Query gi|254780900|ref|YP_003065313.1| homoserine dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 438
No_of_seqs 224 out of 1986
Neff 6.7
Searched_HMMs 39220
Date Mon May 30 02:56:56 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780900.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06349 homoserine dehydrogen 100.0 0 0 1004.4 44.5 430 2-435 1-432 (432)
2 COG0460 ThrA Homoserine dehydr 100.0 0 0 726.5 31.8 323 2-324 1-331 (333)
3 PRK06270 homoserine dehydrogen 100.0 0 0 699.3 31.1 316 4-323 2-339 (342)
4 PRK06813 homoserine dehydrogen 100.0 0 0 693.3 31.9 320 4-323 2-340 (341)
5 PRK06392 homoserine dehydrogen 100.0 0 0 656.6 27.6 309 5-323 1-325 (326)
6 PRK08374 homoserine dehydrogen 100.0 0 0 633.1 29.3 296 4-322 2-314 (316)
7 PRK09466 metL bifunctional asp 100.0 0 0 541.4 27.1 313 3-322 457-809 (810)
8 PRK09436 thrA bifunctional asp 100.0 0 0 541.0 26.6 310 2-322 463-815 (817)
9 pfam00742 Homoserine_dh Homose 100.0 0 0 461.0 15.1 179 139-317 1-179 (179)
10 KOG0455 consensus 100.0 0 0 375.6 24.0 310 3-321 2-361 (364)
11 pfam03447 NAD_binding_3 Homose 99.9 1.7E-23 4.4E-28 184.9 10.7 113 11-131 1-116 (116)
12 cd04881 ACT_HSDH-Hom ACT_HSDH_ 99.8 5.2E-20 1.3E-24 160.5 8.4 79 354-433 1-79 (79)
13 PRK11579 putative oxidoreducta 99.6 7.1E-14 1.8E-18 117.5 12.0 144 1-158 1-147 (346)
14 COG0673 MviM Predicted dehydro 99.4 2E-12 5.1E-17 107.2 10.6 142 2-157 1-149 (342)
15 KOG2741 consensus 99.4 6.9E-12 1.7E-16 103.5 11.5 148 1-159 3-156 (351)
16 PRK10206 putative dehydrogenas 99.4 1.3E-11 3.2E-16 101.6 12.9 144 4-158 2-148 (345)
17 COG4091 Predicted homoserine d 99.2 6.5E-11 1.7E-15 96.6 7.0 230 2-257 15-275 (438)
18 PRK13302 putative L-aspartate 99.2 2.5E-10 6.3E-15 92.6 9.9 132 1-145 1-136 (271)
19 PRK13304 L-aspartate dehydroge 99.1 1.1E-09 2.8E-14 88.0 11.1 130 4-145 1-133 (265)
20 pfam01408 GFO_IDH_MocA Oxidore 99.1 4.5E-10 1.1E-14 90.8 8.2 114 5-129 1-117 (120)
21 PRK13303 L-aspartate dehydroge 99.1 3.2E-09 8.2E-14 84.7 11.0 129 4-145 1-133 (265)
22 COG1712 Predicted dinucleotide 99.0 6.1E-09 1.5E-13 82.8 10.0 128 5-145 1-132 (255)
23 PRK13301 putative L-aspartate 98.9 4.8E-08 1.2E-12 76.5 10.8 130 4-144 2-133 (267)
24 PRK05447 1-deoxy-D-xylulose 5- 98.7 3.1E-07 7.8E-12 70.8 10.8 130 4-152 1-159 (379)
25 LOAD_ACT consensus 98.5 5.1E-07 1.3E-11 69.3 7.8 71 355-426 1-71 (76)
26 PRK12464 1-deoxy-D-xylulose 5- 98.5 1.8E-06 4.6E-11 65.4 10.5 154 9-183 1-195 (392)
27 COG0743 Dxr 1-deoxy-D-xylulose 98.5 9.8E-07 2.5E-11 67.3 8.7 137 4-159 1-167 (385)
28 PRK00048 dihydrodipicolinate r 98.3 1.9E-05 4.9E-10 58.2 11.2 128 4-146 2-138 (265)
29 pfam01113 DapB_N Dihydrodipico 98.1 3.4E-05 8.8E-10 56.4 9.3 109 5-126 1-116 (122)
30 pfam01842 ACT ACT domain. This 98.1 2.7E-05 6.8E-10 57.2 8.4 65 354-421 1-65 (66)
31 COG1748 LYS9 Saccharopine dehy 98.1 1E-05 2.6E-10 60.1 6.1 135 4-157 1-149 (389)
32 TIGR01921 DAP-DH diaminopimela 98.0 2.3E-05 5.9E-10 57.7 7.6 134 1-152 1-142 (326)
33 pfam03435 Saccharop_dh Sacchar 98.0 5.3E-05 1.4E-09 55.1 9.4 118 7-139 1-129 (384)
34 TIGR00036 dapB dihydrodipicoli 98.0 0.00028 7E-09 50.1 12.5 134 4-147 1-147 (281)
35 TIGR03450 mycothiol_INO1 inosi 98.0 0.00015 3.9E-09 51.9 10.8 160 5-166 1-221 (351)
36 CHL00100 ilvH acetohydroxyacid 97.9 8.9E-05 2.3E-09 53.5 9.1 73 353-427 2-74 (172)
37 cd04878 ACT_AHAS N-terminal AC 97.9 9.2E-05 2.4E-09 53.4 9.0 70 355-426 2-71 (72)
38 PRK11895 ilvH acetolactate syn 97.9 9.2E-05 2.4E-09 53.4 8.9 73 353-427 2-74 (161)
39 PRK08577 hypothetical protein; 97.9 4.6E-05 1.2E-09 55.5 7.1 74 352-426 55-129 (135)
40 COG0289 DapB Dihydrodipicolina 97.9 0.00065 1.7E-08 47.5 12.7 127 3-144 1-136 (266)
41 pfam02670 DXP_reductoisom 1-de 97.9 4.3E-05 1.1E-09 55.8 6.5 96 7-112 1-127 (129)
42 cd04876 ACT_RelA-SpoT ACT dom 97.8 0.00018 4.5E-09 51.4 8.5 69 356-426 1-69 (71)
43 PRK08178 acetolactate synthase 97.8 9.4E-05 2.4E-09 53.4 7.0 73 351-426 6-78 (96)
44 PRK11559 garR tartronate semia 97.7 0.00022 5.7E-09 50.8 7.5 170 4-190 1-197 (295)
45 TIGR00243 Dxr 1-deoxy-D-xylulo 97.7 1.8E-05 4.5E-10 58.5 1.7 114 6-129 5-149 (406)
46 PRK06737 acetolactate synthase 97.7 0.00033 8.3E-09 49.6 8.1 72 353-426 2-73 (76)
47 pfam03446 NAD_binding_2 NAD bi 97.6 0.00013 3.3E-09 52.4 5.9 121 4-141 1-128 (163)
48 PRK10872 relA GDP/GTP pyrophos 97.6 0.0016 4E-08 44.8 11.1 76 350-426 663-738 (743)
49 PRK11092 bifunctional (p)ppGpp 97.5 0.0011 2.8E-08 45.9 9.3 76 349-426 622-697 (702)
50 PRK05671 aspartate-semialdehyd 97.5 0.00039 1E-08 49.0 6.8 93 1-104 1-95 (336)
51 PRK13581 D-3-phosphoglycerate 97.4 0.00036 9.3E-09 49.3 5.9 76 347-426 444-519 (524)
52 cd04874 ACT_Af1403 N-terminal 97.4 0.00072 1.8E-08 47.2 7.2 68 355-426 2-69 (72)
53 TIGR00978 asd_EA aspartate-sem 97.4 0.00069 1.8E-08 47.3 6.5 308 5-418 1-354 (358)
54 cd04902 ACT_3PGDH-xct C-termin 97.3 0.00043 1.1E-08 48.7 5.3 66 356-425 2-67 (73)
55 cd04883 ACT_AcuB C-terminal AC 97.3 0.0021 5.4E-08 43.9 8.6 64 355-422 3-66 (72)
56 PRK06130 3-hydroxybutyryl-CoA 97.3 0.0085 2.2E-07 39.7 11.5 189 1-210 1-245 (310)
57 cd04903 ACT_LSD C-terminal ACT 97.3 0.00091 2.3E-08 46.5 6.6 66 356-426 2-68 (71)
58 COG1260 INO1 Myo-inositol-1-ph 97.3 0.00063 1.6E-08 47.6 5.3 165 1-166 2-230 (362)
59 COG2084 MmsB 3-hydroxyisobutyr 97.2 0.0034 8.6E-08 42.5 8.9 169 5-191 1-198 (286)
60 COG0440 IlvH Acetolactate synt 97.2 0.0011 2.7E-08 46.0 6.3 72 353-426 4-75 (163)
61 PRK04435 hypothetical protein; 97.2 0.0037 9.4E-08 42.2 8.8 74 352-426 67-140 (146)
62 cd04888 ACT_PheB-BS C-terminal 97.2 0.0018 4.6E-08 44.4 7.2 69 356-426 3-72 (76)
63 cd04886 ACT_ThrD-II-like C-ter 97.2 0.0035 9E-08 42.3 8.7 69 356-424 1-71 (73)
64 COG0057 GapA Glyceraldehyde-3- 97.2 0.0016 4.1E-08 44.7 6.8 143 4-167 1-178 (335)
65 PRK13562 acetolactate synthase 97.2 0.0029 7.4E-08 42.9 8.1 73 353-426 2-74 (84)
66 PRK04207 glyceraldehyde-3-phos 97.2 0.0013 3.4E-08 45.3 6.3 139 4-159 2-165 (338)
67 PRK08664 aspartate-semialdehyd 97.2 0.0024 6.2E-08 43.5 7.5 91 1-104 1-105 (350)
68 PRK08300 acetaldehyde dehydrog 97.1 0.0021 5.4E-08 43.9 6.9 132 1-146 1-143 (298)
69 pfam01118 Semialdhyde_dh Semia 97.1 0.0008 2E-08 46.9 4.8 87 6-104 1-95 (121)
70 cd04909 ACT_PDH-BS C-terminal 97.1 0.0042 1.1E-07 41.8 8.3 65 354-422 2-67 (69)
71 PRK06728 aspartate-semialdehyd 97.1 0.0013 3.3E-08 45.4 5.5 96 1-107 1-100 (347)
72 PRK07403 glyceraldehyde-3-phos 97.1 0.0035 8.8E-08 42.4 7.6 142 4-164 1-177 (337)
73 PRK00436 argC N-acetyl-gamma-g 97.0 0.0042 1.1E-07 41.8 7.8 88 4-104 1-97 (345)
74 PRK08040 putative semialdehyde 97.0 0.0029 7.5E-08 42.9 7.0 96 1-107 1-98 (337)
75 COG0317 SpoT Guanosine polypho 97.0 0.0098 2.5E-07 39.2 9.3 76 349-426 623-698 (701)
76 cd04879 ACT_3PGDH-like ACT_3PG 97.0 0.0013 3.2E-08 45.5 4.8 65 357-425 3-67 (71)
77 PRK08526 threonine dehydratase 97.0 0.0033 8.4E-08 42.6 6.8 289 97-423 66-398 (403)
78 PRK08955 glyceraldehyde-3-phos 96.9 0.0036 9.2E-08 42.2 6.8 139 4-164 2-175 (333)
79 TIGR03215 ac_ald_DH_ac acetald 96.9 0.0032 8.3E-08 42.6 6.5 130 4-147 1-138 (285)
80 cd04931 ACT_PAH ACT domain of 96.9 0.0077 2E-07 40.0 8.3 67 354-420 15-81 (90)
81 cd04905 ACT_CM-PDT C-terminal 96.9 0.0082 2.1E-07 39.8 8.4 67 356-422 4-71 (80)
82 cd02116 ACT ACT domains are co 96.9 0.003 7.7E-08 42.8 5.8 59 356-417 1-59 (60)
83 cd04929 ACT_TPH ACT domain of 96.9 0.011 2.8E-07 38.9 8.6 66 356-422 3-68 (74)
84 KOG0409 consensus 96.8 0.0098 2.5E-07 39.2 8.4 169 4-190 35-232 (327)
85 cd04880 ACT_AAAH-PDT-like ACT 96.8 0.011 2.7E-07 39.0 8.4 66 356-421 2-68 (75)
86 cd04904 ACT_AAAH ACT domain of 96.8 0.013 3.3E-07 38.4 8.7 66 356-422 3-68 (74)
87 PRK07729 glyceraldehyde-3-phos 96.8 0.0063 1.6E-07 40.6 7.0 133 4-148 2-168 (343)
88 PRK13535 erythrose 4-phosphate 96.8 0.0068 1.7E-07 40.3 7.1 145 4-167 1-180 (336)
89 PRK11899 prephenate dehydratas 96.7 0.015 3.7E-07 38.0 8.6 70 356-425 197-267 (284)
90 PRK06545 prephenate dehydrogen 96.7 0.0044 1.1E-07 41.7 5.8 332 6-413 2-347 (357)
91 cd04872 ACT_1ZPV ACT domain pr 96.7 0.0067 1.7E-07 40.4 6.6 60 358-419 6-68 (88)
92 PRK12490 6-phosphogluconate de 96.7 0.0076 1.9E-07 40.0 6.9 119 5-138 1-124 (298)
93 PRK06382 threonine dehydratase 96.7 0.0093 2.4E-07 39.4 7.3 287 97-424 65-397 (400)
94 PRK11589 gcvR glycine cleavage 96.6 0.009 2.3E-07 39.5 6.9 39 349-387 91-129 (183)
95 PRK06598 aspartate-semialdehyd 96.6 0.0052 1.3E-07 41.2 5.6 92 4-106 2-95 (348)
96 PRK00194 hypothetical protein; 96.6 0.008 2E-07 39.8 6.4 61 357-419 7-70 (90)
97 COG4492 PheB ACT domain-contai 96.6 0.015 3.8E-07 38.0 7.8 75 351-426 70-144 (150)
98 PRK10622 pheA bifunctional cho 96.6 0.035 9E-07 35.3 9.7 80 355-434 299-379 (386)
99 cd04913 ACT_AKii-LysC-BS-like_ 96.6 0.0084 2.1E-07 39.7 6.5 59 359-422 8-66 (75)
100 COG0136 Asd Aspartate-semialde 96.5 0.009 2.3E-07 39.5 6.4 313 4-418 1-331 (334)
101 PRK08198 threonine dehydratase 96.5 0.0093 2.4E-07 39.4 6.4 290 97-425 70-403 (406)
102 PRK09599 6-phosphogluconate de 96.5 0.012 2.9E-07 38.7 6.9 119 5-138 1-124 (301)
103 cd04901 ACT_3PGDH C-terminal A 96.5 0.0055 1.4E-07 41.0 5.2 62 359-426 5-66 (69)
104 cd04882 ACT_Bt0572_2 C-termina 96.5 0.023 5.9E-07 36.6 8.1 60 356-421 2-61 (65)
105 pfam00044 Gp_dh_N Glyceraldehy 96.5 0.02 5E-07 37.1 7.7 91 5-106 1-120 (150)
106 cd04889 ACT_PDH-BS-like C-term 96.4 0.0092 2.3E-07 39.4 5.7 44 357-400 2-45 (56)
107 PRK11898 prephenate dehydratas 96.4 0.032 8.2E-07 35.6 8.3 69 355-423 197-267 (285)
108 smart00846 Gp_dh_N Glyceraldeh 96.3 0.011 2.7E-07 39.0 5.8 33 5-46 1-33 (149)
109 COG0077 PheA Prephenate dehydr 96.3 0.05 1.3E-06 34.3 8.9 73 353-426 194-268 (279)
110 pfam01210 NAD_Gly3P_dh_N NAD-d 96.3 0.0068 1.7E-07 40.3 4.5 90 6-110 2-108 (159)
111 PRK13011 formyltetrahydrofolat 96.3 0.032 8.2E-07 35.6 7.8 16 115-130 128-143 (287)
112 cd04875 ACT_F4HF-DF N-terminal 96.2 0.027 6.9E-07 36.1 7.4 64 356-419 2-68 (74)
113 PTZ00023 glyceraldehyde-3-phos 96.2 0.019 4.8E-07 37.2 6.6 142 4-167 2-178 (337)
114 cd04891 ACT_AK-LysC-DapG-like_ 96.2 0.022 5.6E-07 36.7 6.8 55 359-418 7-61 (61)
115 cd04869 ACT_GcvR_2 ACT domains 96.2 0.024 6.1E-07 36.5 7.0 64 356-419 2-71 (81)
116 COG2150 Predicted regulator of 96.2 0.028 7.2E-07 36.0 7.3 64 358-426 100-164 (167)
117 COG3367 Uncharacterized conser 96.2 0.019 4.7E-07 37.3 6.3 94 34-129 24-126 (339)
118 PRK07334 threonine dehydratase 96.2 0.08 2E-06 32.8 9.6 294 97-425 66-397 (399)
119 PRK11880 pyrroline-5-carboxyla 96.2 0.048 1.2E-06 34.4 8.4 67 4-80 2-69 (267)
120 PRK11154 fadJ multifunctional 96.2 0.067 1.7E-06 33.3 9.1 202 5-220 310-560 (706)
121 COG1707 ACT domain-containing 96.2 0.019 4.8E-07 37.2 6.2 69 355-426 4-72 (218)
122 PRK07680 late competence prote 96.1 0.01 2.6E-07 39.1 4.8 87 5-104 1-94 (273)
123 PRK06901 aspartate-semialdehyd 96.1 0.031 8E-07 35.7 7.2 93 1-104 1-94 (323)
124 COG2716 GcvR Glycine cleavage 96.1 0.0073 1.9E-07 40.1 3.9 49 351-399 90-138 (176)
125 cd04887 ACT_MalLac-Enz ACT_Mal 96.1 0.06 1.5E-06 33.7 8.5 67 356-424 2-68 (74)
126 cd04884 ACT_CBS C-terminal ACT 96.1 0.044 1.1E-06 34.6 7.8 66 357-422 3-68 (72)
127 TIGR01127 ilvA_1Cterm threonin 96.1 0.06 1.5E-06 33.7 8.4 283 97-424 46-379 (381)
128 PRK06027 purU formyltetrahydro 96.1 0.06 1.5E-06 33.7 8.4 16 115-130 126-141 (285)
129 PRK07660 consensus 96.1 0.054 1.4E-06 34.0 8.2 185 5-209 4-244 (283)
130 PRK01759 glnD PII uridylyl-tra 96.0 0.059 1.5E-06 33.7 8.1 53 352-406 790-842 (862)
131 PRK03381 PII uridylyl-transfer 96.0 0.14 3.5E-06 31.2 9.9 111 296-408 643-762 (781)
132 TIGR01532 E4PD_g-proteo D-eryt 95.9 0.0017 4.2E-08 44.6 0.0 187 6-236 1-230 (334)
133 PRK11790 D-3-phosphoglycerate 95.9 0.056 1.4E-06 33.9 7.7 102 309-427 305-406 (409)
134 KOG2663 consensus 95.9 0.025 6.5E-07 36.3 6.0 72 349-424 73-146 (309)
135 pfam07994 NAD_binding_5 Myo-in 95.9 0.018 4.6E-07 37.4 5.1 25 5-29 1-26 (389)
136 PRK04374 PII uridylyl-transfer 95.6 0.2 5.2E-06 30.0 9.6 58 346-405 787-846 (869)
137 PRK13010 purU formyltetrahydro 95.6 0.077 2E-06 32.9 7.5 33 354-386 10-42 (289)
138 PRK09260 3-hydroxybutyryl-CoA 95.6 0.13 3.2E-06 31.4 8.5 184 6-209 4-244 (289)
139 COG0002 ArgC Acetylglutamate s 95.6 0.054 1.4E-06 34.0 6.6 90 3-104 1-99 (349)
140 cd04926 ACT_ACR_4 C-terminal 95.6 0.045 1.2E-06 34.5 6.1 51 356-408 4-54 (72)
141 KOG2742 consensus 95.6 0.0089 2.3E-07 39.5 2.5 197 1-242 1-224 (367)
142 PRK11730 fadB multifunctional 95.5 0.21 5.2E-06 29.9 9.3 197 4-218 313-562 (715)
143 TIGR00691 spoT_relA RelA/SpoT 95.5 0.12 3E-06 31.6 8.0 77 348-425 662-738 (741)
144 PRK08293 3-hydroxybutyryl-CoA 95.5 0.13 3.4E-06 31.2 8.2 186 5-209 4-247 (288)
145 PRK06476 pyrroline-5-carboxyla 95.4 0.047 1.2E-06 34.4 5.8 67 5-81 1-69 (255)
146 COG4693 PchG Oxidoreductase (N 95.4 0.077 2E-06 32.9 6.9 145 1-158 1-152 (361)
147 pfam03807 F420_oxidored NADP o 95.4 0.015 3.9E-07 37.8 3.3 63 6-80 1-65 (93)
148 PRK05808 3-hydroxybutyryl-CoA 95.4 0.14 3.6E-06 31.1 8.2 184 5-208 4-243 (282)
149 cd04899 ACT_ACR-UUR-like_2 C-t 95.4 0.059 1.5E-06 33.7 6.2 52 355-408 2-53 (70)
150 PRK00094 gpsA NAD(P)H-dependen 95.4 0.021 5.4E-07 36.9 3.9 198 4-249 1-233 (325)
151 cd04873 ACT_UUR-ACR-like ACT d 95.3 0.17 4.3E-06 30.5 8.4 60 356-417 3-66 (70)
152 pfam02629 CoA_binding CoA bind 95.3 0.092 2.4E-06 32.4 7.0 90 3-104 2-91 (96)
153 TIGR01761 thiaz-red thiazoliny 95.3 0.29 7.3E-06 28.9 9.5 188 2-206 1-205 (378)
154 COG0345 ProC Pyrroline-5-carbo 95.3 0.15 3.9E-06 30.9 8.0 89 4-105 1-94 (266)
155 COG3804 Uncharacterized conser 95.3 0.15 3.8E-06 30.9 7.9 117 5-135 3-133 (350)
156 COG2844 GlnD UTP:GlnB (protein 95.2 0.29 7.5E-06 28.8 9.3 100 306-407 741-843 (867)
157 PRK07634 pyrroline-5-carboxyla 95.2 0.064 1.6E-06 33.5 5.8 72 1-81 1-74 (245)
158 COG0240 GpsA Glycerol-3-phosph 95.2 0.071 1.8E-06 33.2 6.0 199 4-249 1-232 (329)
159 PRK12491 pyrroline-5-carboxyla 95.1 0.023 5.7E-07 36.7 3.4 89 1-104 1-95 (272)
160 PRK00275 glnD PII uridylyl-tra 95.1 0.15 3.9E-06 30.8 7.6 51 352-404 813-863 (894)
161 PRK05092 PII uridylyl-transfer 95.1 0.19 4.8E-06 30.2 8.1 58 345-404 836-895 (934)
162 COG4747 ACT domain-containing 95.1 0.13 3.4E-06 31.2 7.2 60 355-421 71-130 (142)
163 PRK07502 cyclohexadienyl dehyd 95.1 0.052 1.3E-06 34.1 5.1 70 1-81 1-74 (307)
164 PRK08268 3-hydroxybutyryl-CoA 95.0 0.13 3.2E-06 31.4 7.1 188 5-209 4-244 (503)
165 PRK05472 redox-sensing transcr 95.0 0.073 1.9E-06 33.1 5.8 93 2-104 82-175 (211)
166 PRK03059 PII uridylyl-transfer 95.0 0.16 4.1E-06 30.7 7.4 51 351-403 785-835 (857)
167 TIGR02964 xanthine_xdhC xanthi 94.9 0.18 4.6E-06 30.3 7.5 81 5-99 116-210 (270)
168 PRK07679 pyrroline-5-carboxyla 94.9 0.037 9.4E-07 35.2 4.0 90 3-105 2-98 (279)
169 PRK05007 PII uridylyl-transfer 94.9 0.098 2.5E-06 32.2 6.1 55 350-406 802-856 (881)
170 PRK07431 aspartate kinase; Pro 94.8 0.19 4.8E-06 30.2 7.4 63 358-423 445-509 (594)
171 cd04908 ACT_Bt0572_1 N-termina 94.7 0.13 3.3E-06 31.4 6.3 59 356-422 4-62 (66)
172 cd05313 NAD_bind_2_Glu_DH NAD( 94.7 0.28 7E-06 29.0 8.0 37 4-50 38-74 (254)
173 PRK07066 3-hydroxybutyryl-CoA 94.5 0.1 2.6E-06 32.1 5.5 198 1-249 4-227 (321)
174 PRK13243 glyoxylate reductase; 94.5 0.29 7.4E-06 28.9 7.8 11 94-104 85-95 (333)
175 COG4747 ACT domain-containing 94.5 0.25 6.3E-06 29.4 7.4 72 355-434 5-76 (142)
176 cd04870 ACT_PSP_1 CT domains f 94.5 0.21 5.3E-06 29.9 7.0 60 356-418 2-61 (75)
177 PRK00683 murD UDP-N-acetylmura 94.4 0.16 4.1E-06 30.7 6.2 123 4-146 3-147 (418)
178 PRK07431 aspartate kinase; Pro 94.3 0.27 6.8E-06 29.1 7.2 49 360-418 358-406 (594)
179 COG3830 ACT domain-containing 94.2 0.057 1.5E-06 33.8 3.6 63 353-418 3-66 (90)
180 COG1179 Dinucleotide-utilizing 94.1 0.19 4.9E-06 30.2 6.2 92 5-105 31-152 (263)
181 TIGR01850 argC N-acetyl-gamma- 94.1 0.23 6E-06 29.5 6.6 86 5-103 1-102 (361)
182 pfam02826 2-Hacid_dh_C D-isome 94.1 0.42 1.1E-05 27.7 7.9 105 5-126 37-144 (176)
183 smart00859 Semialdhyde_dh Semi 94.0 0.13 3.3E-06 31.4 5.2 87 6-105 1-98 (122)
184 PRK11863 N-acetyl-gamma-glutam 94.0 0.26 6.6E-06 29.2 6.6 77 4-104 2-79 (314)
185 COG2344 AT-rich DNA-binding pr 93.8 0.21 5.5E-06 29.8 6.0 92 2-104 82-175 (211)
186 PRK07530 3-hydroxybutyryl-CoA 93.8 0.095 2.4E-06 32.3 4.2 67 1-81 1-91 (292)
187 cd05211 NAD_bind_Glu_Leu_Phe_V 93.8 0.43 1.1E-05 27.7 7.5 158 4-190 23-202 (217)
188 PRK08410 2-hydroxyacid dehydro 93.8 0.61 1.6E-05 26.6 8.4 11 271-281 264-274 (311)
189 cd00755 YgdL_like Family of ac 93.8 0.16 4.1E-06 30.7 5.3 91 5-105 12-133 (231)
190 TIGR01546 GAPDH-II_archae glyc 93.8 0.051 1.3E-06 34.2 2.7 147 7-181 1-173 (335)
191 TIGR03376 glycerol3P_DH glycer 93.7 0.24 6.1E-06 29.5 6.0 97 6-109 1-119 (342)
192 pfam02423 OCD_Mu_crystall Orni 93.6 0.43 1.1E-05 27.7 7.2 87 5-104 130-222 (312)
193 TIGR02853 spore_dpaA dipicolin 93.6 0.12 3E-06 31.6 4.3 107 6-139 154-266 (288)
194 PRK08507 prephenate dehydrogen 93.5 0.13 3.2E-06 31.4 4.4 168 5-205 1-174 (275)
195 TIGR00119 acolac_sm acetolacta 93.5 0.37 9.5E-06 28.1 6.8 73 353-427 2-74 (205)
