEEEEEEEEE--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--HCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             74788740132--1389999999999999999405999999999---9--589998888799999999999986


No 79 
>pfam07305 DUF1454 Protein of unknown function (DUF1454). This family consists of several Enterobacterial sequences of around 200 residues in length which are often known as YiiQ proteins. The function of this family is unknown.
Probab=29.17  E-value=41  Score=14.34  Aligned_cols=74  Identities=15%  Similarity=0.165  Sum_probs=47.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEC
Q ss_conf             43210367787765432211001121221048999999986296010475212332211354036531564545664511
Q gi|254780899|r  126 KRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSFHEKPEILHFYDPLYPSVGTFQ  205 (273)
Q Consensus       126 ~~~~~~l~~~~~~a~~~~i~~ikpG~~~~ei~~a~~~~~~~~g~~~~~~~~GHgiGl~~hE~P~i~~~~~~~~~~~~~le  205 (273)
                      .++++..-+.+.+-+.+.+...-|-.+.....+.+++.+.+..-   ..|..|-+|---    +|..      +   .=+
T Consensus       114 ~~e~k~~r~~a~~Ym~Alir~F~P~ls~eQs~~~l~~lL~~gk~---~~~y~~~~GAiR----Yvva------d---~ge  177 (200)
T pfam07305       114 GPEQKAAKAKALEYMAALIRHFTPTLSQAQSQQKLQNLLTAGKG---KRYYSHTEGAIR----YIVA------D---SGE  177 (200)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC---CCCEECCCCCEE----EEEE------C---CCC
T ss_conf             85789999999999999999708757989999999999984899---865011467169----9996------1---898


Q ss_pred             CCCEEEECCE
Q ss_conf             6737883111
Q gi|254780899|r  206 EGMVFTIEPM  215 (273)
Q Consensus       206 ~GMV~aiEP~  215 (273)
                      .|++|+|||.
T Consensus       178 kglTFAVEPI  187 (200)
T pfam07305       178 KGLTFAIEPI  187 (200)
T ss_pred             CEEEEEEEEE
T ss_conf             5158885126


No 80 
>KOG1527 consensus
Probab=28.81  E-value=13  Score=17.65  Aligned_cols=75  Identities=17%  Similarity=0.269  Sum_probs=49.0

Q ss_pred             CCCCCCCEEEEEEEEE--EEEEECCCCCCCCCCCCC----CCCCHHHHHHHHHHHHHHHHCCC--CCCCC-----CHHHH
Q ss_conf             2200134057997876--653000231112333444----43210367787765432211001--12122-----10489
Q gi|254780899|r   92 NKQLREGDIVNVDVTY--VVNGWHGDSSRMYPVGKI----KRAAERILQVTYESLYKGIAAVK--LNANI-----EDIGK  158 (273)
Q Consensus        92 d~~l~~GD~v~iD~g~--~~~GY~~D~~RT~~~G~~----~~~~~~l~~~~~~a~~~~i~~ik--pG~~~-----~ei~~  158 (273)
                      -+.|+.-|+++-|--.  .+--....-+|+|+.|+.    +..|+++++...++++++...+|  -|-+.     +|=  
T Consensus       276 ~~~I~sAD~~LaDkLVp~avL~Lipp~t~lfia~KfpGna~raQ~Elh~~~l~~l~~G~~VVRLKqGDPyifGRGGEE--  353 (506)
T KOG1527         276 VRVIQSADLLLADKLVPNAVLELIPPDTRLFIAGKFPGNASRAQEELHELLLNFLEAGATVVRLKQGDPYIFGRGGEE--  353 (506)
T ss_pred             HHHHHHCCEEHHHHCCCHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCHH--
T ss_conf             998864230014210628788524899833884037883467899999999988757887999438895466678343--


Q ss_pred             HHHHHHHHCCCE
Q ss_conf             999999862960
Q gi|254780899|r  159 AIQRYAHSERYS  170 (273)
Q Consensus       159 a~~~~~~~~g~~  170 (273)
                        -.++..+||-
T Consensus       354 --~~Ff~qhGy~  363 (506)
T KOG1527         354 --MDFFQQHGYR  363 (506)
T ss_pred             --HHHHHHCCCE
T ss_conf             --2148767812


