BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780899|ref|YP_003065312.1| methionine aminopeptidase
[Candidatus Liberibacter asiaticus str. psy62]
         (273 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780899|ref|YP_003065312.1| methionine aminopeptidase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 273

 Score =  568 bits (1463), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 273/273 (100%), Positives = 273/273 (100%)

Query: 1   MLSSSSRESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGME 60
           MLSSSSRESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGME
Sbjct: 1   MLSSSSRESGSINIYTPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGME 60

Query: 61  NNAIPATLNYRGYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMY 120
           NNAIPATLNYRGYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMY
Sbjct: 61  NNAIPATLNYRGYKKSCCTSINHVICHGIPSNKQLREGDIVNVDVTYVVNGWHGDSSRMY 120

Query: 121 PVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGI 180
           PVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGI
Sbjct: 121 PVGKIKRAAERILQVTYESLYKGIAAVKLNANIEDIGKAIQRYAHSERYSVVEVFCGHGI 180

Query: 181 GKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLS 240
           GKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLS
Sbjct: 181 GKSFHEKPEILHFYDPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLS 240

Query: 241 AQYEHTIGITKAGCEIFTLSPNNLGQPGISPIQ 273
           AQYEHTIGITKAGCEIFTLSPNNLGQPGISPIQ
Sbjct: 241 AQYEHTIGITKAGCEIFTLSPNNLGQPGISPIQ 273


>gi|254780314|ref|YP_003064727.1| outer membrane protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 351

 Score = 26.9 bits (58), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 236 DRSLSAQYEHTIGITKAGCEIFTLSPNNLGQ 266
           D+ +S  Y H+ G+ KAG     L  + L Q
Sbjct: 175 DKMMSLSYRHSFGLLKAGLSTDLLQKDGLKQ 205


>gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 474

 Score = 25.4 bits (54), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 16  TPEELENIRSACNVVARCLDSLTPIIKPGTTTEEIDDFVLKFGMEN 61
           +PE ++NI+   +  A  +DS   ++       E  DF++ FG  N
Sbjct: 406 SPELVKNIKLQGHPQAYYMDSFDHLVSKILAIAEPGDFIIFFGAGN 451


>gi|254780904|ref|YP_003065317.1| tRNA/rRNA methyltransferase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 268

 Score = 23.5 bits (49), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 195 DPLYPSVGTFQEGMVFTIEPMLNVGGSSAKVLSDGWTAVTRDRSLS 240
           +PL+PS+   Q  ++   E M N   SS K + +  T  T+   LS
Sbjct: 149 NPLFPSLNISQAVLLMVWECMENSIVSSEKNVKEQNTPATKGELLS 194


>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 976

 Score = 22.7 bits (47), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 8/33 (24%), Positives = 20/33 (60%)

Query: 140 LYKGIAAVKLNANIEDIGKAIQRYAHSERYSVV 172
           +++ +AA     NIE +   ++R+A +  +S++
Sbjct: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.135    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,627
Number of Sequences: 1233
Number of extensions: 7227
Number of successful extensions: 18
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 5
length of query: 273
length of database: 328,796
effective HSP length: 73
effective length of query: 200
effective length of database: 238,787
effective search space: 47757400
effective search space used: 47757400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 38 (19.2 bits)