RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780899|ref|YP_003065312.1| methionine aminopeptidase
[Candidatus Liberibacter asiaticus str. psy62]
         (273 letters)



>gnl|CDD|180219 PRK05716, PRK05716, methionine aminopeptidase; Validated.
          Length = 252

 Score =  397 bits (1022), Expect = e-111
 Identities = 136/255 (53%), Positives = 178/255 (69%), Gaps = 4/255 (1%)

Query: 10  GSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLN 69
            +I I TPEE+E +R A  + A  LD + P +KPG TT+E+D    ++  +  AIPA L 
Sbjct: 1   MAITIKTPEEIEKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQGAIPAPLG 60

Query: 70  YRGYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAA 129
           Y G+ KS CTS+N V+CHGIPS+K L+EGDIVN+DVT + +G+HGD+SR + VG+I    
Sbjct: 61  YHGFPKSICTSVNEVVCHGIPSDKVLKEGDIVNIDVTVIKDGYHGDTSRTFGVGEISPED 120

Query: 130 ERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSFHEKPE 189
           +R+ +VT E+LY GIAAVK  A + DIG AIQ+YA +E +SVV  +CGHGIG+ FHE+P+
Sbjct: 121 KRLCEVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFSVVREYCGHGIGRKFHEEPQ 180

Query: 190 ILHFYDPLYPSVGT-FQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHTIG 248
           I H+     P  G   +EGMVFTIEPM+N G    K L DGWT VT+D SLSAQYEHT+ 
Sbjct: 181 IPHYGA---PGDGPVLKEGMVFTIEPMINAGKREVKTLKDGWTVVTKDGSLSAQYEHTVA 237

Query: 249 ITKAGCEIFTLSPNN 263
           +T+ G EI TL P  
Sbjct: 238 VTEDGPEILTLRPEE 252


>gnl|CDD|183819 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
          Length = 255

 Score =  303 bits (778), Expect = 4e-83
 Identities = 105/254 (41%), Positives = 156/254 (61%), Gaps = 3/254 (1%)

Query: 7   RESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPA 66
           +E   + I +P ELE +R    +VA  L  +   ++PG TT+E+D    K   E+ AIP+
Sbjct: 3   QEGRGMEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEEHGAIPS 62

Query: 67  TLNYRGYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIK 126
              Y G+  S C S+N  + HGIP  + +++GD+VN+DV+  ++G+HGD+   + VG + 
Sbjct: 63  PEGYYGFPGSTCISVNEEVAHGIPGPRVIKDGDLVNIDVSAYLDGYHGDTGITFAVGPVS 122

Query: 127 RAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSFHE 186
             AE++ +V  E+L+ GI  VK    + DIG+AI+ +A    YSVV    GHG+G+S HE
Sbjct: 123 EEAEKLCRVAEEALWAGIKQVKAGRPLNDIGRAIEDFAKKNGYSVVRDLTGHGVGRSLHE 182

Query: 187 KP-EILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEH 245
           +P  IL + DPL P+    + GM   +EP LN+G   A+ L DGWT VT D+SLSAQ+EH
Sbjct: 183 EPSVILTYTDPL-PNR-LLRPGMTLAVEPFLNLGAKDAETLDDGWTVVTPDKSLSAQFEH 240

Query: 246 TIGITKAGCEIFTL 259
           T+ +T+ G EI T 
Sbjct: 241 TVVVTRDGPEILTD 254


>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
           Methionine aminopeptidase is a cobalt-binding enzyme.
           Bacterial and organellar examples (type I) differ from
           eukaroytic and archaeal (type II) examples in lacking a
           region of approximately 60 amino acids between the 4th
           and 5th cobalt-binding ligands. This model describes
           type I. The role of this protein in general is to
           produce the mature form of cytosolic proteins by
           removing the N-terminal methionine.
          Length = 247

 Score =  295 bits (758), Expect = 7e-81
 Identities = 115/248 (46%), Positives = 160/248 (64%), Gaps = 2/248 (0%)

