RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780899|ref|YP_003065312.1| methionine aminopeptidase
[Candidatus Liberibacter asiaticus str. psy62]
(273 letters)
>gnl|CDD|29971 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and
arylamides..
Length = 238
Score = 329 bits (846), Expect = 5e-91
Identities = 122/240 (50%), Positives = 165/240 (68%), Gaps = 2/240 (0%)
Query: 20 LENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCT 79
+E +R A +VA LD L IKPG TT+E+D +F E+ A PA L Y G+ KS CT
Sbjct: 1 IEGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSICT 60
Query: 80 SINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYES 139
S+N V+CHGIP ++ L++GDIVN+DV ++G+HGDS+R + VG++ A+++++VT E+
Sbjct: 61 SVNEVVCHGIPDDRVLKDGDIVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVEVTEEA 120
Query: 140 LYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSFHEKPEILHFYDPLYP 199
LYKGI AVK I DIG AI++YA YSVV F GHGIG+ FHE+P+I ++ P
Sbjct: 121 LYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSVVREFGGHGIGRKFHEEPQIPNYGRPG-- 178
Query: 200 SVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHTIGITKAGCEIFTL 259
+ + GMVFTIEPM+N+G L DGWT VT+D SLSAQ+EHT+ IT+ G EI TL
Sbjct: 179 TGPKLKPGMVFTIEPMINLGTYEVVTLPDGWTVVTKDGSLSAQFEHTVLITEDGPEILTL 238
>gnl|CDD|30374 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 307 bits (787), Expect = 3e-84
Identities = 115/257 (44%), Positives = 158/257 (61%), Gaps = 5/257 (1%)
Query: 10 GSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLN 69
I+I TPEE+E +R A + A+ L + ++KPG TT E+D+ +F E A PA L
Sbjct: 1 MMISIKTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLG 60
Query: 70 YRGYKKSCCTSINHVICHGIPSNKQ-LREGDIVNVDVTYVVNGWHGDSSRMYPVG-KIKR 127
Y+G+ C S+N V+ HGIP +K+ L+EGDIV +DV ++G+ GD++ + VG
Sbjct: 61 YKGFPFPTCISVNEVVAHGIPGDKKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDE 120
Query: 128 AAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSFHEK 187
A+R+L+ T E+LY GI AVK A + DIG+AIQ YA S +SVV GHGIG+ HE+
Sbjct: 121 DAKRLLEATKEALYAGIEAVKPGARLGDIGRAIQEYAESRGFSVVRNLTGHGIGRELHEE 180
Query: 188 PEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLS-DGWTAVTRDRSLSAQYEHT 246
P I ++ +EGMVF IEPM+N G D WT VT+D SLSAQ+EHT
Sbjct: 181 PSIPNYGKDGTGVR--LKEGMVFAIEPMINTGSGEVVEGPSDRWTLVTKDGSLSAQFEHT 238
Query: 247 IGITKAGCEIFTLSPNN 263
+ +T+ GCEI TL P
Sbjct: 239 VIVTEDGCEILTLRPEE 255
>gnl|CDD|37949 KOG2738, KOG2738, KOG2738, Putative methionine aminopeptidase
[Posttranslational modification, protein turnover,
chaperones].
