HHsearch alignment for GI: 254780900 and conserved domain: PRK11589
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional.
Probab=96.64 E-value=0.009 Score=39.48 Aligned_cols=39 Identities=3% Similarity=0.228 Sum_probs=33.4
Q ss_pred HCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 446532799992488874899999988669957888822
Q gi|254780900|r 349 EEEKEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCP 387 (438)
Q Consensus 349 ~~~~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~ 387 (438)
T Consensus 91 ~~~~~~~v~v~g~D~PGIV~~vt~~la~~~InI~~L~T~ 129 (183)
T PRK11589 91 AMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSR 129 (183)
T ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHEEE
T ss_conf 778159999997898988999999999869987652221