Query: 12  INIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYR 71
           I++ +P+E+E IR A  + A  L+ L   +KPG +T+E+D     F  ++ A PA L Y 
Sbjct: 1   ISLKSPDEIEKIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLGYY 60

Query: 72  GYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAER 131
           G+  S C S+N V+ HGIP  K L++GDIVN+DV  + +G+HGD+++ + VGKI   AE+
Sbjct: 61  GFPGSVCISVNEVVIHGIPDKKVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEK 120

Query: 132 ILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSFHEKPEIL 191
           +L+ T ESLYK I   K    I +IG AIQ+YA ++ +SVV  +CGHGIG+ FHE+P+I 
Sbjct: 121 LLECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVVREYCGHGIGRKFHEEPQIP 180

Query: 192 HFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHTIGITK 251
           ++           +EGMVFTIEPM+N G       +DGWT  T+D SLSAQ+EHTI IT 
Sbjct: 181 NYGKKFTNVR--LKEGMVFTIEPMVNTGTEEITTAADGWTVKTKDGSLSAQFEHTIVITD 238

Query: 252 AGCEIFTL 259
            G EI T 
Sbjct: 239 NGPEILTE 246


>gnl|CDD|178703 PLN03158, PLN03158, methionine aminopeptidase; Provisional.
          Length = 396

 Score =  260 bits (667), Expect = 2e-70
 Identities = 112/254 (44%), Positives = 155/254 (61%), Gaps = 2/254 (0%)

Query: 5   SSRESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAI 64
           +S    S+ I TPE+++ +R  C +    LD+    IKPG TT+EID  V +  +     
Sbjct: 128 NSDLQHSVEIKTPEQIQRMRETCRIAREVLDAAARAIKPGVTTDEIDRVVHEATIAAGGY 187

Query: 65  PATLNYRGYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGK 124
           P+ LNY  + KSCCTS+N VICHGIP  ++L +GDIVNVDVT    G HGD +  + VG 
Sbjct: 188 PSPLNYHFFPKSCCTSVNEVICHGIPDARKLEDGDIVNVDVTVYYKGCHGDLNETFFVGN 247

Query: 125 IKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSF 184
           +  A+ ++++ TYE L K IA VK      ++G+ I R+A     SVV+ +CGHGIG+ F
Sbjct: 248 VDEASRQLVKCTYECLEKAIAIVKPGVRYREVGEVINRHATMSGLSVVKSYCGHGIGELF 307

Query: 185 HEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYE 244
           H  P I H+      +VG  + G VFTIEPM+N G    ++  DGWTAVT D   SAQ+E
Sbjct: 308 HCAPNIPHYARN--KAVGVMKAGQVFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFE 365

Query: 245 HTIGITKAGCEIFT 258
           HT+ +T+ G E+ T
Sbjct: 366 HTLLVTETGVEVLT 379


>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
          Length = 291

 Score =  245 bits (627), Expect = 8e-66
 Identities = 113/255 (44%), Positives = 155/255 (60%), Gaps = 14/255 (5%)

Query: 12  INIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYR 71
           I I TPE++E IR AC V AR LD+L    K G TT E+D+   +   E NAIPA LNY 
Sbjct: 41  IIIKTPEQIEKIRKACQVTARILDALCEAAKEGVTTNELDELSRELHKEYNAIPAPLNYG 100

Query: 72  G--YKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAA 129
              + K+ CTS+N VICHGIP++  L+ GDI+N+DV+ +V+G++GD SRM  +G++    
Sbjct: 101 SPPFPKTICTSLNEVICHGIPNDIPLKNGDIMNIDVSCIVDGYYGDCSRMVMIGEVSEIK 160

Query: 130 ERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSFHEKPE 189
           +++ Q + E L   IA +K    + +IG+ I+  A    +SVV+ F GHG+G  FHE P 
Sbjct: 161 KKVCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYGFSVVDQFVGHGVGIKFHENPY 220

