HHsearch alignment for GI: 254780900 and conserved domain: cd01065

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=91.09  E-value=1.2  Score=24.54  Aligned_cols=109  Identities=15%  Similarity=0.036  Sum_probs=60.3

Q ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC----CC--CCCHHCCCHHHHHCCCCCCEEE
Q ss_conf             69999825667899999999989999997399659999982685200278----87--7102207888984488998999
Q gi|254780900|r    5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGI----DC--LRYEWFDDPLIMAGEADIDVFV   78 (438)
Q Consensus         5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~----~~--~~~~~~~d~~~li~~~~IDvVV   78 (438)
T Consensus        20 k~vlIlGaGGaarai~~aL~~~--------g~--~~I~i~nR~~~r~~~l~~~~~~~~~~~~~-~~~~~~--~~~~dliI   86 (155)
T cd01065          20 KKVLILGAGGAARAVAYALAEL--------GA--AKIVIVNRTLEKAKALAERFGELGIAIAY-LDLEEL--LAEADLII   86 (155)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--------CC--CEEEEEECCHHHHHHHHHHHHHCCCCEEE-CCHHHH--HCCCCEEE
T ss_conf             9999986758999999999971--------99--82288608999999999985013664010-453443--15688798


Q ss_pred             ECCC--CCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             8648--88851135788886327028850417788768999987531396699
Q gi|254780900|r   79 ELIG--GEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILN  129 (438)
Q Consensus        79 EliG--g~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~  129 (438)
T Consensus        87 N~tp~G~~~~~~~p~~~~~~~~~~~~~D~iY~P~---~T~ll~~a~~~g~~~i  136 (155)
T cd01065          87 NTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPL---ETPLLKEARALGAKTI  136 (155)
T ss_pred             ECCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCC---CCHHHHHHHHCCCEEE
T ss_conf             7677877787767678877599868986531787---8899999999839587