RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780899|ref|YP_003065312.1| methionine aminopeptidase [Candidatus Liberibacter asiaticus str. psy62] (273 letters) >gnl|CDD|180219 PRK05716, PRK05716, methionine aminopeptidase; Validated. Length = 252 Score = 397 bits (1022), Expect = e-111 Identities = 136/255 (53%), Positives = 178/255 (69%), Gaps = 4/255 (1%) Query: 10 GSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLN 69 +I I TPEE+E +R A + A LD + P +KPG TT+E+D ++ + AIPA L Sbjct: 1 MAITIKTPEEIEKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQGAIPAPLG 60 Query: 70 YRGYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAA 129 Y G+ KS CTS+N V+CHGIPS+K L+EGDIVN+DVT + +G+HGD+SR + VG+I Sbjct: 61 YHGFPKSICTSVNEVVCHGIPSDKVLKEGDIVNIDVTVIKDGYHGDTSRTFGVGEISPED 120 Query: 130 ERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSFHEKPE 189 +R+ +VT E+LY GIAAVK A + DIG AIQ+YA +E +SVV +CGHGIG+ FHE+P+ Sbjct: 121 KRLCEVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFSVVREYCGHGIGRKFHEEPQ 180 Query: 190 ILHFYDPLYPSVGT-FQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHTIG 248 I H+ P G +EGMVFTIEPM+N G K L DGWT VT+D SLSAQYEHT+ Sbjct: 181 IPHYGA---PGDGPVLKEGMVFTIEPMINAGKREVKTLKDGWTVVTKDGSLSAQYEHTVA 237 Query: 249 ITKAGCEIFTLSPNN 263 +T+ G EI TL P Sbjct: 238 VTEDGPEILTLRPEE 252 >gnl|CDD|183819 PRK12896, PRK12896, methionine aminopeptidase; Reviewed. Length = 255 Score = 303 bits (778), Expect = 4e-83 Identities = 105/254 (41%), Positives = 156/254 (61%), Gaps = 3/254 (1%) Query: 7 RESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPA 66 +E + I +P ELE +R +VA L + ++PG TT+E+D K E+ AIP+ Sbjct: 3 QEGRGMEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEEHGAIPS 62 Query: 67 TLNYRGYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIK 126 Y G+ S C S+N + HGIP + +++GD+VN+DV+ ++G+HGD+ + VG + Sbjct: 63 PEGYYGFPGSTCISVNEEVAHGIPGPRVIKDGDLVNIDVSAYLDGYHGDTGITFAVGPVS 122 Query: 127 RAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSFHE 186 AE++ +V E+L+ GI VK + DIG+AI+ +A YSVV GHG+G+S HE Sbjct: 123 EEAEKLCRVAEEALWAGIKQVKAGRPLNDIGRAIEDFAKKNGYSVVRDLTGHGVGRSLHE 182 Query: 187 KP-EILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEH 245 +P IL + DPL P+ + GM +EP LN+G A+ L DGWT VT D+SLSAQ+EH Sbjct: 183 EPSVILTYTDPL-PNR-LLRPGMTLAVEPFLNLGAKDAETLDDGWTVVTPDKSLSAQFEH 240 Query: 246 TIGITKAGCEIFTL 259 T+ +T+ G EI T Sbjct: 241 TVVVTRDGPEILTD 254 >gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine. Length = 247 Score = 295 bits (758), Expect = 7e-81 Identities = 115/248 (46%), Positives = 160/248 (64%), Gaps = 2/248 (0%) Query: 12 INIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYR 71 I++ +P+E+E IR A + A L+ L +KPG +T+E+D F ++ A PA L Y Sbjct: 1 ISLKSPDEIEKIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLGYY 60 Query: 72 GYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAER 131 G+ S C S+N V+ HGIP K L++GDIVN+DV + +G+HGD+++ + VGKI AE+ Sbjct: 61 