Query: 190 ILHFYD----PLYPSVGTFQEGMVFTIEPMLNVGGSSAKV-LSDGWTAVTRDRSLSAQYE 244
           + H  +    PL P       GM+FTIEPM+NVG     +   + W A T D   SAQ+E
Sbjct: 221 VPHHRNSSKIPLAP-------GMIFTIEPMINVGKKEGVIDPINHWEARTCDNQPSAQWE 273

Query: 245 HTIGITKAGCEIFTL 259
           HTI IT+ G EI TL
Sbjct: 274 HTILITETGYEILTL 288


>gnl|CDD|171806 PRK12897, PRK12897, methionine aminopeptidase; Reviewed.
          Length = 248

 Score =  201 bits (511), Expect = 2e-52
 Identities = 107/247 (43%), Positives = 143/247 (57%), Gaps = 2/247 (0%)

Query: 12  INIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYR 71
           I I T  E++ +  +  ++A C   +  I+KPG TT+EI+ FV  +  ++ A      Y 
Sbjct: 2   ITIKTKNEIDLMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGYN 61

Query: 72  GYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAER 131
           GY  + C S+N  +CH  P++  L EGDIV +D+   +NG   DS+  Y VGK+   AE+
Sbjct: 62  GYPYAICASVNDEMCHAFPADVPLTEGDIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAEK 121

Query: 132 ILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGKSFHEKPEIL 191
           +L V   +LYKGI    +   + DIG AI+ Y  +E +SV   F GHGIGK  HE+P I 
Sbjct: 122 LLLVAENALYKGIDQAVIGNRVGDIGYAIESYVANEGFSVARDFTGHGIGKEIHEEPAIF 181

Query: 192 HFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLSAQYEHTIGITK 251
           HF           QEGMV TIEP++NVG   +KV  +GWTA T D  LSAQYEHTI ITK
Sbjct: 182 HFGKQ--GQGPELQEGMVITIEPIVNVGMRYSKVDLNGWTARTMDGKLSAQYEHTIAITK 239

Query: 252 AGCEIFT 258
            G  I T
Sbjct: 240 DGPIILT 246


>gnl|CDD|180918 PRK07281, PRK07281, methionine aminopeptidase; Reviewed.
          Length = 286

 Score =  151 bits (382), Expect = 2e-37
 Identities = 90/282 (31%), Positives = 127/282 (45%), Gaps = 40/282 (14%)

Query: 12  INIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYR 71
           I + +  E+E +  A + +A     L  +IKPG    E++++V +   E N +P  +   
Sbjct: 2   ITLKSAREIEAMDRAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEENVLPLQIGVD 61

Query: 72  G----YKKSCCTSINHVICHGIPSNKQLREGDIVNVDV---------------------- 105
           G    Y  + C  +N  + H  P +  L+EGD++ VD+                      
Sbjct: 62  GAMMDYPYATCCGLNDEVAHAFPRHYILKEGDLLKVDMVLSEPLDKSIVDVSKLNFDNVE 121

Query: 106 -----TYVVNGWHGDSSRMYPVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAI 160
                T    G   DS   Y VG      + ++ VT E++Y+GI    +   I DIG AI
Sbjct: 122 QMKKYTESYRGGLADSCWAYAVGTPSDEVKNLMDVTKEAMYRGIEQAVVGNRIGDIGAAI 181

Query: 161 QRYAHSERYSVVEVFCGHGIGKSFHEKPEILHFYDPLYPSVG---TFQEGMVFTIEPMLN 217
           Q YA S  Y VV    GHG+G + HE+P +     P Y + G     +EGMV TIEPM+N
Sbjct: 182 QEYAESRGYGVVRDLVGHGVGPTMHEEPMV-----PNYGTAGRGLRLREGMVLTIEPMIN 236

Query: 218 VGGSSAKV-LSDGWTAVTRDRSLSAQYEHTIGITKAGCEIFT 258
            G       +  GW   T D  LS QYEH   ITK G  I T
Sbjct: 237 TGTWEIDTDMKTGWAHKTLDGGLSCQYEHQFVITKDGPVILT 278


