HHsearch alignment for GI: 254780900 and conserved domain: cd01065
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=91.09 E-value=1.2 Score=24.54 Aligned_cols=109 Identities=15% Similarity=0.036 Sum_probs=60.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC----CC--CCCHHCCCHHHHHCCCCCCEEE
Q ss_conf 69999825667899999999989999997399659999982685200278----87--7102207888984488998999
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGI----DC--LRYEWFDDPLIMAGEADIDVFV 78 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~----~~--~~~~~~~d~~~li~~~~IDvVV 78 (438)
T Consensus 20 k~vlIlGaGGaarai~~aL~~~--------g~--~~I~i~nR~~~r~~~l~~~~~~~~~~~~~-~~~~~~--~~~~dliI 86 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAEL--------GA--AKIVIVNRTLEKAKALAERFGELGIAIAY-LDLEEL--LAEADLII 86 (155)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--------CC--CEEEEEECCHHHHHHHHHHHHHCCCCEEE-CCHHHH--HCCCCEEE
T ss_conf 9999986758999999999971--------99--82288608999999999985013664010-453443--15688798
Q ss_pred ECCC--CCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 8648--88851135788886327028850417788768999987531396699
Q gi|254780900|r 79 ELIG--GEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILN 129 (438)
Q Consensus 79 EliG--g~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~ 129 (438)
T Consensus 87 N~tp~G~~~~~~~p~~~~~~~~~~~~~D~iY~P~---~T~ll~~a~~~g~~~i 136 (155)
T cd01065 87 NTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPL---ETPLLKEARALGAKTI 136 (155)
T ss_pred ECCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCC---CCHHHHHHHHCCCEEE
T ss_conf 7677877787767678877599868986531787---8899999999839587