Length = 369
Score = 280 bits (717), Expect = 3e-76
Identities = 115/263 (43%), Positives = 156/263 (59%), Gaps = 3/263 (1%)
Query: 6 SRESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIP 65
S I I PE +E +R AC + LD +++PG TT+EID V +E A P
Sbjct: 108 EISSNEIKILDPEGIEGMRKACRLAREVLDYAATLVRPGVTTDEIDRAVHNAIIERGAYP 167
Query: 66 ATLNYRGYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKI 125
+ LNY G+ KS CTS+N VICHGIP ++ L +GDIVN+DVT +NG+HGD + + VG +
Sbjct: 168 SPLNYYGFPKSVCTSVNEVICHGIPDSRPLEDGDIVNIDVTVYLNGYHGDLNETFFVGNV 227
Query: 126 KRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSFH 185
A+++++VT E L K IA VK + +IG IQ++A YSVV +CGHGIG+ FH
Sbjct: 228 DEKAKKLVKVTRECLEKAIAIVKPGVSFREIGNIIQKHATKNGYSVVRSYCGHGIGRVFH 287
Query: 186 EKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEH 245
P I H+ + G + G FTIEPM+ +G D WTAVT D SAQ+EH
Sbjct: 288 CAPNIPHYAKN--KAPGVMKPGQTFTIEPMITIGTWEDITWPDDWTAVTADGKRSAQFEH 345
Query: 246 TIGITKAGCEIFTL-SPNNLGQP 267
T+ +T+ GCEI T PN+
Sbjct: 346 TLLVTETGCEILTKRLPNSPWFM 368
>gnl|CDD|144226 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 207
Score = 171 bits (435), Expect = 2e-43
Identities = 61/232 (26%), Positives = 95/232 (40%), Gaps = 26/232 (11%)
Query: 21 ENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTS 80
E +R A + A L++ I+PG T E+ + + + + +
Sbjct: 1 ELMRKAARIAAAALEAALAAIRPGVTERELAAELEEAFLARGG----ARGPAFPPIVASG 56
Query: 81 INHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESL 140
N + H IPS++ L++GD+V +DV +G+H D +R + VGK + + E+
Sbjct: 57 PNAAVPHYIPSDRVLKDGDLVLIDVGAEYDGYHSDITRTFVVGKPTPEQRELYEAVLEAQ 116
Query: 141 YKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSFH-EKPEILHFYDPLYP 199
IAAVK D+ A + Y V GHGIG H E P I+
Sbjct: 117 EAAIAAVKPGVTGGDVDAAAREVLEEGGYGVFPHGLGHGIGLDVHDEGPYIISGGSD--- 173
Query: 200 SVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHTIGITK 251
+ GMVFTIEP + GW V + E T+ +T+
Sbjct: 174 --RVLEPGMVFTIEPGI--------YFIPGWGGV--------RIEDTVLVTE 207
>gnl|CDD|29969 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation..
Length = 207
Score = 121 bits (303), Expect = 3e-28
Identities = 51/236 (21%), Positives = 90/236 (38%), Gaps = 30/236 (12%)
Query: 20 LENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCT 79
+ +R A + + + I+PG T E+ + + PA G
Sbjct: 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGGYPAGPTIVGSGARTA- 59
Query: 80 SINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYES 139
+ H P +++L+EGD+V VD+ V +G+H D +R + +G+ + + E+
Sbjct: 60 -----LPHYRPDDRRLQEGDLVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVREA 114
Query: 140 LYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEV-FCGHGIGKSFHEKPEILHFYDPLY 198
+AA++ E++ A + GHGIG HE P + D
Sbjct: 115 QEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFGHRTGHGIGLEIHEPPVLKAGDD--- 171
Query: 199 PSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHTIGITKAGC 254
+ GMVF +EP L + G + E T+ +T+ G
Sbjct: 172 ---TVLEPGMVFAVEPGLYLPG-----------------GGGVRIEDTVLVTEDGP 207
>gnl|CDD|30356 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 119 bits (298), Expect = 1e-27
Identities = 67/258 (25%), Positives = 109/258 (42%), Gaps = 38/258 (14%)
Query: 14 IYTPEELENIRSACNVVARCLDSLTPIIKPGTTT----EEIDDFVLKFGMENNAIPATLN 69
I +P E+ IR A + L++ I+PG T E++ + K G E +
Sbjct: 154 IKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGAEGPSFDTI-- 211
Query: 70 YRGYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAA 129
+ N + H PS+++LR+GD+V +D+ V NG+ D +R +P+GK
Sbjct: 212 -------VASGENAALPHYTPSDRKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQ 264
Query: 130 ERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEV-FCGHGIGK--SFHE 186
I + E+ IAA++ ++ A ++ Y + + GHG+G HE
Sbjct: 265 REIYEAVLEAQEAAIAAIRPGVTGGEVDAAARQVLEKAGYGLYFLHGTGHGVGFVLDVHE 324
Query: 187 KPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHT 246
P+ L S T + GMVF+IEP + G V E T
Sbjct: 325 HPQYLS-----PGSDTTLEPGMVFSIEPGI---------YIPGGGGVR--------IEDT 362
Query: 247 IGITKAGCEIFTLSPNNL 264
+ +T+ G E+ T P L
Sbjct: 363 VLVTEDGFEVLTRVPKEL 380
>gnl|CDD|29977 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline..