No 81 
>PRK08087 L-fuculose phosphate aldolase; Provisional
Probab=28.49  E-value=26  Score=15.64  Aligned_cols=17  Identities=29%  Similarity=0.249  Sum_probs=12.3

Q ss_pred             CCCCCCCEEEEEEEEEE
Q ss_conf             22001340579978766
Q gi|254780899|r   92 NKQLREGDIVNVDVTYV  108 (273)
Q Consensus        92 d~~l~~GD~v~iD~g~~  108 (273)
                      -..+++.|+|.+|.-+.
T Consensus        47 ~~~l~~~dlv~vd~~G~   63 (215)
T PRK08087         47 YEKLTESHIVFIDGDGK   63 (215)
T ss_pred             HHHCCHHHEEEECCCCC
T ss_conf             35588879264567787


No 82 
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=28.43  E-value=31  Score=15.21  Aligned_cols=39  Identities=21%  Similarity=0.255  Sum_probs=25.9

Q ss_pred             HCCCCCCCCCHHHHHHHHHHHHCCCEECCC--------CCCCCCCCC
Q ss_conf             100112122104899999998629601047--------521233221
Q gi|254780899|r  145 AAVKLNANIEDIGKAIQRYAHSERYSVVEV--------FCGHGIGKS  183 (273)
Q Consensus       145 ~~ikpG~~~~ei~~a~~~~~~~~g~~~~~~--------~~GHgiGl~  183 (273)
                      +..=-|+...++-.+++..+.+.|+-...|        .+||+|+++
T Consensus        56 ~~CP~gV~~~~vI~~lR~~A~~~G~~~~~~~~~~~~i~~~GhaVp~n  102 (144)
T TIGR03290        56 ERCPRDVKITDIIKALRNLAAKKGFMAKAHRKTASFVLKTGHAVPIN  102 (144)
T ss_pred             HHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             13489998899999999999985998799999999999968778865


No 83 
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=27.90  E-value=43  Score=14.20  Aligned_cols=62  Identities=11%  Similarity=0.087  Sum_probs=31.3

Q ss_pred             CCCCCCCCEEEEEEEEEEEEEECCCCCCCCCC-CCCCCC---CHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf             22200134057997876653000231112333-444432---103677877654322110011212210
Q gi|254780899|r   91 SNKQLREGDIVNVDVTYVVNGWHGDSSRMYPV-GKIKRA---AERILQVTYESLYKGIAAVKLNANIED  155 (273)
Q Consensus        91 ~d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~-G~~~~~---~~~l~~~~~~a~~~~i~~ikpG~~~~e  155 (273)
                      .++.++.-+   +.+++.+.+=-+..-|--.- |-|+-+   ....+..+..-...+++.+--|...-+
T Consensus       162 kn~~fk~~~---i~t~AFis~~~~~g~r~~~~~GlpTlE~hR~~~p~~qak~l~~~giD~VlIgd~~~s  227 (360)
T COG3589         162 KNEIFKEYN---IKTAAFISSDGAEGPRGPLYEGLPTLEAHRYVEPFVQAKDLFKTGIDDVLIGDQFPS  227 (360)
T ss_pred             HHHHHHHCC---CCEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf             889988559---745899845876776662004866168743788777899999838875996388899


No 84 
>TIGR02669 SpoIID_LytB SpoIID/LytB domain; InterPro: IPR013486    This entry describes a region which is found, typically in two or three proteins per genome, in Cyanobacteria and Firmicutes, and sporadically in other genomes. One example is SpoIID from Bacillus subtilis. Another, also from B. subtilis, is LytB which contains this region at the C-terminus. LytB is encoded immediately upstream of an amidase, the autolysin LytC, and both these proteins show considerable homology in their N-terminal regions. Genes encoding proteins in this entry do not occur in conserved neighbourhoods, and many, such as SpoIID are monocistronic. One modeling study  has suggested that SpoIID may bind DNA, but the function of these proteins is so far unknown.; GO: 0030435 sporulation.
Probab=27.70  E-value=19  Score=16.58  Aligned_cols=22  Identities=23%  Similarity=0.268  Sum_probs=14.9