196 PRK06928 pyrroline-5-carboxyla 93.5 0.13 3.3E-06 31.3 4.4 88 4-104 1-95 (275)
197 TIGR01327 PGDH D-3-phosphoglyc 93.4 0.44 1.1E-05 27.6 7.1 355 6-419 141-526 (535)
198 PRK07574 formate dehydrogenase 93.4 0.41 1E-05 27.8 6.9 15 267-281 313-327 (385)
199 cd04895 ACT_ACR_1 ACT domain-c 93.4 0.28 7.1E-06 29.0 5.9 50 356-407 4-53 (72)
200 TIGR00655 PurU formyltetrahydr 93.3 0.3 7.6E-06 28.8 6.0 64 355-418 2-77 (294)
201 cd04900 ACT_UUR-like_1 ACT dom 93.2 0.77 2E-05 25.9 8.0 50 356-406 4-53 (73)
202 COG0111 SerA Phosphoglycerate 93.2 0.63 1.6E-05 26.5 7.5 13 269-281 264-276 (324)
203 TIGR01087 murD UDP-N-acetylmur 93.1 0.22 5.6E-06 29.7 5.1 123 6-145 1-154 (476)
204 PRK06129 3-hydroxyacyl-CoA deh 93.1 0.13 3.3E-06 31.3 3.9 63 6-81 4-90 (308)
205 cd01076 NAD_bind_1_Glu_DH NAD( 93.0 0.72 1.8E-05 26.1 7.6 158 4-190 31-211 (227)
206 cd04892 ACT_AK-like_2 ACT doma 93.0 0.51 1.3E-05 27.2 6.8 52 360-419 10-61 (65)
207 pfam02737 3HCDH_N 3-hydroxyacy 92.9 0.099 2.5E-06 32.2 3.1 62 6-81 1-86 (180)
208 PRK07819 3-hydroxybutyryl-CoA 92.8 0.13 3.4E-06 31.3 3.7 184 6-208 4-244 (284)
209 cd04921 ACT_AKi-HSDH-ThrA-like 92.8 0.44 1.1E-05 27.6 6.3 52 360-419 11-62 (80)
210 cd00757 ThiF_MoeB_HesA_family 92.8 0.87 2.2E-05 25.5 8.3 20 5-24 22-41 (228)
211 PRK08223 hypothetical protein; 92.7 0.9 2.3E-05 25.4 8.4 20 5-24 28-47 (287)
212 COG0788 PurU Formyltetrahydrof 92.6 0.76 1.9E-05 25.9 7.3 16 115-130 128-143 (287)
213 PRK06199 ornithine cyclodeamin 92.5 0.35 8.9E-06 28.3 5.4 90 5-104 156-257 (379)
214 COG4569 MhpF Acetaldehyde dehy 92.5 0.22 5.7E-06 29.7 4.4 93 1-103 1-99 (310)
215 KOG2711 consensus 92.3 0.86 2.2E-05 25.6 7.3 97 3-108 20-141 (372)
216 PRK00141 murD UDP-N-acetylmura 92.3 0.77 2E-05 25.9 7.0 84 6-104 19-105 (476)
217 pfam06408 consensus 92.2 0.24 6.2E-06 29.4 4.3 90 6-103 3-104 (471)
218 PRK06932 glycerate dehydrogena 92.1 1.1 2.7E-05 24.9 8.7 11 119-129 82-92 (314)
219 PRK09117 consensus 92.1 0.22 5.5E-06 29.8 3.9 183 6-208 4-242 (282)
220 PRK04663 murD UDP-N-acetylmura 92.0 0.63 1.6E-05 26.5 6.3 87 4-104 7-97 (438)
221 PRK07417 arogenate dehydrogena 91.9 0.74 1.9E-05 26.0 6.5 64 4-81 1-66 (280)
222 CHL00194 ycf39 Ycf39; Provisio 91.9 0.75 1.9E-05 26.0 6.5 106 5-137 1-114 (319)
223 PRK05442 malate dehydrogenase; 91.9 1.1 2.8E-05 24.8 8.7 77 1-84 1-90 (325)
224 PRK07531 bifunctional 3-hydrox 91.8 0.6 1.5E-05 26.7 5.9 64 5-81 3-86 (489)
225 TIGR01693 UTase_glnD protein-P 91.8 0.82 2.1E-05 25.7 6.6 108 299-408 761-884 (903)
226 cd04930 ACT_TH ACT domain of t 91.7 1.2 3E-05 24.6 9.7 68 352-420 40-107 (115)
227 PRK06141 ornithine cyclodeamin 91.7 0.65 1.6E-05 26.4 6.0 31 197-230 128-158 (313)
228 PRK03369 murD UDP-N-acetylmura 91.6 0.4 1E-05 27.9 4.9 85 5-104 13-99 (487)
229 PRK08639 threonine dehydratase 91.5 1.2 3.1E-05 24.5 8.6 290 97-423 71-403 (418)
230 PRK00066 ldh L-lactate dehydro 91.5 1.2 3.1E-05 24.5 8.6 70 1-82 2-82 (315)
231 PTZ00142 6-phosphogluconate de 91.5 0.51 1.3E-05 27.2 5.3 165 1-186 1-204 (474)
232 PRK12767 carbamoyl phosphate s 91.4 1.3 3.2E-05 24.4 9.1 114 4-128 1-126 (325)
233 COG2085 Predicted dinucleotide 91.3 0.67 1.7E-05 26.3 5.7 22 4-25 1-22 (211)
234 PRK05396 tdh L-threonine 3-deh 91.1 1.1 2.7E-05 24.9 6.6 30 218-247 160-189 (341)
235 PRK06635 aspartate kinase; Rev 91.1 0.87 2.2E-05 25.5 6.2 247 143-419 120-398 (402)
236 cd01065 NAD_bind_Shikimate_DH 91.1 1.2 3.1E-05 24.5 6.9 109 5-129 20-136 (155)
237 PRK08306 dipicolinate synthase 91.1 0.67 1.7E-05 26.3 5.6 102 5-128 3-117 (296)
238 PRK06823 ornithine cyclodeamin 91.0 0.82 2.1E-05 25.7 6.0 86 5-104 129-220 (315)
239 PRK06407 ornithine cyclodeamin 91.0 0.81 2.1E-05 25.7 6.0 85 6-104 120-211 (302)
240 cd04924 ACT_AK-Arch_2 ACT doma 91.0 1.2 3.1E-05 24.5 6.8 51 361-419 12-62 (66)
241 cd04922 ACT_AKi-HSDH-ThrA_2 AC 90.8 1.4 3.5E-05 24.1 7.0 52 360-419 11-62 (66)
242 COG0334 GdhA Glutamate dehydro 90.8 0.78 2E-05 25.9 5.7 10 98-107 100-109 (411)
243 PRK08291 ornithine cyclodeamin 90.7 1.2 3E-05 24.6 6.6 86 5-104 133-225 (330)
244 PRK10675 UDP-galactose-4-epime 90.7 0.56 1.4E-05 26.9 4.9 108 5-133 1-124 (338)
245 PRK05690 molybdopterin biosynt 90.7 1.4 3.7E-05 24.0 7.4 20 5-24 33-52 (245)
246 cd04925 ACT_ACR_2 ACT domain-c 90.7 1.5 3.7E-05 24.0 8.0 50 356-407 3-52 (74)
247 KOG2380 consensus 90.6 0.36 9.2E-06 28.2 3.9 65 1-80 49-115 (480)
248 cd04923 ACT_AK-LysC-DapG-like_ 90.6 1.4 3.6E-05 24.0 6.9 50 360-419 10-59 (63)
249 cd04919 ACT_AK-Hom3_2 ACT doma 90.6 1.4 3.7E-05 24.0 6.9 51 361-419 12-62 (66)
250 PRK12921 2-dehydropantoate 2-r 90.5 1.5 3.8E-05 23.9 8.3 179 5-213 1-192 (306)
251 PRK00045 hemA glutamyl-tRNA re 90.4 0.61 1.6E-05 26.6 4.8 14 176-189 214-227 (429)
252 PRK12480 D-lactate dehydrogena 90.3 1.5 3.9E-05 23.8 8.0 10 315-324 243-252 (330)
253 cd04912 ACT_AKiii-LysC-EC-like 90.3 1.4 3.5E-05 24.2 6.5 57 361-424 12-72 (75)
254 PRK06046 alanine dehydrogenase 90.2 1.1 2.9E-05 24.8 6.1 84 5-103 130-220 (326)
255 cd01075 NAD_bind_Leu_Phe_Val_D 90.1 1.4 3.5E-05 24.1 6.5 106 5-129 29-136 (200)
256 KOG2018 consensus 90.0 0.28 7.3E-06 28.9 2.9 91 7-106 77-197 (430)
257 PRK08618 ornithine cyclodeamin 90.0 1 2.6E-05 25.0 5.8 167 5-190 128-319 (325)
258 PRK01438 murD UDP-N-acetylmura 90.0 0.79 2E-05 25.8 5.2 86 5-104 15-106 (481)
259 PRK09880 L-idonate 5-dehydroge 90.0 1.3 3.3E-05 24.3 6.2 24 400-423 313-336 (343)
260 COG2910 Putative NADH-flavin r 89.9 1.4 3.6E-05 24.1 6.4 68 5-84 1-73 (211)
261 pfam00208 ELFV_dehydrog Glutam 89.9 1.7 4.3E-05 23.5 7.4 106 5-129 33-160 (237)
262 cd04936 ACT_AKii-LysC-BS-like_ 89.8 1.7 4.4E-05 23.5 6.7 50 360-419 10-59 (63)
263 PRK06249 2-dehydropantoate 2-r 89.7 1.7 4.4E-05 23.4 7.0 91 1-105 1-105 (313)
264 pfam00056 Ldh_1_N lactate/mala 89.6 1.7 4.5E-05 23.4 8.3 21 5-25 1-22 (142)
265 PTZ00082 L-lactate dehydrogena 89.6 1.8 4.5E-05 23.4 7.8 69 1-82 1-84 (322)
266 pfam00670 AdoHcyase_NAD S-aden 89.5 0.91 2.3E-05 25.4 5.2 85 6-107 25-109 (162)
267 PRK06487 glycerate dehydrogena 89.5 1.8 4.6E-05 23.3 9.1 15 404-418 291-305 (317)
268 cd04927 ACT_ACR-like_2 Second 89.5 1.4 3.6E-05 24.0 6.2 50 354-404 1-50 (76)
269 pfam00899 ThiF ThiF family. Th 89.5 1.8 4.6E-05 23.3 7.8 20 5-24 2-21 (134)
270 PRK02472 murD UDP-N-acetylmura 89.4 1.1 2.9E-05 24.7 5.6 86 5-104 10-101 (450)
271 PRK04308 murD UDP-N-acetylmura 89.4 0.85 2.2E-05 25.6 4.9 86 5-104 6-96 (445)
272 TIGR03451 mycoS_dep_FDH mycoth 89.4 1.5 3.8E-05 23.9 6.1 24 400-423 329-352 (358)
273 TIGR02354 thiF_fam2 thiamine b 89.3 0.67 1.7E-05 26.3 4.4 94 5-107 22-145 (200)
274 TIGR01296 asd_B aspartate-semi 89.3 0.46 1.2E-05 27.5 3.5 213 6-245 1-232 (350)
275 cd04915 ACT_AK-Ectoine_2 ACT d 89.3 1.6 4E-05 23.7 6.2 50 362-419 13-62 (66)
276 PRK00258 aroE shikimate 5-dehy 89.3 1.9 4.7E-05 23.2 6.9 37 3-43 4-40 (275)
277 PRK12439 NAD(P)H-dependent gly 89.2 0.063 1.6E-06 33.6 -1.0 197 3-249 5-237 (340)
278 COG0527 LysC Aspartokinases [A 89.2 1.5 3.8E-05 23.9 6.0 260 131-418 149-441 (447)
279 PRK07340 ornithine cyclodeamin 89.1 1.3 3.4E-05 24.3 5.8 84 5-103 126-214 (304)
280 TIGR03366 HpnZ_proposed putati 89.1 1.4 3.7E-05 24.0 5.9 15 179-193 155-169 (280)
281 cd04868 ACT_AK-like ACT domain 89.0 0.51 1.3E-05 27.2 3.6 49 362-418 12-60 (60)
282 PRK04690 murD UDP-N-acetylmura 89.0 1.8 4.6E-05 23.3 6.3 123 5-146 9-160 (468)
283 PRK03806 murD UDP-N-acetylmura 88.9 1.9 4.9E-05 23.1 6.5 84 5-104 7-94 (438)
284 PRK01710 murD UDP-N-acetylmura 88.9 1.6 4E-05 23.7 6.0 85 5-104 15-106 (458)
285 COG0373 HemA Glutamyl-tRNA red 88.9 1.3 3.3E-05 24.3 5.6 26 175-201 209-234 (414)
286 cd04916 ACT_AKiii-YclM-BS_2 AC 88.7 1.7 4.4E-05 23.4 6.1 52 360-419 11-62 (66)
287 pfam10727 Rossmann-like Rossma 88.5 1.6 4E-05 23.8 5.8 101 8-127 1-105 (111)
288 COG0771 MurD UDP-N-acetylmuram 88.4 1.8 4.6E-05 23.3 6.1 126 4-146 7-155 (448)
289 PRK08644 thiamine biosynthesis 88.2 0.55 1.4E-05 26.9 3.3 87 5-106 28-149 (209)
290 cd04928 ACT_TyrKc Uncharacteri 88.2 1.7 4.3E-05 23.6 5.8 61 354-415 2-64 (68)
291 KOG0022 consensus 88.1 1.1 2.7E-05 24.9 4.7 25 400-424 346-370 (375)
292 PRK11908 NAD-dependent epimera 88.0 1.6 4.2E-05 23.6 5.6 21 6-26 3-24 (347)
293 PRK08328 hypothetical protein; 87.9 2.3 5.8E-05 22.6 8.1 20 5-24 28-47 (230)
294 cd04935 ACT_AKiii-DAPDC_1 ACT 87.8 1 2.6E-05 25.0 4.5 57 361-424 12-72 (75)
295 PRK09977 putative Mg(2+) trans 87.6 2.4 6E-05 22.5 8.2 70 352-426 143-212 (215)
296 TIGR00872 gnd_rel 6-phosphoglu 87.6 2.4 6.1E-05 22.5 6.4 22 5-26 1-23 (341)
297 cd01487 E1_ThiF_like E1_ThiF_l 87.5 2.4 6.1E-05 22.5 7.8 86 6-106 1-121 (174)
298 pfam01488 Shikimate_DH Shikima 87.4 0.83 2.1E-05 25.7 3.8 68 5-84 13-86 (134)
299 PRK11152 ilvM acetolactate syn 87.3 0.68 1.7E-05 26.3 3.3 71 353-426 3-73 (76)
300 COG0287 TyrA Prephenate dehydr 87.1 1.8 4.6E-05 23.3 5.4 93 3-110 2-104 (279)
301 cd05213 NAD_bind_Glutamyl_tRNA 87.1 1.2 3.1E-05 24.5 4.5 102 129-247 102-203 (311)
302 cd05293 LDH_1 A subgroup of L- 86.9 2.6 6.6E-05 22.2 8.9 98 4-121 3-111 (312)
303 PRK06291 aspartate kinase; Pro 86.7 2.6 6.7E-05 22.2 7.8 246 148-419 185-459 (466)
304 PRK06522 2-dehydropantoate 2-r 86.7 2.6 6.7E-05 22.2 8.3 210 5-248 1-234 (307)
305 PRK01368 murD UDP-N-acetylmura 86.6 1.4 3.6E-05 24.1 4.6 84 4-104 6-92 (450)
306 PRK00257 erythronate-4-phospha 86.5 0.69 1.8E-05 26.2 3.0 140 5-164 117-268 (379)
307 cd04937 ACT_AKi-DapG-BS_2 ACT 86.5 2.7 6.9E-05 22.1 6.9 50 360-419 11-60 (64)
308 TIGR03026 NDP-sugDHase nucleot 86.3 2.8 7E-05 22.0 6.1 106 5-138 1-126 (411)
309 PRK09414 glutamate dehydrogena 85.8 2.3 5.9E-05 22.5 5.4 16 187-202 222-237 (446)
310 COG0569 TrkA K+ transport syst 85.5 3 7.7E-05 21.7 8.1 87 5-103 1-97 (225)
311 cd05292 LDH_2 A subgroup of L- 85.3 0.8 2E-05 25.8 2.9 64 5-80 1-74 (308)
312 PRK05562 precorrin-2 dehydroge 85.2 1.5 3.7E-05 24.0 4.1 130 2-148 22-155 (222)
313 PRK06223 malate dehydrogenase; 84.8 0.88 2.2E-05 25.5 2.9 97 5-122 1-110 (312)
314 TIGR01268 Phe4hydrox_tetr phen 84.8 3.2 8.3E-05 21.5 7.4 73 349-421 14-91 (445)
315 PRK08655 prephenate dehydrogen 84.7 2.6 6.6E-05 22.2 5.2 101 5-123 1-108 (441)
316 COG2061 ACT-domain-containing 84.7 3.3 8.4E-05 21.5 7.7 65 355-419 7-71 (170)
317 COG1063 Tdh Threonine dehydrog 84.3 3.2 8.2E-05 21.6 5.6 21 401-421 320-340 (350)
318 TIGR01534 GAPDH-I glyceraldehy 84.0 0.86 2.2E-05 25.6 2.6 144 6-164 1-206 (366)
319 PRK10820 DNA-binding transcrip 83.7 3.6 9.1E-05 21.2 8.2 19 358-376 407-425 (513)
320 pfam01370 Epimerase NAD depend 83.5 3.6 9.3E-05 21.2 6.6 107 7-134 1-117 (235)
321 cd04933 ACT_AK1-AT_1 ACT domai 83.1 3.8 9.6E-05 21.1 6.2 55 362-423 13-74 (78)
322 TIGR01181 dTDP_gluc_dehyt dTDP 83.1 3.8 9.6E-05 21.1 5.5 243 11-321 7-272 (340)
323 pfam07755 DUF1611 Protein of u 83.1 1.6 4.1E-05 23.6 3.6 70 60-132 21-94 (302)
324 PRK08210 aspartate kinase I; R 82.8 3.9 9.9E-05 21.0 6.6 248 143-419 125-398 (405)
325 COG1090 Predicted nucleoside-d 82.6 2.1 5.4E-05 22.8 4.1 172 7-196 1-249 (297)
326 cd04911 ACT_AKiii-YclM-BS_1 AC 82.6 3.6 9.1E-05 21.2 5.2 57 360-421 11-67 (76)
327 PTZ00325 malate dehydrogenase; 82.2 1.4 3.5E-05 24.2 3.0 22 4-25 1-23 (313)
328 PRK05476 S-adenosyl-L-homocyst 82.2 3.2 8E-05 21.6 4.8 46 61-107 82-127 (427)
329 PRK12550 shikimate 5-dehydroge 81.9 4.2 0.00011 20.8 5.8 24 99-122 62-85 (272)
330 PRK08961 bifunctional aspartat 81.8 3.2 8.1E-05 21.6 4.8 57 361-424 332-392 (865)
331 PRK09496 trkA potassium transp 81.8 1.5 3.9E-05 23.8 3.1 68 5-83 1-75 (455)
332 TIGR00656 asp_kin_monofn aspar 81.7 3.9 0.0001 20.9 5.2 47 354-401 330-377 (480)
333 PRK10083 putative dehydrogenas 81.6 4.3 0.00011 20.7 6.5 22 400-421 306-327 (339)
334 PRK13771 putative alcohol dehy 81.4 4.3 0.00011 20.6 6.4 24 400-423 302-325 (332)
335 cd04893 ACT_GcvR_1 ACT domains 81.4 4.3 0.00011 20.6 5.4 59 358-420 6-64 (77)
336 PRK08289 glyceraldehyde-3-phos 81.2 3.1 7.9E-05 21.6 4.5 148 4-167 129-317 (479)
337 cd04890 ACT_AK-like_1 ACT doma 80.7 4.6 0.00012 20.5 5.7 52 361-418 11-62 (62)
338 PTZ00188 adrenodoxin reductase 80.7 4.4 0.00011 20.6 5.2 64 2-75 37-107 (506)
339 TIGR01771 L-LDH-NAD L-lactate 80.3 3.3 8.4E-05 21.5 4.4 60 9-80 1-72 (302)
340 cd05294 LDH-like_MDH_nadp A la 80.3 1.6 4.2E-05 23.6 2.8 21 5-25 1-22 (309)
341 pfam05221 AdoHcyase S-adenosyl 80.2 4 0.0001 20.9 4.8 20 368-387 391-411 (430)
342 TIGR03466 HpnA hopanoid-associ 80.1 4.8 0.00012 20.3 6.4 22 5-26 1-23 (328)
343 PRK13940 glutamyl-tRNA reducta 79.9 4.5 0.00012 20.5 5.0 22 116-137 139-160 (414)
344 PRK10124 putative UDP-glucose 79.9 4.8 0.00012 20.3 6.6 70 3-81 143-212 (464)
345 PRK08229 2-dehydropantoate 2-r 79.8 2 5.1E-05 23.0 3.1 208 4-248 2-233 (341)
346 COG0499 SAM1 S-adenosylhomocys 79.6 4.9 0.00013 20.2 5.6 10 374-383 395-404 (420)
347 PTZ00117 malate dehydrogenase; 79.5 1.8 4.6E-05 23.3 2.8 64 4-80 1-76 (313)
348 cd01892 Miro2 Miro2 subfamily. 79.5 5 0.00013 20.2 5.9 136 3-140 3-154 (169)
349 cd04932 ACT_AKiii-LysC-EC_1 AC 79.4 3.6 9.1E-05 21.2 4.3 57 361-424 12-72 (75)
350 PRK08605 D-lactate dehydrogena 79.4 5 0.00013 20.2 7.3 19 4-22 1-19 (332)
351 TIGR02279 PaaC-3OHAcCoADH 3-hy 79.4 1.4 3.5E-05 24.2 2.2 166 1-195 2-213 (508)
352 cd05291 HicDH_like L-2-hydroxy 79.3 1.9 4.9E-05 23.1 3.0 20 6-25 2-21 (306)
353 PRK09034 aspartate kinase; Rev 78.9 5.2 0.00013 20.1 6.9 52 360-419 395-446 (450)
354 PRK05597 molybdopterin biosynt 78.9 5.2 0.00013 20.1 7.7 87 5-106 29-150 (355)
355 PRK07688 thiamine/molybdopteri 78.6 5.3 0.00013 20.0 7.6 34 5-48 25-58 (339)
356 cd00401 AdoHcyase S-adenosyl-L 78.5 5.3 0.00014 20.0 5.5 17 369-385 382-399 (413)
357 cd01337 MDH_glyoxysomal_mitoch 78.5 1.9 4.8E-05 23.2 2.7 21 5-25 1-22 (310)
358 COG1648 CysG Siroheme synthase 78.5 3 7.5E-05 21.8 3.7 127 5-146 13-141 (210)
359 PRK12475 thiamine/molybdopteri 78.4 5.4 0.00014 20.0 7.7 34 5-48 25-58 (337)
360 COG3603 Uncharacterized conser 78.1 4.1 0.0001 20.8 4.3 51 361-422 74-124 (128)
361 TIGR00657 asp_kinases aspartat 78.0 5.5 0.00014 19.9 6.0 55 146-202 189-245 (504)
362 PTZ00075 S-adenosyl-L-homocyst 78.0 3.9 0.0001 20.9 4.2 13 374-386 443-455 (476)
363 COG1023 Gnd Predicted 6-phosph 77.9 5.5 0.00014 19.9 6.3 22 5-26 1-22 (300)
364 TIGR01777 yfcH conserved hypot 77.9 4 0.0001 20.9 4.2 203 11-250 6-300 (307)
365 cd04877 ACT_TyrR N-terminal AC 77.8 5.6 0.00014 19.9 7.8 66 357-428 4-69 (74)
366 PRK07878 molybdopterin biosynt 77.7 5.6 0.00014 19.8 7.3 87 5-106 43-164 (392)
367 TIGR03023 WcaJ_sugtrans Undeca 77.3 5.8 0.00015 19.8 8.1 69 5-80 129-198 (451)
368 TIGR03025 EPS_sugtrans exopoly 77.2 5.8 0.00015 19.7 7.4 70 4-80 125-195 (445)
369 pfam01177 Asp_Glu_race Asp/Glu 77.0 5.9 0.00015 19.7 6.0 12 67-78 58-69 (212)
370 cd01338 MDH_choloroplast_like 76.4 3.2 8.2E-05 21.6 3.4 23 3-25 1-24 (322)
371 PRK09554 feoB ferrous iron tra 76.2 5.3 0.00014 20.0 4.5 138 3-141 2-159 (772)
372 PRK00907 hypothetical protein; 76.2 6.2 0.00016 19.6 6.1 75 349-424 13-89 (92)
373 TIGR01692 HIBADH 3-hydroxyisob 76.1 5.4 0.00014 20.0 4.5 110 10-139 2-121 (290)
374 pfam03721 UDPG_MGDP_dh_N UDP-g 76.1 2.5 6.4E-05 22.3 2.8 21 5-25 1-21 (185)
375 pfam02719 Polysacc_synt_2 Poly 75.8 4 0.0001 20.9 3.7 18 9-26 3-21 (280)
376 PRK07411 hypothetical protein; 75.6 6.4 0.00016 19.5 7.6 87 5-106 39-160 (390)
377 PRK05086 malate dehydrogenase; 75.2 2.8 7.1E-05 22.0 2.8 21 5-25 1-22 (312)
378 KOG0172 consensus 75.2 6.5 0.00017 19.4 5.9 146 6-163 4-183 (445)
379 cd05017 SIS_PGI_PMI_1 The memb 75.0 6.6 0.00017 19.4 7.4 48 75-129 45-94 (119)
380 PRK10309 galactitol-1-phosphat 74.4 6.8 0.00017 19.3 6.9 24 400-423 316-339 (347)
381 KOG4777 consensus 74.3 6.5 0.00017 19.4 4.5 138 6-171 5-159 (361)
382 KOG0069 consensus 74.2 3 7.7E-05 21.8 2.8 11 119-129 101-111 (336)
383 pfam00389 2-Hacid_dh D-isomer 74.1 6.9 0.00018 19.2 7.0 51 72-129 38-88 (313)
384 cd05290 LDH_3 A subgroup of L- 74.0 2.7 6.9E-05 22.1 2.5 65 6-82 1-77 (307)
385 cd04934 ACT_AK-Hom3_1 CT domai 73.6 7.1 0.00018 19.1 5.9 55 363-424 14-70 (73)
386 COG0059 IlvC Ketol-acid reduct 73.2 7.3 0.00019 19.1 5.3 81 5-102 19-105 (338)
387 PRK08762 molybdopterin biosynt 73.1 7.3 0.00019 19.0 7.7 27 56-82 41-67 (379)
388 PRK06035 3-hydroxyacyl-CoA deh 73.1 3.6 9.2E-05 21.2 3.0 185 5-209 4-247 (291)
389 TIGR01663 PNK-3'Pase polynucle 72.5 6.5 0.00016 19.4 4.1 47 90-136 411-460 (526)
390 pfam04359 DUF493 Protein of un 72.3 7.6 0.00019 18.9 8.5 76 348-424 10-87 (90)
391 cd01339 LDH-like_MDH L-lactate 72.2 7.6 0.00019 18.9 8.8 61 7-80 1-73 (300)
392 PRK05708 2-dehydropantoate 2-r 71.6 4.3 0.00011 20.7 3.1 22 4-25 2-23 (305)
393 TIGR01505 tartro_sem_red 2-hyd 71.5 7.9 0.0002 18.8 5.0 116 6-139 1-124 (291)
394 PRK00421 murC UDP-N-acetylmura 70.8 8.2 0.00021 18.7 6.5 86 3-104 7-96 (459)
395 PRK08125 bifunctional UDP-gluc 69.7 8.6 0.00022 18.5 5.5 140 5-182 1-145 (660)
396 PRK09310 aroDE bifunctional 3- 69.6 8.7 0.00022 18.5 6.7 51 174-227 196-248 (477)
397 pfam02254 TrkA_N TrkA-N domain 69.5 3.4 8.6E-05 21.4 2.1 87 7-106 1-96 (115)