Length = 208
Score = 101 bits (253), Expect = 3e-22
Identities = 58/202 (28%), Positives = 91/202 (45%), Gaps = 24/202 (11%)
Query: 20 LENIRSACNVVARCLDSLTPIIKPGTTTEE----IDDFVLKFGMENNAIPATLNYRGYKK 75
+E +R A + + + L IKPG T E ++ F+ K G E +
Sbjct: 1 IELLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAEGPSFDT--------- 51
Query: 76 SCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQV 135
+ N + HG+PS++++ EGD+V +D + +G+ D +R VG+ + I ++
Sbjct: 52 IVASGPNSALPHGVPSDRKIEEGDLVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEI 111
Query: 136 TYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFC---GHGIGKSFHEKPEILH 192
E+ I AVK +++ KA + Y E F GHG+G HE P I
Sbjct: 112 VLEAQQAAIKAVKPGVTAKEVDKAARDVIEEAGYG--EYFIHRTGHGVGLEVHEAPYISP 169
Query: 193 FYDPLYPSVGTFQEGMVFTIEP 214
D +EGMVFTIEP
Sbjct: 170 GSD------DVLEEGMVFTIEP 185
>gnl|CDD|29973 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and
arylamides..
Length = 291
Score = 79.1 bits (195), Expect = 1e-15
Identities = 52/199 (26%), Positives = 79/199 (39%), Gaps = 18/199 (9%)
Query: 20 LENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCT 79
LE R A + + +IKPG T EI +FV E A PA
Sbjct: 1 LEKYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGAGPAF--------PVNL 52
Query: 80 SINHVICHGIPS---NKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVT 136
SIN H P+ + L+EGD+V +D V+G+ DS+ + +L+
Sbjct: 53 SINECAAHYTPNAGDDTVLKEGDVVKLDFGAHVDGYIADSAFTVDFDP---KYDDLLEAA 109
Query: 137 YESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGK-SFHEKPEILHFYD 195
E+L I + + +IG+AI+ S + + GH I + H I +
Sbjct: 110 KEALNAAIKEAGPDVRLGEIGEAIEEVIESYGFKPIRNLTGHSIERYRLHAGKSIPNVKG 169
Query: 196 PLYPSVGTFQEGMVFTIEP 214
+EG V+ IEP
Sbjct: 170 ---GEGTRLEEGDVYAIEP 185
>gnl|CDD|29972 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro..
Length = 243
Score = 62.9 bits (153), Expect = 8e-11
Identities = 47/215 (21%), Positives = 74/215 (34%), Gaps = 30/215 (13%)
Query: 20 LENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCT 79
+E +R AC++ A + +PG + E++ A A Y
Sbjct: 1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGARLA------YSYIVAA 54
Query: 80 SINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPV-GKIKRAAERILQVTYE 138
N I H + +++ L++GD+V +D G+ D +R +PV GK + +
Sbjct: 55 GSNAAILHYVHNDQPLKDGDLVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLA 114
Query: 139 SLYKGIAAVKLNANIEDIGKAIQRYAH---------------SERYSVVEVFC----GHG 179
+ IAA K + EDI R F GH
Sbjct: 115 AQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHY 174
Query: 180 IGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEP 214
+G H+ Y + GMV TIEP
Sbjct: 175 LGLDVHDVGG----YLRYLRRARPLEPGMVITIEP 205
>gnl|CDD|37625 KOG2414, KOG2414, KOG2414, Putative Xaa-Pro aminopeptidase [Amino
acid transport and metabolism].
