HHsearch alignment for GI: 254780900 and conserved domain: PRK04663
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=92.04 E-value=0.63 Score=26.51 Aligned_cols=87 Identities=22% Similarity=0.266 Sum_probs=46.0
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC--CCCCCCCCHHCC-C-HHHHHCCCCCCEEEE
Q ss_conf 269999825667899999999989999997399659999982685200--278877102207-8-889844889989998
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNID--RGIDCLRYEWFD-D-PLIMAGEADIDVFVE 79 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~--~~~~~~~~~~~~-d-~~~li~~~~IDvVVE 79 (438)
T Consensus 7 ~KkvlV~GlG~sG~s~a~~L~~~--------~~~~~v-~~~D~~~~~~~~~~l~~-~~~~~~g~~~~~~l--~~~d~vV~ 74 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRKT--------QPQLTV-KVIDTRETPPGQEQLPE-DVELHSGGWNQDWL--AEADLVVT 74 (438)
T ss_pred CCEEEEEEECHHHHHHHHHHHHC--------CCCCEE-EEECCCCCHHHHHHHHC-CCEEEECCCCHHHH--CCCCEEEE
T ss_conf 97499990678589999999966--------998469-99639889368876206-97697278896783--68999998
Q ss_pred CCCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 6488885113578888632702885
Q gi|254780900|r 80 LIGGEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 80 liGg~~~pA~~~i~~AL~~GkhVVT 104 (438)
T Consensus 75 S-PGI~-~~~p~~~~a~~~~i~i~~ 97 (438)
T PRK04663 75 N-PGIA-LATPEIQPVLAKGIPVVG 97 (438)
T ss_pred C-CCCC-CCCHHHHHHHHCCCCEEC
T ss_conf 9-9769-989899999986993703