398 PRK09987 dTDP-4-dehydrorhamnos 69.3 8.8 0.00022 18.5 6.1 100 5-130 1-101 (299)
399 TIGR03589 PseB UDP-N-acetylglu 69.2 8.8 0.00022 18.5 11.8 240 2-277 2-269 (324)
400 pfam04321 RmlD_sub_bind RmlD s 69.2 8.8 0.00022 18.5 6.1 98 7-133 1-99 (284)
401 COG0039 Mdh Malate/lactate deh 68.9 4.5 0.00011 20.5 2.7 20 5-24 1-20 (313)
402 TIGR02371 ala_DH_arch alanine 68.5 3.1 8E-05 21.6 1.8 83 4-103 129-221 (327)
403 TIGR02356 adenyl_thiF thiazole 68.4 9.1 0.00023 18.4 6.7 87 6-105 23-146 (210)
404 TIGR01133 murG undecaprenyldip 68.3 9.2 0.00023 18.3 7.5 195 1-208 2-268 (368)
405 PRK09864 putative fructose-spe 68.2 8.5 0.00022 18.6 4.0 84 110-195 58-154 (356)
406 KOG4354 consensus 68.1 8.4 0.00021 18.6 3.9 93 2-105 17-117 (340)
407 PRK01390 murD UDP-N-acetylmura 68.1 7.5 0.00019 19.0 3.7 86 5-104 10-98 (457)
408 PRK12549 shikimate 5-dehydroge 68.0 9.3 0.00024 18.3 6.6 36 1-40 1-37 (284)
409 cd04918 ACT_AK1-AT_2 ACT domai 67.7 9.5 0.00024 18.3 6.1 52 360-419 10-61 (65)
410 TIGR02197 heptose_epim ADP-L-g 67.6 9.5 0.00024 18.2 6.0 243 9-321 3-285 (353)
411 PRK08163 salicylate hydroxylas 67.5 6.5 0.00017 19.4 3.3 38 1-49 1-38 (396)
412 PRK10669 putative cation:proto 67.4 9.6 0.00024 18.2 4.6 10 294-303 418-427 (558)
413 COG2423 Predicted ornithine cy 67.1 9.7 0.00025 18.2 6.8 85 6-104 132-223 (330)
414 COG1064 AdhP Zn-dependent alco 66.5 10 0.00025 18.1 6.5 32 223-254 168-199 (339)
415 PRK05600 thiamine biosynthesis 66.3 10 0.00026 18.1 7.0 87 5-106 42-163 (370)
416 KOG0068 consensus 66.1 10 0.00026 18.0 4.7 58 362-426 345-402 (406)
417 PTZ00079 NADP-specific glutama 65.9 10 0.00026 18.0 9.8 15 188-202 246-260 (469)
418 pfam05368 NmrA NmrA-like famil 65.4 10 0.00027 18.0 5.7 34 7-51 1-35 (232)
419 PRK09084 aspartate kinase III; 65.4 10 0.00027 18.0 5.9 280 107-419 109-443 (447)
420 TIGR01035 hemA glutamyl-tRNA r 65.3 10 0.00027 17.9 6.2 85 4-100 185-279 (436)
421 PRK06847 hypothetical protein; 65.2 7.8 0.0002 18.8 3.3 38 1-49 1-38 (375)
422 COG0370 FeoB Fe2+ transport sy 65.0 11 0.00027 17.9 6.4 134 3-137 2-151 (653)
423 PRK08841 aspartate kinase; Val 64.9 11 0.00027 17.9 6.8 246 143-419 120-374 (392)
424 COG1062 AdhC Zn-dependent alco 64.6 11 0.00027 17.9 6.8 27 400-426 337-363 (366)
425 KOG1198 consensus 64.4 11 0.00028 17.8 7.6 55 354-427 287-341 (347)
426 PRK08850 2-octaprenyl-6-methox 64.2 7 0.00018 19.2 2.9 32 1-40 1-32 (405)
427 cd00300 LDH_like L-lactate deh 63.6 5.4 0.00014 19.9 2.3 62 7-80 1-73 (300)
428 TIGR01763 MalateDH_bact malate 63.6 6.7 0.00017 19.3 2.7 65 5-78 2-77 (308)
429 PRK07045 putative monooxygenas 63.3 7.6 0.00019 18.9 3.0 32 1-40 1-33 (388)
430 PRK05479 ketol-acid reductoiso 63.2 11 0.00029 17.7 5.4 197 5-247 18-220 (336)
431 PRK09181 aspartate kinase; Val 62.7 12 0.0003 17.6 6.5 50 362-419 414-463 (476)
432 KOG3923 consensus 62.7 12 0.0003 17.6 4.3 46 2-50 1-46 (342)
433 COG1250 FadB 3-hydroxyacyl-CoA 62.4 8.1 0.00021 18.7 3.0 188 4-208 3-243 (307)
434 cd01492 Aos1_SUMO Ubiquitin ac 62.4 12 0.0003 17.6 7.6 34 5-48 22-55 (197)
435 KOG2733 consensus 62.4 12 0.0003 17.6 6.8 158 1-168 1-185 (423)
436 PRK03815 murD UDP-N-acetylmura 62.4 6.6 0.00017 19.3 2.5 22 5-26 1-22 (401)
437 TIGR01381 E1_like_apg7 E1-like 61.9 5.5 0.00014 19.9 2.0 37 147-184 366-402 (689)
438 PRK02047 hypothetical protein; 61.8 12 0.00031 17.5 8.1 76 348-424 11-88 (91)
439 PRK01911 ppnK inorganic polyph 61.1 12 0.00032 17.4 5.6 33 156-191 89-121 (290)
440 TIGR00745 apbA_panE 2-dehydrop 59.7 7.8 0.0002 18.8 2.5 20 6-25 1-20 (332)
441 TIGR00719 sda_beta L-serine de 59.5 6.8 0.00017 19.3 2.2 146 205-406 25-197 (208)
442 cd03360 LbH_AT_putative Putati 59.4 13 0.00034 17.2 6.0 83 9-102 1-83 (197)
443 COG1102 Cmk Cytidylate kinase 59.0 2.9 7.5E-05 21.8 0.2 17 173-189 111-127 (179)
444 PRK02006 murD UDP-N-acetylmura 58.2 14 0.00035 17.1 5.8 129 4-152 7-173 (501)
445 TIGR02992 ectoine_eutC ectoine 58.1 2.9 7.3E-05 21.9 0.0 82 6-104 131-222 (326)
446 KOG0781 consensus 57.8 14 0.00036 17.1 7.7 83 236-327 367-469 (587)
447 pfam00585 Thr_dehydrat_C C-ter 57.6 14 0.00036 17.0 8.3 69 351-422 8-76 (91)
448 cd04119 RJL RJL (RabJ-Like) su 57.5 14 0.00036 17.0 6.2 140 5-147 1-162 (168)
449 KOG0024 consensus 57.4 14 0.00036 17.0 7.1 69 173-248 141-217 (354)
450 PRK06091 membrane protein FdrA 57.2 14 0.00036 17.0 4.2 275 71-382 115-479 (555)
451 COG1810 Uncharacterized protei 56.8 15 0.00037 16.9 10.0 192 4-219 1-219 (224)
452 COG0677 WecC UDP-N-acetyl-D-ma 56.7 15 0.00037 16.9 6.2 87 4-104 9-126 (436)
453 COG1893 ApbA Ketopantoate redu 56.7 12 0.00031 17.5 3.0 21 5-25 1-21 (307)
454 PRK08774 consensus 55.9 9.7 0.00025 18.2 2.5 32 1-40 1-32 (402)
455 TIGR01915 npdG NADPH-dependent 55.5 10 0.00025 18.1 2.5 199 5-252 1-230 (233)
456 PRK10537 voltage-gated potassi 55.4 15 0.00039 16.8 8.6 13 9-21 209-221 (356)
457 pfam02558 ApbA Ketopantoate re 55.2 15 0.00039 16.8 5.3 88 7-108 1-102 (150)
458 PRK05925 aspartate kinase; Pro 55.2 15 0.00039 16.8 5.6 263 135-428 144-438 (440)
459 KOG2304 consensus 54.9 7.3 0.00019 19.1 1.7 33 1-41 8-40 (298)
460 TIGR02852 spore_dpaB dipicolin 54.6 16 0.0004 16.7 6.3 115 10-128 3-147 (188)
461 PRK04998 hypothetical protein; 54.6 16 0.0004 16.7 7.5 79 345-424 7-85 (88)
462 pfam07991 IlvN Acetohydroxy ac 54.5 16 0.0004 16.7 5.5 156 3-193 3-164 (165)
463 TIGR00873 gnd 6-phosphoglucona 53.9 7.1 0.00018 19.1 1.5 57 6-73 1-65 (480)
464 cd00704 MDH Malate dehydrogena 52.7 13 0.00032 17.4 2.6 21 5-25 1-22 (323)
465 PRK00711 D-amino acid dehydrog 51.8 14 0.00036 17.0 2.7 21 5-25 1-21 (416)
466 cd04115 Rab33B_Rab33A Rab33B/R 51.7 17 0.00044 16.4 5.6 128 3-135 1-149 (170)
467 PRK03692 putative UDP-N-acetyl 51.6 18 0.00045 16.4 4.4 51 102-158 41-93 (246)
468 PRK08020 ubiF 2-octaprenyl-3-m 50.8 17 0.00044 16.4 3.0 25 1-25 1-26 (391)
469 PRK07589 ornithine cyclodeamin 50.4 18 0.00046 16.3 6.6 84 6-103 131-222 (346)
470 cd00650 LDH_MDH_like NAD-depen 50.4 18 0.00047 16.3 6.0 99 7-122 1-111 (263)
471 TIGR03649 ergot_EASG ergot alk 50.3 18 0.00047 16.2 7.4 54 199-255 169-224 (285)
472 KOG1368 consensus 50.2 13 0.00033 17.3 2.4 54 111-167 174-242 (384)
473 PRK05854 short chain dehydroge 49.8 16 0.00041 16.6 2.8 26 81-106 20-45 (314)
474 PRK10084 dTDP-glucose 4,6 dehy 49.7 16 0.00041 16.7 2.7 22 5-26 1-23 (352)
475 KOG3820 consensus 49.6 19 0.00048 16.2 7.4 23 117-139 131-153 (461)
476 PRK00072 hemC porphobilinogen 49.1 19 0.00049 16.1 4.7 75 1-80 1-80 (300)
477 cd01886 EF-G Elongation factor 48.9 19 0.00049 16.1 6.8 21 6-26 1-22 (270)
478 COG0027 PurT Formate-dependent 48.6 19 0.00049 16.1 7.4 109 2-124 10-124 (394)
479 TIGR02667 moaB_proteo molybden 48.5 12 0.00031 17.5 2.0 32 65-97 55-86 (163)
480 PRK07236 hypothetical protein; 48.2 18 0.00047 16.2 2.9 37 1-48 1-39 (386)
481 KOG1430 consensus 48.1 18 0.00045 16.3 2.8 28 1-28 1-29 (361)
482 TIGR02520 pilus_B_mal_scr type 48.0 20 0.0005 16.0 3.0 223 97-387 49-296 (536)
483 cd01484 E1-2_like Ubiquitin ac 46.8 16 0.00041 16.6 2.4 194 6-230 1-210 (234)
484 COG2403 Predicted GTPase [Gene 46.0 11 0.00029 17.7 1.5 89 1-101 3-111 (449)
485 PRK05875 short chain dehydroge 45.8 21 0.00054 15.8 7.4 31 8-49 11-42 (277)
486 COG3268 Uncharacterized conser 45.8 21 0.00054 15.8 7.6 123 3-140 5-139 (382)
487 TIGR01941 nqrF NADH:ubiquinone 45.4 22 0.00055 15.7 3.7 81 273-359 256-350 (425)
488 TIGR00963 secA preprotein tran 44.9 12 0.00031 17.5 1.5 89 232-324 614-709 (904)
489 TIGR01235 pyruv_carbox pyruvat 44.7 22 0.00056 15.7 5.0 50 93-143 125-177 (1169)
490 PRK11613 folP dihydropteroate 44.2 23 0.00057 15.6 4.2 106 84-214 95-204 (282)
491 PRK06753 hypothetical protein; 43.5 23 0.00059 15.5 2.9 34 5-49 1-34 (373)
492 PRK13789 phosphoribosylamine-- 43.3 23 0.00059 15.5 8.8 97 1-109 1-102 (426)
493 PRK10754 quinone oxidoreductas 43.1 23 0.0006 15.5 4.5 33 397-430 294-326 (327)
494 TIGR02440 FadJ fatty oxidation 43.0 15 0.00039 16.8 1.8 172 5-215 308-511 (732)
495 cd05191 NAD_bind_amino_acid_DH 43.0 23 0.0006 15.5 6.0 22 5-26 24-45 (86)
496 PHA00368 internal virion prote 42.8 5.6 0.00014 19.9 -0.5 11 114-124 298-308 (1316)
497 pfam05343 Peptidase_M42 M42 gl 41.7 25 0.00062 15.4 3.3 68 71-138 181-250 (292)
498 TIGR02632 RhaD_aldol-ADH rhamn 41.5 25 0.00063 15.3 3.7 55 77-136 426-480 (709)
499 COG1091 RfbD dTDP-4-dehydrorha 41.4 25 0.00063 15.3 5.4 99 5-133 1-100 (281)
500 PRK13949 shikimate kinase; Pro 41.3 18 0.00046 16.3 1.9 23 1-23 1-25 (169)
No 1
>PRK06349 homoserine dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=1004.42 Aligned_cols=430 Identities=39% Similarity=0.616 Sum_probs=410.1
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEEECC
Q ss_conf 87269999825667899999999989999997399659999982685200278877102207888984488998999864
Q gi|254780900|r 2 AGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFVELI 81 (438)
Q Consensus 2 sk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVVEli 81 (438)
.|++||||+||||||+|++++|.++++.+.+++|.++++++|++|+.+|+|.++.+...|++|+.++++|++||+|||+|
T Consensus 1 M~~ikIgl~G~GtVG~gv~~il~~~~~~i~~~~g~~~~i~~i~~r~~~k~r~~~~~~~~~t~d~~~i~~d~~idivVEli 80 (432)
T PRK06349 1 MKPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLSGYLLTTDPEELVNDPDIDIVVELM 80 (432)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCEEECCHHHHHCCCCCCEEEEEC
T ss_conf 95538999987806999999999809999998699769999996897535589998555547999994389998999966
Q ss_pred CCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 88885113578888632702885041778876899998753139669960564530131899987641286203433314
Q gi|254780900|r 82 GGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILKNYVEYDEINRVYGIIN 161 (438)
Q Consensus 82 Gg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~~~l~~~~i~~i~GIln 161 (438)
||.+ ||++++++||++|||||||||+++|.||+||+++|+++|+.|+||||||||||||++|+++|++|+|.+|+||||
T Consensus 81 GG~~-~A~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~fEAaV~GGIPiI~~l~~~l~~~~i~~i~GIlN 159 (432)
T PRK06349 81 GGIE-PARELILAALEAGKHVVTANKALLAVHGNELFAAAEEKGVDLYFEAAVAGGIPIIKALREGLAANRITRVMGIVN 159 (432)
T ss_pred CCCH-HHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 9950-799999999985996892587999867999999998719649996322466120699987640477437767624
Q ss_pred CCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHH
Q ss_conf 20000000010068778899887876176156532232117899999999999818855531000122320476740347
Q gi|254780900|r 162 GTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHKIAILSAIAFGIDTSVEGVYCEGISNITLEDIRGA 241 (438)
Q Consensus 162 GT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa~~~~g~~~~~~~v~~~gI~~i~~~di~~a 241 (438)
||||||||+|+++|.+|++||+|||+|||||+|||+||+|||||||++|||+++||.++++++++++||++|+++||+||
T Consensus 160 GTtNyILt~M~~~g~~f~~aL~eAQ~lGyAEaDPt~Dv~G~Daa~Kl~ILa~lafg~~~~~~~i~~~GI~~i~~~Di~~A 239 (432)
T PRK06349 160 GTTNYILTKMTEEGLSFEDALKEAQALGYAEADPTFDVEGIDAAHKLAILASLAFGTPVDFDDVYVEGISKITAEDIAYA 239 (432)
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHHHHHH
T ss_conf 73679999998719999999999998285667987653218899999999999829977857555468676999999999
Q ss_pred HHCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 87198587410133136783569999864167730003665416898311310058972687666102068899999974
Q gi|254780900|r 242 ADFGYCIKFLAMARRKGKGIIRYVYPVLLKYDSVMALVDGITNAVVIETNGLGKLTMTGPGAGGSATASAVLGDICSIAK 321 (438)
Q Consensus 242 ~~~g~~ikli~~~~~~~~~i~~~V~P~li~~~~~la~v~g~~Nai~i~~~~~g~~~~~G~GAG~~~TAsaV~sDli~i~~ 321 (438)
+++||+|||+|.+++.+++++++|+|+++|++||||+|+|++|||.++||.+|+++|+|||||+.||||||+|||++++|
T Consensus 240 ~~~G~~iKlla~~~~~~~~~~~~V~P~lv~~~~~la~v~g~~Nav~v~~~~~g~~~~~G~GAG~~pTasaVvsDii~iar 319 (432)
T PRK06349 240 EELGYRIKLLGIAKRTEEGIELRVHPTLIPKSHPLANVNGVMNAVFVEGDAVGETMFYGPGAGGLPTASAVVADLVDIAR 319 (432)
T ss_pred HHCCCEEEEEEEEEECCCEEEEEEEEEECCCCCHHHHCCCCCEEEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 98799799999999729859999998663898956534797249999723348679997898988628889999999984
Q ss_pred CCCCCCCCCC--CCCCCCCCCCCCCCCHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEE
Q ss_conf 1777765566--66783100234438853446532799992488874899999988669957888822677877613599
Q gi|254780900|r 322 TNTQKSVSWA--LGKESSSFSVIHCDGVYEEEKEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVF 399 (438)
Q Consensus 322 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IV 399 (438)
+......... ++.+ ......++.+++++.++|||||+|.|+||||++||++|++|+|||++++|++.. ++.+|+|
T Consensus 320 ~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~i~s~yYLRl~V~D~PGVLa~It~ila~~~ISI~sviQ~~~~--~~~a~iV 396 (432)
T PRK06349 320 NLTGDPGHRVPHLGFP-PDALDLPLAPMEEIETKYYLRLLVADKPGVLAKIAAIFAENGVSIESILQKGAD--DDGAEIV 396 (432)
T ss_pred HHCCCCCCCCCCCCCC-CCCCCCCCCCHHHCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCC--CCCEEEE
T ss_conf 4134666778765667-531247647823334546999985675037999999998769862477764888--9953699
Q ss_pred EEEEECCHHHHHHHHHHHHCCCCCCCCCEEEECCCC
Q ss_conf 992104889999999986238300047357662674
Q gi|254780900|r 400 MITHKVSGKLIRDAIECFNGKSDAIRYSCVICIENF 435 (438)
Q Consensus 400 iiTh~~~e~~i~~ai~~i~~l~~v~~~~~~IRIE~~ 435 (438)
|+||+|+|+++++++++|+++++|.++|++||||++
T Consensus 397 iiTh~~~e~~i~~Al~eI~~L~~V~~~~~~IRIE~l 432 (432)
T PRK06349 397 VVTHETSEAALRAALAAIEALDVVVGVPSVIRIEGL 432 (432)
T ss_pred EEECCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCC
T ss_conf 991628799999999998749652578737964689
No 2
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=726.51 Aligned_cols=323 Identities=45% Similarity=0.677 Sum_probs=311.7
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCC-CHHCCCH-----HHHHCCCCCC
Q ss_conf 872699998256678999999999899999973996599999826852002788771-0220788-----8984488998
Q gi|254780900|r 2 AGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLR-YEWFDDP-----LIMAGEADID 75 (438)
Q Consensus 2 sk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~-~~~~~d~-----~~li~~~~ID 75 (438)
.+++||+|+|+|+||++++++|.++++.+..+.|.++++++|++|+..+.++.+... ..|++|. .+++.++++|
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDID 80 (333)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCHHHHEECCCCCCCHHHHCCCCCC
T ss_conf 95489999833714299999999826888763287269999996153011356653323430055324427665045688
Q ss_pred EEEECCCCCCCCHH--HHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99986488885113--5788886327028850417788768999987531396699605645301318999876412862
Q gi|254780900|r 76 VFVELIGGEDYPAY--DAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILKNYVEYDEI 153 (438)
Q Consensus 76 vVVEliGg~~~pA~--~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~~~l~~~~i 153 (438)
+|||+||+.-.++. +++++||++|||||||||+++|.||+||+++|+++|+.|+||||||||+|||++||++|+||+|
T Consensus 81 vvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiPiI~~lr~~l~g~~I 160 (333)
T COG0460 81 VVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIPIIKLLRELLAGDEI 160 (333)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHCCCCCE
T ss_conf 79855766687412389999999759969978964767669999999997398589985502575437898741265726
Q ss_pred EEEEEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHC
Q ss_conf 03433314200000000100687788998878761761565322321178999999999998188555310001223204
Q gi|254780900|r 154 NRVYGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHKIAILSAIAFGIDTSVEGVYCEGISNI 233 (438)
Q Consensus 154 ~~i~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa~~~~g~~~~~~~v~~~gI~~i 233 (438)
.+|+||||||||||||+|++++.+|+++|+|||+|||||||||+||+|+|+|||++|||+++||.+++++||++|||+.+
T Consensus 161 ~~i~GIlNGT~NyIlt~m~~~~~~f~dal~eAq~lGyAE~DPt~DleG~DaA~Kl~ILa~~~~g~~~~~~DV~veGI~~i 240 (333)
T COG0460 161 LSIRGILNGTTNYILTRMEEGGLSFEDALAEAQELGYAEADPTDDLEGIDAARKLVILARLAFGTPETLDDVEVEGITPI 240 (333)
T ss_pred EEEEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHEEEECCCCC
T ss_conf 99999992639999999872699999999999981888899777764568999999999997299777112468467679
Q ss_pred CHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCHHHHH
Q ss_conf 76740347871985874101331367835699998641677300036654168983113100589726876661020688
Q gi|254780900|r 234 TLEDIRGAADFGYCIKFLAMARRKGKGIIRYVYPVLLKYDSVMALVDGITNAVVIETNGLGKLTMTGPGAGGSATASAVL 313 (438)
Q Consensus 234 ~~~di~~a~~~g~~ikli~~~~~~~~~i~~~V~P~li~~~~~la~v~g~~Nai~i~~~~~g~~~~~G~GAG~~~TAsaV~ 313 (438)
+++|+++|+++||++||+|.++..+++++++|+|+++|.+||||+|+|++||+.|+||.+|+++++|||||+.||||||+
T Consensus 241 ~~~d~~~A~~~G~~iklvg~~~~~~~~~~~~V~p~~vp~~~pLa~V~g~~Nav~i~td~~g~l~~~G~GAG~~~TAsaV~ 320 (333)
T COG0460 241 TPEDIEFAKELGYVIKLVGIADKTGKGIEARVHPTLVPKDHPLASVNGVMNAVAIETDAYGPLVLYGPGAGGEVTASAVL 320 (333)
T ss_pred CHHHHHHHHHCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCCEECCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 97789999857967999999973488337999768957999623517852599997111543899837988422199999
Q ss_pred HHHHHHHHCCC
Q ss_conf 99999974177
Q gi|254780900|r 314 GDICSIAKTNT 324 (438)
Q Consensus 314 sDli~i~~~~~ 324 (438)
+||+++++...