Q ss_pred             EECCHHHHHHHHHHHHHHHHHHH
Q ss_conf             85399999999999999999999
Q gi|254780899|r   13 NIYTPEELENIRSACNVVARCLD   35 (273)
Q Consensus        13 ~IKs~~EI~~~R~A~~i~~~~~~   35 (273)
                      +|...+++|.|+ |..|+++.+.
T Consensus        19 Empa~wP~EALK-AQAvaARTYa   40 (323)
T TIGR02669        19 EMPASWPMEALK-AQAVAARTYA   40 (323)
T ss_pred             CCCCCHHHHHHH-HHHHHHHHHH
T ss_conf             179851899999-9899999999


No 85 
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=27.17  E-value=31  Score=15.20  Aligned_cols=76  Identities=18%  Similarity=0.207  Sum_probs=36.5

Q ss_pred             CCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC----------CCCC----CCCHHHH
Q ss_conf             2001340579978766530002311123334444321036778776543221100----------1121----2210489
Q gi|254780899|r   93 KQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAV----------KLNA----NIEDIGK  158 (273)
Q Consensus        93 ~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a~~~~i~~i----------kpG~----~~~ei~~  158 (273)
                      +.+++||.|+|.+|++=.++..+ .++..+.+...-.+++.+   ++..++...+          ..|.    +..+-..
T Consensus        61 ~~~~~GD~v~IqFGhND~~~~~~-~~~~~~~ty~~nL~~~i~---~~r~~ga~pIL~Tp~~Rr~~~~~~~~~~~~~~Y~~  136 (198)
T cd01821          61 KLIKPGDYVLIQFGHNDQKPKDP-EYTEPYTTYKEYLRRYIA---EARAKGATPILVTPVTRRTFDEGGKVEDTLGDYPA  136 (198)
T ss_pred             HHCCCCCEEEEEECCCCCCCCCC-CCCCCHHHHHHHHHHHHH---HHHHCCCEEEEECCCCCCCCCCCCEECCCCHHHHH
T ss_conf             85488988999835666788898-876868899999999999---99975998999758877644899822377267999


Q ss_pred             HHHHHHHHCCCEEC
Q ss_conf             99999986296010
Q gi|254780899|r  159 AIQRYAHSERYSVV  172 (273)
Q Consensus       159 a~~~~~~~~g~~~~  172 (273)
                      +++++.++.+-..+
T Consensus       137 a~r~vA~e~~Vp~I  150 (198)
T cd01821         137 AMRELAAEEGVPLI  150 (198)
T ss_pred             HHHHHHHHCCCCEE
T ss_conf             99999998299898


No 86 
>PRK10372 L-ascorbate-specific enzyme IIA component of PTS; Provisional
Probab=26.88  E-value=45  Score=14.08  Aligned_cols=85  Identities=13%  Similarity=0.082  Sum_probs=47.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCE-EEEEEEEEEEEE---ECCCCCCCCCCCCCCCCCHH--HHHHHHHHHH-HHHHCCCCC
Q ss_conf             2344642111212222001340-579978766530---00231112333444432103--6778776543-221100112
Q gi|254780899|r   78 CTSINHVICHGIPSNKQLREGD-IVNVDVTYVVNG---WHGDSSRMYPVGKIKRAAER--ILQVTYESLY-KGIAAVKLN  150 (273)
Q Consensus        78 ~~s~N~~~~H~~p~d~~l~~GD-~v~iD~g~~~~G---Y~~D~~RT~~~G~~~~~~~~--l~~~~~~a~~-~~i~~ikpG  150 (273)
                      ..+.+=++||+.|.+.+++.|= ++.+.-+..+++   --.++--++..-+. ..+.+  +.+.+.=.++ ..++.++--
T Consensus        59 vi~~giAiPHa~~~~gV~k~g~sll~Lk~pV~F~~~~~~pV~li~~laa~d~-~~Hl~~al~~L~~ll~d~~~~~~L~~a  137 (154)
T PRK10372         59 VIAPGLAMPHGRPEEGVKKTGFALVTLKKPLEFNHEDNDPVDILITMAAVDA-NTHQEVGIMQIVNLFEDEENFDRLRAC  137 (154)
T ss_pred             EEECCEEECCCCCCCCCCCCEEEEEEECCCEEECCCCCCCEEEEEEEEECCC-CCHHHHHHHHHHHHHCCHHHHHHHHHC
T ss_conf             9717877034773359741358999958987728989981389999996387-134999999999997499999999978


