HHsearch alignment for GI: 254780900 and conserved domain: TIGR00243
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesizes 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms . In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis.; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process.
Probab=97.67 E-value=1.8e-05 Score=58.48 Aligned_cols=114 Identities=20% Similarity=0.249 Sum_probs=77.3
Q ss_pred EEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE-EECCCCCC---------CCCCCCCCHHCC-----------
Q ss_conf 999982-56678999999999899999973996599999-82685200---------278877102207-----------
Q gi|254780900|r 6 KVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAI-SARDKNID---------RGIDCLRYEWFD----------- 63 (438)
Q Consensus 6 kIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i-~~r~~~k~---------~~~~~~~~~~~~----------- 63 (438)
T Consensus 5 ~i~iLGSTGSIG~~TL~v~~~~~~~--------f~~~aL~~GkNv~~~~~q~~~F~P~~va~~D~~~~~~Lk~~~~~~~~ 76 (406)
T TIGR00243 5 NIVILGSTGSIGKQTLDVVRHHPDK--------FQVVALSAGKNVALMVEQIEEFRPKFVAIDDAEKLKDLKEMLAETDF 76 (406)
T ss_pred CEEEECCCCCHHHHHHHHHHHCCCC--------EEEEEEECCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCC
T ss_conf 2367437750135689999738870--------89986403417999998887419844873587889999999872288
Q ss_pred ---------CHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf ---------888984488998999864888851135788886327028850417788768999987531396699
Q gi|254780900|r 64 ---------DPLIMAGEADIDVFVELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILN 129 (438)
Q Consensus 64 ---------d~~~li~~~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~ 129 (438)
T Consensus 77 ~~~v~~G~~g~~e~a~~~d~d~V~~aivG~--aGLlPtl~Ai~~~K~iaLANKEsLVt~G~l~~d~vk~~~~~Ll 149 (406)
T TIGR00243 77 ETEVLVGEEGIVEMAAEEDADQVVNAIVGA--AGLLPTLKAIEAGKTIALANKESLVTAGHLVLDAVKKYGVKLL 149 (406)
T ss_pred CCEEEHHHHHHHHHHHCCCHHHHHHHHHHH--HHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 730210068999998315656889999877--8778889999847814401205477556789988973488104