T Consensus 321 sDli~i~~~~~ 331 (333)
T COG0460 321 SDLLRIARLKV 331 (333)
T ss_pred HHHHHHHHHCC
T ss_conf 99999997446
No 3
>PRK06270 homoserine dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=699.32 Aligned_cols=316 Identities=37% Similarity=0.532 Sum_probs=292.9
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC--CCCCC----------------CCCCHHCCCH
Q ss_conf 26999982566789999999998999999739965999998268520--02788----------------7710220788
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI--DRGID----------------CLRYEWFDDP 65 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k--~~~~~----------------~~~~~~~~d~ 65 (438)
.|||+|+|||+||++++++|.++++.+++++|.++++++|++++... .++++ .+......++
T Consensus 2 ~i~I~l~G~G~VG~~~~~~l~~~~~~l~~~~g~~l~v~~i~~s~~~~~~~~gid~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (342)
T PRK06270 2 EMKIALVGFGGVGQGLAELLAMKNEYLKKEYGLDLKVVAIADSSGAAIDPNGLDLELALKVKEETGKLADYPEGGGEIDG 81 (342)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 63199987688999999999987999999849978999999165433576678989998766411650003200012789
Q ss_pred HHHHCCCCCCEEEECC----CCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH
Q ss_conf 8984488998999864----888851135788886327028850417788768999987531396699605645301318
Q gi|254780900|r 66 LIMAGEADIDVFVELI----GGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPII 141 (438)
Q Consensus 66 ~~li~~~~IDvVVEli----Gg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii 141 (438)
.+++.++++|+|||++ ++. .|+++++++||++|||||||||+++|.||+||+++|+++|+.|+||||||||+|||
T Consensus 82 ~~~~~~~~~dvvve~t~~~~~~~-e~a~~~~~~aL~~G~~VVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggGlPiI 160 (342)
T PRK06270 82 LEVIKSAEADVLVEATPTNIETG-EPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKENGVCFRYEATVGGAMPII 160 (342)
T ss_pred HHHHCCCCCCEEEEEECCCCCCC-HHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCH
T ss_conf 99842779998999304467774-88999999999779949998871789889999999997298499854411153538
Q ss_pred HHHHHHHHCCCCEEEEEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99987641286203433314200000000100687788998878761761565322321178999999999998188555
Q gi|254780900|r 142 RILKNYVEYDEINRVYGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHKIAILSAIAFGIDTS 221 (438)
Q Consensus 142 ~~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa~~~~g~~~~ 221 (438)
++|+++|+||+|++|+||||||||||||+|+++|.+|+++|++||++||||||||+||+|+|+|||++|||+++||.+++
T Consensus 161 ~~l~~~l~gd~I~~I~GIlnGT~nyIL~~m~~~g~~F~~alkeAq~lGyaE~DP~~Dl~G~Daa~Kl~ILa~~~~g~~~~ 240 (342)
T PRK06270 161 RLAKETLAGNDIKSIKGILNGTTNYILTRMEEEGLSYDQALKEAQELGYAEADPTYDVEGIDAALKVVILANSILGADLT 240 (342)
T ss_pred HHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 98985307888458998867715898888775599899999999973998899521016885789999999998099988
Q ss_pred CCCCHHHHHHHCCHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEEEEC
Q ss_conf 31000122320476740347871985874101331367835699998641677300036654168983113100589726
Q gi|254780900|r 222 VEGVYCEGISNITLEDIRGAADFGYCIKFLAMARRKGKGIIRYVYPVLLKYDSVMALVDGITNAVVIETNGLGKLTMTGP 301 (438)
Q Consensus 222 ~~~v~~~gI~~i~~~di~~a~~~g~~ikli~~~~~~~~~i~~~V~P~li~~~~~la~v~g~~Nai~i~~~~~g~~~~~G~ 301 (438)
++||+++||++++++|+++|+++||++||||.++..+. .++|+|+++|++|||+ |+|++|+|.|+|+.+|+++++||
T Consensus 241 ~~dv~~~gI~~i~~~di~~A~~~G~~iklva~~~~~~~--~~~V~p~~v~~~~pla-v~g~~N~i~i~t~~~g~l~~~G~ 317 (342)
T PRK06270 241 LKDVEVTGITRITPEAIRLAAKEGYRIKLIGEVSREAD--KLSVSPRLVPIGHPLA-VSGTLNAATFETDLAGDVTVSGP 317 (342)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCC--EEEEEEEEECCCCCEE-ECCCCEEEEEEEEECCCEEEEEC
T ss_conf 56503478565999999999987996999999997898--8999989988999324-78985799998451685899978
Q ss_pred CCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 8766610206889999997417
Q gi|254780900|r 302 GAGGSATASAVLGDICSIAKTN 323 (438)
Q Consensus 302 GAG~~~TAsaV~sDli~i~~~~ 323 (438)
|||++||||||++||++|+|..
T Consensus 318 GAG~~~TAsaVlsDll~ia~~~ 339 (342)
T PRK06270 318 GAGSIETASAILSDLIAIHDRG 339 (342)
T ss_pred CCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9891460999999999998632
No 4
>PRK06813 homoserine dehydrogenase; Validated
Probab=100.00 E-value=0 Score=693.29 Aligned_cols=320 Identities=24% Similarity=0.386 Sum_probs=290.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHC---------C-----CHHH-H
Q ss_conf 26999982566789999999998999999739965999998268520027887710220---------7-----8889-8
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWF---------D-----DPLI-M 68 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~---------~-----d~~~-l 68 (438)
.|||+|+|||+||++++++|.++++.+++++|.++++++|++|+....+...++...|. . .+.+ .
T Consensus 2 ~i~I~l~G~G~VG~~~~~~l~~~~~~l~~~~g~~l~i~~i~~s~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (341)
T PRK06813 2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSAAIEKYIEHHPEERA 81 (341)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHCCCCCCCHHHHHHCCCCCHHHHHHHHHCHHHHH
T ss_conf 60299995388999999999999999999749977999999686011376688878987503530235555542346663
Q ss_pred HCCCCCCEEEECCCC---CCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 448899899986488---88511357888863270288504177887689999875313966996056453013189998
Q gi|254780900|r 69 AGEADIDVFVELIGG---EDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILK 145 (438)
Q Consensus 69 i~~~~IDvVVEliGg---~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~ 145 (438)
..+.+.|++||++.. ...|+++|+++||++|||||||||+++|.||+||+++|+++|+.|+||||||||+|||++++
T Consensus 82 ~~~~~~~i~vd~t~~~~~~~~~a~~~i~~al~~g~~VVTANK~~la~~~~el~~la~~~~~~~~yEasVggGiPiI~~l~ 161 (341)
T PRK06813 82 TDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKQMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAALPTLDIGQ 161 (341)
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCHHHHHHH
T ss_conf 03556766999112213576458999999997299689327477775399999999973991899704011402526666
Q ss_pred HHHHCCCCEEEEEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 76412862034333142000000001006877889988787617615653223211789999999999981885553100
Q gi|254780900|r 146 NYVEYDEINRVYGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHKIAILSAIAFGIDTSVEGV 225 (438)
Q Consensus 146 ~~l~~~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa~~~~g~~~~~~~v 225 (438)
++++||+|++|+||||||||||||+|+++|.+|+|+|++||++||||||||+||+|+|+|||++|||+++||.+++++||
T Consensus 162 ~~l~gd~I~~I~GIlnGT~nyIlt~m~~~g~~F~eal~eAq~lGyaE~DP~~Dl~G~Daa~Kl~ILA~~~~g~~~~~~dv 241 (341)
T PRK06813 162 FSLAGCHIEKIEGILNGTTNYILTKMNEEDITFEEALKEAQSKGIAETNPILDISGSDSACKLLLLTNSLMGTENSLTDI 241 (341)
T ss_pred HHCCCCCEEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHC
T ss_conf 53345735799999937079998888718997899999998659999897534456447876999989981998783540
Q ss_pred HHHHHHHCCHHHHHHHHHCCCEEEEEEEEEECCC-CCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCC
Q ss_conf 0122320476740347871985874101331367-835699998641677300036654168983113100589726876
Q gi|254780900|r 226 YCEGISNITLEDIRGAADFGYCIKFLAMARRKGK-GIIRYVYPVLLKYDSVMALVDGITNAVVIETNGLGKLTMTGPGAG 304 (438)
Q Consensus 226 ~~~gI~~i~~~di~~a~~~g~~ikli~~~~~~~~-~i~~~V~P~li~~~~~la~v~g~~Nai~i~~~~~g~~~~~G~GAG 304 (438)
+++||++++++|+++|+++||++||||.+.+.++ .+.++|+|++||++||||+|+|++|+|.++||.+|+++++|||||
T Consensus 242 ~~~GI~~i~~~di~~A~~~g~~iklva~~~~~~~g~~~~~V~p~~v~~~~pla~v~g~~N~v~i~td~~g~~~~~G~GAG 321 (341)
T PRK06813 242 HIKGIEHVTKQQIRNAKEQNKIIKLIASAYKDNEGNVNLNVEPYKIEKNHPLANVNGTEKGITFFTDTMGQVTTIGGASN 321 (341)
T ss_pred CCCCHHHHCHHHHHHHHHCCCEEEEEEEEEECCCCEEEEEEEEEEECCCCCCEECCCCCEEEEEEEEECCCEEEEECCCC
T ss_conf 11672230999999999779969999999972697499999999958999552057984799997168785779978989
Q ss_pred CCCCHHHHHHHHHHHHHCC
Q ss_conf 6610206889999997417
Q gi|254780900|r 305 GSATASAVLGDICSIAKTN 323 (438)
Q Consensus 305 ~~~TAsaV~sDli~i~~~~ 323 (438)
+.||||||++||++++|+.
T Consensus 322 ~~~TAsaV~sDii~iar~~ 340 (341)
T PRK06813 322 PRGAAAAALKDVINLYRKD 340 (341)
T ss_pred CHHHHHHHHHHHHHHHHCC
T ss_conf 0774999999999986047
No 5
>PRK06392 homoserine dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=656.62 Aligned_cols=309 Identities=25% Similarity=0.355 Sum_probs=273.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC--CCCCCCCCCC------------HHCCCHHHHHC
Q ss_conf 699998256678999999999899999973996599999826852--0027887710------------22078889844
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKN--IDRGIDCLRY------------EWFDDPLIMAG 70 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~--k~~~~~~~~~------------~~~~d~~~li~ 70 (438)
|||||+|||+||++++++|.++++. .+.+.+++++++++++.. +++++++... .+.....+.+.
T Consensus 1 i~I~l~G~G~VG~~v~~~l~~~~~~--~~~~~~i~vv~v~~s~~~~~~~~gid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDD--RRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIF 78 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHH--HHHCCCCEEEEEEECCHHCCCCCCCCHHHHHCCCCCCCCCCCCHHCCCHHHHH
T ss_conf 9799995788999999999974999--98489937999996101014656889888521223234444420004445664
Q ss_pred CCCCCEEEECCCCC--CCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 88998999864888--8511357888863270288504177887689999875313966996056453013189998764
Q gi|254780900|r 71 EADIDVFVELIGGE--DYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILKNYV 148 (438)
Q Consensus 71 ~~~IDvVVEliGg~--~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~~~l 148 (438)
+.++|++||++++. ..|+++++++||++|||||||||+++|.||+||+++|+++|+.|+||||||||+|||+++++++
T Consensus 79 ~~~~dvive~~~~~~~g~~~~~~~~~aL~~GkhVVTANK~~la~~~~eL~~lA~~~~~~~~yEAsV~gGiPii~~l~~~l 158 (326)
T PRK06392 79 EIKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVPLFSLRDYST 158 (326)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHH
T ss_conf 56898799930277544226999999998799699779606666199999999980984999754036623179888676
Q ss_pred HCCCCEEEEEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 12862034333142000000001006877889988787617615653223211789999999999981885553100012
Q gi|254780900|r 149 EYDEINRVYGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHKIAILSAIAFGIDTSVEGVYCE 228 (438)
Q Consensus 149 ~~~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa~~~~g~~~~~~~v~~~ 228 (438)
++|+|++|+||||||||||||+|+ +|.+|+|+|+|||++||||||||+||+|||+|||++|||+++||.++++++|+++
T Consensus 159 ~~~~I~~i~GIlNGT~NyILt~m~-~g~~f~eaL~eAq~lGyAE~DPt~Dv~G~DaA~Kl~ILa~~afg~~~~~~dv~~e 237 (326)
T PRK06392 159 LPSRIKNFRGIVSSTINYVIRQEA-NGRGFLDVVKIAQKMGIAETNYSDDLMGLDAARKSVILANHLFGKDYTLRDVTYD 237 (326)
T ss_pred HCCCCEEEEEEEECCHHHHHHHHH-CCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHEEEC
T ss_conf 468850799998275899999887-7998999999999749899998778788889999999999984999878991376
Q ss_pred HHHHCCHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCC
Q ss_conf 23204767403478719858741013313678356999986416773000366541689831131005897268766610
Q gi|254780900|r 229 GISNITLEDIRGAADFGYCIKFLAMARRKGKGIIRYVYPVLLKYDSVMALVDGITNAVVIETNGLGKLTMTGPGAGGSAT 308 (438)
Q Consensus 229 gI~~i~~~di~~a~~~g~~ikli~~~~~~~~~i~~~V~P~li~~~~~la~v~g~~Nai~i~~~~~g~~~~~G~GAG~~~T 308 (438)
||++|+..+. +..|+++.+...++++.++|.|+++|++|||++|+|.+|+|.++||.+|+++++|||||+.||
T Consensus 238 GI~~I~~~~~-------~~~kli~~~~~~~~~~~~~v~~~~~~~~~~La~v~~~~nav~i~~d~~G~~~~~G~GAG~~pT 310 (326)
T PRK06392 238 GIENIDRSSM-------DNERLVTEVAMINGGPHAESRIRSLSRNDFLGMIGPLSLGYQMETDINGTINVSDNYDGPYET 310 (326)
T ss_pred CHHHHCHHHH-------HHCCHHHEEEEECCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCHHH
T ss_conf 8035478876-------401042114454694489997678789985614578537999982227868999689880360
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 206889999997417
Q gi|254780900|r 309 ASAVLGDICSIAKTN 323 (438)
Q Consensus 309 AsaV~sDli~i~~~~ 323 (438)
||||++||++++|+.
T Consensus 311 AsAVvsDlv~lar~k 325 (326)
T PRK06392 311 AGAVVNDVMLLSKYK 325 (326)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999997555
No 6
>PRK08374 homoserine dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=633.13 Aligned_cols=296 Identities=32% Similarity=0.437 Sum_probs=262.3
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCC-----------------CCHHCCCHH
Q ss_conf 269999825667899999999989999997399659999982685200278877-----------------102207888
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCL-----------------RYEWFDDPL 66 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~-----------------~~~~~~d~~ 66 (438)
.|||||+|||+||++++++|.++++. ++.++++++|++|+.....++++. ...+..++.
T Consensus 2 ~i~I~l~G~G~VG~~~~~~L~~~~~~----~g~~l~vv~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (316)
T PRK08374 2 EVKVSLFGFGTVGRALAEILAEKSRV----FGVELKVVSITDRSGTVWGDFDLLEAKEVKESTGKLSNIGDYEVYNFTPE 77 (316)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHH----HCCCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCHH
T ss_conf 51299993388999999999971887----29865999999556763456555665553320254344553012048989
Q ss_pred HHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 98448899899986488885113578888632702885041778876899998753139669960564530131899987
Q gi|254780900|r 67 IMAGEADIDVFVELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILKN 146 (438)
Q Consensus 67 ~li~~~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~~ 146 (438)
+++.++++|+|||++|+ + ++++++++||++|||||||||+++|.||+||+++|+++|+.|+||||||||+|||++||+
T Consensus 78 ~i~~~~~~dvvVd~t~~-~-~~~~~~~~al~~G~hVVTANK~~lA~~~~eL~~~A~~~~~~~~yEasVggGiPiI~~lr~ 155 (316)
T PRK08374 78 EIVEEVDPDIVVDVSSW-D-EAHEWYLTALKEGKSVVTSNKPPIANHYDELLNEANERNLGYFFEATVMAGTPIIGLLRE 155 (316)
T ss_pred HHHCCCCCCEEEECCCC-H-HHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHH
T ss_conf 98348899989987999-6-999999999988992997886999851999999999749849995340002031699987
Q ss_pred HHHCCCCEEEEEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 64128620343331420000000010068778899887876176156532232117899999999999818855531000
Q gi|254780900|r 147 YVEYDEINRVYGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHKIAILSAIAFGIDTSVEGVY 226 (438)
Q Consensus 147 ~l~~~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa~~~~g~~~~~~~v~ 226 (438)
+|+||+|++|+||||||||||||+|+ +|.+|+|+|+|||++||||||||+||+|+|+|||++||++++||.++ .++.
T Consensus 156 ~l~gd~I~~i~GIlNGT~NyILt~me-~g~~f~eal~eAq~lGyAE~DP~~Dv~G~Daa~Kl~ILa~~~~~~~~--~~~~ 232 (316)
T PRK08374 156 NLLGETIERIEAVVNASTTFILTRME-KGKTFEEALEEAQSLGILEEDPSKDIDGIDAGYKAKILHWVSYGEPP--ETEE 232 (316)
T ss_pred HHCCCCCCEEEEEEECCHHHHHHHHH-CCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC--CHHH
T ss_conf 51468863899999470899999997-59989999999997098999989787877499999999888639983--1133
Q ss_pred HHHHHHCCHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCC
Q ss_conf 12232047674034787198587410133136783569999864167730003665416898311310058972687666
Q gi|254780900|r 227 CEGISNITLEDIRGAADFGYCIKFLAMARRKGKGIIRYVYPVLLKYDSVMALVDGITNAVVIETNGLGKLTMTGPGAGGS 306 (438)
Q Consensus 227 ~~gI~~i~~~di~~a~~~g~~ikli~~~~~~~~~i~~~V~P~li~~~~~la~v~g~~Nai~i~~~~~g~~~~~G~GAG~~ 306 (438)
..||+++ +.|+++||+|.++. + .++|+|+++|++|||+ ++|++|++.++||.+|+++++|||||+.
T Consensus 233 ~~~i~~i---------~~g~~iklva~~~~--~--~~~V~p~~vp~~~pla-v~g~~N~i~i~td~~g~~~~~G~GAG~~ 298 (316)
T PRK08374 233 RAGIRGV---------KDARNVRLVAQVSK--G--RISVKPRKLPKNSPLL-VESVENAAVIKTDNLGELVLKGPGGGGK 298 (316)
T ss_pred HHHHHHH---------HCCCCCEEEEEEEC--C--EEEEEEEEECCCCCEE-ECCCCEEEEEECCCCCCEEEEECCCCCH
T ss_conf 6526657---------63986218999957--9--3899999976999225-8897449999771247679996898934
Q ss_pred CCHHHHHHHHHHHHHC
Q ss_conf 1020688999999741
Q gi|254780900|r 307 ATASAVLGDICSIAKT 322 (438)
Q Consensus 307 ~TAsaV~sDli~i~~~ 322 (438)
||||||++||+++|+.
T Consensus 299 ~TAsaV~sDli~iA~r 314 (316)
T PRK08374 299 VTASGVFTDIIKAALR 314 (316)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 6099999999999964
No 7
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=100.00 E-value=0 Score=541.37 Aligned_cols=313 Identities=21% Similarity=0.280 Sum_probs=264.8
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCC------------HHHHHC
Q ss_conf 72699998256678999999999899999973996599999826852002788771022078------------889844
Q gi|254780900|r 3 GVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDD------------PLIMAG 70 (438)
Q Consensus 3 k~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d------------~~~li~ 70 (438)
+.|+|+|+|+|+||+.+++++.+++++++++++.+++++++++++...-..-.++...|.++ +.+.+.
T Consensus 457 ~~i~v~l~G~G~VG~~ll~qi~~q~~~l~~~~~i~l~v~gianS~~~l~~~~Gi~l~~w~~~l~~~~~~~~~~~~~~~~~ 536 (810)
T PRK09466 457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGIDASRALAFFDDEAVEQDEESLFLWLR 536 (810)
T ss_pred CEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 55779998257288999999999999988750973799999747505756889898999998765267676999999998
Q ss_pred CCC--CCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHH---HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 889--9899986488885113578888632702885041778---87689999875313966996056453013189998
Q gi|254780900|r 71 EAD--IDVFVELIGGEDYPAYDAVRIALMRGCHVVTANKALI---ASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILK 145 (438)
Q Consensus 71 ~~~--IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKall---A~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~ 145 (438)
..+ -.|+|+++... ..+. +....|++|.|||||||... ..+|++|.++++++|+.|+||+|||||+|||+||+
T Consensus 537 ~~~~~~~v~vD~t~s~-~~~~-~y~~~l~~g~~vvt~Nk~a~s~~~~~y~~l~~~~~~~~~~~~yEttVgaGlPii~tl~ 614 (810)
T PRK09466 537 AHPYDELVVLDVTASE-QLAL-QYPDFASHGFHVISANKLAGSSPSPFYRQIKDAFAKTGRHWLYNATVGAGLPINHTVR 614 (810)
T ss_pred HCCCCCCEEEECCCCH-HHHH-HHHHHHHHCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHH
T ss_conf 5388887799757478-8999-9999998198798256304687799999999999970975886043246853699999
Q ss_pred HHH-HCCCCEEEEEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 764-1286203433314200000000100687788998878761761565322321178999999999998188555310
Q gi|254780900|r 146 NYV-EYDEINRVYGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHKIAILSAIAFGIDTSVEG 224 (438)
Q Consensus 146 ~~l-~~~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa~~~~g~~~~~~~ 224 (438)
+.+ +||+|++|+||||||+|||+++|. +|.+|+|+|++||++|||||||++||+|+|+|||++||||.+ |..++++|
T Consensus 615 ~L~~sGD~I~~i~GilsGTl~yif~~~~-~~~~fse~v~~A~~~GytEpDPr~DlsG~DvarKllILARe~-g~~~e~~d 692 (810)
T PRK09466 615 DLRNSGDSILAISGIFSGTLSWLFEQFD-GSVPFSELVDEAWQQGLTEPDPRDDLSGRDVMRKLLILAREA-GLEIEPDD 692 (810)
T ss_pred HHHHCCCEEEEEEEEEECHHHHHHHHCC-CCCCHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHHHHHHHH-CCCCCHHH
T ss_conf 9986678289999999435899987325-899989999999973888999702127975899999999985-87788765
Q ss_pred CHHHHH--------------HHCCHHH------HHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCC
Q ss_conf 001223--------------2047674------03478719858741013313678356999986416773000366541
Q gi|254780900|r 225 VYCEGI--------------SNITLED------IRGAADFGYCIKFLAMARRKGKGIIRYVYPVLLKYDSVMALVDGITN 284 (438)
Q Consensus 225 v~~~gI--------------~~i~~~d------i~~a~~~g~~ikli~~~~~~~~~i~~~V~P~li~~~~~la~v~g~~N 284 (438)
|.++++ ..+...| ++.|++.|+++|++|..+..+ .++|+|..+|++||||++.|.+|
T Consensus 693 i~~~~l~p~~~~~~~~~~f~~~l~~~d~~~~~~~~~A~~~g~~lr~v~~~~~~g---~~~V~l~~v~~~~p~a~l~g~dN 769 (810)
T PRK09466 693 IRVESLVPAHLEEGSLDQFFENGDELDEQMLQRLEAAREQGKVLRYVARFDANG---KARVGVEAVRPDHPLANLLPCDN 769 (810)
T ss_pred CCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC---CEEEEEEEECCCCCCCCCCCCCE
T ss_conf 414677836764389999998777524999999999997799799999974799---57999899479997510678753
Q ss_pred EEEEEEEEEE--EEEEEECCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 6898311310--0589726876661020688999999741
Q gi|254780900|r 285 AVVIETNGLG--KLTMTGPGAGGSATASAVLGDICSIAKT 322 (438)
Q Consensus 285 ai~i~~~~~g--~~~~~G~GAG~~~TAsaV~sDli~i~~~ 322 (438)
++.++|++++ |++++|||||+.|||+||++||++|++.