>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
          Length = 291

 Score = 74.8 bits (185), Expect = 2e-14
 Identities = 55/206 (26%), Positives = 87/206 (42%), Gaps = 30/206 (14%)

Query: 19  ELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCC 78
           ELE    A  + ++  +    +IKPG    ++ +FV     E  A PA          C 
Sbjct: 1   ELEKYLEAGKIASKVREEAAKLIKPGAKLLDVAEFVENRIRELGAKPAF--------PCN 52

Query: 79  TSINHVICHGIPS---NKQLREGDIVNVDVTYVVNGWHGDSSRMYPVG----KIKRAAER 131
            SIN V  H  PS    +   EGD+V +D+   V+G+  D++    +G     +  A+E 
Sbjct: 53  ISINEVAAHYTPSPGDERVFPEGDVVKLDLGAHVDGYIADTAVTVDLGGKYEDLVEASE- 111

Query: 132 ILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGK-SFHEKPEI 190
                 E+L   I  V+   ++ +IG+ I+    S  +  +    GHG+ +   H  P I
Sbjct: 112 ------EALEAAIEVVRPGVSVGEIGRVIEETIRSYGFKPIRNLTGHGLERYELHAGPSI 165

Query: 191 LHFYDPLYP--SVGTFQEGMVFTIEP 214
                P Y        +EG V+ IEP
Sbjct: 166 -----PNYDEGGGVKLEEGDVYAIEP 186



 Score = 32.8 bits (76), Expect = 0.10
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 235 RDRSLSAQYEHTIGITKAGCEIFT 258
               L +Q EHT+ +T+ GCE+ T
Sbjct: 267 VKGGLVSQAEHTVIVTEDGCEVTT 290


>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
           Methionine aminopeptidase (map) is a cobalt-binding
           enzyme. Bacterial and organellar examples (type I)
           differ from eukaroytic and archaeal (type II) examples
           in lacking a region of approximately 60 amino acids
           between the 4th and 5th cobalt-binding ligands. The role
           of this protein in general is to produce the mature
           amino end of cytosolic proteins by removing the
           N-terminal methionine. This model describes type II,
           among which the eukaryotic members typically have an
           N-terminal extension not present in archaeal members. It
           can act cotranslationally. The enzyme from rat has been
           shown to associate with translation initiation factor 2
           (IF-2) and may have a role in translational regulation.
          Length = 295

 Score = 72.9 bits (179), Expect = 7e-14
 Identities = 47/201 (23%), Positives = 77/201 (38%), Gaps = 18/201 (8%)

Query: 18  EELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRGYKKSC 77
           E  E    A  + ++        I PG    E+ +FV     E  A PA          C
Sbjct: 3   ERAEKWIEAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGAEPAF--------PC 54

Query: 78  CTSINHVICHGIPS---NKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAAERILQ 134
             SIN    H  P        ++GD+V +D+   V+G+  D++    +G      + +++
Sbjct: 55  NISINECAAHFTPKAGDKTVFKDGDVVKLDLGAHVDGYIADTAITVDLGD---QYDNLVK 111

Query: 135 VTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGIGK-SFHEKPEILHF 193
              ++LY  I  ++    + +IGKAIQ    S     +    GH +     H    I + 
Sbjct: 112 AAKDALYTAIKEIRAGVRVGEIGKAIQEVIESYGVKPISNLTGHSMAPYRLHGGKSIPNV 171

Query: 194 YDPLYPSVGTFQEGMVFTIEP 214
            +         +EG V  IEP
Sbjct: 172 KE---RDTTKLEEGDVVAIEP 189



 Score = 28.6 bits (64), Expect = 1.6
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 233 VTRDRS--LSAQYEHTIGITKAGCEIFT 258
           V  + S    AQ+EHTI + + G E+ T
Sbjct: 267 VLNEISGGYVAQWEHTILVEEHGKEVTT 294


>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
          Length = 361

 Score = 57.6 bits (139), Expect = 3e-09
 Identities = 55/214 (25%), Positives = 91/214 (42%), Gaps = 31/214 (14%)