Q ss_pred             CCCCHHHHHHHHH
Q ss_conf             1221048999999
Q gi|254780899|r  151 ANIEDIGKAIQRY  163 (273)
Q Consensus       151 ~~~~ei~~a~~~~  163 (273)
                      .+..||...+.++
T Consensus       138 ~s~~Ei~~ii~k~  150 (154)
T PRK10372        138 RTEQEVLDLIDRT  150 (154)
T ss_pred             CCHHHHHHHHHHH
T ss_conf             8999999999986


No 87 
>TIGR01980 sufB FeS assembly protein SufB; InterPro: IPR010231   Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems.   The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly .   The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets.   In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen .   This entry represents SufB, which is part of the SUF system and forms a complex with SufBCD.; GO: 0005515 protein binding, 0016226 iron-sulfur cluster assembly.
Probab=26.70  E-value=34  Score=14.88  Aligned_cols=16  Identities=31%  Similarity=0.601  Sum_probs=14.0

Q ss_pred             EEEEEEEEECCCCCEE
Q ss_conf             7844218984798576
Q gi|254780899|r  241 AQYEHTIGITKAGCEI  256 (273)
Q Consensus       241 ~~~Ed~vlVT~~G~E~  256 (273)
                      -|||||++|-+.|.++
T Consensus       216 GQFErTLiIadeGa~V  231 (469)
T TIGR01980       216 GQFERTLIIADEGASV  231 (469)
T ss_pred             CCCEEEEEEEEECCEE
T ss_conf             8632588999517748


No 88 
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=26.17  E-value=26  Score=15.63  Aligned_cols=46  Identities=22%  Similarity=0.279  Sum_probs=36.5

Q ss_pred             CCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             2220013405799787665300023111233344443210367787
Q gi|254780899|r   91 SNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVT  136 (273)
Q Consensus        91 ~d~~l~~GD~v~iD~g~~~~GY~~D~~RT~~~G~~~~~~~~l~~~~  136 (273)
                      -+-++.+||++.|=-+--..||.-|-|-||.+|--++-..++..--
T Consensus       179 ~d~vlepGDiLYiPp~~~H~gvae~dc~tySvG~r~Pn~~ell~~~  224 (383)
T COG2850         179 IDEVLEPGDILYIPPGFPHYGVAEDDCMTYSVGFRAPNTRELLSGF  224 (383)
T ss_pred             HHHHHCCCCEEECCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHH
T ss_conf             4654078865423898776785544556346613487689998888


No 89 
>TIGR02870 spore_II_D stage II sporulation protein D; InterPro: IPR014225   This entry contains the stage II sporulation protein D (SpoIID), which is a protein involved in the endospore formation program. SpoIID is one of the three genes (spoIID, spoIIM and spoIIP, , , ), under the control of sigma E, that have been shown to be essential for the engulfment of the forespore by the mother cell. Their products are involved in degradation of the septal peptidoglycan - mutations in spoIID, spoIIM or spoIIP block sporulation at morphological stage II, prior to the engulfment stage. These three genes are absolutely conserved (sometimes even duplicated) in all endospore formers .
Probab=24.83  E-value=23  Score=16.00  Aligned_cols=25  Identities=28%  Similarity=0.454  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             999999999999999999999975799
Q gi|254780899|r   18 EELENIRSACNVVARCLDSLTPIIKPG   44 (273)
Q Consensus        18 ~EI~~~R~A~~i~~~~~~~~~~~i~~G   44 (273)
                      -|+|.|+ |..|+++.+. +.+++.+|
T Consensus       100 F~~EALK-AQa~aARTf~-v~~~~~~~  124 (358)
T TIGR02870       100 FEIEALK-AQAVAARTFA-VKKMVQFG  124 (358)
T ss_pred             CCHHHHH-HHHHHHHHHH-HHHHHCCC
T ss_conf             7355678-9999999999-99974378


No 90 
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=24.83  E-value=49  Score=13.83  Aligned_cols=31  Identities=19%  Similarity=0.109  Sum_probs=14.8

