HHsearch alignment for GI: 254780900 and conserved domain: PRK11154

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed.
Probab=96.16  E-value=0.067  Score=33.33  Aligned_cols=202  Identities=14%  Similarity=0.116  Sum_probs=102.5

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC-------------CCC-C-------CCCCCHHCC
Q ss_conf             6999982566789999999998999999739965999998268520-------------027-8-------877102207
Q gi|254780900|r    5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI-------------DRG-I-------DCLRYEWFD   63 (438)
Q Consensus         5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k-------------~~~-~-------~~~~~~~~~   63 (438)
T Consensus       310 ~kv~ViGaG~MG~gIA~~~a-------~~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~v~~g~~~~~~~~~~l~~i~~~~  382 (706)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTA-------TKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHMTPAERDKQMALISGTT  382 (706)
T ss_pred             CEEEEECCCCCCHHHHHHHH-------HHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEEEC
T ss_conf             67999864732389999999-------98698799997999999999998899999998618999899999862241004


Q ss_pred             CHHHHHCCCCCCEEEECCCCCCCCH-HHHHHHHHH--CCEEEE-EECHHHHHHHHHHHHHHHHHC----CCEEEEECCCC
Q ss_conf             8889844889989998648888511-357888863--270288-504177887689999875313----96699605645
Q gi|254780900|r   64 DPLIMAGEADIDVFVELIGGEDYPA-YDAVRIALM--RGCHVV-TANKALIASHGKDLALLAQKN----NAILNFEAAVA  135 (438)
Q Consensus        64 d~~~li~~~~IDvVVEliGg~~~pA-~~~i~~AL~--~GkhVV-TANKallA~~g~eL~~lA~~~----gv~l~~easV~  135 (438)
T Consensus       383 ~~~~~---~~~DlVIEAv--~E~~~~K~~v~~~le~~~~~~aIlAtNTSsl~--i~~la~~~~rP~r~iG~HFfnP~~~m  455 (706)
T PRK11154        383 DYRGF---KHADLVIEAV--FEDLALKQQMVADVEQNCAEHTIFASNTSSLP--IGQIAAAAARPEQVIGLHYFSPVEKM  455 (706)
T ss_pred             CHHHH---CCCCEEEEEC--CCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC--HHHHHHHCCCCCEEEEEEECCCCCCC
T ss_conf             41231---5688799971--45288899999999964798858950676776--89999864784104554425774426


Q ss_pred             CHHHHHH-------HHHHHHH-CCCCEEEEEEECCCHHHHEEHH-----------HCCCCCHHHHHHHHHHCCCCC-CCC
Q ss_conf             3013189-------9987641-2862034333142000000001-----------006877889988787617615-653
Q gi|254780900|r  136 GGIPIIR-------ILKNYVE-YDEINRVYGIINGTCNYILSHM-----------NNLGLSFQDCLEEARRQGYAE-GDA  195 (438)
Q Consensus       136 ggiPii~-------~l~~~l~-~~~i~~i~GIlnGT~nyIL~~m-----------~~~g~~f~~al~~Aq~lGyaE-~DP  195 (438)
T Consensus       456 ~LVEVi~g~~Ts~et~~~~~~~~~~lgK~pv~v~d~pGFi~NRil~~~~~ea~~l~~eG~~~~~ID~a~~~~G~pmGPf~  535 (706)
T PRK11154        456 PLVEVIPHAKTSAETIATTVALAKKQGKTPIVVKDGAGFYVNRILAPYMNEAARLLLEGEPIEHIDAALVKFGFPVGPIT  535 (706)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHH
T ss_conf             42799437898389999999999975987899632374179999999999999999769999999999997599878568


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             2232117899999999999818855
Q gi|254780900|r  196 TFDINGVDSSHKIAILSAIAFGIDT  220 (438)
Q Consensus       196 ~~Di~G~Daa~Kl~ILa~~~~g~~~  220 (438)
T Consensus       536 l~D~vGlDv~~~v~~~l~~~~g~r~  560 (706)
T PRK11154        536 LLDEVGIDVGTKIIPILEAALGERF  560 (706)
T ss_pred             HHHHHCHHHHHHHHHHHHHHHCCCC
T ss_conf             8775267889999999998728777