HHsearch alignment for GI: 254780900 and conserved domain: CHL00194
>CHL00194 ycf39 Ycf39; Provisional.
Probab=91.90 E-value=0.75 Score=25.98 Aligned_cols=106 Identities=15% Similarity=0.112 Sum_probs=51.2
Q ss_pred EEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCH-H---CCCHHHHHC-CCCCCEEE
Q ss_conf 6999982-5667899999999989999997399659999982685200278877102-2---078889844-88998999
Q gi|254780900|r 5 LKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYE-W---FDDPLIMAG-EADIDVFV 78 (438)
Q Consensus 5 ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~-~---~~d~~~li~-~~~IDvVV 78 (438)
T Consensus 1 M~ILV~GATG~lGr~vVr~Ll~~--------G~~--V-r~lvRnp~ka~~l~~~Gve~v~gDl~dpesl~~Al~GvdaVi 69 (319)
T CHL00194 1 MSLLVIGATGTLGRQIVRRALDE--------GYQ--V-KCLVRNLRKAAFLKEWGAELVYGDLSLPETIPPALEGITAII 69 (319)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--------CCC--E-EEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEE
T ss_conf 97999899858999999999968--------890--8-999578676323421596799942788778999965996799
Q ss_pred ECCCCCCCCHHHHHHHHHHCCEEEEEECH-HHHHHHHHHHHHHHHHCCCE-EEEECCCCCH
Q ss_conf 86488885113578888632702885041-77887689999875313966-9960564530
Q gi|254780900|r 79 ELIGGEDYPAYDAVRIALMRGCHVVTANK-ALIASHGKDLALLAQKNNAI-LNFEAAVAGG 137 (438)
Q Consensus 79 EliGg~~~pA~~~i~~AL~~GkhVVTANK-allA~~g~eL~~lA~~~gv~-l~~easV~gg 137 (438)
T Consensus 70 ~~~~~--~~~~~~--------------~~~~vd~~g~~~li~AAk~aGVkr~V~lS~lga~ 114 (319)
T CHL00194 70 DASTS--RPSDLN--------------NAYQIDLEGKLALIEAAKAAKVKRFIFFSILNAE 114 (319)
T ss_pred EECCC--CCCCCC--------------HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 94566--778862--------------0889889889999999998499889996135666