Q ss_pred             CCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHC
Q ss_conf             111233344443--2103677877654322110
Q gi|254780899|r  116 SSRMYPVGKIKR--AAERILQVTYESLYKGIAA  146 (273)
Q Consensus       116 ~~RT~~~G~~~~--~~~~l~~~~~~a~~~~i~~  146 (273)
                      +.-|+.+|.+.+  ..+++-+++.+|.+.++-.
T Consensus       110 V~~~v~~Gs~~E~~~l~~l~~l~~ea~~~GlPl  142 (266)
T PRK07226        110 VSVHVNVGSETEAEMLEDLGRIARECEEWGMPL  142 (266)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCE
T ss_conf             999854799837999999999999999859956


No 91 
>TIGR00337 PyrG CTP synthase; InterPro: IPR004468 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5 upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium .; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=24.17  E-value=50  Score=13.75  Aligned_cols=21  Identities=19%  Similarity=0.378  Sum_probs=10.3

Q ss_pred             CCCCCCCHHH-----HHHHHHHHHCC
Q ss_conf             1121221048-----99999998629
Q gi|254780899|r  148 KLNANIEDIG-----KAIQRYAHSER  168 (273)
Q Consensus       148 kpG~~~~ei~-----~a~~~~~~~~g  168 (273)
                      =-|-|.+||-     .|+|++-.+-|
T Consensus       149 EiGGTVGDIEs~PFLEAiRQ~~~e~G  174 (571)
T TIGR00337       149 EIGGTVGDIESLPFLEAIRQLKKEVG  174 (571)
T ss_pred             EECCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             83770000036258999999998738


No 92 
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=22.94  E-value=53  Score=13.60  Aligned_cols=30  Identities=13%  Similarity=0.232  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             999999999999975799889999999999
Q gi|254780899|r   27 CNVVARCLDSLTPIIKPGTTTEEIDDFVLK   56 (273)
Q Consensus        27 ~~i~~~~~~~~~~~i~~G~se~el~~~~~~   56 (273)
                      +.++.++-..+.+.+..|.|..||-+++.+
T Consensus        56 s~iA~dmR~~Ir~~i~~G~sd~eI~~~l~~   85 (126)
T PRK10144         56 APVAVSMRHQVYSMVAEGKSEVEIIGWMTE   85 (126)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             799999999999999869999999999998


No 93 
>TIGR03541 reg_near_HchA LuxR family transcriptional regulatory, chaperone HchA-associated. Members of this protein family belong to the LuxR transcriptional regulator family, and contain both autoinducer binding (pfam03472) and transcriptional regulator (pfam00196) domains. Members, however, occur only in a few members of the Gammaproteobacteria that have the chaperone/aminopeptidase HchA, and are always encoded by the adjacent gene.
Probab=22.19  E-value=55  Score=13.50  Aligned_cols=30  Identities=27%  Similarity=0.222  Sum_probs=20.0

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             999999757998899999999999998598
Q gi|254780899|r   34 LDSLTPIIKPGTTTEEIDDFVLKFGMENNA   63 (273)
Q Consensus        34 ~~~~~~~i~~G~se~el~~~~~~~~~~~g~   63 (273)
                      +-.+.+.+.---|..+|...+.+.....|-
T Consensus         4 lf~~l~~l~~a~t~~~l~~~l~~~~~~~Gf   33 (232)
T TIGR03541         4 LFQAVRQIEQASTLEAIQDAVREFAQNLGY   33 (232)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf             999999998489999999999999998499


No 94 
>PRK10188 DNA-binding transcriptional activator SdiA; Provisional
Probab=22.17  E-value=55  Score=13.50  Aligned_cols=27  Identities=7%  Similarity=-0.052  Sum_probs=17.2

Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             999975799889999999999999859
Q gi|254780899|r   36 SLTPIIKPGTTTEEIDDFVLKFGMENN   62 (273)
Q Consensus        36 ~~~~~i~~G~se~el~~~~~~~~~~~g   62 (273)
                      .+...+..-.++.++-..+.+.....|
T Consensus        12 ~~l~~~~~a~~~~~~~~~l~~~~~~lG   38 (240)
T PRK10188         12 TMLLRFQEMAAAEEVYHELQLQTQQLE   38 (240)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf             999999847999999999999999759