GFPGSVCISVNEVVIHGIPDKKVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEK 120 Query: 132 ILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSFHEKPEIL 191 +L+ T ESLYK I K I +IG AIQ+YA ++ +SVV +CGHGIG+ FHE+P+I Sbjct: 121 LLECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVVREYCGHGIGRKFHEEPQIP 180 Query: 192 HFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHTIGITK 251 ++ +EGMVFTIEPM+N G +DGWT T+D SLSAQ+EHTI IT Sbjct: 181 NYGKKFTNVR--LKEGMVFTIEPMVNTGTEEITTAADGWTVKTKDGSLSAQFEHTIVITD 238 Query: 252 AGCEIFTL 259 G EI T Sbjct: 239 NGPEILTE 246 >gnl|CDD|178703 PLN03158, PLN03158, methionine aminopeptidase; Provisional. Length = 396 Score = 260 bits (667), Expect = 2e-70 Identities = 112/254 (44%), Positives = 155/254 (61%), Gaps = 2/254 (0%) Query: 5 SSRESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAI 64 +S S+ I TPE+++ +R C + LD+ IKPG TT+EID V + + Sbjct: 128 NSDLQHSVEIKTPEQIQRMRETCRIAREVLDAAARAIKPGVTTDEIDRVVHEATIAAGGY 187 Query: 65 PATLNYRGYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGK 124 P+ LNY + KSCCTS+N VICHGIP ++L +GDIVNVDVT G HGD + + VG Sbjct: 188 PSPLNYHFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVYYKGCHGDLNETFFVGN 247 Query: 125 IKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSF 184 + A+ ++++ TYE L K IA VK ++G+ I R+A SVV+ +CGHGIG+ F Sbjct: 248 VDEASRQLVKCTYECLEKAIAIVKPGVRYREVGEVINRHATMSGLSVVKSYCGHGIGELF 307 Query: 185 HEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYE 244 H P I H+ +VG + G VFTIEPM+N G ++ DGWTAVT D SAQ+E Sbjct: 308 HCAPNIPHYARN--KAVGVMKAGQVFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFE 365 Query: 245 HTIGITKAGCEIFT 258 HT+ +T+ G E+ T Sbjct: 366 HTLLVTETGVEVLT 379 >gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional. Length = 291 Score = 245 bits (627), Expect = 8e-66 Identities = 113/255 (44%), Positives = 155/255 (60%), Gaps = 14/255 (5%) Query: 12 INIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYR 71 I I TPE++E IR AC V AR LD+L K G TT E+D+ + E NAIPA LNY Sbjct: 41 IIIKTPEQIEKIRKACQVTARILDALCEAAKEGVTTNELDELSRELHKEYNAIPAPLNYG 100 Query: 72 G--YKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAA 129 + K+ CTS+N VICHGIP++ L+ GDI+N+DV+ +V+G++GD SRM +G++ Sbjct: 101 SPPFPKTICTSLNEVICHGIPNDIPLKNGDIMNIDVSCIVDGYYGDCSRMVMIGEVSEIK 160 Query: 130 ERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSFHEKPE 189 +++ Q + E L IA +K + +IG+ I+ A +SVV+ F GHG+G FHE P Sbjct: 161 KKVCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYGFSVVDQFVGHGVGIKFHENPY 220 Query: 190 ILHFYD----PLYPSVGTFQEGMVFTIEPMLNVGGSSAKV-LSDGWTAVTRDRSLSAQYE 244 + H + PL P GM+FTIEPM+NVG + + W A T D SAQ+E Sbjct: 221 VPHHRNSSKIPLAP-------GMIFTIEPMINVGKKEGVIDPINHWEARTCDNQPSAQWE 273 Query: 245 HTIGITKAGCEIFTL 259 HTI IT+ G EI TL Sbjct: 274 HTILITETGYEILTL 288 >gnl|CDD|171806 PRK12897, PRK12897, methionine aminopeptidase; Reviewed. Length = 248 Score = 201 bits (511), Expect = 2e-52 Identities = 107/247 (43%), Positives = 143/247 (57%), Gaps = 2/247 (0%) Query: 12 INIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYR 71 I I T E++ + + ++A C + I+KPG TT+EI+ FV + ++ A Y Sbjct: 2 ITIKTKNEIDLMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGYN 61 Query: 72 GYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAER 131 GY + C S+N +CH P++ L EGDIV +D+ +NG DS+ Y VGK+ AE+ Sbjct: 62 GYPYAICASVNDEMCHAFPADVPLTEGDIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAEK 121 Query: 132 ILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSFHEKPEIL 191 +L V +LYKGI + + DIG AI+ Y +E +SV F GHGIGK HE+P I Sbjct: 122 LLLVAENALYKGIDQAVIGNRVGDIGYAIESYVANEGFSVARDFTGHGIGKEIHEEPAIF 181 Query: 192 HFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHTIGITK 251 HF QEGMV TIEP++NVG +KV +GWTA T D LSAQYEHTI ITK Sbjct: 182 HFGKQ--GQGPELQEGMVITIEPIVNVGMRYSKVDLNGWTARTMDGKLSAQYEHTIAITK 239 Query: 252 AGCEIFT 258 G I T Sbjct: 240 DGPIILT 246 >gnl|CDD|180918 PRK07281, PRK07281, methionine aminopeptidase; Reviewed. Length = 286 Score = 151 bits (382), Expect = 2e-37 Identities = 90/282 (31%), Positives = 127/282 (45%), Gaps = 40/282 (14%) Query: 12 INIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYR 71 I + + E+E + A + +A L +IKPG E++++V + E N +P + Sbjct: 2 ITLKSAREIEAMDRAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEENVLPLQIGVD 61 Query: 72 G----YKKSCCTSINHVICHGIPSNKQLREGDIVNVDV---------------------- 105 G Y + C +N + H P + L+EGD++ VD+ Sbjct: 62 GAMMDYPYATCCGLNDEVAHAFPRHYILKEGDLLKVDMVLSEPLDKSIVDVSKLNFDNVE 121 Query: 106 -----TYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAI 160 T G DS Y VG + ++ VT E++Y+GI + I DIG AI Sbjct: 122 QMKKYTESYRGGLADSCWAYAVGTPSDEVKNLMDVTKEAMYRGIEQAVVGNRIGDIGAAI 181 Query: 161 QRYAHSERYSVVEVFCGHGIGKSFHEKPEILHFYDPLYPSVG---TFQEGMVFTIEPMLN 217 Q YA S Y VV GHG+G + HE+P + P Y + G +EGMV TIEPM+N Sbjct: 182 QEYAESRGYGVVRDLVGHGVGPTMHEEPMV-----PNYGTAGRGLRLREGMVLTIEPMIN 236 Query: 218 VGGSSAKV-LSDGWTAVTRDRSLSAQYEHTIGITKAGCEIFT 258 G + GW T D LS QYEH ITK G I T Sbjct: 237 TGTWEIDTDMKTGWAHKTLDGGLSCQYEHQFVITKDGPVILT 278 >gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional. Length = 291 Score = 74.8 bits (185), Expect = 2e-14 Identities = 55/206 (26%), Positives = 87/206 (42%), Gaps = 30/206 (14%) Query: 19 ELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCC 78 ELE A + ++ + +IKPG ++ +FV E A PA C Sbjct: 1 ELEKYLEAGKIASKVREEAAKLIKPGAKLLDVAEFVENRIRELGAKPAF--------PCN 52 Query: 79 TSINHVICHGIPS---NKQLREGDIVNVDVTYVVNGWHGDSSRMYPVG----KIKRAAER 131 SIN V H PS + EGD+V +D+ V+G+ D++ +G + A+E Sbjct: 53 ISINEVAAHYTPSPGDERVFPEGDVVKLDLGAHVDGYIADTAVTVDLGGKYEDLVEASE- 111 Query: 132 ILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGK-SFHEKPEI 190 E+L I V+ ++ +IG+ I+ S + + GHG+ + H P I Sbjct: 112 ------EALEAAIEVVRPGVSVGEIGRVIEETIRSYGFKPIRNLTGHGLERYELHAGPSI 165 Query: 191 LHFYDPLYP--SVGTFQEGMVFTIEP 214 P Y +EG V+ IEP Sbjct: 166 -----PNYDEGGGVKLEEGDVYAIEP 186 Score = 32.8 bits (76), Expect = 0.10 Identities = 10/24 (41%), Positives = 15/24 (62%) Query: 235 RDRSLSAQYEHTIGITKAGCEIFT 258 L +Q EHT+ +T+ GCE+ T Sbjct: 267 VKGGLVSQAEHTVIVTEDGCEVTT 290 >gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation. Length = 295 Score = 72.9 bits (179), Expect = 7e-14 Identities = 47/201 (23%), Positives = 77/201 (38%), Gaps = 18/201 (8%) Query: 18 EELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSC 77 E E A + ++ I PG E+ +FV E A PA C Sbjct: 3 ERAEKWIEAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGAEPAF--------PC 54 Query: 78 CTSINHVICHGIPS---NKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQ 134 SIN H P ++GD+V +D+ V+G+ D++ +G + +++ Sbjct: 55 NISINECAAHFTPKAGDKTVFKDGDVVKLDLGAHVDGYIADTAITVDLGD---QYDNLVK 111 Query: 135 VTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGK-SFHEKPEILHF 193 ++LY I ++ + +IGKAIQ S + GH + H I + Sbjct: 112 AAKDALYTAIKEIRAGVRVGEIGKAIQEVIESYGVKPISNLTGHSMAPYRLHGGKSIPNV 171 Query: 194 YDPLYPSVGTFQEGMVFTIEP 214 + +EG V IEP Sbjct: 172 KE---RDTTKLEEGDVVAIEP 189 Score = 28.6 bits (64), Expect = 1.6 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%) Query: 233 VTRDRS--LSAQYEHTIGITKAGCEIFT 258 V + S AQ+EHTI + + G E+ T Sbjct: 267 VLNEISGGYVAQWEHTILVEEHGKEVTT 294 >gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional. Length = 361 Score = 57.6 bits (139), Expect = 3e-09 Identities = 55/214 (25%), Positives = 91/214 (42%), Gaps = 31/214 (14%) Query: 14 IYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEI----DDFVLKFGMENNAIPATLN 69 I TPEE+E IR AC + R + + I+ G + EI + F+ + G E + T+ Sbjct: 127 IKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKASFD-TIV 185 Query: 70 YRGYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAA 129 G++ + + HG S+K + G+ V +D + G+ D +R V +A Sbjct: 186 ASGWRGA--------LPHGKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSA 237 Query: 130 ER-----ILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVF---CGHGIG 181 E + Q+ ++ I+A++ + + A +R Y + F GH IG Sbjct: 238 ESHPLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYG--DYFGHNTGHAIG 295 Query: 182 KSFHEKPEILHFYDPLYPSVGT-FQEGMVFTIEP 214 HE P P T Q GM+ T+EP Sbjct: 296 IEVHEDPR-------FSPRDTTTLQPGMLLTVEP 322 >gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional. Length = 438 Score = 43.6 bits (103), Expect = 5e-05 Identities = 51/202 (25%), Positives = 81/202 (40%), Gaps = 40/202 (19%) Query: 82 NHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPV-GKIKRAAERILQVTYESL 140 N I H + ++R+GD+V +D G+ GD +R +PV GK A I + ESL Sbjct: 236 NGCILHYTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQREIYDIVLESL 295 Query: 141 YKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHG-----IGKSFHEKPEILH--- 192 + + +I ++ + R S +V++ G I ++ H +P +H Sbjct: 296 ETSLRLYRPGTSIREVTGEVVRIMVSG---LVKLGILKGDVDQLIAENAH-RPFFMHGLS 351 Query: 193 ------FYDPLYPSVG--------TFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRS 238 +D VG + GMV T+EP