Query: 14  IYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEI----DDFVLKFGMENNAIPATLN 69
           I TPEE+E IR AC +  R  + +   I+ G +  EI    + F+ + G E  +   T+ 
Sbjct: 127 IKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKASFD-TIV 185

Query: 70  YRGYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKIKRAA 129
             G++ +        + HG  S+K +  G+ V +D   +  G+  D +R   V     +A
Sbjct: 186 ASGWRGA--------LPHGKASDKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSA 237

Query: 130 ER-----ILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVF---CGHGIG 181
           E      + Q+  ++    I+A++     + +  A +R      Y   + F    GH IG
Sbjct: 238 ESHPLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYG--DYFGHNTGHAIG 295

Query: 182 KSFHEKPEILHFYDPLYPSVGT-FQEGMVFTIEP 214
              HE P          P   T  Q GM+ T+EP
Sbjct: 296 IEVHEDPR-------FSPRDTTTLQPGMLLTVEP 322


>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
          Length = 438

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 51/202 (25%), Positives = 81/202 (40%), Gaps = 40/202 (19%)

Query: 82  NHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPV-GKIKRAAERILQVTYESL 140
           N  I H   +  ++R+GD+V +D      G+ GD +R +PV GK   A   I  +  ESL
Sbjct: 236 NGCILHYTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQREIYDIVLESL 295

Query: 141 YKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHG-----IGKSFHEKPEILH--- 192
              +   +   +I ++   + R   S    +V++    G     I ++ H +P  +H   
Sbjct: 296 ETSLRLYRPGTSIREVTGEVVRIMVSG---LVKLGILKGDVDQLIAENAH-RPFFMHGLS 351

Query: 193 ------FYDPLYPSVG--------TFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRS 238
                  +D     VG          + GMV T+EP L +    A V           R 
Sbjct: 352 HWLGLDVHD-----VGVYGQDRSRILEPGMVLTVEPGLYI-APDADVPEQY-------RG 398

Query: 239 LSAQYEHTIGITKAGCEIFTLS 260
           +  + E  I IT+ G E  T S
Sbjct: 399 IGIRIEDDIVITETGNENLTAS 420


>gnl|CDD|185417 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
          Length = 470

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 31/123 (25%), Positives = 44/123 (35%), Gaps = 31/123 (25%)

Query: 80  SINHVICHGIPSNKQ---LREGDIVNVDVTYVVNGWHGDSS------RMYPVGKIKRAAE 130
           S+NH   H  P+      L   D+  +D    VNG   D +        Y         +
Sbjct: 216 SLNHCAAHYTPNTGDKTVLTYDDVCKLDFGTHVNGRIIDCAFTVAFNPKY---------D 266

Query: 131 RILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSV-----------VEVFCGHG 179
            +LQ T ++   GI    ++  + DIG AIQ    S  Y V           +    GH 
Sbjct: 267 PLLQATKDATNTGIKEAGIDVRLSDIGAAIQEVIES--YEVEIKGKTYPIKSIRNLNGHS 324

Query: 180 IGK 182
           IG 
Sbjct: 325 IGP 327


>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein.  Proteins
           identified by this model have been identified in a
           number of species as a nuclear (but not nucleolar)
           protein with a cell cycle dependence. Various names
           given to members of this family have included cell cycle
           protein p38-2G4, DNA-binding protein GBP16, and
           proliferation-associated protein 1. This protein is
           closely related to methionine aminopeptidase, a
           cobolt-binding protein.
          Length = 389

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 59/265 (22%), Positives = 103/265 (38%), Gaps = 35/265 (13%)

Query: 5   SSRESGSINIYT---PEELENIRSACNVVARCLDSLTPIIKPGTTTEEI----DDFVLK- 56
           S ++      Y+   PE +   + A  +    L S+     PG    +I    D F+++ 
Sbjct: 1   SGKDEQQEQAYSLSNPEVVTKYKMAGEIANNVLKSVVEACSPGAKVVDICEKGDAFIMEE 60