T Consensus 770 ~~~~~t~~y~~~plvi~G~GAG~~vTA~gv~~Dil~ia~~ 809 (810)
T PRK09466 770 VFAIESRWYRDNPLVIRGPGAGREVTAGAIQSDLNRLAQL 809 (810)
T ss_pred EEEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999945358882289748998403099999999999851
No 8
>PRK09436 thrA bifunctional aspartokinase I/homeserine dehydrogenase I; Provisional
Probab=100.00 E-value=0 Score=541.01 Aligned_cols=310 Identities=27% Similarity=0.382 Sum_probs=261.5
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC--CCCCCCCCCHHCCC---------HH---H
Q ss_conf 8726999982566789999999998999999739965999998268520--02788771022078---------88---9
Q gi|254780900|r 2 AGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI--DRGIDCLRYEWFDD---------PL---I 67 (438)
Q Consensus 2 sk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k--~~~~~~~~~~~~~d---------~~---~ 67 (438)
.+.|+|+|+|+|+||+.+++++.+++++++++ +++++++++++++... ..++++. .|.++ +. +
T Consensus 463 ~~~i~i~l~G~G~vG~~ll~qi~~q~~~l~~~-~i~l~v~gianS~~~l~~~~Gi~l~--~w~~~l~~~~~~~~~~~~~~ 539 (817)
T PRK09436 463 DQVIDVFVIGVGGVGGALLEQIKRQQQWLKKK-HIDLRVCGIANSRKMLLDEHGIDLD--NWREELAEAGEPFDLDRLIR 539 (817)
T ss_pred CCEEEEEEEECCHHHHHHHHHHHHHHHHHHHC-CCEEEEEEEECCCEEEECCCCCCHH--HHHHHHHHCCCCCCHHHHHH
T ss_conf 65477999844728799999999999988526-9449999997576057668998989--99999985678777999999
Q ss_pred HHCCCCC--CEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHH---HHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
Q ss_conf 8448899--8999864888851135788886327028850417788---7689999875313966996056453013189
Q gi|254780900|r 68 MAGEADI--DVFVELIGGEDYPAYDAVRIALMRGCHVVTANKALIA---SHGKDLALLAQKNNAILNFEAAVAGGIPIIR 142 (438)
Q Consensus 68 li~~~~I--DvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA---~~g~eL~~lA~~~gv~l~~easV~ggiPii~ 142 (438)
.+...+. -|+|++++.. ..+. +....|++|.|||||||...+ .+|++|.++|+++|+.|+||||||||+|||+
T Consensus 540 ~~~~~~~~n~v~vD~Tas~-~~~~-~Y~~~l~~g~~vvt~NK~a~s~~~~~y~~l~~~~~~~~~~~lyEatVgaGlPii~ 617 (817)
T PRK09436 540 LVKEYHLLNPVIVDCTSSA-AVAD-QYADFLAAGFHVVTPNKKANTSSMAYYHQLREAARKSRRKFLYETNVGAGLPVIE 617 (817)
T ss_pred HHHHCCCCCCEEEECCCCH-HHHH-HHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHH
T ss_conf 9996389884899888876-8899-9999998599699268646777899999999999864985875042046864799
Q ss_pred HHHHHH-HCCCCEEEEEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 998764-1286203433314200000000100687788998878761761565322321178999999999998188555
Q gi|254780900|r 143 ILKNYV-EYDEINRVYGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHKIAILSAIAFGIDTS 221 (438)
Q Consensus 143 ~l~~~l-~~~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa~~~~g~~~~ 221 (438)
||++.+ +||+|++|+||||||+||||++|. +|.+|+|+|++||++|||||||++||+|+|+|||++||||.+ |.+++
T Consensus 618 tl~~l~~sGd~i~~i~GilsGTl~yif~~~~-~~~~fse~v~~A~~~GytEpDPr~DlsG~DvarKl~ILAre~-G~~~e 695 (817)
T PRK09436 618 NLQNLLNAGDELLKFEGILSGSLSFIFGKLD-EGMSFSEATRLAREMGYTEPDPRDDLSGMDVARKLLILAREA-GYELE 695 (817)
T ss_pred HHHHHHHCCCEEEEEEEEEECHHHHHHHHCC-CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCC
T ss_conf 9999986698489999999435999875024-799989999999975999999842347843899999999985-88888
Q ss_pred CCCCHHHHH---------------HHCCHHH------HHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCC
Q ss_conf 310001223---------------2047674------0347871985874101331367835699998641677300036
Q gi|254780900|r 222 VEGVYCEGI---------------SNITLED------IRGAADFGYCIKFLAMARRKGKGIIRYVYPVLLKYDSVMALVD 280 (438)
Q Consensus 222 ~~~v~~~gI---------------~~i~~~d------i~~a~~~g~~ikli~~~~~~~~~i~~~V~P~li~~~~~la~v~ 280 (438)
++||.++++ .++...| ++.|++.|+++||+|..+ ++ .++|+|..+|.+||||+++
T Consensus 696 ~~di~~e~l~p~~~~~~~s~~~f~~~l~~~d~~~~~~~~~a~~~g~~lr~v~~~~--~~--~~~V~l~~v~~~~pla~l~ 771 (817)
T PRK09436 696 LEDIEVESVLPAEFDASGSVEEFMARLPELDAEFAARVAKARAEGKVLRYVGQIE--DG--KCKVGIAEVDANDPLYKVK 771 (817)
T ss_pred HHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE--CC--EEEEEEEEECCCCCCCCCC
T ss_conf 7653016668868725588999998767534999999999997799799999997--88--6899989968999751378
Q ss_pred CCCCEEEEEEEEEEE--EEEEECCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 654168983113100--589726876661020688999999741
Q gi|254780900|r 281 GITNAVVIETNGLGK--LTMTGPGAGGSATASAVLGDICSIAKT 322 (438)
Q Consensus 281 g~~Nai~i~~~~~g~--~~~~G~GAG~~~TAsaV~sDli~i~~~ 322 (438)
|.+|++.++|+++++ ++++|||||+.|||+||++||++++..
T Consensus 772 g~~N~~~~~t~~y~~~plvi~G~GAG~~vTA~gv~~Dilri~~~ 815 (817)
T PRK09436 772 GGENALAFYTRYYQPIPLVLRGYGAGNEVTAAGVFADLLRTLSW 815 (817)
T ss_pred CCCEEEEEEECCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 97449999833158873289727988521399999999998414
No 9
>pfam00742 Homoserine_dh Homoserine dehydrogenase.
Probab=100.00 E-value=0 Score=460.96 Aligned_cols=179 Identities=50% Similarity=0.790 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 31899987641286203433314200000000100687788998878761761565322321178999999999998188
Q gi|254780900|r 139 PIIRILKNYVEYDEINRVYGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHKIAILSAIAFGI 218 (438)
Q Consensus 139 Pii~~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa~~~~g~ 218 (438)
|||++|+++|+||+|++|+||||||||||||+|+++|.+|++||+|||++||||||||+||+|+|+|||++|||+++||.
T Consensus 1 PiI~~l~~~l~g~~I~~i~GIlNGTtNyILt~m~~~g~~f~eaL~eAq~lGyAEaDPt~Dv~G~Daa~Kl~ILa~~~fg~ 80 (179)
T pfam00742 1 PIIRTLRELLAGDRITRIEGILNGTTNYILTRMEEEGLSFEEALKEAQELGYAEADPTDDVEGLDAARKLLILARLAFGL 80 (179)
T ss_pred CCHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCC
T ss_conf 90358764113184589999997808998776754599999999999983987889501015742788999999998499
Q ss_pred CCCCCCCHHHHHHHCCHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEE
Q ss_conf 55531000122320476740347871985874101331367835699998641677300036654168983113100589
Q gi|254780900|r 219 DTSVEGVYCEGISNITLEDIRGAADFGYCIKFLAMARRKGKGIIRYVYPVLLKYDSVMALVDGITNAVVIETNGLGKLTM 298 (438)
Q Consensus 219 ~~~~~~v~~~gI~~i~~~di~~a~~~g~~ikli~~~~~~~~~i~~~V~P~li~~~~~la~v~g~~Nai~i~~~~~g~~~~ 298 (438)
++++++|+++||++++++|+++|+++||++||+|.+++.++++.++|+|+++|++||||+|+|++|+|.++|+.+|++++
T Consensus 81 ~~~~~~v~~~GI~~i~~~di~~A~~~G~~iklva~~~~~~~~~~~~V~p~~v~~~~pla~v~g~~Nav~i~t~~~g~~~~ 160 (179)
T pfam00742 81 PVELDDVEVEGISPITLEDIEYAKELGYVIKLVAEARRDDGGVEARVGPTLVPKDHPLANVDGVDNAVLIETDRYGPLVI 160 (179)
T ss_pred CCCHHHCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEEECCCCEEEEEEEEEECCCCCEEEECCCCEEEEEECCCCCCEEE
T ss_conf 87889930447476899999999988798999999998199789999999984998403456983799998750586899
Q ss_pred EECCCCCCCCHHHHHHHHH
Q ss_conf 7268766610206889999
Q gi|254780900|r 299 TGPGAGGSATASAVLGDIC 317 (438)
Q Consensus 299 ~G~GAG~~~TAsaV~sDli 317 (438)
+|||||+.||||||++||+
T Consensus 161 ~G~GAG~~~TAsaV~~Dil 179 (179)
T pfam00742 161 YGPGAGGEPTASAVLSDLL 179 (179)
T ss_pred EECCCCCHHHHHHHHHHHC
T ss_conf 9789890361999998609
No 10
>KOG0455 consensus
Probab=100.00 E-value=0 Score=375.63 Aligned_cols=310 Identities=25% Similarity=0.386 Sum_probs=247.3
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC-CCCCCCCCCHHCCCH----------------
Q ss_conf 726999982566789999999998999999739965999998268520-027887710220788----------------
Q gi|254780900|r 3 GVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI-DRGIDCLRYEWFDDP---------------- 65 (438)
Q Consensus 3 k~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k-~~~~~~~~~~~~~d~---------------- 65 (438)
|.++|+++|||.||+.++.++...+. +..+.+..++++++|+..... .+++. ...+-++|
T Consensus 2 k~vnVa~~G~G~vG~~lL~qi~~~~s-~~~~~tv~~nvv~v~~~e~~~~skD~~--p~nl~sewk~~L~~st~~alsLda 78 (364)
T KOG0455 2 KKVNVALMGCGGVGRHLLQQIVSCRS-LHAKMTVHINVVGVCDSESLVASKDVL--PENLNSEWKSELIKSTGSALSLDA 78 (364)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHH-HHCCCCEEEEEEEEECCCCCCCCCCCC--HHHHCHHHHHHHHHHCCCCCCHHH
T ss_conf 62208999456067999999987764-311671699999994131350434457--001045999999873378555899
Q ss_pred --HHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHH---HHHHHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf --8984488998999864888851135788886327028850417788---76899998753139669960564530131
Q gi|254780900|r 66 --LIMAGEADIDVFVELIGGEDYPAYDAVRIALMRGCHVVTANKALIA---SHGKDLALLAQKNNAILNFEAAVAGGIPI 140 (438)
Q Consensus 66 --~~li~~~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA---~~g~eL~~lA~~~gv~l~~easV~ggiPi 140 (438)
..++..|---++|+.+...+ .| +...+++..|+.++|+||.+.. +||+.|+... +.+..++.|||||+|+||
T Consensus 79 Lia~L~~sp~p~ilVDntaS~~-ia-~~y~Kfv~~gi~IatpNKKafss~l~~y~~l~~~~-~s~~fi~HEatVGAGLPi 155 (364)
T KOG0455 79 LIAKLLGSPTPLILVDNTASME-IA-EIYMKFVDLGICIATPNKKAFSSTLEHYDKLALHS-KSPRFIRHEATVGAGLPI 155 (364)
T ss_pred HHHHHCCCCCCEEEEECCCHHH-HH-HHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHCC-CCCCEEEEECCCCCCCHH
T ss_conf 9999708998549981651799-99-99999986481483488655545289999998558-998627752214678616
Q ss_pred HHHHHHHH-HCCCCEEEEEEECCCHHHHEEHHHCC---CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89998764-12862034333142000000001006---877889988787617615653223211789999999999981
Q gi|254780900|r 141 IRILKNYV-EYDEINRVYGIINGTCNYILSHMNNL---GLSFQDCLEEARRQGYAEGDATFDINGVDSSHKIAILSAIAF 216 (438)
Q Consensus 141 i~~l~~~l-~~~~i~~i~GIlnGT~nyIL~~m~~~---g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa~~~~ 216 (438)
|.+|++-+ .||+|.+|+|||+||..||+++.++. -.+|+++++-|+++||+||||++|++|+|+|||.+||+|++
T Consensus 156 Is~L~eiI~tGDev~kIeGifSGTLsYifne~s~gk~~~~sfsdvVk~AKklGYTEPDPRDDLnGmDVARKvtIl~Ri~- 234 (364)
T KOG0455 156 ISSLNEIISTGDEVHKIEGIFSGTLSYIFNELSDGKPGTLSFSDVVKAAKKLGYTEPDPRDDLNGMDVARKVTILARIL- 234 (364)
T ss_pred HHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHC-
T ss_conf 9999999855984168887860307888777605998756599999999972899999642346511344432311320-
Q ss_pred CCCCC-CCCCHHHH------------------HHHCCH---HHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEEECCC
Q ss_conf 88555-31000122------------------320476---740347871985874101331367835699998641677
Q gi|254780900|r 217 GIDTS-VEGVYCEG------------------ISNITL---EDIRGAADFGYCIKFLAMARRKGKGIIRYVYPVLLKYDS 274 (438)
Q Consensus 217 g~~~~-~~~v~~~g------------------I~~i~~---~di~~a~~~g~~ikli~~~~~~~~~i~~~V~P~li~~~~ 274 (438)
|..+. ++.++++. +.+.+. +..+.|...|+++|++|.++..+.. ..|.-.-.+++|
T Consensus 235 Gv~ves~~Sfpv~SLiPepl~s~~sadeFL~gl~~~D~~~~~~~keA~~egkVlRfvg~~dva~ks--v~Vgiekyd~sh 312 (364)
T KOG0455 235 GVRVESMDSFPVESLIPEPLPSLMSADEFLHGLVKLDQNIEERVKEASSEGKVLRFVGVIDVANKS--VQVGIEKYDKSH 312 (364)
T ss_pred CCEEECCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCE--EEEEEEECCCCC
T ss_conf 515633666521213876540004699998531012055999999763168679999998604532--786047604668
Q ss_pred CCCCCCCCCCEEEEEEEEE--EEEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 3000366541689831131--0058972687666102068899999974
Q gi|254780900|r 275 VMALVDGITNAVVIETNGL--GKLTMTGPGAGGSATASAVLGDICSIAK 321 (438)
Q Consensus 275 ~la~v~g~~Nai~i~~~~~--g~~~~~G~GAG~~~TAsaV~sDli~i~~ 321 (438)
||+++.|.+|.|.++|.+| .|++++|.|||...||++|++|+++|+.
T Consensus 313 Pfa~L~gSDNiisi~tkrY~t~PlViqGAGAGaavTAAGVLgDiIki~~ 361 (364)
T KOG0455 313 PFARLRGSDNIISIYTKRYKTQPLVIQGAGAGAAVTAAGVLGDIIKIQD 361 (364)
T ss_pred CHHHHCCCCCEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 6012047885589871010368638972677502335577888999998
No 11
>pfam03447 NAD_binding_3 Homoserine dehydrogenase, NAD binding domain. This domain adopts a Rossmann NAD binding fold. The C-terminal domain of homoserine dehydrogenase contributes a single helix to this structural domain, which is not included in the Pfam model.
Probab=99.90 E-value=1.7e-23 Score=184.93 Aligned_cols=113 Identities=26% Similarity=0.257 Sum_probs=100.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC-CCCCCCCCCHHCCCHHHHHCCCCCCEEEECCCCCCCCHH
Q ss_conf 2566789999999998999999739965999998268520-027887710220788898448899899986488885113
Q gi|254780900|r 11 GLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI-DRGIDCLRYEWFDDPLIMAGEADIDVFVELIGGEDYPAY 89 (438)
Q Consensus 11 G~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k-~~~~~~~~~~~~~d~~~li~~~~IDvVVEliGg~~~pA~ 89 (438)
|||+||++++++|.+++.. .++++++|++|+..+ .+....+...+++|+.++++++++|+|||+ ||.+ +++
T Consensus 1 G~G~VG~~v~~~l~~~~~~------~~~~l~~v~~r~~~~~~~~~~~~~~~~~~d~~~ll~~~~iDvVVE~-~g~~-~~~ 72 (116)
T pfam03447 1 GCGAIGSGLLELLLRQQEE------IPLELVAVADRDLLSKARAALLGDEPVTLDLDDLVADPRPDVVVEC-ASSE-AVA 72 (116)
T ss_pred CCCCHHHHHHHHHHHCCCC------CCEEEEEEEECCHHHCCCCCCCCCCEEECCHHHHHCCCCCCEEEEC-CCCH-HHH
T ss_conf 9870289999999949203------5679999984783432321246667157799999618899899988-9948-999
Q ss_pred HHHHHHHHCCEEEEEECHHHHH--HHHHHHHHHHHHCCCEEEEE
Q ss_conf 5788886327028850417788--76899998753139669960
Q gi|254780900|r 90 DAVRIALMRGCHVVTANKALIA--SHGKDLALLAQKNNAILNFE 131 (438)
Q Consensus 90 ~~i~~AL~~GkhVVTANKallA--~~g~eL~~lA~~~gv~l~~e 131 (438)
+++++||++|||||||||+++| .||+||+++|+++|+.|+||
T Consensus 73 ~~~~~aL~~GkhVVTaNK~~lA~~~~~~eL~~~A~~~g~~~~fE 116 (116)
T pfam03447 73 EYVLKALKAGKHVVTASKGALADLALRERLREAAEASGVRVYFE 116 (116)
T ss_pred HHHHHHHHCCCEEEEECHHHHCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 99999998799899907889678579999999999839969729
No 12
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.82 E-value=5.2e-20 Score=160.50 Aligned_cols=79 Identities=24% Similarity=0.410 Sum_probs=75.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCCEEEECC
Q ss_conf 27999924888748999999886699578888226778776135999921048899999999862383000473576626
Q gi|254780900|r 354 YFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRYSCVICIE 433 (438)
Q Consensus 354 yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~~~~IRIE 433 (438)
|||||.|.|+||||++||++|++|+|||++++|++..+ ++.+|+|++||+++|+++++++++|++++++.++|++||||
T Consensus 1 yYlRl~v~D~pGVla~It~i~a~~~ISI~sv~Q~~~~~-~~~a~iviiTh~~~e~~i~~al~~i~~l~~v~~~~~~iRIE 79 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADG-GETAPVVIVTHETSEAALNAALAEIEALDAVQGVPSVIRVE 79 (79)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCHHHEEECCCCC-CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEEC
T ss_conf 98999807878579999999997498876515157678-99655899953250999999999997498636787189609
No 13
>PRK11579 putative oxidoreductase; Provisional
Probab=99.56 E-value=7.1e-14 Score=117.45 Aligned_cols=144 Identities=20% Similarity=0.242 Sum_probs=107.0
Q ss_pred CCCCEEEEEECCCHHHHH-HHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEEE
Q ss_conf 987269999825667899-9999999899999973996599999826852002788771022078889844889989998
Q gi|254780900|r 1 MAGVLKVGVAGLGTVGSA-LIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFVE 79 (438)
Q Consensus 1 Msk~ikIgiiG~G~VG~~-~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVVE 79 (438)
|+++|||||+|||.+|+. .+..+. . -.++++++||+++.++.+. ......+++|+.+++.++++|+|+=
T Consensus 1 M~~~irvgiiG~G~~~~~~h~~~~~-------~--~~~~~l~av~d~~~~~~~a-~~~~~~~~~~~~~ll~~~~id~V~i 70 (346)
T PRK11579 1 MSDKIRVGLIGYGYASKTFHAPLIA-------G--TPGLELAAVSSSDETKVKA-DWPTVTVVSEPKHLFNDPNIDLIVI 70 (346)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-------C--CCCEEEEEEECCCHHHHHC-CCCCCCEECCHHHHHCCCCCCEEEE
T ss_conf 9988759999362999999999996-------2--9991999997989999950-2589953899999945999999999
Q ss_pred CCCCCCCCHHHHHHHHHHCCEEEEEECHH--HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 64888851135788886327028850417--7887689999875313966996056453013189998764128620343
Q gi|254780900|r 80 LIGGEDYPAYDAVRIALMRGCHVVTANKA--LIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILKNYVEYDEINRVY 157 (438)
Q Consensus 80 liGg~~~pA~~~i~~AL~~GkhVVTANKa--llA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~~~l~~~~i~~i~ 157 (438)
++ ....+.+++++||++||||. +.|. +-....++|.++|+++|+.+. -.-.-==-|.+..+|+.+...++-+|.
T Consensus 71 ~t--p~~~H~~~~~~al~aGkhv~-~EKP~a~~~~~a~~l~~~a~~~g~~l~-v~~~~R~~~~~~~~~~~i~~G~lG~i~ 146 (346)
T PRK11579 71 PT--PNDTHFPLAKAALEAGKHVV-VDKPFTVTLSQARELDALAKSLGRVLS-VFHNRRWDSDFLTLKGLLAEGVLGEVA 146 (346)
T ss_pred CC--CCHHHHHHHHHHHHCCCCEE-ECCCCCCCHHHHHHHHHHHHHCCCEEE-EEEEECCCHHHHHHHHHHHCCCCCCEE
T ss_conf 79--96789999999998799489-538767879999999999987296799-965531898999987787579978538
Q ss_pred E
Q ss_conf 3
Q gi|254780900|r 158 G 158 (438)
Q Consensus 158 G 158 (438)
-
T Consensus 147 ~ 147 (346)
T PRK11579 147 Y 147 (346)
T ss_pred E
T ss_conf 9
No 14
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=99.42 E-value=2e-12 Score=107.25 Aligned_cols=142 Identities=20% Similarity=0.259 Sum_probs=104.5
Q ss_pred CCCEEEEEECCCHHHHH-HHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC----CCCCCCHHCCCHHHHHCCCCCCE
Q ss_conf 87269999825667899-99999998999999739965999998268520027----88771022078889844889989
Q gi|254780900|r 2 AGVLKVGVAGLGTVGSA-LIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRG----IDCLRYEWFDDPLIMAGEADIDV 76 (438)
Q Consensus 2 sk~ikIgiiG~G~VG~~-~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~----~~~~~~~~~~d~~~li~~~~IDv 76 (438)
.++|||||+|+|.++.. .+..+.. ..+. ++++++++++.++.+. +..+ ..++|+++++++++||+
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~-------~~~~-~~~vav~d~~~~~a~~~a~~~~~~--~~~~~~~~ll~~~~iD~ 70 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAA-------LGGG-LELVAVVDRDPERAEAFAEEFGIA--KAYTDLEELLADPDIDA 70 (342)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHH-------CCCC-EEEEEEECCCHHHHHHHHHHCCCC--CCCCCHHHHHCCCCCCE
T ss_conf 9932799989876788888999973-------8874-699999649989999999981997--45299999945999988
Q ss_pred EEECCCCCCCCHHHHHHHHHHCCEEEEEECHH--HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 99864888851135788886327028850417--7887689999875313966996056453013189998764128620
Q gi|254780900|r 77 FVELIGGEDYPAYDAVRIALMRGCHVVTANKA--LIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILKNYVEYDEIN 154 (438)
Q Consensus 77 VVEliGg~~~pA~~~i~~AL~~GkhVVTANKa--llA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~~~l~~~~i~ 154 (438)
|+=++ +...+++++++||++||||. +.|. +-....++|.++|+++|+.+. .+-.---.|.+..+++.+...+|-
T Consensus 71 V~Iat--p~~~H~~~a~~AL~aGkhVl-~EKPla~t~~ea~~l~~~a~~~g~~l~-v~~~~Rf~p~~~~~k~li~~g~iG 146 (342)
T COG0673 71 VYIAT--PNALHAELALAALEAGKHVL-CEKPLALTLEEAEELVELARKAGVKLM-VGFNRRFDPAVQALKELIDSGALG 146 (342)
T ss_pred EEEEC--CCHHHHHHHHHHHHCCCEEE-EECCCCCCHHHHHHHHHHHHHCCCEEE-EEEHHHCCHHHHHHHHHHHCCCCC
T ss_conf 99969--80677999999997799699-928998999999999999997599499-988465498999999998659874
Q ss_pred EEE
Q ss_conf 343
Q gi|254780900|r 155 RVY 157 (438)
Q Consensus 155 ~i~ 157 (438)
++.
T Consensus 147 ~i~ 149 (342)
T COG0673 147 EVV 149 (342)
T ss_pred CEE
T ss_conf 159
No 15
>KOG2741 consensus
Probab=99.39 E-value=6.9e-12 Score=103.50 Aligned_cols=148 Identities=16% Similarity=0.249 Sum_probs=114.8
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC----CCCCCCHHCCCHHHHHCCCCCCE
Q ss_conf 98726999982566789999999998999999739965999998268520027----88771022078889844889989
Q gi|254780900|r 1 MAGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRG----IDCLRYEWFDDPLIMAGEADIDV 76 (438)
Q Consensus 1 Msk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~----~~~~~~~~~~d~~~li~~~~IDv 76 (438)
++++||+||+|+|.+++-+++-|..-.+ ...+|++|++++.++... .+.++.+.+..++++++|+++|+
T Consensus 3 ~s~~ir~Gi~g~g~ia~~f~~al~~~p~-------s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDv 75 (351)
T KOG2741 3 DSATIRWGIVGAGRIARDFVRALHTLPE-------SNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDV 75 (351)
T ss_pred CCCEEEEEEEEHHHHHHHHHHHHCCCCC-------CCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCE
T ss_conf 8860589886046778999997214754-------582799996552788999998659998742557998824987687
Q ss_pred EEECCCCCCCCHHHHHHHHHHCCEEEEEECHHH--HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 998648888511357888863270288504177--887689999875313966996056453013189998764128620
Q gi|254780900|r 77 FVELIGGEDYPAYDAVRIALMRGCHVVTANKAL--IASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILKNYVEYDEIN 154 (438)
Q Consensus 77 VVEliGg~~~pA~~~i~~AL~~GkhVVTANKal--lA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~~~l~~~~i~ 154 (438)
|+ ++.....+++++.-||++|||| .+.|.+ -+..-+++.++|+++|++|. |+.-.==-|...-+|+.+.+..+-
T Consensus 76 Vy--i~~~~~qH~evv~l~l~~~K~V-L~EKPla~n~~e~~~iveaA~~rgv~~m-eg~~~R~~P~~~~lke~l~~~~~G 151 (351)
T KOG2741 76 VY--ISTPNPQHYEVVMLALNKGKHV-LCEKPLAMNVAEAEEIVEAAEARGVFFM-EGLWWRFFPRYAKLKELLSSGVLG 151 (351)
T ss_pred EE--ECCCCCCHHHHHHHHHHCCCCE-EECCCCCCCHHHHHHHHHHHHHCCCEEE-EEEEEECCCHHHHHHHHHHCCCCC
T ss_conf 99--6799800899999999759957-8656553889999999999997694887-644421073899999997126555
Q ss_pred EEEEE
Q ss_conf 34333
Q gi|254780900|r 155 RVYGI 159 (438)
Q Consensus 155 ~i~GI 159 (438)
.|.-+
T Consensus 152 dvk~v 156 (351)
T KOG2741 152 DVKSV 156 (351)
T ss_pred CCEEE
T ss_conf 62489
No 16
>PRK10206 putative dehydrogenase; Provisional
Probab=99.39 E-value=1.3e-11 Score=101.63 Aligned_cols=144 Identities=15% Similarity=0.142 Sum_probs=98.8
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC-CCCCCCHHCCCHHHHHCCCCCCEEEECCC
Q ss_conf 26999982566789999999998999999739965999998268520027-88771022078889844889989998648
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRG-IDCLRYEWFDDPLIMAGEADIDVFVELIG 82 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~-~~~~~~~~~~d~~~li~~~~IDvVVEliG 82 (438)
+||+||+|||..|+.+ |...+... ...+++..++.|+....+. -..+...+++|+++++.+++||+|+=++
T Consensus 2 ~irvaiiG~G~~~~~f------H~P~i~~~-~~~~~v~~v~~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~id~V~i~t- 73 (345)
T PRK10206 2 VINCAFIGFGKSTTRY------HLPYVLNR-KDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCT- 73 (345)
T ss_pred EEEEEEECCCHHHHHH------HHHHHHCC-CCCEEEEEEECCCHHHHHHHHHCCCCCEECCHHHHHCCCCCCEEEECC-
T ss_conf 2479999264999999------89999638-995799999788761888887769981228999995499999999879-
Q ss_pred CCCCCHHHHHHHHHHCCEEEEEECH--HHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8885113578888632702885041--778876899998753139669960564530131899987641286203433
Q gi|254780900|r 83 GEDYPAYDAVRIALMRGCHVVTANK--ALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILKNYVEYDEINRVYG 158 (438)
Q Consensus 83 g~~~pA~~~i~~AL~~GkhVVTANK--allA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~~~l~~~~i~~i~G 158 (438)
....+++++++||++||||+. .| ++-+.+..||.++|+++|+.+. ..----=-|-+.++++.+...++-+|.-
T Consensus 74 -P~~~H~~~a~~al~aGkhV~~-EKP~~~~~~ea~~l~~~a~~~g~~l~-v~~nrR~~~~~~~~k~~i~~G~lG~v~~ 148 (345)
T PRK10206 74 -HADSHFEYAKRALEAGKNVLV-EKPFTPTLAQAKELFALAKSKGLTVT-PYQNRRFDSCFLTAKKAIESGKLGEIVE 148 (345)
T ss_pred -CCHHHHHHHHHHHHCCCCEEE-ECCCCCCHHHHHHHHHHHHHCCCEEE-EEEECCCCHHHHHHHHHHHCCCCCCEEE
T ss_conf -957899999999978992898-03664989999999999997099799-9872017949999999866587777099
No 17
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=99.18 E-value=6.5e-11 Score=96.65 Aligned_cols=230 Identities=18% Similarity=0.196 Sum_probs=146.2
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC------------------------CCCCC
Q ss_conf 872699998256678999999999899999973996599999826852002------------------------78877
Q gi|254780900|r 2 AGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDR------------------------GIDCL 57 (438)
Q Consensus 2 sk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~------------------------~~~~~ 57 (438)
.|+||||++|.|.+|++++.++.. . ..++++++++|+....+ .+...