L + A V R Sbjct: 352 HWLGLDVHD-----VGVYGQDRSRILEPGMVLTVEPGLYI-APDADVPEQY-------RG 398 Query: 239 LSAQYEHTIGITKAGCEIFTLS 260 + + E I IT+ G E T S Sbjct: 399 IGIRIEDDIVITETGNENLTAS 420 >gnl|CDD|185417 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional. Length = 470 Score = 38.9 bits (91), Expect = 0.001 Identities = 31/123 (25%), Positives = 44/123 (35%), Gaps = 31/123 (25%) Query: 80 SINHVICHGIPSNKQ---LREGDIVNVDVTYVVNGWHGDSS------RMYPVGKIKRAAE 130 S+NH H P+ L D+ +D VNG D + Y + Sbjct: 216 SLNHCAAHYTPNTGDKTVLTYDDVCKLDFGTHVNGRIIDCAFTVAFNPKY---------D 266 Query: 131 RILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSV-----------VEVFCGHG 179 +LQ T ++ GI ++ + DIG AIQ S Y V + GH Sbjct: 267 PLLQATKDATNTGIKEAGIDVRLSDIGAAIQEVIES--YEVEIKGKTYPIKSIRNLNGHS 324 Query: 180 IGK 182 IG Sbjct: 325 IGP 327 >gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein. Length = 389 Score = 37.9 bits (88), Expect = 0.003 Identities = 59/265 (22%), Positives = 103/265 (38%), Gaps = 35/265 (13%) Query: 5 SSRESGSINIYT---PEELENIRSACNVVARCLDSLTPIIKPGTTTEEI----DDFVLK- 56 S ++ Y+ PE + + A + L S+ PG +I D F+++ Sbjct: 1 SGKDEQQEQAYSLSNPEVVTKYKMAGEIANNVLKSVVEACSPGAKVVDICEKGDAFIMEE 60 Query: 57 ----FGMENNAIPATLNYRGYKKSCCTSINHVICHGIP--SNKQ--LREGDIVNVDVTYV 108 F E +G C S+N+ + H P S++ L+EGD+V +D+ Sbjct: 61 TAKIFKKEKEM------EKGIAFPTCISVNNCVGHFSPLKSDQDYILKEGDVVKIDLGCH 114 Query: 109 VNGWHGDSSRMYPVGKIK------RAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQR 162 ++G+ + + VG + R A+ I + + VK + +AI + Sbjct: 115 IDGFIALVAHTFVVGVAQEEPVTGRKADVIAAAHL-AAEAALRLVKPGNTNTQVTEAINK 173 Query: 163 YAHSERYSVVEVFCGHGIGKSF--HEKPEILHFYDPLYPSVGT--FQEGMVFTIEPMLNV 218 AHS + VE H + + EK I + D T F+E V+ ++ +++ Sbjct: 174 VAHSYGCTPVEGMLSHQLKQHVIDGEKVIISNPSDSQKKDHDTAEFEENEVYAVDILVST 233 Query: 219 GGSSAKVLSDGWTAVTRDRSLSAQY 243 G AK T RD S Y Sbjct: 234 GEGKAKDADQRTTIYKRD--PSKTY 256 >gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional. Length = 406 Score = 35.1 bits (80), Expect = 0.018 Identities = 45/214 (21%), Positives = 88/214 (41%), Gaps = 37/214 (17%) Query: 14 IYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRG- 72 I +P E++ +R + + + + +I+ G T+ E+ T Y+ Sbjct: 178 IKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAEL----------------TAAYKAA 221 Query: 73 --YKKSCCTSINHVICHG-------IPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVG 123 K S H+I G IPSN + GD++ D V+G+ D +R + VG Sbjct: 222 VMSKSETHFSRFHLISVGADFSPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVG 281 Query: 124 ---KIKRAAERILQVTYESLYKGIA-AVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHG 179 +I R + ++ +E + +A VK+ + + I++ + Y+ + G+G Sbjct: 282 EPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKK-SGLPNYNRGHLGHGNG 340 Query: 180 IGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIE 213 + E P + + +F GMV ++E Sbjct: 341 VFLGLEESPFVSTH------ATESFTSGMVLSLE 368 >gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional. Length = 323 Score = 35.1 bits (80), Expect = 0.021 Identities = 43/213 (20%), Positives = 85/213 (39%), Gaps = 35/213 (16%) Query: 14 IYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRG- 72 I +P E++ +R + + + + +I+ G T+ E+ T Y+ Sbjct: 95 IKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAEL----------------TAAYKAA 138 Query: 73 --YKKSCCTSINHVICHG-------IPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVG 123 K S H+I G IPSN + GD++ D V+G+ D +R + VG Sbjct: 139 VMSKSETHFSRFHLISVGADFSPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVG 198 Query: 124 ---KIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGI 180 +I R + ++ +E + +A ++ D + + + Y+ + G+G+ Sbjct: 199 EPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGHLGHGNGV 258 Query: 181 GKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIE 213 E P + + +F GMV ++E Sbjct: 259 FLGLEESPFVSTH------ATESFTSGMVLSLE 285 >gnl|CDD|132038 TIGR02993, ectoine_eutD, ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown. Length = 391 Score = 30.6 bits (69), Expect = 0.39 Identities = 45/213 (21%), Positives = 78/213 (36%), Gaps = 23/213 (10%) Query: 14 IYTPEELENIRSACNVVARCLDSLTPIIKPGTT----TEEIDD----FVLKFGMENNAIP 65 + + E+ +R A +V + + I+PG +I D V FG + AI Sbjct: 158 VKSETEISYMRVAARIVEKMHQRIFERIEPGMRKCDLVADIYDAGIRGVDGFGGDYPAIV 217 Query: 66 ATLNYRGYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKI 125 L + + H + ++ G+ ++ +H SR +GK Sbjct: 218 PLLP---------SGADASAPHLTWDDSPMKVGEGTFFEIAGCYKRYHCPLSRTVFLGKP 268 Query: 126 KRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVV-EVFCGHGIGKSF 184 +A + E + G+ A K EDI A +A ++Y + + G+ IG S+ Sbjct: 269 TQAFLDAEKAVLEGMEAGLEAAKPGNTCEDIANAF--FAVLKKYGIHKDSRTGYPIGLSY 326 Query: 185 HEKPEILHFYDPLYPSVGT-FQEGMVFTIEPML 216 P+ L P T + GM F L Sbjct: 327 --PPDWGERTMSLRPGDNTVLKPGMTFHFMTGL 357 >gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 536 Score = 30.1 bits (68), Expect = 0.66 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 8/59 (13%) Query: 11 SINIYTPEELENIRS-ACNVVARCLDSLTPIIKPGT----TTEEIDDFVLKFGMENNAI 64 I + P +LE IR ++ + I+K G TT IDD LK+ +E A+ Sbjct: 247 QIVVDDPAKLEGIRQREADITKERIKK---ILKAGANVVLTTGGIDDMCLKYFVEAGAM 302 >gnl|CDD|132285 TIGR03241, arg_catab_astB, succinylarginine dihydrolase. Members of this family are succinylarginine dihydrolase (EC 3.5.3.23), the second of five enzymes in the arginine succinyltransferase (AST) pathway. Length = 443 Score = 29.3 bits (66), Expect = 1.2 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 7/66 (10%) Query: 6 SRESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIP 65 SRE G + + PEE + V L+ L + G +E+ F L+ M N P Sbjct: 314 SREDGKMMLVVPEECRENAA----VWAYLNEL---VAGGGPIDEVRVFDLRESMRNGGGP 366 Query: 66 ATLNYR 71 A L R Sbjct: 367 ACLRLR 372 >gnl|CDD|131471 TIGR02418, acolac_catab, acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family. Length = 539 Score = 27.8 bits (62), Expect = 3.2 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 