Query: 57  ----FGMENNAIPATLNYRGYKKSCCTSINHVICHGIP--SNKQ--LREGDIVNVDVTYV 108
               F  E          +G     C S+N+ + H  P  S++   L+EGD+V +D+   
Sbjct: 61  TAKIFKKEKEM------EKGIAFPTCISVNNCVGHFSPLKSDQDYILKEGDVVKIDLGCH 114

Query: 109 VNGWHGDSSRMYPVGKIK------RAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQR 162
           ++G+    +  + VG  +      R A+ I      +    +  VK       + +AI +
Sbjct: 115 IDGFIALVAHTFVVGVAQEEPVTGRKADVIAAAHL-AAEAALRLVKPGNTNTQVTEAINK 173

Query: 163 YAHSERYSVVEVFCGHGIGKSF--HEKPEILHFYDPLYPSVGT--FQEGMVFTIEPMLNV 218
            AHS   + VE    H + +     EK  I +  D       T  F+E  V+ ++ +++ 
Sbjct: 174 VAHSYGCTPVEGMLSHQLKQHVIDGEKVIISNPSDSQKKDHDTAEFEENEVYAVDILVST 233

Query: 219 GGSSAKVLSDGWTAVTRDRSLSAQY 243
           G   AK      T   RD   S  Y
Sbjct: 234 GEGKAKDADQRTTIYKRD--PSKTY 256


>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
          Length = 406

 Score = 35.1 bits (80), Expect = 0.018
 Identities = 45/214 (21%), Positives = 88/214 (41%), Gaps = 37/214 (17%)

Query: 14  IYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRG- 72
           I +P E++ +R +  +    +   + +I+ G T+ E+                T  Y+  
Sbjct: 178 IKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAEL----------------TAAYKAA 221

Query: 73  --YKKSCCTSINHVICHG-------IPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVG 123
              K     S  H+I  G       IPSN +   GD++  D    V+G+  D +R + VG
Sbjct: 222 VMSKSETHFSRFHLISVGADFSPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVG 281

Query: 124 ---KIKRAAERILQVTYESLYKGIA-AVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHG 179
              +I R   + ++  +E +   +A  VK+    +   + I++ +    Y+   +  G+G
Sbjct: 282 EPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKK-SGLPNYNRGHLGHGNG 340

Query: 180 IGKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIE 213
           +     E P +         +  +F  GMV ++E
Sbjct: 341 VFLGLEESPFVSTH------ATESFTSGMVLSLE 368


>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
          Length = 323

 Score = 35.1 bits (80), Expect = 0.021
 Identities = 43/213 (20%), Positives = 85/213 (39%), Gaps = 35/213 (16%)

Query: 14  IYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIPATLNYRG- 72
           I +P E++ +R +  +    +   + +I+ G T+ E+                T  Y+  
Sbjct: 95  IKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAEL----------------TAAYKAA 138

Query: 73  --YKKSCCTSINHVICHG-------IPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVG 123
              K     S  H+I  G       IPSN +   GD++  D    V+G+  D +R + VG
Sbjct: 139 VMSKSETHFSRFHLISVGADFSPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVVG 198

Query: 124 ---KIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGI 180
              +I R   + ++  +E +   +A      ++ D    + + +    Y+   +  G+G+
Sbjct: 199 EPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGHLGHGNGV 258

Query: 181 GKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIE 213
                E P +         +  +F  GMV ++E
Sbjct: 259 FLGLEESPFVSTH------ATESFTSGMVLSLE 285


>gnl|CDD|132038 TIGR02993, ectoine_eutD, ectoine utilization protein EutD.  Members
           of this family are putative peptidases or hydrolases
           similar to Xaa-Pro aminopeptidase (pfam00557). They
           belong to ectoine utilization operons, as found in
           Sinorhizobium meliloti 1021 (where it is known to be
           induced by ectoine), Mesorhizobium loti, Silicibacter
           pomeroyi, Agrobacterium tumefaciens, and Pseudomonas
           putida. The exact function is unknown.
          Length = 391