Length = 488
Score = 55.3 bits (133), Expect = 2e-08
Identities = 60/273 (21%), Positives = 99/273 (36%), Gaps = 58/273 (21%)
Query: 14 IYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGY 73
I +P ELE +R ACN+ ++ F + A+ A L Y
Sbjct: 228 IKSPAELELMREACNIASQTFSETM--------------FGSRDFHNEAALSALLEYECR 273
Query: 74 KKSC---------CTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGK 124
++ N H + +N+ L++ ++V VD + G+ D +R +P+
Sbjct: 274 RRGADRLAYPPVVAGGKNANTIHYVRNNQLLKDDEMVLVDAGCELGGYVSDITRTWPISG 333
Query: 125 IKRAAER-----ILQVTYE--SLYKGIAAVKLNA----NIEDIGKAIQ----RYAHSERY 169
A+R +LQV E K L+ + E +G+ ++ R E
Sbjct: 334 KFSDAQRDLYEAVLQVQEECIKYCKPSNGTSLSQLFERSNELLGQELKELGIRKTDREEM 393
Query: 170 SVVEVFC----GHGIGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKV 225
E C GH +G H+ P + PL P GMV TIEP + +
Sbjct: 394 IQAEKLCPHHVGHYLGMDVHDCPTV-SRDIPLQP-------GMVITIEPGVYIPED---- 441
Query: 226 LSDGWTAVTRDRSLSAQYEHTIGITKAGCEIFT 258
R + + E + I + G E+ T
Sbjct: 442 ----DDPPEEFRGIGIRIEDDVAIGEDGPEVLT 470
>gnl|CDD|37987 KOG2776, KOG2776, KOG2776, Metallopeptidase [General function
prediction only].
Length = 398
Score = 43.1 bits (101), Expect = 8e-05
Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 14/174 (8%)
Query: 13 NIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAI---PATLN 69
I + + A +V + L S+ + +PG + EI + +E
Sbjct: 14 TIANDSVVTKYKMAGEIVNKVLKSVVELCQPGASVREICEKGDSLILEETGKIYKKEKDF 73
Query: 70 YRGYKKSCCTSINHVICHGIP----SNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKI 125
+G S+N+ +CH P ++ L+EGD+V +D+ ++G+ + VG
Sbjct: 74 EKGIAFPTSISVNNCVCHFSPLKSDADYTLKEGDVVKIDLGVHIDGFIALVAHTIVVGPA 133
Query: 126 K------RAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVE 173
R A+ I + + + +K + +AI + A S VE
Sbjct: 134 PDTPVTGRKADVIA-AAHLAAEAALRLLKPGNTNTQVTRAIVKTAASYGCKPVE 186
>gnl|CDD|37986 KOG2775, KOG2775, KOG2775, Metallopeptidase [General function
prediction only].
Length = 397
Score = 40.7 bits (95), Expect = 4e-04
Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 25/195 (12%)
Query: 4 SSSRESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTT----TEEIDDFVLKFGM 59
++ E + + +++R A + + IIKPG T E I++ K +
Sbjct: 69 TTDEEKRELERTESDIYQDLRRAAEAHRQVRKYVQSIIKPGMTMIEICETIENTTRKLIL 128
Query: 60 ENNAIPATLNYRGYKKSCCTSINHVICHGIPSNKQ---LREGDIVNVDVTYVVNGWHGDS 116
EN + A + G+ C S+NH H P+ L+ D++ +D ++G DS
Sbjct: 129 EN-GLNAGI---GFPTGC--SLNHCAAHYTPNAGDKTVLKYDDVMKIDFGTHIDGRIIDS 182
Query: 117 SRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYA-------HSERY 169
+ + V + +L E+ GI ++ + DIG+AIQ + + Y
Sbjct: 183 A--FTVA-FNPKYDPLLAAVREATNTGIKEAGIDVRLCDIGEAIQEVMESYEVEINGKTY 239
Query: 170 SV--VEVFCGHGIGK 182
V + GH I +
Sbjct: 240 QVKPIRNLNGHSIAQ 254
>gnl|CDD|37948 KOG2737, KOG2737, KOG2737, Putative metallopeptidase [General
function prediction only].
