HHsearch alignment for GI: 254780900 and conserved domain: cd05211
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=93.83 E-value=0.43 Score=27.70 Aligned_cols=158 Identities=20% Similarity=0.271 Sum_probs=72.3
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC-CCC----------------CCCCHHCCCHH
Q ss_conf 2699998256678999999999899999973996599999826852002-788----------------77102207888
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDR-GID----------------CLRYEWFDDPL 66 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~-~~~----------------~~~~~~~~d~~ 66 (438)
T Consensus 23 g~~vaVqGfGnVG~~~a~~l~~~--------G--akvvavsD~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 91 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEE--------G--GKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDY-FPGE 91 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--------C--CEEEEEECCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCC-CCCC
T ss_conf 99999989889999999999985--------9--98999985787177899986999999998189653666530-5986
Q ss_pred HHHCCCCCCEEEEC-CCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEE-CCCCCHHHH--HH
Q ss_conf 98448899899986-488885113578888632702885041778876899998753139669960-564530131--89
Q gi|254780900|r 67 IMAGEADIDVFVEL-IGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFE-AAVAGGIPI--IR 142 (438)
Q Consensus 67 ~li~~~~IDvVVEl-iGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~e-asV~ggiPi--i~ 142 (438)
T Consensus 92 ~~~~-~~~DIliPaAl~~~--I~~~~a~-~i~ak~I~EgAN~P~-t~ea~~---iL~~rgI~viPD~laNaGGVivSy~E 163 (217)
T cd05211 92 AILG-LDVDIFAPCALGNV--IDLENAK-KLKAKVVAEGANNPT-TDEALR---ILHERGIVVAPDIVANAGGVIVSYFE 163 (217)
T ss_pred CCCC-CCCCEEEECCCCCC--CCHHHHH-HHCCEEEECCCCCCC-CHHHHH---HHHHCCCEEECHHHHCCCCEEEEHHH
T ss_conf 5003-67768964244588--7989998-717728950678998-978999---99978998947688468672222999
Q ss_pred HHHHHHHCCCCEEEEEEECCCHHHHEEHHHCC-CCCHHHHHHHHHHCCC
Q ss_conf 99876412862034333142000000001006-8778899887876176
Q gi|254780900|r 143 ILKNYVEYDEINRVYGIINGTCNYILSHMNNL-GLSFQDCLEEARRQGY 190 (438)
Q Consensus 143 ~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~~~-g~~f~~al~~Aq~lGy 190 (438)
T Consensus 164 w~Qn-~~~~~---------W~~eeV~~kL~~~m~~~~~~v~~~a~~~~~ 202 (217)
T cd05211 164 WVQN-LQRLS---------WDAEEVRSKLEQVMTDIHNGVFAISERDGV 202 (217)
T ss_pred HHHH-CCCCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9740-46689---------999999999999999999999999998693