HHsearch alignment for GI: 254780900 and conserved domain: PRK11154
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed.
Probab=96.16 E-value=0.067 Score=33.33 Aligned_cols=202 Identities=14% Similarity=0.116 Sum_probs=102.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC-------------CCC-C-------CCCCCHHCC
Q ss_conf 6999982566789999999998999999739965999998268520-------------027-8-------877102207
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI-------------DRG-I-------DCLRYEWFD 63 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k-------------~~~-~-------~~~~~~~~~ 63 (438)
T Consensus 310 ~kv~ViGaG~MG~gIA~~~a-------~~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~v~~g~~~~~~~~~~l~~i~~~~ 382 (706)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTA-------TKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHMTPAERDKQMALISGTT 382 (706)
T ss_pred CEEEEECCCCCCHHHHHHHH-------HHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEEEC
T ss_conf 67999864732389999999-------98698799997999999999998899999998618999899999862241004
Q ss_pred CHHHHHCCCCCCEEEECCCCCCCCH-HHHHHHHHH--CCEEEE-EECHHHHHHHHHHHHHHHHHC----CCEEEEECCCC
Q ss_conf 8889844889989998648888511-357888863--270288-504177887689999875313----96699605645
Q gi|254780900|r 64 DPLIMAGEADIDVFVELIGGEDYPA-YDAVRIALM--RGCHVV-TANKALIASHGKDLALLAQKN----NAILNFEAAVA 135 (438)
Q Consensus 64 d~~~li~~~~IDvVVEliGg~~~pA-~~~i~~AL~--~GkhVV-TANKallA~~g~eL~~lA~~~----gv~l~~easV~ 135 (438)
T Consensus 383 ~~~~~---~~~DlVIEAv--~E~~~~K~~v~~~le~~~~~~aIlAtNTSsl~--i~~la~~~~rP~r~iG~HFfnP~~~m 455 (706)
T PRK11154 383 DYRGF---KHADLVIEAV--FEDLALKQQMVADVEQNCAEHTIFASNTSSLP--IGQIAAAAARPEQVIGLHYFSPVEKM 455 (706)
T ss_pred CHHHH---CCCCEEEEEC--CCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC--HHHHHHHCCCCCEEEEEEECCCCCCC
T ss_conf 41231---5688799971--45288899999999964798858950676776--89999864784104554425774426
Q ss_pred CHHHHHH-------HHHHHHH-CCCCEEEEEEECCCHHHHEEHH-----------HCCCCCHHHHHHHHHHCCCCC-CCC
Q ss_conf 3013189-------9987641-2862034333142000000001-----------006877889988787617615-653
Q gi|254780900|r 136 GGIPIIR-------ILKNYVE-YDEINRVYGIINGTCNYILSHM-----------NNLGLSFQDCLEEARRQGYAE-GDA 195 (438)
Q Consensus 136 ggiPii~-------~l~~~l~-~~~i~~i~GIlnGT~nyIL~~m-----------~~~g~~f~~al~~Aq~lGyaE-~DP 195 (438)
T Consensus 456 ~LVEVi~g~~Ts~et~~~~~~~~~~lgK~pv~v~d~pGFi~NRil~~~~~ea~~l~~eG~~~~~ID~a~~~~G~pmGPf~ 535 (706)
T PRK11154 456 PLVEVIPHAKTSAETIATTVALAKKQGKTPIVVKDGAGFYVNRILAPYMNEAARLLLEGEPIEHIDAALVKFGFPVGPIT 535 (706)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHH
T ss_conf 42799437898389999999999975987899632374179999999999999999769999999999997599878568
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 2232117899999999999818855
Q gi|254780900|r 196 TFDINGVDSSHKIAILSAIAFGIDT 220 (438)
Q Consensus 196 ~~Di~G~Daa~Kl~ILa~~~~g~~~ 220 (438)
T Consensus 536 l~D~vGlDv~~~v~~~l~~~~g~r~ 560 (706)
T PRK11154 536 LLDEVGIDVGTKIIPILEAALGERF 560 (706)
T ss_pred HHHHHCHHHHHHHHHHHHHHHCCCC
T ss_conf 8775267889999999998728777