Length = 492
Score = 40.7 bits (95), Expect = 5e-04
Identities = 56/294 (19%), Positives = 109/294 (37%), Gaps = 56/294 (19%)
Query: 14 IYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGY 73
I + E+E IR A + + + ++PG +++ L + Y
Sbjct: 185 IKSSLEIEVIRYANKISSEAHIEVMRAVRPGMKEYQLESLFLHHSYSYGG----CRHLSY 240
Query: 74 KKSCCTSINHVICH----GIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPV-GKIKRA 128
C + N + H G P+++ +++GD+ D+ + + D + +PV GK
Sbjct: 241 TCICASGDNSAVLHYGHAGAPNDRTIQDGDLCLFDMGAEYHFYASDITCSFPVNGKFTAD 300
Query: 129 AERILQVTYESLYKGIAAVKLNANIEDIGK-----AIQRYAHSERYS----------VVE 173
+ + ++ + A+K D+ K ++ A +
Sbjct: 301 QKLVYNAVLDASNAVMEAMKPGVWWVDMHKLAEKVLLEHLAQMGILKGDVDEMVEARLGA 360
Query: 174 VFCGHG----IGKSFHE----KPEILHFYDPLYPSVGT---FQEGMVFTIEP-------M 215
VF HG +G H+ + +P S+ T +EGMV T+EP +
Sbjct: 361 VFMPHGLGHFLGLDVHDVGGYPEGVERPDEPGLRSLRTARHLKEGMVITVEPGCYFIDFL 420
Query: 216 LNVGGSSAKVLSDGWTAVTRDRSLSAQY--------EHTIGITKAGCEIFTLSP 261
L+ + L+D A +R + ++ E + +TK+G E T P
Sbjct: 421 LD------EALADPARAEFLNREVLQRFRGFGGVRIEDDVVVTKSGIENLTCVP 468
>gnl|CDD|73244 cd01089, PA2G4-like, Related to aminopepdidase M, this family
contains proliferation-associated protein 2G4. Family
members have been implicated in cell cycle control..
Length = 228
Score = 37.9 bits (88), Expect = 0.003
Identities = 30/168 (17%), Positives = 66/168 (39%), Gaps = 24/168 (14%)
Query: 24 RSACNVVARCLDSLTPIIKPGTTTEEI----DDFVLK-----FGMENNAIPATLNYRGYK 74
++A + + L + + PG ++ D +L+ + E +G
Sbjct: 5 KTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEELGKVYKKEKK------LEKGIA 58
Query: 75 KSCCTSINHVICHGIP----SNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVG-----KI 125
C S+N+ +CH P + L++GD+V +D+ ++G+ + VG +
Sbjct: 59 FPTCISVNNCVCHFSPLKSDATYTLKDGDVVKIDLGCHIDGYIAVVAHTIVVGAEAETPV 118
Query: 126 KRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVE 173
++ + +L + ++ DI +AIQ+ + VE
Sbjct: 119 TGKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIVDYGCTPVE 166
>gnl|CDD|29975 cd01090, Creatinase, Creatine amidinohydrolase. E.C.3.5.3.3.
Hydrolyzes creatine to sarcosine and urea..
Length = 228
Score = 34.6 bits (79), Expect = 0.028
Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 12/147 (8%)
Query: 79 TSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQVTYE 138
+ IN H +N++++ GDI++++ ++ G++ R + ++ A +I +
Sbjct: 61 SGINTDGAHNPVTNRKVQRGDILSLNCFPMIAGYYTALERTLFLDEVSDAHLKIWEANVA 120
Query: 139 SLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSFHEKPEILHFYD--- 195
+G+ +K A +DI + F G G SF + H+Y
Sbjct: 121 VHERGLELIKPGARCKDIAAELNEMYREHDLLRYRTF---GYGHSFGV---LSHYYGREA 174
Query: 196 --PLYPSVGTFQE-GMVFTIEPMLNVG 219
L + T E GMV ++EPM+ +
Sbjct: 175 GLELREDIDTVLEPGMVVSMEPMIMLP 201
>gnl|CDD|29970 cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known
as X-Pro aminopeptidase, proline aminopeptidase,
aminopeptidase P, and aminoacylproline aminopeptidase.