T Consensus 15 G~PiRVGlIGAG~mG~~ivtQi~~-------m--~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aG 85 (438)
T COG4091 15 GKPIRVGLIGAGEMGTGIVTQIAS-------M--PGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAG 85 (438)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-------C--CCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 995599875454110679998750-------6--8836999842464278899987358720000111166788998628
Q ss_pred CCHHCCCHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 10220788898448899899986488885113578888632702885041778876899998753139669960564530
Q gi|254780900|r 58 RYEWFDDPLIMAGEADIDVFVELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGG 137 (438)
Q Consensus 58 ~~~~~~d~~~li~~~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~gg 137 (438)
+..+|+|...++..+.||+|||++|-.+. .-++...|+.+|||+|..|-+.-..-|+-|.+.|.+.|+. |..+-|-
T Consensus 86 Ki~vT~D~~~i~~~~~IdvIIdATG~p~v-GA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~Gvi--yS~~~GD- 161 (438)
T COG4091 86 KIAVTDDAELIIANDLIDVIIDATGVPEV-GAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVI--YSGGAGD- 161 (438)
T ss_pred CEEEECCHHHHHCCCCCEEEEECCCCCCH-HHHHHHHHHHCCCEEEEEEEEECEEECHHHHHHHHHCCEE--EECCCCC-
T ss_conf 67982653543238860499976788530-1475799985677289997540325348899877654758--8546789-
Q ss_pred HHH-HHHHHHHH--HCCCCEEEEEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 131-89998764--128620343331420000000010068778899887876176156532232117899999999999
Q gi|254780900|r 138 IPI-IRILKNYV--EYDEINRVYGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHKIAILSAI 214 (438)
Q Consensus 138 iPi-i~~l~~~l--~~~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa~~ 214 (438)
=|- +--|-+-. .|-++.+---=.|--.|| +.+-.+ .=.||.+.++.-.=-..=.+|.-+..-.+++||
T Consensus 162 eP~~~mEL~efa~a~G~evv~aGKGkNnpl~~-----~a~Pdt---~~eeA~r~~~n~~Ml~sF~DGsKtmvEMaavAN- 232 (438)
T COG4091 162 EPSSCMELYEFASALGFEVVSAGKGKNNPLNI-----DANPDT---YEEEAKRRNMNPRMLVSFQDGSKTMVEMAAVAN- 232 (438)
T ss_pred CCHHHHHHHHHHHHCCCEEEECCCCCCCCCCC-----CCCCCH---HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHC-
T ss_conf 71778789999986497588615776898766-----789814---788876048986786543143089999999854-
Q ss_pred HHCCCCCCCCCHHHH----HHHCCHHHHHHHHHCCCEEEEEEEEEEC
Q ss_conf 818855531000122----3204767403478719858741013313
Q gi|254780900|r 215 AFGIDTSVEGVYCEG----ISNITLEDIRGAADFGYCIKFLAMARRK 257 (438)
Q Consensus 215 ~~g~~~~~~~v~~~g----I~~i~~~di~~a~~~g~~ikli~~~~~~ 257 (438)
+-| +.+++.-.-| +.+++. ++. -++.|..+---++.+..
T Consensus 233 aTG--l~pd~~GM~gp~a~vdel~~-v~~-p~e~gg~l~~~GvVdy~ 275 (438)
T COG4091 233 ATG--LVPDKPGMHGPPADVDELSK-VLD-PKEDGGQLSRSGVVDYV 275 (438)
T ss_pred CCC--CCCCCCCCCCCCCCHHHHHH-HCC-HHHHCCEECCCCEEEEE
T ss_conf 657--78998766589778788877-427-28647830246618984
No 18
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=99.18 E-value=2.5e-10 Score=92.57 Aligned_cols=132 Identities=20% Similarity=0.252 Sum_probs=95.1
Q ss_pred CC--CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC--CCCCCHHCCCHHHHHCCCCCCE
Q ss_conf 98--7269999825667899999999989999997399659999982685200278--8771022078889844889989
Q gi|254780900|r 1 MA--GVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGI--DCLRYEWFDDPLIMAGEADIDV 76 (438)
Q Consensus 1 Ms--k~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~--~~~~~~~~~d~~~li~~~~IDv 76 (438)
|| ++|||||+|||.+|+.+++.|.+. ..++++.++.+|+..+.+.. .+.......+..++.. ..|+
T Consensus 1 ~~~~~kmrVgliG~GaIG~~va~~l~~g--------~~~~~l~~V~~r~~~~~~~~~~~~~~~~~~~~~~~l~~--~~Dl 70 (271)
T PRK13302 1 MSSRPELRVAIAGLGAIGKAIAQALDRG--------LPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLAT--HADI 70 (271)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHCC--------CCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHH--CCCE
T ss_conf 9976667799988678999999999758--------99818999992887888999873589874078899601--8999
Q ss_pred EEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 998648888511357888863270288504177887689999875313966996056453013189998
Q gi|254780900|r 77 FVELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILK 145 (438)
Q Consensus 77 VVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~ 145 (438)
|||+-| .+ ..++|..++|++|+++++..=+-++.. ++|.++|+++|.+++.-+---||+=.++..+
T Consensus 71 VVE~A~-~~-av~~~~~~~L~~G~dlvv~SvGALad~-~~l~~~A~~~g~~i~ipsGAigGlD~l~aa~ 136 (271)
T PRK13302 71 VVEAAP-AS-VLRAIVEPVLAAGKKAIVLSVGALLRN-EDLIDLARQNGGQIIVPTGALLGLDAVTAAA 136 (271)
T ss_pred EEECCC-HH-HHHHHHHHHHHCCCCEEEECHHHHCCC-HHHHHHHHHCCCEEEEECCHHHHHHHHHHHH
T ss_conf 998989-89-999999999975997899755795692-9999999966985998070343478999986
No 19
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=99.12 E-value=1.1e-09 Score=88.04 Aligned_cols=130 Identities=19% Similarity=0.224 Sum_probs=94.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC-CCCCHHCCCHHHHHCCCCCCEEEECCC
Q ss_conf 2699998256678999999999899999973996599999826852002788-771022078889844889989998648
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGID-CLRYEWFDDPLIMAGEADIDVFVELIG 82 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~-~~~~~~~~d~~~li~~~~IDvVVEliG 82 (438)
|+||||+|||.+|+.+++.|.+. ..++++.+|++|+.++.+.+. ........+.++++. +.|+|||+-|
T Consensus 1 M~rVgiIG~GaIG~~Va~~l~~g--------~~~~~L~~V~~r~~~~a~~~a~~~~~~~~~~ld~l~~--~~DlVVE~A~ 70 (265)
T PRK13304 1 MLKIGIVGCGAIANLITKAIDSG--------RINAELLAFYDRNLEKAENLAEKTGAPACLSIDELVK--DVDLVVECAS 70 (265)
T ss_pred CCEEEEECCCHHHHHHHHHHHCC--------CCCEEEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHH--CCCEEEECCC
T ss_conf 94999986578999999998679--------9864999997898789887764159971279899833--8999998989
Q ss_pred CCCCCHHHHHHHHHHCCEEEEEECHHHHHH--HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 888511357888863270288504177887--689999875313966996056453013189998
Q gi|254780900|r 83 GEDYPAYDAVRIALMRGCHVVTANKALIAS--HGKDLALLAQKNNAILNFEAAVAGGIPIIRILK 145 (438)
Q Consensus 83 g~~~pA~~~i~~AL~~GkhVVTANKallA~--~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~ 145 (438)
.+ .-++|..++|++|+++++..-+-+|. -.++|.++|+++|.+++.-+---||+=.++..+
T Consensus 71 -~~-av~~~~~~~L~~G~dlvv~SvGALaD~~l~~~L~~~A~~~g~~i~ipsGAigGlD~l~aa~ 133 (265)
T PRK13304 71 -QK-AVEDTVPKSLNNGKDVIIMSVGALADKELFLKLYKLAKENGCKIYLPSGAIAGIDGIKAAS 133 (265)
T ss_pred -HH-HHHHHHHHHHHCCCCEEEECHHHHCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHH
T ss_conf -89-9999999999759989998136855989999999999737977998261344278899986
No 20
>pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold. This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.
Probab=99.10 E-value=4.5e-10 Score=90.77 Aligned_cols=114 Identities=22% Similarity=0.338 Sum_probs=86.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC-CCCCHHCCCHHHHHCCCCCCEEEECCCC
Q ss_conf 699998256678999999999899999973996599999826852002788-7710220788898448899899986488
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGID-CLRYEWFDDPLIMAGEADIDVFVELIGG 83 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~-~~~~~~~~d~~~li~~~~IDvVVEliGg 83 (438)
||||++|+|.+|+..++.+.+ ....++++++++++.++...+. ..+...++++.++++++++|+|+=++
T Consensus 1 iki~iiG~G~~g~~~~~~~~~--------~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~iD~v~I~t-- 70 (120)
T pfam01408 1 LRVGIVGAGKIGRRHLRALNE--------SQDGAELVGVLDPDPARAEAVAESFGVPAYSDLEELLADPDVDAVSVAT-- 70 (120)
T ss_pred CEEEEEECHHHHHHHHHHHHH--------CCCCCEEEEEECCCHHHHHHHHHHHCCCEECCHHHHHHCCCCCEEEECC--
T ss_conf 989999077999999999985--------5999789999829999999999983996788699997377889899908--
Q ss_pred CCCCHHHHHHHHHHCCEEEEEECHHH--HHHHHHHHHHHHHHCCCEEE
Q ss_conf 88511357888863270288504177--88768999987531396699
Q gi|254780900|r 84 EDYPAYDAVRIALMRGCHVVTANKAL--IASHGKDLALLAQKNNAILN 129 (438)
Q Consensus 84 ~~~pA~~~i~~AL~~GkhVVTANKal--lA~~g~eL~~lA~~~gv~l~ 129 (438)
....+++++..+|++||||. ..|.+ -.....+|.++|+++|+.+.
T Consensus 71 p~~~H~~~~~~~l~~g~~v~-~EKP~~~~~~e~~~l~~~a~~~~~~~~ 117 (120)
T pfam01408 71 PPGLHFELALAALEAGKHVL-VEKPLATTVEEAKELVELAEKKGVRLS 117 (120)
T ss_pred CHHHHHHHHHHHHHHCCEEE-EECCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 74618999999998199899-968981999999999999998299699
No 21
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=99.05 E-value=3.2e-09 Score=84.73 Aligned_cols=129 Identities=19% Similarity=0.236 Sum_probs=89.5
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC--CCCCCCCCCHHCCCHHHHHCCCCCCEEEECC
Q ss_conf 26999982566789999999998999999739965999998268520--0278877102207888984488998999864
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI--DRGIDCLRYEWFDDPLIMAGEADIDVFVELI 81 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k--~~~~~~~~~~~~~d~~~li~~~~IDvVVEli 81 (438)
||||||+|||.+|+.+++.|.+ +...++..+..++... .+...........+.+++..+ .|+|||+-
T Consensus 1 MmrVgiiG~GaIG~~va~~l~~---------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~--~DlVVE~A 69 (265)
T PRK13303 1 MMKVAMIGFGAIAAAVYELLEH---------DPRLRVDWVIVPEHSVDAVRRALGRAVQVVSSVDALAQR--PDLVVECA 69 (265)
T ss_pred CCEEEEECCCHHHHHHHHHHHC---------CCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHC--CCEEEECC
T ss_conf 9299998546899999999844---------997279999946852677875304588644798898237--99999898
Q ss_pred CCCCCCHHHHHHHHHHCCEEEEEECHHHHHH--HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 8888511357888863270288504177887--689999875313966996056453013189998
Q gi|254780900|r 82 GGEDYPAYDAVRIALMRGCHVVTANKALIAS--HGKDLALLAQKNNAILNFEAAVAGGIPIIRILK 145 (438)
Q Consensus 82 Gg~~~pA~~~i~~AL~~GkhVVTANKallA~--~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~ 145 (438)
+ .+ ..++|..++|++|++++...-+-+|. -.++|.++|+++|.+++.-+---||+-+++..+
T Consensus 70 ~-~~-av~~~~~~~L~~g~dl~v~SvgALaD~~~~~~l~~~A~~~~~~i~ipsGAigGlD~l~aa~ 133 (265)
T PRK13303 70 G-HA-ALKEHVVPILKAGIDCAVASVGALADEALRERLEQAAEAGGARLHLLSGAIGGIDALAAAK 133 (265)
T ss_pred C-HH-HHHHHHHHHHHCCCCEEEECCHHHCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHH
T ss_conf 8-89-9999999999729988998815857988999999999868975997262344067999987
No 22
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.98 E-value=6.1e-09 Score=82.81 Aligned_cols=128 Identities=23% Similarity=0.346 Sum_probs=97.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC--CCCCHHCCCHHHHHCCCCCCEEEECCC
Q ss_conf 699998256678999999999899999973996599999826852002788--771022078889844889989998648
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGID--CLRYEWFDDPLIMAGEADIDVFVELIG 82 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~--~~~~~~~~d~~~li~~~~IDvVVEliG 82 (438)
++|||+|||.+|+.+.+.+.... .++++..+++|+.++.+... ... .-..+.++++ ++.|++||+-+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~--------~~~e~v~v~D~~~ek~~~~~~~~~~-~~~s~ide~~--~~~DlvVEaAS 69 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGR--------VDFELVAVYDRDEEKAKELEASVGR-RCVSDIDELI--AEVDLVVEAAS 69 (255)
T ss_pred CEEEEEECCHHHHHHHHHHHCCC--------CCEEEEEEECCCHHHHHHHHHHCCC-CCCCCHHHHH--HCCCEEEEECC
T ss_conf 95789823378899999986688--------6436999944887888888860388-7635677773--02442543078
Q ss_pred CCCCCHHHHHHHHHHCCEEEEEECHHHHHHH--HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 8885113578888632702885041778876--89999875313966996056453013189998
Q gi|254780900|r 83 GEDYPAYDAVRIALMRGCHVVTANKALIASH--GKDLALLAQKNNAILNFEAAVAGGIPIIRILK 145 (438)
Q Consensus 83 g~~~pA~~~i~~AL~~GkhVVTANKallA~~--g~eL~~lA~~~gv~l~~easV~ggiPii~~l~ 145 (438)
. ....+|..++|++|+||+-..-..++.. .+.|+++|+..|.++++-.---||+-+++.+|
T Consensus 70 -~-~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGGlD~l~aar 132 (255)
T COG1712 70 -P-EAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGGLDALAAAR 132 (255)
T ss_pred -H-HHHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
T ss_conf -8-99999869999659988999512206867999999998538947993376401278888743
No 23
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.85 E-value=4.8e-08 Score=76.51 Aligned_cols=130 Identities=15% Similarity=0.214 Sum_probs=88.3
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEEECCCC
Q ss_conf 26999982566789999999998999999739965999998268520027887710220788898448899899986488
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFVELIGG 83 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVVEliGg 83 (438)
+.||||+|||.+|+.+++.|.... ....++..+..+..++... ........++..+++.. ..|+|||+-|
T Consensus 2 ~~rVgiiG~GAIG~~Va~~l~~~~-------~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~lla~-~pDlVvE~As- 71 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADA-------AQPCQLAALTRNAADLPPA-LAGRVALLDGLPGLLAW-RPDLVVEAAG- 71 (267)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCC-------CCCEEEEEEECCHHHHHHH-HCCCCCCCCCHHHHHCC-CCCEEEECCC-
T ss_conf 517999851699999999986177-------7652899981533555555-32566545775777412-8999998979-
Q ss_pred CCCCHHHHHHHHHHCCEEEEEECHHHHHH--HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH
Q ss_conf 88511357888863270288504177887--68999987531396699605645301318999
Q gi|254780900|r 84 EDYPAYDAVRIALMRGCHVVTANKALIAS--HGKDLALLAQKNNAILNFEAAVAGGIPIIRIL 144 (438)
Q Consensus 84 ~~~pA~~~i~~AL~~GkhVVTANKallA~--~g~eL~~lA~~~gv~l~~easV~ggiPii~~l 144 (438)
.+ .-++|...+|++|+++++..=+-++. -+++|.++|+++|.+++.-+--=||+-.++..
T Consensus 72 ~~-Av~~~a~~vL~~G~dlvv~SvGALaD~~l~~~l~~~A~~~g~~i~ipsGAIgGlD~l~aa 133 (267)
T PRK13301 72 QQ-AIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLDYLQAV 133 (267)
T ss_pred HH-HHHHHHHHHHHCCCCEEEECHHHHCCHHHHHHHHHHHHHCCCEEEECCCHHHCHHHHHHH
T ss_conf 89-999999999975996999823784798899999999997798699747301046899987
No 24
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=98.69 E-value=3.1e-07 Score=70.84 Aligned_cols=130 Identities=20% Similarity=0.233 Sum_probs=93.9
Q ss_pred CEEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC-CCC----CCCCCCCC-----------------CH
Q ss_conf 26999982-566789999999998999999739965999998268-520----02788771-----------------02
Q gi|254780900|r 4 VLKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARD-KNI----DRGIDCLR-----------------YE 60 (438)
Q Consensus 4 ~ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~-~~k----~~~~~~~~-----------------~~ 60 (438)
|-||+|+| .|.||++.++++.++.+ .+++.++++.+ .++ .+.+.+.. ..
T Consensus 1 mk~i~IlGsTGSIG~~tL~Vi~~~~~--------~f~v~~lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~~~~~~~~~ 72 (379)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRHPD--------RFRVVALSAGSNVELLAEQIREFRPKYVVVADEAAAKELKAALAGK 72 (379)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC--------CCEEEEEEECCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCC
T ss_conf 97899985695888999999995868--------7589999928979999999999499999992889999998755882
Q ss_pred H---CCCHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 2---0788898448899899986488885113578888632702885041778876899998753139669960564530
Q gi|254780900|r 61 W---FDDPLIMAGEADIDVFVELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGG 137 (438)
Q Consensus 61 ~---~~d~~~li~~~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~gg 137 (438)
. .+...+++...++|+||-.|-|.. +......||++||.|-.|||+-+...|+-|.+.|++++..+.
T Consensus 73 ~~~g~~~l~~~~~~~~~D~vi~aisG~~--GL~pt~~ai~~gk~laLANKEsiV~~G~li~~~~k~~~~~Ii-------- 142 (379)
T PRK05447 73 VLAGEEGLCELAALPEADVVVAAIVGAA--GLLPTLAAIKAGKRIALANKESLVCAGELVMDAAKKSGAQIL-------- 142 (379)
T ss_pred EEECHHHHHHHHHCCCCCEEEEEHHHHH--HHHHHHHHHHCCCEEEEECCCHHEECHHHHHHHHHHCCCEEE--------
T ss_conf 8868899999973678999998134364--579999999739938984340310247999999986398686--------
Q ss_pred HHH---HHHHHHHHHCCC
Q ss_conf 131---899987641286
Q gi|254780900|r 138 IPI---IRILKNYVEYDE 152 (438)
Q Consensus 138 iPi---i~~l~~~l~~~~ 152 (438)
|| -..+-++|.++.
T Consensus 143 -PvDSEH~Aifq~l~~~~ 159 (379)
T PRK05447 143 -PVDSEHSAIFQCLPGEN 159 (379)
T ss_pred -ECCHHHHHHHHHHHCCC
T ss_conf -43608899999972675
No 25
>LOAD_ACT consensus
Probab=98.52 E-value=5.1e-07 Score=69.32 Aligned_cols=71 Identities=7% Similarity=0.185 Sum_probs=62.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 799992488874899999988669957888822677877613599992104889999999986238300047
Q gi|254780900|r 355 FIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRY 426 (438)
Q Consensus 355 YLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~ 426 (438)
.|++.+.|+||+|++|+++|+++++||+++.|... +.++.+.++++++...+..+...+.++.++..+.+.
T Consensus 1 ~l~v~~~d~pGvLa~i~~~la~~~~nI~~i~~~~~-~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~v~~v 71 (76)
T LOAD_ACT 1 ILEVELEDRPGVLARVLGALAERGINIVSIEQSTS-EKGGLARIVFVVDVEDDEDLEKILKELLLLEDVLKV 71 (76)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCHHEEEECCC-CCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 97999957787799999999864989420670356-888668899999549979999999998457887889
No 26
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=98.51 E-value=1.8e-06 Score=65.45 Aligned_cols=154 Identities=19% Similarity=0.263 Sum_probs=99.4
Q ss_pred EEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC-CCCC----CCCCCC----------------------CCCH
Q ss_conf 982-56678999999999899999973996599999826-8520----027887----------------------7102
Q gi|254780900|r 9 VAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISAR-DKNI----DRGIDC----------------------LRYE 60 (438)
Q Consensus 9 iiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r-~~~k----~~~~~~----------------------~~~~ 60 (438)
|+| .|.||++.++++.++.+ +++|.++++. +.++ .+.+.+ ....
T Consensus 1 ILGSTGSIG~~tL~Vi~~~~~--------~f~V~~Lsa~~n~~~L~~q~~~f~Pk~v~i~d~~~~~~lk~~l~~~~~~~~ 72 (392)
T PRK12464 1 ILGSTGSIGTSTLDVVAAHPE--------RFKVVALTANYNIELLVQQIKRFQPRVVSVADAELADTLRARLSAAGSNTK 72 (392)
T ss_pred CCCCCCHHHHHHHHHHHHCCC--------CEEEEEEEECCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCCCCE
T ss_conf 959575989999999994868--------708999993887999999999949999999488999999998640688837
Q ss_pred HC---CCHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 20---788898448899899986488885113578888632702885041778876899998753139669960564530
Q gi|254780900|r 61 WF---DDPLIMAGEADIDVFVELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGG 137 (438)
Q Consensus 61 ~~---~d~~~li~~~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~gg 137 (438)
++ +...+++..+++|+|+-+|-|.. +.....+|+++||.|-.|||+-+...|+-+.+++++++..+.
T Consensus 73 v~~G~~~l~~~~~~~~~D~vv~Ai~G~a--GL~pt~~ai~~gk~iaLANKEslV~aG~li~~~~k~~~~~Ii-------- 142 (392)
T PRK12464 73 ITYGTDGLIDVATHDGSDLVVSSIVGVA--GLLPTLAALKAGKDIALANKETLVAAGHIVTDLAKQNGCRLL-------- 142 (392)
T ss_pred EEECHHHHHHHHHCCCCCEEEEECCCHH--HHHHHHHHHHCCCEEEEECCHHHHHCCHHHHHHHHHCCCEEE--------
T ss_conf 9868899999970778898999445353--469999999749907870515887377999999986298574--------
Q ss_pred HHH---HHHHHHHHHCCC-----CEEEEEEECCCH--HHHEEHHHCCCCCHHHHHH
Q ss_conf 131---899987641286-----203433314200--0000001006877889988
Q gi|254780900|r 138 IPI---IRILKNYVEYDE-----INRVYGIINGTC--NYILSHMNNLGLSFQDCLE 183 (438)
Q Consensus 138 iPi---i~~l~~~l~~~~-----i~~i~GIlnGT~--nyIL~~m~~~g~~f~~al~ 183 (438)
|| -+.+-++|.|.. |.+|.=-=+|-- ++=+++| +..+.++||+
T Consensus 143 -PVDSEHsAIfQ~L~~~~~~~~~V~kIiLTASGGPF~~~~~~~l--~~vT~~~AL~ 195 (392)
T PRK12464 143 -PVDSEHSAIFQCLNGENNKEGGIAKIIVTASGGAFRDKTREEL--ATLTAKDALK 195 (392)
T ss_pred -ECCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHCCCHHHH--HCCCHHHHCC
T ss_conf -2360578999997356642266118999657841413789987--0879888704
No 27
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=98.49 E-value=9.8e-07 Score=67.30 Aligned_cols=137 Identities=22% Similarity=0.263 Sum_probs=99.2
Q ss_pred CEEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE-CCCCCC----CCCCCCC------------------C
Q ss_conf 26999982-5667899999999989999997399659999982-685200----2788771------------------0
Q gi|254780900|r 4 VLKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISA-RDKNID----RGIDCLR------------------Y 59 (438)
Q Consensus 4 ~ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~-r~~~k~----~~~~~~~------------------~ 59 (438)
+.|+.|+| .|.+|.+.+++++++.+. +++.+++. ++.++- +.+.+.. .