 Score = 30.6 bits (69), Expect = 0.39
 Identities = 45/213 (21%), Positives = 78/213 (36%), Gaps = 23/213 (10%)

Query: 14  IYTPEELENIRSACNVVARCLDSLTPIIKPGTT----TEEIDD----FVLKFGMENNAIP 65
           + +  E+  +R A  +V +    +   I+PG        +I D     V  FG +  AI 
Sbjct: 158 VKSETEISYMRVAARIVEKMHQRIFERIEPGMRKCDLVADIYDAGIRGVDGFGGDYPAIV 217

Query: 66  ATLNYRGYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMYPVGKI 125
             L          +  +    H    +  ++ G+    ++      +H   SR   +GK 
Sbjct: 218 PLLP---------SGADASAPHLTWDDSPMKVGEGTFFEIAGCYKRYHCPLSRTVFLGKP 268

Query: 126 KRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVV-EVFCGHGIGKSF 184
            +A     +   E +  G+ A K     EDI  A   +A  ++Y +  +   G+ IG S+
Sbjct: 269 TQAFLDAEKAVLEGMEAGLEAAKPGNTCEDIANAF--FAVLKKYGIHKDSRTGYPIGLSY 326

Query: 185 HEKPEILHFYDPLYPSVGT-FQEGMVFTIEPML 216
              P+       L P   T  + GM F     L
Sbjct: 327 --PPDWGERTMSLRPGDNTVLKPGMTFHFMTGL 357


>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit.
           Members of this family, all eukaryotic, are part of the
           group II chaperonin complex called CCT (chaperonin
           containing TCP-1) or TRiC. The archaeal equivalent group
           II chaperonin is often called the thermosome. Both are
           somewhat related to the group I chaperonin of bacterial,
           GroEL/GroES. This family consists exclusively of the CCT
           alpha chain (part of a paralogous family) from animals,
           plants, fungi, and other eukaryotes.
          Length = 536

 Score = 30.1 bits (68), Expect = 0.66
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 8/59 (13%)

Query: 11  SINIYTPEELENIRS-ACNVVARCLDSLTPIIKPGT----TTEEIDDFVLKFGMENNAI 64
            I +  P +LE IR    ++    +     I+K G     TT  IDD  LK+ +E  A+
Sbjct: 247 QIVVDDPAKLEGIRQREADITKERIKK---ILKAGANVVLTTGGIDDMCLKYFVEAGAM 302


>gnl|CDD|132285 TIGR03241, arg_catab_astB, succinylarginine dihydrolase.  Members
           of this family are succinylarginine dihydrolase (EC
           3.5.3.23), the second of five enzymes in the arginine
           succinyltransferase (AST) pathway.
          Length = 443

 Score = 29.3 bits (66), Expect = 1.2
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 7/66 (10%)

Query: 6   SRESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMENNAIP 65
           SRE G + +  PEE     +    V   L+ L   +  G   +E+  F L+  M N   P
Sbjct: 314 SREDGKMMLVVPEECRENAA----VWAYLNEL---VAGGGPIDEVRVFDLRESMRNGGGP 366

Query: 66  ATLNYR 71
           A L  R
Sbjct: 367 ACLRLR 372


>gnl|CDD|131471 TIGR02418, acolac_catab, acetolactate synthase, catabolic.
           Acetolactate synthase (EC 2.2.1.6) combines two
           molecules of pyruvate to yield 2-acetolactate with the
           release of CO2. This reaction may be involved in either
           valine biosynthesis (biosynthetic) or conversion of
           pyruvate to acetoin and possibly to 2,3-butanediol
           (catabolic). The biosynthetic type, described by
           TIGR00118, is also capable of forming
           acetohydroxybutyrate from pyruvate and 2-oxobutyrate for
           isoleucine biosynthesis. The family described here, part
           of the same larger family of thiamine
           pyrophosphate-dependent enzymes (pfam00205, pfam02776)
           is the catabolic form, generally found associated with
           in species with acetolactate decarboxylase and usually
           found in the same operon. The model may not encompass
           all catabolic acetolactate synthases, but rather one
           particular clade in the larger TPP-dependent enzyme
           family.
          Length = 539