Catalyses release of any N-terminal amino acid,
including proline, that is linked with proline, even
from a dipeptide or tripeptide..
Length = 224
Score = 33.6 bits (77), Expect = 0.055
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 177 GHGIGK--SFHEKPEILHFYDPLYPSVGTFQEGMVFTIEP 214
GHG+G + HE P+ + P + GM+ + EP
Sbjct: 161 GHGVGSFLNVHEGPQSISPAPNNVP----LKAGMILSNEP 196
>gnl|CDD|37624 KOG2413, KOG2413, KOG2413, Xaa-Pro aminopeptidase [Amino acid
transport and metabolism].
Length = 606
Score = 33.7 bits (77), Expect = 0.057
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 177 GHGIGKSF---HEKPEILHFYDPLYPSVGTFQEGMVFTIEP 214
GHG+G SF HE P + + Y S Q GMVF+IEP
Sbjct: 476 GHGVG-SFLNVHEGPIGIGY--RPYSSNFPLQAGMVFSIEP 513
>gnl|CDD|39844 KOG4645, KOG4645, KOG4645, MAPKKK (MAP kinase kinase kinase) SSK2 and
related serine/threonine protein kinases [Signal
transduction mechanisms].
Length = 1509
Score = 29.6 bits (66), Expect = 0.99
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 145 AAVKLNANIEDIGKAIQRYAHSERYSVVEVFCG 177
+AVK+ N + + +Q + Y EV G
Sbjct: 1380 SAVKIKNNAQTMPGELQSMMGTPMYMAPEVITG 1412
>gnl|CDD|48152 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin
family, alpha subunit. Chaperonins are involved in
productive folding of proteins. They share a common
general morphology, a double toroid of 2 stacked rings.
In contrast to bacterial group I chaperonins (GroEL),
each ring of the eukaryotic cytosolic chaperonin (CTT)
consists of eight different, but homologous subunits.
Their common function is to sequester nonnative proteins
inside their central cavity and promote folding by using
energy derived from ATP hydrolysis. The best studied in
vivo substrates of CTT are actin and tubulin..
Length = 527
Score = 29.0 bits (65), Expect = 1.3
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 11 SINIYTPEELENIRSACNVVARCLDSLTPIIKPGT----TTEEIDDFVLKFGMENNAI 64
+ + PE+LE IR + + + + + I+ G TT IDD LK+ +E A+
Sbjct: 243 QVVVTDPEKLEKIRQRESDITK--ERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAM 298
>gnl|CDD|143979 pfam00224, PK, Pyruvate kinase, barrel domain. This domain of the
is actually a small beta-barrel domain nested within a
larger TIM barrel. The active site is found in a cleft
between the two domains.
Length = 348
Score = 29.2 bits (66), Expect = 1.3
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 15 YTPEELENIRSACN----VVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNY 70
Y ++N+R A +VA LD+ P I+ G + D LK G + + +
Sbjct: 42 YHQSRIDNVREAEEKLGGLVAIALDTKGPEIRTGLFKDGKKDIELKAGDK---FLVSTDP 98
Query: 71 RGYKKSCCTSINHVICHGIPSNKQLREGDIVNVD 104
YK + +V + K + G I+ VD
Sbjct: 99 -AYKGAGDKEKIYVDYKNLT--KDVSPGGIILVD 129
>gnl|CDD|39825 KOG4625, KOG4625, KOG4625, Notch signaling protein Neuralized, Nuez
domain [Signal transduction mechanisms].