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~--------f~vval~ag~n~~~l~~q~~~f~P~~v~~~d~~~~~~l~~~~~~~ 72 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRRNPDK--------FEVVALAAGKNVELLAEQIREFKPKYVVIADESAAKELEDLLPGT 72 (385)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCC--------EEEEEEECCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCC
T ss_conf 945999716873428899999968985--------799997348749999999998498458855767799987531476
Q ss_pred HH---CCCHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 22---078889844889989998648888511357888863270288504177887689999875313966996056453
Q gi|254780900|r 60 EW---FDDPLIMAGEADIDVFVELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAG 136 (438)
Q Consensus 60 ~~---~~d~~~li~~~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~g 136 (438)
++ .+...++...++.|+|+.+|-|..+ ..-..+|+++||.+-.|||+-+...|.-+.++++++|.++.
T Consensus 73 ~v~~G~~~l~e~a~~~~~d~Vm~AivG~aG--L~pTlaAi~aGK~iaLANKEsLV~aG~l~~~~~k~~g~~ll------- 143 (385)
T COG0743 73 EVLVGEEGLCELAAEDDADVVMNAIVGAAG--LLPTLAAIKAGKTIALANKESLVTAGELVMDAAKESGAQLL------- 143 (385)
T ss_pred EEEECHHHHHHHHHCCCCCEEEEHHHHHCC--CHHHHHHHHCCCCEEECCHHHHHCCHHHHHHHHHHCCCEEE-------
T ss_conf 586437789999846777877420310121--37799999828812434533531250999999997398770-------
Q ss_pred HHHH---HHHHHHHHHCCCCEEEEEE
Q ss_conf 0131---8999876412862034333
Q gi|254780900|r 137 GIPI---IRILKNYVEYDEINRVYGI 159 (438)
Q Consensus 137 giPi---i~~l~~~l~~~~i~~i~GI 159 (438)
|| -+.+-++|.|..-..+.-|
T Consensus 144 --PVDSEH~AifQ~L~~~~~~~v~~i 167 (385)
T COG0743 144 --PVDSEHNAIFQCLQGETQKGVKKI 167 (385)
T ss_pred --CCCCHHHHHHHHCCCCCCCCEEEE
T ss_conf --558357899987376556760179
No 28
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.28 E-value=1.9e-05 Score=58.22 Aligned_cols=128 Identities=21% Similarity=0.292 Sum_probs=90.6
Q ss_pred CEEEEEECC-CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC--------CCCCCCHHCCCHHHHHCCCCC
Q ss_conf 269999825-66789999999998999999739965999998268520027--------887710220788898448899
Q gi|254780900|r 4 VLKVGVAGL-GTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRG--------IDCLRYEWFDDPLIMAGEADI 74 (438)
Q Consensus 4 ~ikIgiiG~-G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~--------~~~~~~~~~~d~~~li~~~~I 74 (438)
+|||+|.|+ |.+|+.+++.+.++ .++++++..+|..+...+ .......+++|+.+++. +.
T Consensus 2 ~ikI~i~Ga~GrMG~~i~~~i~~~---------~~~~l~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~--~~ 70 (265)
T PRK00048 2 MIKVGVAGASGRMGRELIEAVEAA---------EDLELVAALDRPGSPLVGQDAGELAGLGKLGVPITDDLEAVLD--DF 70 (265)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHC---------CCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCEECCCHHHHHC--CC
T ss_conf 459999888887799999999868---------9979999994689723365356652767678431178988605--59
Q ss_pred CEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 899986488885113578888632702885041778876899998753139669960564530131899987
Q gi|254780900|r 75 DVFVELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILKN 146 (438)
Q Consensus 75 DvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~~ 146 (438)
||+|+-+- .....++++.|+++|+++|..--++-..+..+|.++++ ...++|...-.=|+-++..+-+
T Consensus 71 DVvIDFS~--p~~~~~~~~~~~~~~~~~ViGTTG~~~~~~~~i~~~s~--~ipil~apNfSlGvnll~~l~~ 138 (265)
T PRK00048 71 DVLIDFTT--PEATLENLEFALEHGKPLVIGTTGFTEEQLAALREAAK--KIPVVIAPNFSVGVNLLMKLAE 138 (265)
T ss_pred CEEEECCC--HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCC--CCCEEEECCHHHHHHHHHHHHH
T ss_conf 98998998--89999999999974997799608999899999997465--8878997855899999999999
No 29
>pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH.
Probab=98.10 E-value=3.4e-05 Score=56.45 Aligned_cols=109 Identities=26% Similarity=0.319 Sum_probs=77.2
Q ss_pred EEEEEECC-CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC------CCCHHCCCHHHHHCCCCCCEE
Q ss_conf 69999825-66789999999998999999739965999998268520027887------710220788898448899899
Q gi|254780900|r 5 LKVGVAGL-GTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDC------LRYEWFDDPLIMAGEADIDVF 77 (438)
Q Consensus 5 ikIgiiG~-G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~------~~~~~~~d~~~li~~~~IDvV 77 (438)
|||+|.|+ |.+|+.+++.+.++ .++++++..+|......+.+. .....+++..... ...|+|
T Consensus 1 ikV~i~Ga~GrMG~~i~~~i~~~---------~~~~lv~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~DVv 69 (122)
T pfam01113 1 IKVAVVGASGRMGRELIKAILEA---------PDFELVAAVDRPGSSLLGSDAGELAGPLGVPVTDDLEEVL--ADADVL 69 (122)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC---------CCCEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCHHHHC--CCCCEE
T ss_conf 98999889887899999999858---------9968999994389612254310014678711124477751--578889
Q ss_pred EECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9864888851135788886327028850417788768999987531396
Q gi|254780900|r 78 VELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNA 126 (438)
Q Consensus 78 VEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv 126 (438)
|+.+ ......++++.|+++|+++|..--++-..+.++|.++|++-++
T Consensus 70 IDFS--~p~~~~~~~~~~~~~~~~~ViGTTG~s~~~~~~i~~~a~~ipi 116 (122)
T pfam01113 70 IDFT--TPEATLENLELALKHGKPLVIGTTGFTEEQLAELKEAAKKIPI 116 (122)
T ss_pred EEEC--CHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCE
T ss_conf 9906--8789999999999679988998999999999999998445988
No 30
>pfam01842 ACT ACT domain. This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5.
Probab=98.08 E-value=2.7e-05 Score=57.23 Aligned_cols=65 Identities=14% Similarity=0.250 Sum_probs=54.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCC
Q ss_conf 27999924888748999999886699578888226778776135999921048899999999862383
Q gi|254780900|r 354 YFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKS 421 (438)
Q Consensus 354 yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~ 421 (438)
+.|++.+.|+||+|++|++.|++++|||..+.|....+. ....++++.........++++++.+.
T Consensus 1 ~~l~v~~~DrpG~l~~v~~~la~~ginI~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~ 65 (66)
T pfam01842 1 TVLEVGVPDRPGLLARVFGALADRGINIESISQSTSGDK---AGIVFIVVVVDEEDLEAALEALKKLL 65 (66)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCC---CCEEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 969997079883799999999877999478997466787---62599999667545999999998744
No 31
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.07 E-value=1e-05 Score=60.11 Aligned_cols=135 Identities=20% Similarity=0.229 Sum_probs=89.1
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCC---CCH-------HCCCHHHHHCCCC
Q ss_conf 269999825667899999999989999997399659999982685200278877---102-------2078889844889
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCL---RYE-------WFDDPLIMAGEAD 73 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~---~~~-------~~~d~~~li~~~~ 73 (438)
|.||-++|+|.||+.+++-|.++.+ .+ +.+++|+.++.+.+... +.+ -.+...+++++.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d---------~~-V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~- 69 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGD---------GE-VTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDF- 69 (389)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---------CE-EEEEECCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCC-
T ss_conf 9728998986667999999985789---------62-999848888999987533466316994256758899987257-
Q ss_pred CCEEEECCCCCCCCHHHHHHHHHHCCEEEEE-ECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH---
Q ss_conf 9899986488885113578888632702885-041778876899998753139669960564530131899987641---
Q gi|254780900|r 74 IDVFVELIGGEDYPAYDAVRIALMRGCHVVT-ANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILKNYVE--- 149 (438)
Q Consensus 74 IDvVVEliGg~~~pA~~~i~~AL~~GkhVVT-ANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~~~l~--- 149 (438)
|+|+.+..+. ..+..+++|+++|+|+|+ ++.... +.++...|+++|.....++-+.=|+- +.+-...+
T Consensus 70 -d~VIn~~p~~--~~~~i~ka~i~~gv~yvDts~~~~~---~~~~~~~a~~Agit~v~~~G~dPGi~--nv~a~~a~~~~ 141 (389)
T COG1748 70 -DLVINAAPPF--VDLTILKACIKTGVDYVDTSYYEEP---PWKLDEEAKKAGITAVLGCGFDPGIT--NVLAAYAAKEL 141 (389)
T ss_pred -CEEEEECCCH--HHHHHHHHHHHHCCCEEECCCCCCH---HHHHHHHHHHCCCEEECCCCCCCCHH--HHHHHHHHHHH
T ss_conf -7899928705--4299999999859988975467750---65654898874907971667686457--99999999986
Q ss_pred CCCCEEEE
Q ss_conf 28620343
Q gi|254780900|r 150 YDEINRVY 157 (438)
Q Consensus 150 ~~~i~~i~ 157 (438)
.|+|.+|.
T Consensus 142 ~~~i~si~ 149 (389)
T COG1748 142 FDEIESID 149 (389)
T ss_pred HCCCCEEE
T ss_conf 16564899
No 32
>TIGR01921 DAP-DH diaminopimelate dehydrogenase; InterPro: IPR010190 This entry represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine biosynthesis in Corynebacterium, Bacterioides, Porphyromonas and other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterised ..
Probab=98.05 E-value=2.3e-05 Score=57.68 Aligned_cols=134 Identities=16% Similarity=0.206 Sum_probs=80.7
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC--CCCCCCHHCCCHHHHHCCCCCCEEE
Q ss_conf 98726999982566789999999998999999739965999998268520027--8877102207888984488998999
Q gi|254780900|r 1 MAGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRG--IDCLRYEWFDDPLIMAGEADIDVFV 78 (438)
Q Consensus 1 Msk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~--~~~~~~~~~~d~~~li~~~~IDvVV 78 (438)
|+| ||+||+||||+|++|.+.|.++ .|+||++|..|+...... -+.+.+.+.++... ..+||+.+
T Consensus 1 M~k-iRaaIVGYGNlG~~V~~ai~~~---------PDmElvgv~~Rrd~~t~~va~~~~vy~V~~~~K~---~~dvdv~i 67 (326)
T TIGR01921 1 MSK-IRAAIVGYGNLGKSVEEAIQQA---------PDMELVGVFRRRDAETLDVAEELAVYAVVEDEKE---LEDVDVLI 67 (326)
T ss_pred CCE-EEEEEECCCCHHHHHHHHHHCC---------CCCEEEEEEEECCCCCCCHHHCCCHHHHHHHHHC---CCCEEEEE
T ss_conf 970-5788862232007999998408---------9804899887078875761122520222222320---28825999
Q ss_pred ECCCCCCCCHHHHHHHHHHCCEEEEE--ECHHHHHHHHHHHHHHHHHCCC-EEEEECCCC--CHH-HHHHHHHHHHHCCC
Q ss_conf 86488885113578888632702885--0417788768999987531396-699605645--301-31899987641286
Q gi|254780900|r 79 ELIGGEDYPAYDAVRIALMRGCHVVT--ANKALIASHGKDLALLAQKNNA-ILNFEAAVA--GGI-PIIRILKNYVEYDE 152 (438)
Q Consensus 79 EliGg~~~pA~~~i~~AL~~GkhVVT--ANKallA~~g~eL~~lA~~~gv-~l~~easV~--ggi-Pii~~l~~~l~~~~ 152 (438)
=|+|.... ..+-..-|..+..-|= =|-+-|..+.+-|-+.||++|. .+- |+| =|+ -|.|++-+.+..+-
T Consensus 68 LC~gsatd--~pe~~p~fA~~~nTvDsfD~H~~Ip~~r~~~DaaA~~~g~VSvi---s~GWDPG~fSi~Rv~geA~lp~g 142 (326)
T TIGR01921 68 LCTGSATD--LPEQKPYFAAFINTVDSFDIHTDIPDLRRTLDAAAKEAGAVSVI---SAGWDPGLFSINRVLGEAILPKG 142 (326)
T ss_pred ECCCCCCC--CCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE---EECCCCCCHHHHHHHHHHHHCCC
T ss_conf 73886455--54345100122101236502242078999999999861987899---83478872679999999750168
No 33
>pfam03435 Saccharop_dh Saccharopine dehydrogenase. This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase.
Probab=98.04 E-value=5.3e-05 Score=55.11 Aligned_cols=118 Identities=14% Similarity=0.193 Sum_probs=78.6
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC----CCCC---H-HCCC---HHHHHCCCCCC
Q ss_conf 9998256678999999999899999973996599999826852002788----7710---2-2078---88984488998
Q gi|254780900|r 7 VGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGID----CLRY---E-WFDD---PLIMAGEADID 75 (438)
Q Consensus 7 IgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~----~~~~---~-~~~d---~~~li~~~~ID 75 (438)
|-++|+|.||+.+++.|.++.+. .+| .+++|+.++.+.+. ..+. . -..| ..++++ +.|
T Consensus 1 IlvlGaG~vG~~~~~~L~~~~~~--------~~i-~vad~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~--~~d 69 (384)
T pfam03435 1 VLIIGAGGVGQGVAPLLARHGDV--------DEI-TVADRSLEKAQALAAPKLGLRFIAIAVDADNYEALAALLK--EGD 69 (384)
T ss_pred CEEECCCHHHHHHHHHHHHCCCC--------CEE-EEEECCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH--CCC
T ss_conf 98989778799999999728998--------869-9998988998987752369853899957789999999871--289
Q ss_pred EEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf 9998648888511357888863270288504177887689999875313966996056453013
Q gi|254780900|r 76 VFVELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIP 139 (438)
Q Consensus 76 vVVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiP 139 (438)
+||.+.+.. .+..+++.|+++|+|.|++.= ....-.+|.+.|+++|+.+..++-..=|+-
T Consensus 70 iVv~~~p~~--~~~~i~~~c~~~g~~yvd~s~--~~~~~~~l~~~a~~ag~~~~~~~G~~PGi~ 129 (384)
T pfam03435 70 LVINLAPPF--LSLTVLKACIETGVHYVDTSY--LREAQLALHEKAKEAGVTAVLGCGFDPGLV 129 (384)
T ss_pred EEEECCCHH--HCHHHHHHHHHCCCCEEECCC--CHHHHHHHHHHHHHCCCEEEECCCCCCCHH
T ss_conf 999998434--169999999973997575343--668899999977656968996788898846
No 34
>TIGR00036 dapB dihydrodipicolinate reductase; InterPro: IPR011770 Dihydrodipicolinate reductase is an enzyme found in bacteria and higher plants which is involved in the biosynthesis of diaminopimelic acid, a component of bacterial cell walls, and the essential amino acid L-lysine. It catalyses the the reduced pyridine nucleotide-dependent reduction of the alpha,beta-unsaturated cyclic imine, dihydrodipicolinate, to generate tetrahydrodipicolinate as shown below : 2,3-dihydrodipicolinate + NAD(P)H = 2,3,4,5-tetrahydrodipicolinate + NAD(P)(+) As this enzyme is not found in mammals it is a potential target for the development of novel antibacterial and herbicidal compounds. The structures of the Escherichia coli (P04036 from SWISSPROT) and Mycobacterium tuberculosis (P72024 from SWISSPROT) enzymes have been determined , . The enzyme is a homotetramer where each monomer is composed of two domains, an N-terminal NAD(P)H-binding domain which forms a Rossman fold, and a C-terminal substrate-binding domain that forms an open, mixed alpha-beta sandwich.Tetramerisation occurs exclusively through interactions between C-terminal domain residues. Both enzymes show relatively little preference for either NADH or NADPH as cofactor. Conformational changes upon substrate binding bring the cofactor and substrate into close proximity and allow catalysis to occur. ; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0005737 cytoplasm.
Probab=98.01 E-value=0.00028 Score=50.11 Aligned_cols=134 Identities=23% Similarity=0.297 Sum_probs=95.4
Q ss_pred CEEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC--------CCCHHCCCHHH--HHC--
Q ss_conf 26999982-566789999999998999999739965999998268520027887--------71022078889--844--
Q gi|254780900|r 4 VLKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDC--------LRYEWFDDPLI--MAG-- 70 (438)
Q Consensus 4 ~ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~--------~~~~~~~d~~~--li~-- 70 (438)
+|||++-| +|.+|+.+++.+.+.. .+++|++..+|......+-|. -...+.+|... .+.
T Consensus 1 ~ikvav~GA~GRMG~~~ik~~~~~y--------e~l~Lv~A~~~~~~~~~G~D~GEl~g~g~~gv~v~~~~~~~~~l~~~ 72 (281)
T TIGR00036 1 LIKVAVAGAAGRMGRELIKAVLQAY--------EGLKLVAAFERHGSSLQGTDIGELAGIGKVGVPVTDDLEAVLVLAFT 72 (281)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHC--------CCEEEEEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9835884788734699999999748--------98167888861688856654202422554784100057889998740
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 88998999864888851135788886327028850417788768999987531396699605645301318999876
Q gi|254780900|r 71 EADIDVFVELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILKNY 147 (438)
Q Consensus 71 ~~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~~~ 147 (438)
..+.||+|+.|- ...+++.++.|+++||.+|.--=++-=+.-.+|.++|+++|+...+-..-+=|+=++.-+-+.
T Consensus 73 ~~~~DVliDFT~--p~g~~~~~~~a~~~Gv~~V~GTTGf~e~~~~~~~~~a~~~~~~~v~A~NFa~GV~~~~K~~~~ 147 (281)
T TIGR00036 73 ETKPDVLIDFTT--PEGVVENVKIALENGVRLVVGTTGFSEEDLQELRDLAEKKGVAAVIAPNFAIGVNLMFKLLEK 147 (281)
T ss_pred CCCCCEEEECCC--CHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHH
T ss_conf 236864787386--056789999999668855771668998999999999986499789846506899999999999
No 35
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=97.98 E-value=0.00015 Score=51.90 Aligned_cols=160 Identities=17% Similarity=0.168 Sum_probs=102.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHH-H--------HC-C---CCEEEEEEEECCCCCCC-----C-C----------C
Q ss_conf 699998256678999999999899999-9--------73-9---96599999826852002-----7-8----------8
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFK-D--------LD-Q---HSFVVSAISARDKNIDR-----G-I----------D 55 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~-~--------~~-g---~~i~i~~i~~r~~~k~~-----~-~----------~ 55 (438)
|||||+|.|++.|++++-++..+..-. . .. | .++++++..|-+..|-. . + +
T Consensus 1 IrVaIvGvGncASslvqGieyyk~~~~~~~v~Glm~~~iggy~v~DIeiVaafDVD~~KVGkdlseAi~~~pN~~~~~~d 80 (351)
T TIGR03450 1 VRVAIVGVGNCASSLVQGVEYYYNADPTSTVPGLMHVQFGPYHVGDVEFVAAFDVDAKKVGFDLSDAIFASENNTIKIAD 80 (351)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCC
T ss_conf 95999913078999999999996389645667730022478674446999997327040477699997406898642178
Q ss_pred CCCC-------------------------HHCCCHHHHHCCCCCCEEEECCC-CCCCCHHHHHHHHHHCCEEEEEECHHH
Q ss_conf 7710-------------------------22078889844889989998648-888511357888863270288504177
Q gi|254780900|r 56 CLRY-------------------------EWFDDPLIMAGEADIDVFVELIG-GEDYPAYDAVRIALMRGCHVVTANKAL 109 (438)
Q Consensus 56 ~~~~-------------------------~~~~d~~~li~~~~IDvVVEliG-g~~~pA~~~i~~AL~~GkhVVTANKal 109 (438)
.+.. .-..|..+.+++...|++|..+. |.+..++-|+..||++|.+.|-|--.+
T Consensus 81 vp~~gv~V~~G~~lDG~~~~~~~~i~~~~~~~~Dvv~~lk~~~~dVlvnylPvGse~At~~YA~~aL~AG~aFVN~iP~f 160 (351)
T TIGR03450 81 VPPTGVTVQRGPTLDGLGKYYRDTIEESDAEPVDVVQALKDAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFVNALPVF 160 (351)
T ss_pred CCCCCCEEEECCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEECCCCHH
T ss_conf 88879888556875653445550566653353669999986287468971576866999999998898498178335410
Q ss_pred HHHHHHHHHHHHHHCCCEEEEE---CCCCCHHHHHHHHHHHH--HCCCCEEEEEE-ECCCHHH
Q ss_conf 8876899998753139669960---56453013189998764--12862034333-1420000
Q gi|254780900|r 110 IASHGKDLALLAQKNNAILNFE---AAVAGGIPIIRILKNYV--EYDEINRVYGI-INGTCNY 166 (438)
Q Consensus 110 lA~~g~eL~~lA~~~gv~l~~e---asV~ggiPii~~l~~~l--~~~~i~~i~GI-lnGT~ny 166 (438)
+|.. ++..++++++|+.+.=. +.+| ++-+-++|.+.+ .|-++.+.+-+ +-|.|-|
T Consensus 161 IAsd-p~~~~~F~e~glpi~GDDiksq~G-ATi~hr~La~L~~~Rgv~v~~tyQlNiGGNtDF 221 (351)
T TIGR03450 161 IASD-PEWAKKFTDAGVPIVGDDIKSQVG-ATITHRVLAKLFEDRGVRLDRTMQLNVGGNMDF 221 (351)
T ss_pred CCCC-HHHHHHHHHCCCCEECCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEEEEECCCCCHH
T ss_conf 1589-899999998799787253011356-164799999999975975658999730465066
No 36
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=97.95 E-value=8.9e-05 Score=53.54 Aligned_cols=73 Identities=8% Similarity=0.144 Sum_probs=60.5
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 327999924888748999999886699578888226778776135999921048899999999862383000473
Q gi|254780900|r 353 EYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRYS 427 (438)
Q Consensus 353 ~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~~ 427 (438)
++-|-+-|.|+||||+.|+++|+..|.+|+|+.--+. ++.....+.++|+ ..+..+++..++|++|-.|.+..
T Consensus 2 rhtisvlVeN~pGvL~RV~glFsrRgyNIeSL~V~~t-e~~~iSR~Tiv~~-gd~~~ieQI~kQL~KLidVi~V~ 74 (172)
T CHL00100 2 KHTLSVLVEDEAGVLTRIAGLFARRGFNIESLAVGPA-EQIGISRITMVVP-GDNRTIEQLTKQLYKLVNILKVQ 74 (172)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECC-CCCCEEEEEEEEE-CCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 3699999977867999999998517867236997214-8998159999996-89999999999995582702643
No 37
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=97.93 E-value=9.2e-05 Score=53.44 Aligned_cols=70 Identities=11% Similarity=0.255 Sum_probs=57.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 799992488874899999988669957888822677877613599992104889999999986238300047
Q gi|254780900|r 355 FIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRY 426 (438)
Q Consensus 355 YLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~ 426 (438)
-|-+.|+|+||||+.|+++|+..+++|+|+.--+ .++.+...+.++++ ..+..+++.+++|+++-.|.+.
T Consensus 2 tisvlveN~pGvL~Rit~lF~rRg~NI~Sl~v~~-te~~~~sR~tivv~-~~~~~i~qi~kQL~KlidVi~V 71 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGP-TEDPGISRITIVVE-GDDDVIEQIVKQLNKLVDVLKV 71 (72)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEE-CCCCCEEEEEEEEE-CCHHHHHHHHHHHHCCCCEEEE
T ss_conf 7999997787899999999860785567899861-37998489999997-8889999999998577687995
No 38
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=97.93 E-value=9.2e-05 Score=53.44 Aligned_cols=73 Identities=11% Similarity=0.220 Sum_probs=60.1
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 327999924888748999999886699578888226778776135999921048899999999862383000473
Q gi|254780900|r 353 EYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRYS 427 (438)
Q Consensus 353 ~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~~ 427 (438)
++-|-+.|.|+||||+.|+++|+..+.+|+|+.--+. ++.....+.|+|+- .+..+++..++|++|-.|.+..
T Consensus 2 r~tisvlveN~~GvL~RisglFsrRg~NI~SL~v~~t-e~~~iSR~Tiv~~g-~~~~i~QI~kQL~KLidVi~V~ 74 (161)
T PRK11895 2 RHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVAPT-EDPGLSRITIVTSG-DERVLEQITKQLNKLIDVLKVV 74 (161)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECC-CCCCCEEEEEEEEC-CHHHHHHHHHHHHCCCCEEEEE
T ss_conf 4599999977867999999998506865466665024-79981599999968-9999999999996321403466
No 39
>PRK08577 hypothetical protein; Provisional
Probab=97.91 E-value=4.6e-05 Score=55.55 Aligned_cols=74 Identities=12% Similarity=0.213 Sum_probs=55.3
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCH-HHHHHHHHHHHCCCCCCCC
Q ss_conf 53279999248887489999998866995788882267787761359999210488-9999999986238300047
Q gi|254780900|r 352 KEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSG-KLIRDAIECFNGKSDAIRY 426 (438)
Q Consensus 352 ~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e-~~i~~ai~~i~~l~~v~~~ 426 (438)
.-|=+++.+.|+|||||+||+.||+|+|+|=.-..... ...+.+.++++-+-... -+++...+.|+.++.|++.