 Score = 27.8 bits (62), Expect = 3.2
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 121 PVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGI 180
           P   I   AE I       L  G     L A+  +  +A++R     +  VVE F G G 
Sbjct: 181 PDDAIDEVAEAIQNAKLPVLLLG-----LRASSPETTEAVRRLLKKTQLPVVETFQGAGA 235


>gnl|CDD|132362 TIGR03319, YmdA_YtgF, conserved hypothetical protein YmdA/YtgF. 
          Length = 514

 Score = 27.6 bits (62), Expect = 3.8
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 14/59 (23%)

Query: 143 GIAAVKLNANIE---------DIGKAIQRYAHSERYSVVEVFCGHGIGKSFHEKPEILH 192
           GI A +L  +++         DIGKA+    H    S VE+  G  + K + E PE+++
Sbjct: 342 GIMAAELGEDVKLAKRAGLLHDIGKAVD---HEVEGSHVEI--GAELAKKYKESPEVVN 395


>gnl|CDD|183344 PRK11863, PRK11863, N-acetyl-gamma-glutamyl-phosphate reductase;
           Provisional.
          Length = 313

 Score = 27.4 bits (62), Expect = 4.5
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 5/30 (16%)

Query: 188 PEILHF----YDPLY-PSVGTFQEGMVFTI 212
           PE+         P++ PSVG F++GM+ T+
Sbjct: 183 PEMQAHAGLARRPIFTPSVGNFRQGMLVTV 212


>gnl|CDD|184178 PRK13607, PRK13607, proline dipeptidase; Provisional.
          Length = 443

 Score = 26.8 bits (60), Expect = 5.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)

Query: 203 TFQEGMVFTIEP 214
             + GMV TIEP
Sbjct: 374 VLEPGMVLTIEP 385


>gnl|CDD|178393 PLN02796, PLN02796, D-glycerate 3-kinase.
          Length = 347

 Score = 26.6 bits (59), Expect = 7.0
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 9/32 (28%)

Query: 42  KPGTTTEEIDDFVLKFGMENNAIPATLNYRGY 73
           KPG + EE+ DFV ++      +PA   Y+ Y
Sbjct: 294 KPGMSDEEVADFVSRY------MPA---YKAY 316


>gnl|CDD|185619 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
            Provisional.
          Length = 2722

 Score = 26.7 bits (59), Expect = 7.3
 Identities = 11/70 (15%), Positives = 19/70 (27%), Gaps = 9/70 (12%)

Query: 45   TTTEEIDDFVLKFGMENNAIPATLNYRGYKKSCCTS---INHVICHGIP------SNKQL 95
            +  ++ID        E N    T  Y  Y      S   I  +             +  +
Sbjct: 1194 SYKKDIDQVKKNMSKERNDHLTTFEYNAYYDKATASYENIEELTTEAKGLKGEANRSTNV 1253

Query: 96   REGDIVNVDV 105
             E   + + V
Sbjct: 1254 DELKEIKLQV 1263


>gnl|CDD|150669 pfam10022, DUF2264, Uncharacterized protein conserved in bacteria
           (DUF2264).  Members of this family of hypothetical
           bacterial proteins have no known function.
          Length = 361

 Score = 26.0 bits (58), Expect = 9.9
 Identities = 5/31 (16%), Positives = 15/31 (48%)

Query: 88  GIPSNKQLREGDIVNVDVTYVVNGWHGDSSR 118
           G   +++  +  +  ++  Y+ +GW+ D   
Sbjct: 169 GEEYDEERIDYALAKLEEWYLGDGWYRDGPG 199


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.317    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0769    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,420,868
Number of extensions: 275913
Number of successful extensions: 544
Number of sequences better than 10.0: 1
Number of HSP's gapped: 521
Number of HSP's successfully gapped: 33
Length of query: 273
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 181
Effective length of database: 4,006,537
Effective search space: 725183197
Effective search space used: 725183197
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)