121 PVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGI 180 P I AE I L G L A+ + +A++R + VVE F G G Sbjct: 181 PDDAIDEVAEAIQNAKLPVLLLG-----LRASSPETTEAVRRLLKKTQLPVVETFQGAGA 235 >gnl|CDD|132362 TIGR03319, YmdA_YtgF, conserved hypothetical protein YmdA/YtgF. Length = 514 Score = 27.6 bits (62), Expect = 3.8 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 14/59 (23%) Query: 143 GIAAVKLNANIE---------DIGKAIQRYAHSERYSVVEVFCGHGIGKSFHEKPEILH 192 GI A +L +++ DIGKA+ H S VE+ G + K + E PE+++ Sbjct: 342 GIMAAELGEDVKLAKRAGLLHDIGKAVD---HEVEGSHVEI--GAELAKKYKESPEVVN 395 >gnl|CDD|183344 PRK11863, PRK11863, N-acetyl-gamma-glutamyl-phosphate reductase; Provisional. Length = 313 Score = 27.4 bits (62), Expect = 4.5 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 5/30 (16%) Query: 188 PEILHF----YDPLY-PSVGTFQEGMVFTI 212 PE+ P++ PSVG F++GM+ T+ Sbjct: 183 PEMQAHAGLARRPIFTPSVGNFRQGMLVTV 212 >gnl|CDD|184178 PRK13607, PRK13607, proline dipeptidase; Provisional. Length = 443 Score = 26.8 bits (60), Expect = 5.7 Identities = 7/12 (58%), Positives = 8/12 (66%) Query: 203 TFQEGMVFTIEP 214 + GMV TIEP Sbjct: 374 VLEPGMVLTIEP 385 >gnl|CDD|178393 PLN02796, PLN02796, D-glycerate 3-kinase. Length = 347 Score = 26.6 bits (59), Expect = 7.0 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 9/32 (28%) Query: 42 KPGTTTEEIDDFVLKFGMENNAIPATLNYRGY 73 KPG + EE+ DFV ++ +PA Y+ Y Sbjct: 294 KPGMSDEEVADFVSRY------MPA---YKAY 316 >gnl|CDD|185619 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein; Provisional. Length = 2722 Score = 26.7 bits (59), Expect = 7.3 Identities = 11/70 (15%), Positives = 19/70 (27%), Gaps = 9/70 (12%) Query: 45 TTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTS---INHVICHGIP------SNKQL 95 + ++ID E N T Y Y S I + + + Sbjct: 1194 SYKKDIDQVKKNMSKERNDHLTTFEYNAYYDKATASYENIEELTTEAKGLKGEANRSTNV 1253 Query: 96 REGDIVNVDV 105 E + + V Sbjct: 1254 DELKEIKLQV 1263 >gnl|CDD|150669 pfam10022, DUF2264, Uncharacterized protein conserved in bacteria (DUF2264). Members of this family of hypothetical bacterial proteins have no known function. Length = 361 Score = 26.0 bits (58), Expect = 9.9 Identities = 5/31 (16%), Positives = 15/31 (48%) Query: 88 GIPSNKQLREGDIVNVDVTYVVNGWHGDSSR 118 G +++ + + ++ Y+ +GW+ D Sbjct: 169 GEEYDEERIDYALAKLEEWYLGDGWYRDGPG 199 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.317 0.135 0.401 Gapped Lambda K H 0.267 0.0769 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,420,868 Number of extensions: 275913 Number of successful extensions: 544 Number of sequences better than 10.0: 1 Number of HSP's gapped: 521 Number of HSP's successfully gapped: 33 Length of query: 273 Length of database: 5,994,473 Length adjustment: 92 Effective length of query: 181 Effective length of database: 4,006,537 Effective search space: 725183197 Effective search space used: 725183197 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 56 (25.3 bits)