HHsearch alignment for GI: 254780900 and conserved domain: TIGR00243

>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesizes 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms . In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis.; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process.
Probab=97.67  E-value=1.8e-05  Score=58.48  Aligned_cols=114  Identities=20%  Similarity=0.249  Sum_probs=77.3

Q ss_pred             EEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE-EECCCCCC---------CCCCCCCCHHCC-----------
Q ss_conf             999982-56678999999999899999973996599999-82685200---------278877102207-----------
Q gi|254780900|r    6 KVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAI-SARDKNID---------RGIDCLRYEWFD-----------   63 (438)
Q Consensus         6 kIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i-~~r~~~k~---------~~~~~~~~~~~~-----------   63 (438)
T Consensus         5 ~i~iLGSTGSIG~~TL~v~~~~~~~--------f~~~aL~~GkNv~~~~~q~~~F~P~~va~~D~~~~~~Lk~~~~~~~~   76 (406)
T TIGR00243         5 NIVILGSTGSIGKQTLDVVRHHPDK--------FQVVALSAGKNVALMVEQIEEFRPKFVAIDDAEKLKDLKEMLAETDF   76 (406)
T ss_pred             CEEEECCCCCHHHHHHHHHHHCCCC--------EEEEEEECCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCC
T ss_conf             2367437750135689999738870--------89986403417999998887419844873587889999999872288


Q ss_pred             ---------CHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             ---------888984488998999864888851135788886327028850417788768999987531396699
Q gi|254780900|r   64 ---------DPLIMAGEADIDVFVELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILN  129 (438)
Q Consensus        64 ---------d~~~li~~~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~  129 (438)
T Consensus        77 ~~~v~~G~~g~~e~a~~~d~d~V~~aivG~--aGLlPtl~Ai~~~K~iaLANKEsLVt~G~l~~d~vk~~~~~Ll  149 (406)
T TIGR00243        77 ETEVLVGEEGIVEMAAEEDADQVVNAIVGA--AGLLPTLKAIEAGKTIALANKESLVTAGHLVLDAVKKYGVKLL  149 (406)
T ss_pred             CCEEEHHHHHHHHHHHCCCHHHHHHHHHHH--HHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             730210068999998315656889999877--8778889999847814401205477556789988973488104