Length = 595
Score = 28.5 bits (63), Expect = 2.4
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 86 CHGIP-SNKQLREGDIVNVDVTYVVNGWHG 114
C I SN+ LR G++ V++ + GW G
Sbjct: 128 CDAITFSNRPLRIGELFLVEIEKIERGWSG 157
>gnl|CDD|37180 KOG1969, KOG1969, KOG1969, DNA replication checkpoint protein
CHL12/CTF18 [Energy production and conversion,
Replication, recombination and repair].
Length = 877
Score = 27.7 bits (61), Expect = 3.5
Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 30/197 (15%)
Query: 13 NIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLN--- 69
++Y P L +R ++A E +++ + M A LN
Sbjct: 447 DLYAPA-LRPLRPFAEIIA------FVPPSQSRLVERLNEICHRENM--RADSKALNALC 497
Query: 70 --YRGYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIK- 126
+ +SC ++ + SN R+ I + G +S ++ K
Sbjct: 498 ELTQNDIRSCINTLQFL-----ASNVDRRDSSISVKLICAKNVGAKSNSDSLFSWWKEIF 552
Query: 127 --RAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSF 184
R +R + E LY + V+L+ N E + + +YS GIGK
Sbjct: 553 QLRKKDRH-RSIDEQLYGLLNQVELHGNSERVLQGCFSIFLRLKYS------DLGIGK-P 604
Query: 185 HEKPEILHFYDPLYPSV 201
+ L F+D LY S+
Sbjct: 605 ANASDWLFFHDLLYQSM 621
>gnl|CDD|144974 pfam01579, DUF19, Domain of unknown function DUF19. This
presumed domain has no known function. It is found in
one or two copies in several Caenorhabditis elegans
proteins. It is roughly 130 amino acids long. The
domain contains 12 conserved cysteines which suggests
that the domain is an extracellular domain and that
these cysteines from six intradomain disulphide
bridges. The GO annotation for this protein indicates
that it has a function in nematode larval development
and has a positive regulation of growth rate.
Length = 159
Score = 27.4 bits (61), Expect = 4.7
Identities = 5/31 (16%), Positives = 16/31 (51%)
Query: 8 ESGSINIYTPEELENIRSACNVVARCLDSLT 38
+ +++ +EL+ + +C+ C ++L
Sbjct: 22 KMDELDMPNKDELKKFKKSCDSFKSCFETLK 52
>gnl|CDD|30411 COG0062, COG0062, Uncharacterized conserved protein [Function
unknown].
Length = 203
Score = 27.2 bits (60), Expect = 4.9
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 125 IKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHG 179
I + E+L + + NA + +AI R R V V CG G
Sbjct: 6 SAAEMMAIDDLNAEALGLPLDILMENAG-LAVARAILREYPLGRARRVLVLCGPG 59
>gnl|CDD|146808 pfam04361, DUF494, Protein of unknown function (DUF494). Members
of this family of uncharacterized proteins are often
named Smg.
Length = 155
Score = 26.8 bits (60), Expect = 7.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 6 SRESGSINIYTPEELENIRSAC 27
+ SI IYT EE E + + C
Sbjct: 62 AASDSSIRIYTDEEQEKLDTEC 83
>gnl|CDD|34759 COG5158, SEC1, Proteins involved in synaptic transmission and
general secretion, Sec1 family [Intracellular
trafficking and secretion].
Length = 582
Score = 26.4 bits (58), Expect = 7.7
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 1 MLSSSSRESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGME 60
LS R SIN +R ++ R LD +TP++ T + D G+
Sbjct: 195 KLSDEIRNELSINFDGVVSKNPLRPILIILDRSLDPITPLLHQWTYQAMLHDL---LGIN 251
Query: 61 NNAIP 65
NN +
Sbjct: 252 NNIVT 256
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.317 0.135 0.401
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,273,519
Number of extensions: 168339
Number of successful extensions: 393
Number of sequences better than 10.0: 1
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 29
Length of query: 273
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 181
Effective length of database: 4,275,709
Effective search space: 773903329
Effective search space used: 773903329
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)