No 95 
>PRK08333 L-fuculose phosphate aldolase; Provisional
Probab=21.24  E-value=36  Score=14.72  Aligned_cols=15  Identities=7%  Similarity=0.217  Sum_probs=11.4

Q ss_pred             CCCCCCEEEEEEEEE
Q ss_conf             200134057997876
Q gi|254780899|r   93 KQLREGDIVNVDVTY  107 (273)
Q Consensus        93 ~~l~~GD~v~iD~g~  107 (273)
                      ..+++.|++.+|+-+
T Consensus        46 ~~l~~~div~vd~dG   60 (189)
T PRK08333         46 DELTPSQVAVIKLNG   60 (189)
T ss_pred             HHCCHHHEEEEECCC
T ss_conf             559768968993868


No 96 
>PRK09220 hypothetical protein; Provisional
Probab=20.99  E-value=39  Score=14.51  Aligned_cols=37  Identities=24%  Similarity=0.252  Sum_probs=20.9

Q ss_pred             CCCCCCCEEEEEEEEEE-EEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             22001340579978766-5300023111233344443210367787765
Q gi|254780899|r   92 NKQLREGDIVNVDVTYV-VNGWHGDSSRMYPVGKIKRAAERILQVTYES  139 (273)
Q Consensus        92 d~~l~~GD~v~iD~g~~-~~GY~~D~~RT~~~G~~~~~~~~l~~~~~~a  139 (273)
                      -..|++.|+|.+|+-+. ++|     .     .+|+.+. .++..+++.
T Consensus        50 ~~~l~~~Div~vd~~G~~~~~-----~-----~kPSsE~-~lH~~IYr~   87 (205)
T PRK09220         50 KGRLTEEDILLVDLAGNAVGS-----G-----RKPSAET-LLHTQLYRR   87 (205)
T ss_pred             CCCCCHHHEEEECCCCCCCCC-----C-----CCCCCCH-HHHHHHHHH
T ss_conf             100988898998178878589-----9-----8888644-999999983


No 97 
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=20.60  E-value=59  Score=13.29  Aligned_cols=30  Identities=13%  Similarity=0.300  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             999999999999975799889999999999
Q gi|254780899|r   27 CNVVARCLDSLTPIIKPGTTTEEIDDFVLK   56 (273)
Q Consensus        27 ~~i~~~~~~~~~~~i~~G~se~el~~~~~~   56 (273)
                      +.++.++-..+.+.+..|.|..||-+++.+
T Consensus        56 a~~A~dmR~~I~~~i~~G~sd~eI~~~l~~   85 (126)
T TIGR03147        56 SPIAYDLRHEVYSMVNEGKSNQQIIDFMTA   85 (126)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             199999999999999859998999999999


No 98 
>PRK06754 mtnB methylthioribulose-1-phosphate dehydratase; Reviewed
Probab=20.33  E-value=52  Score=13.64  Aligned_cols=56  Identities=20%  Similarity=0.152  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CC--CCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf             9999999999999859830344332444553234464--21--11212222001340579978766
Q gi|254780899|r   47 TEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTSINH--VI--CHGIPSNKQLREGDIVNVDVTYV  108 (273)
Q Consensus        47 e~el~~~~~~~~~~~g~~~~~~~~~~f~~~~~~s~N~--~~--~H~~p~d~~l~~GD~v~iD~g~~  108 (273)
                      +.||+...+. +.++|..++..|-.+..    .+.+.  .+  |-|. .-..|++.|+|.+|.-+.
T Consensus         8 ~eel~~v~r~-l~~rG~~~gt~GNiS~R----~~~~~~~~lITPSG~-~k~~l~~eD~v~Vd~~G~   67 (208)
T PRK06754          8 WYELSEIKKE-LATRDWFPATSGNLSIK----VSDEPLTFLVTASGK-DKRKTTPEDFLLVDHDGV   67 (208)
T ss_pred             HHHHHHHHHH-HHHCCCCCCCCCEEEEE----ECCCCEEEEEECCCC-CCCCCCHHHEEEECCCCC
T ss_conf             9999999999-99887933488888999----379970899917988-503288889888889987


Done!