T Consensus 55 kl~ei~l~v~DrpGvLA~is~~La~h~vdil~te~~~l-~r~e~ae~v~IvDvS~~~~~~~el~~~Lk~le~VkeV 129 (135)
T PRK08577 55 KLVELELVVEDRPGVLAKISGLLAEHGVDILATECEEL-KRGELAECVIIVDVSKSDIDLKELEEELKALEEVKEV 129 (135)
T ss_pred EEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEHHHHEE-ECCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 58999999945975699999999874853111021100-0376100899998545779999999998724531489
No 40
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.89 E-value=0.00065 Score=47.47 Aligned_cols=127 Identities=24% Similarity=0.326 Sum_probs=85.3
Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC--------CCCCCCHHCCCHHHHHCCCC
Q ss_conf 7269999825-66789999999998999999739965999998268520027--------88771022078889844889
Q gi|254780900|r 3 GVLKVGVAGL-GTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRG--------IDCLRYEWFDDPLIMAGEAD 73 (438)
Q Consensus 3 k~ikIgiiG~-G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~--------~~~~~~~~~~d~~~li~~~~ 73 (438)
.+|||++.|+ |.+|+.+++.+.+. .++++.+..+|..+...+ .......+++|.. ....+
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~---------~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~--~~~~~ 69 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEA---------PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLL--LVKAD 69 (266)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCC---------CCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCEEECCHH--HCCCC
T ss_conf 9736999757872789999998528---------994699998137842234311232144655733206343--30468
Q ss_pred CCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH
Q ss_conf 98999864888851135788886327028850417788768999987531396699605645301318999
Q gi|254780900|r 74 IDVFVELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRIL 144 (438)
Q Consensus 74 IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l 144 (438)
.||+|+.+-. ...++++..|+++|+..|-.--+.-.++-..|.+++++ +.+.+.+.-.=|+-++.-|
T Consensus 70 ~DV~IDFT~P--~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~--v~vv~a~NfSiGvnll~~l 136 (266)
T COG0289 70 ADVLIDFTTP--EATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEK--VPVVIAPNFSLGVNLLFKL 136 (266)
T ss_pred CCEEEECCCC--HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH--CCEEEECCCHHHHHHHHHH
T ss_conf 9889989982--54699999999769986997999998999999999853--8989965640799999999
No 41
>pfam02670 DXP_reductoisom 1-deoxy-D-xylulose 5-phosphate reductoisomerase. This is a family of 1-deoxy-D-xylulose 5-phosphate reductoisomerases. This enzyme catalyses the formation of 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose-5-phosphate in the presence of NADPH. This reaction is part of the terpenoid biosynthesis pathway.
Probab=97.89 E-value=4.3e-05 Score=55.79 Aligned_cols=96 Identities=21% Similarity=0.308 Sum_probs=66.1
Q ss_pred EEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC-CC----CCCCCCC----------------------C
Q ss_conf 99982-5667899999999989999997399659999982685-20----0278877----------------------1
Q gi|254780900|r 7 VGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDK-NI----DRGIDCL----------------------R 58 (438)
Q Consensus 7 IgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~-~k----~~~~~~~----------------------~ 58 (438)
|+|+| .|.||++.++++.++++ ++++.+++..+- .+ .+.+.+. .
T Consensus 1 I~IlGsTGSIG~~tL~Vi~~~~~--------~f~v~~Lsa~~N~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~ 72 (129)
T pfam02670 1 ITILGSTGSIGTQTLDVIRRNPD--------RFEVVALSAGRNVELLAEQIKEFKPKYVAVADEEAAEELKEALAGAGLK 72 (129)
T ss_pred CEEECCCCHHHHHHHHHHHHCCC--------CEEEEEEEECCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCC
T ss_conf 98976786889999999995956--------7189999834789999999997399799995899999999863247887
Q ss_pred CHHC---CCHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHH
Q ss_conf 0220---78889844889989998648888511357888863270288504177887
Q gi|254780900|r 59 YEWF---DDPLIMAGEADIDVFVELIGGEDYPAYDAVRIALMRGCHVVTANKALIAS 112 (438)
Q Consensus 59 ~~~~---~d~~~li~~~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~ 112 (438)
.+++ +...+++..+++|+|+-+|-|.. +...+..|+++||.|-.|||+-+..
T Consensus 73 ~~i~~g~~~l~~~~~~~~~D~vi~AIsG~a--GL~pt~~ai~~gk~iaLANKEslV~ 127 (129)
T pfam02670 73 TEVLAGEEGLCELAALPEADIVVNAIVGAA--GLLPTLAAIKAGKTIALANKESLVA 127 (129)
T ss_pred CEEEECHHHHHHHHCCCCCCEEEEECCCCC--HHHHHHHHHHCCCEEEEECCHHHEE
T ss_conf 379878899999970778899998156501--3999999998699899986025223
No 42
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=97.80 E-value=0.00018 Score=51.45 Aligned_cols=69 Identities=12% Similarity=0.136 Sum_probs=57.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99992488874899999988669957888822677877613599992104889999999986238300047
Q gi|254780900|r 356 IRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRY 426 (438)
Q Consensus 356 LRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~ 426 (438)
||+...|+||+|++|+++|++++++|.++...... ++.+.+-+.-.-.....++..+.+|++++.|.+.
T Consensus 1 i~I~~~Dr~GlL~dI~~~is~~~~nI~~v~~~~~~--~~~~~~~~~v~V~d~~~L~~li~~l~~i~~V~~V 69 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDD--DGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDV 69 (71)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECC--CCEEEEEEEEEECCHHHHHHHHHHHHCCCCCEEE
T ss_conf 99999837787999999999879967999999758--9869999999988999999999998779991598
No 43
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=97.79 E-value=9.4e-05 Score=53.37 Aligned_cols=73 Identities=12% Similarity=0.313 Sum_probs=58.1
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 6532799992488874899999988669957888822677877613599992104889999999986238300047
Q gi|254780900|r 351 EKEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRY 426 (438)
Q Consensus 351 ~~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~ 426 (438)
..++-|-+.|.|+||||+.|+++|+.-+-+|+|+.--+. ++.+...+-++++ ..+ .+++.+++|.+|-.|.+.
T Consensus 6 ~~~~vlSvlV~N~pGVL~RV~gLFsrRgyNIeSL~v~~t-e~~~~SRiTivv~-~d~-~leQi~kQL~KLidVi~V 78 (96)
T PRK08178 6 HDNVILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPI-QDSDKSRIWLLVN-DDQ-RLEQMISQIDKLEDVLKV 78 (96)
T ss_pred CCCEEEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEEC-CCCCCEEEEEEEC-CCC-CHHHHHHHHHHCCCEEEE
T ss_conf 770899999957787899998887505668120788513-8998108999988-984-489999998615076999
No 44
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.68 E-value=0.00022 Score=50.77 Aligned_cols=170 Identities=15% Similarity=0.191 Sum_probs=101.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEEECCCC
Q ss_conf 26999982566789999999998999999739965999998268520027887710220788898448899899986488
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFVELIGG 83 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVVEliGg 83 (438)
.||||++|+|++|+++++.|.+ .|.+ + .+.+|+.++...+......+.+++.++.... |+|+=+...
T Consensus 1 ~MkIgfIGlG~MG~~ma~~L~~--------~G~~--v-~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~~--dvvi~~l~~ 67 (295)
T PRK11559 1 TMKVGFIGLGIMGKPMSKNLLK--------AGYS--L-VVYDRNPEAIADVIAAGAETASTAKAIAEQC--DVIITMLPN 67 (295)
T ss_pred CCEEEEECCHHHHHHHHHHHHH--------CCCE--E-EEEECCHHHHHHHHHCCCCCCCCHHHHHHCC--CEEEEECCC
T ss_conf 9789998405769999999997--------8995--8-9992999999999985992039999998438--878996689
Q ss_pred CCCCHHHHH------HHHHHCCEEEEE-ECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH--------------
Q ss_conf 885113578------888632702885-04177887689999875313966996056453013189--------------
Q gi|254780900|r 84 EDYPAYDAV------RIALMRGCHVVT-ANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIR-------------- 142 (438)
Q Consensus 84 ~~~pA~~~i------~~AL~~GkhVVT-ANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~-------------- 142 (438)
.+ ...+.+ ...++.|+-+|- ..=.| ..-.++.+.++++|+.|. +|-|.||.|--.
T Consensus 68 ~~-~v~~v~~g~~gi~~~~~~g~iiid~sT~~p--~~~~~~a~~~~~~g~~~l-DaPVsGg~~~A~~G~L~~mvgG~~~~ 143 (295)
T PRK11559 68 SP-HVKEVALGENGIIEGAKPGTVLIDMSSIAP--LASREISEALKAKGIEML-DAPVSGGEPKAIDGTLSVMVGGDKAI 143 (295)
T ss_pred CC-CHHHHHHCCCCCHHCCCCCCEEEECCCCCH--HHHHHHHHHHHHCCCEEE-ECCCCCCHHHHHHCCCEEEECCCHHH
T ss_conf 81-077663077660113899988998999999--999999999996598389-42476886889848814996798899
Q ss_pred --HHHHHH--HCCCCEEEEEEECCCHHHHEEHHHC--CCCCHHHHHHHHHHCCC
Q ss_conf --998764--1286203433314200000000100--68778899887876176
Q gi|254780900|r 143 --ILKNYV--EYDEINRVYGIINGTCNYILSHMNN--LGLSFQDCLEEARRQGY 190 (438)
Q Consensus 143 --~l~~~l--~~~~i~~i~GIlnGT~nyIL~~m~~--~g~~f~~al~~Aq~lGy 190 (438)
-.+.-| -+.++..+-.+=+|+.-=+..+|.. .-..+.|++.-|++.|.
T Consensus 144 ~~~~~piL~~~~~~i~~~G~~G~g~~~Kl~nN~l~~~~~~a~aEal~la~k~Gl 197 (295)
T PRK11559 144 FDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGV 197 (295)
T ss_pred HHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999994265560342894589999999999999999999999999998599
No 45
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesizes 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms . In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis.; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process.
Probab=97.67 E-value=1.8e-05 Score=58.48 Aligned_cols=114 Identities=20% Similarity=0.249 Sum_probs=77.3
Q ss_pred EEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE-EECCCCCC---------CCCCCCCCHHCC-----------
Q ss_conf 999982-56678999999999899999973996599999-82685200---------278877102207-----------
Q gi|254780900|r 6 KVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAI-SARDKNID---------RGIDCLRYEWFD----------- 63 (438)
Q Consensus 6 kIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i-~~r~~~k~---------~~~~~~~~~~~~----------- 63 (438)
+|.|+| .|.+|...+++++.|.+. +++.+. +.||..+- +-.......-+.
T Consensus 5 ~i~iLGSTGSIG~~TL~v~~~~~~~--------f~~~aL~~GkNv~~~~~q~~~F~P~~va~~D~~~~~~Lk~~~~~~~~ 76 (406)
T TIGR00243 5 NIVILGSTGSIGKQTLDVVRHHPDK--------FQVVALSAGKNVALMVEQIEEFRPKFVAIDDAEKLKDLKEMLAETDF 76 (406)
T ss_pred CEEEECCCCCHHHHHHHHHHHCCCC--------EEEEEEECCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCC
T ss_conf 2367437750135689999738870--------89986403417999998887419844873587889999999872288
Q ss_pred ---------CHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf ---------888984488998999864888851135788886327028850417788768999987531396699
Q gi|254780900|r 64 ---------DPLIMAGEADIDVFVELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILN 129 (438)
Q Consensus 64 ---------d~~~li~~~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~ 129 (438)
-..++....|.|.|+..|=|. ...--..+|+++||.|..|||+-|..+|+=...++++.+++++
T Consensus 77 ~~~v~~G~~g~~e~a~~~d~d~V~~aivG~--aGLlPtl~Ai~~~K~iaLANKEsLVt~G~l~~d~vk~~~~~Ll 149 (406)
T TIGR00243 77 ETEVLVGEEGIVEMAAEEDADQVVNAIVGA--AGLLPTLKAIEAGKTIALANKESLVTAGHLVLDAVKKYGVKLL 149 (406)
T ss_pred CCEEEHHHHHHHHHHHCCCHHHHHHHHHHH--HHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 730210068999998315656889999877--8778889999847814401205477556789988973488104
No 46
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.66 E-value=0.00033 Score=49.60 Aligned_cols=72 Identities=8% Similarity=0.049 Sum_probs=56.8
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 32799992488874899999988669957888822677877613599992104889999999986238300047
Q gi|254780900|r 353 EYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRY 426 (438)
Q Consensus 353 ~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~ 426 (438)
++-|-+-|+|+||||+.|+++|+.-|-+|+|+.--+. ++.....+-+++ .+.+..+++..++|.+|-.|.+.
T Consensus 2 ~HtiSvLVen~pGVL~RVaGLFsrRGyNI~SL~Vg~t-e~~~~SRmTivv-~gd~~~ieQi~kQL~KLidVikV 73 (76)
T PRK06737 2 SHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNER-DTSGVSEMKLTA-VCTENEATLLVSQLKKLINVLQV 73 (76)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCC-CCCCCEEEEEEE-ECCCHHHHHHHHHHHCCCCEEEE
T ss_conf 3589999817876889877786216657112567466-799820799999-77813499999998505466997
No 47
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=97.65 E-value=0.00013 Score=52.44 Aligned_cols=121 Identities=18% Similarity=0.222 Sum_probs=78.6
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEEECCCC
Q ss_conf 26999982566789999999998999999739965999998268520027887710220788898448899899986488
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFVELIGG 83 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVVEliGg 83 (438)
|.|||++|+|++|++.++.|.++ |. ++ .+.+|+.++...+......+.+++.++++. .|+|+=+...
T Consensus 1 M~~Ig~IGlG~MG~~ma~~L~~~--------g~--~v-~v~d~~~~~~~~~~~~g~~~~~s~~e~~~~--~dvIi~~l~~ 67 (163)
T pfam03446 1 MAKIGFIGLGVMGSPMALNLLKA--------GY--TV-TVYNRTPEKVEELVAEGAVAAASPAEAAAS--ADVVITMVPA 67 (163)
T ss_pred CCEEEEEEEHHHHHHHHHHHHHC--------CC--EE-EEEECCHHHHHHHHHCCCEECCCHHHHHHC--CCEEEEECCC
T ss_conf 98899983679899999999977--------99--69-999797887799998399553999999861--9999992587
Q ss_pred CCCCHHHH------HHHHHHCCEEEEE-ECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH
Q ss_conf 88511357------8888632702885-0417788768999987531396699605645301318
Q gi|254780900|r 84 EDYPAYDA------VRIALMRGCHVVT-ANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPII 141 (438)
Q Consensus 84 ~~~pA~~~------i~~AL~~GkhVVT-ANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii 141 (438)
.+ ...++ +...+..|+-+|- .+=. ...-.++.+.++++|+.| .+|.|.||-+--
T Consensus 68 ~~-~v~~V~~~~~gl~~~~~~g~iiid~sT~~--p~~~~~~~~~~~~~g~~~-lDaPVsGg~~~A 128 (163)
T pfam03446 68 GA-AVDAVIFGEDGLLPGLKPGDIIIDGSTIS--PDDTRRLAKELKEKGIRF-LDAPVSGGEEGA 128 (163)
T ss_pred HH-HHHEEECCCCCHHHHCCCCCEEEECCCCC--HHHHHHHHHHHHHCCCCC-CCCCCCCCHHHH
T ss_conf 14-54022026313323135898898679899--999999999875303443-478776898999
No 48
>PRK10872 relA GDP/GTP pyrophosphokinase; Provisional
Probab=97.61 E-value=0.0016 Score=44.77 Aligned_cols=76 Identities=13% Similarity=0.176 Sum_probs=62.1
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 46532799992488874899999988669957888822677877613599992104889999999986238300047
Q gi|254780900|r 350 EEKEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRY 426 (438)
Q Consensus 350 ~~~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~ 426 (438)
..++..||+.+.|+||+|++||+++++++++|.++.-.. +.+...+.+-+.-+...-..++..+.+|++++.|.+.
T Consensus 663 ~~f~~~I~I~a~Dr~GlL~dIt~vIs~~~~NI~~v~~~s-d~~~~~~~i~~~ieV~d~~~L~~li~~Lr~i~~V~~V 738 (743)
T PRK10872 663 AGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRS-DTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDA 738 (743)
T ss_pred CEEEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEE-CCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCEE
T ss_conf 626899999997787899999999984799836635266-1789889999999978899999999997589994179
No 49
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=97.53 E-value=0.0011 Score=45.94 Aligned_cols=76 Identities=14% Similarity=0.235 Sum_probs=62.1
Q ss_pred HCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 446532799992488874899999988669957888822677877613599992104889999999986238300047
Q gi|254780900|r 349 EEEKEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRY 426 (438)
Q Consensus 349 ~~~~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~ 426 (438)
+..++-+|++.+.|+||+|++||+++++++++|.++.-... .+....+.+.-..-.-..++..++.|..++.|.+.
T Consensus 622 ~~~f~~~i~I~~~dr~GlL~dIt~vIs~~~~NI~~v~~~~~--~~~~~~~~i~ieV~d~~hL~~ii~~Lr~i~~V~~V 697 (702)
T PRK11092 622 EQEFITEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEK--DGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKV 697 (702)
T ss_pred CCEEEEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEC--CCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCEE
T ss_conf 87136999999967878899999999857998157886874--89889999999989899999999998679992569
No 50
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.51 E-value=0.00039 Score=49.02 Aligned_cols=93 Identities=18% Similarity=0.287 Sum_probs=57.3
Q ss_pred CCCCEEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC-CCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEE
Q ss_conf 98726999982-56678999999999899999973996599999826-85200278877102207888984488998999
Q gi|254780900|r 1 MAGVLKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISAR-DKNIDRGIDCLRYEWFDDPLIMAGEADIDVFV 78 (438)
Q Consensus 1 Msk~ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r-~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVV 78 (438)
|+++|||||+| .|-||+.++++|.++. +. -.++..++.+ +..+.-.+...... ..+..+. .-.++|+++
T Consensus 1 M~~~~~VaIvGATG~VG~~li~lL~~~~--~p-----~~~l~~laS~~saGk~i~~~~~~l~-v~~~~~~-~~~~vDlvf 71 (336)
T PRK05671 1 MSQPLDIAVVGATGSVGEALVQVLEERD--FP-----VGTLHLLASMESAGHSVPFAGKNLR-VREVDSF-DFSQVKLAF 71 (336)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC--CC-----CCEEEEEECCCCCCCEEEECCCEEE-EEECCCC-CCCCCCEEE
T ss_conf 9988879999986499999999986369--98-----0269999876568987546896789-9978824-424598899
Q ss_pred ECCCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 86488885113578888632702885
Q gi|254780900|r 79 ELIGGEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 79 EliGg~~~pA~~~i~~AL~~GkhVVT 104 (438)
=+.++ + .+.++..++.++|.-||-
T Consensus 72 fa~~~-~-vs~~~a~~~~~aG~~VID 95 (336)
T PRK05671 72 FAAGA-A-VSRSFAEKALAAGCSVID 95 (336)
T ss_pred ECCCH-H-HHHHHHHHHHHCCCEEEE
T ss_conf 86881-6-679989999976997995
No 51
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.44 E-value=0.00036 Score=49.26 Aligned_cols=76 Identities=13% Similarity=0.265 Sum_probs=51.6
Q ss_pred HHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 53446532799992488874899999988669957888822677877613599992104889999999986238300047
Q gi|254780900|r 347 VYEEEKEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRY 426 (438)
Q Consensus 347 ~~~~~~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~ 426 (438)
++-....|.|-+.-.|+||++.+|.++|++|+|+|..+..-.....+...-++-+-.+.++.. +++|.+++.+...
T Consensus 444 vd~~p~G~mL~~~n~D~PGvIG~VGtiLG~~~INIA~m~lgR~~~gg~Ai~vl~vD~~v~~ev----l~~l~~~~~I~~v 519 (524)
T PRK13581 444 VDAKPEGHMLVIRNRDRPGVIGKIGTLLGEHGINIASMQLGRDEAGGEALMVLSVDDPVPDEV----LEELKALPGILSA 519 (524)
T ss_pred EEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCHHCEECCCCCCCEEEEEEECCCCCCHHH----HHHHHCCCCCEEE
T ss_conf 998546768999707869714398888865698923357457889974799998799999999----9998668884289
No 52
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.42 E-value=0.00072 Score=47.18 Aligned_cols=68 Identities=10% Similarity=0.118 Sum_probs=54.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 799992488874899999988669957888822677877613599992104889999999986238300047
Q gi|254780900|r 355 FIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRY 426 (438)
Q Consensus 355 YLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~ 426 (438)
=|++.++|+||||.+||++.|+|+.+|-...|.-.. .+.+.+-|--+.+ .+++..+++|+++++|.+.
T Consensus 2 al~I~a~nk~GVL~~itgvIa~hg~NItytqqfi~~--~g~~~iY~ElE~v--~d~e~Li~~L~~~~~V~eV 69 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER--EGKARIYMELEGV--GDIEELVEELRSLPIVREV 69 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEEC--CCEEEEEEEEECC--CCHHHHHHHHHCCCCEEEE
T ss_conf 379995687746999887998648986999999807--9828999999679--9989999998779955999
No 53
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase; InterPro: IPR005676 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor. This entry represents the subgroup of aspartate dehydrogenases found primarily in organisms lacking peptidoglycan. In addition to its role in aspartate metabolism, the enzyme from Sulfolobus solfataricus has been shown recently to exhibit RNase activity, suggesting that these enzymes may perform additional cellular functions .; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0009086 methionine biosynthetic process, 0009088 threonine biosynthetic process.
Probab=97.36 E-value=0.00069 Score=47.32 Aligned_cols=308 Identities=14% Similarity=0.142 Sum_probs=156.7
Q ss_pred EEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC--CCCC--------CCCCCHH-------CCCHH
Q ss_conf 6999982-566789999999998999999739965999998268520--0278--------8771022-------07888
Q gi|254780900|r 5 LKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI--DRGI--------DCLRYEW-------FDDPL 66 (438)
Q Consensus 5 ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k--~~~~--------~~~~~~~-------~~d~~ 66 (438)
||||+|| .|.||+-|+++|.+|.. .|+|..+++++.+. ..+- ..+-... ..|+.
T Consensus 1 ~~VavLGaTG~VGq~f~~lL~~HPr--------~Fe~~~v~AS~~saGk~Yge~~~W~~~~~g~~Pe~~~dl~i~~~~p~ 72 (358)
T TIGR00978 1 VRVAVLGATGLVGQKFVKLLEKHPR--------YFELAKVVASERSAGKRYGEVVKWREILSGDIPEEVRDLEIVETEPV 72 (358)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCC--------EEEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCHHHCCCEEECCCCC
T ss_conf 9689970655468999999752698--------12288988368655767445430121236858432347654134743
Q ss_pred HHHC-CCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECH-H-------HH--HHHHHHHHHHHH---HC----CCEE
Q ss_conf 9844-8899899986488885113578888632702885041-7-------78--876899998753---13----9669
Q gi|254780900|r 67 IMAG-EADIDVFVELIGGEDYPAYDAVRIALMRGCHVVTANK-A-------LI--ASHGKDLALLAQ---KN----NAIL 128 (438)
Q Consensus 67 ~li~-~~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTANK-a-------ll--A~~g~eL~~lA~---~~----gv~l 128 (438)
.+.. ++++|+|.-+. ....|.++=.+..++|++|+| |- + || .+==.+.+++.+ ++ |.-+
T Consensus 73 ri~~d~~dVD~vfSAL--p~~~A~~~E~~la~~G~~VfS-NAs~~RmdpdVPli~PEVN~~hL~l~~~Q~~RrgW~G~iv 149 (358)
T TIGR00978 73 RIAEDHKDVDIVFSAL--PSEVAEEVEPKLAEEGIIVFS-NASAHRMDPDVPLIVPEVNSDHLELLKVQKERRGWKGFIV 149 (358)
T ss_pred EEEECCCCCEEEEECC--CHHHHHHHHHHHHHCCCEEEE-CCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCCCCCCEEE
T ss_conf 3566179826998149--979999999999856988987-6847788888677833356147999985400168861799
Q ss_pred EEECCCCCHHHH-HHHHHHHHHCCCCEEEEEEECCCHHHHEEHHHC-CCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 960564530131-899987641286203433314200000000100-687788998878761761565322321178999
Q gi|254780900|r 129 NFEAAVAGGIPI-IRILKNYVEYDEINRVYGIINGTCNYILSHMNN-LGLSFQDCLEEARRQGYAEGDATFDINGVDSSH 206 (438)
Q Consensus 129 ~~easV~ggiPi-i~~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~~-~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~ 206 (438)
-=--+...|+-+ |++|++...-.+|. ++-|.. .|.-|.=+ |+
T Consensus 150 tNPNC~t~~lTl~LkPl~d~~~~~~V~-------------v~TmQAvSGAGY~GV-------------p~---------- 193 (358)
T TIGR00978 150 TNPNCTTAGLTLALKPLIDAFGIKKVI-------------VTTMQAVSGAGYPGV-------------PS---------- 193 (358)
T ss_pred ECCHHHHHHHHHHHHHHHHCCCCCEEE-------------EEEECCHHCCCCCCC-------------CH----------
T ss_conf 576167887761013464305845699-------------987200014888887-------------54----------
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCEEEEE-EEEEE---CCCCCEEEEEEEEEECCCCCCCCCCC
Q ss_conf 999999998188555310001223204767403478719858741-01331---36783569999864167730003665
Q gi|254780900|r 207 KIAILSAIAFGIDTSVEGVYCEGISNITLEDIRGAADFGYCIKFL-AMARR---KGKGIIRYVYPVLLKYDSVMALVDGI 282 (438)
Q Consensus 207 Kl~ILa~~~~g~~~~~~~v~~~gI~~i~~~di~~a~~~g~~ikli-~~~~~---~~~~i~~~V~P~li~~~~~la~v~g~ 282 (438)
+.|+.|+. + -|.-|.-+..+| +.|++ |..+. ....++.++.-.=|| -..|-
T Consensus 194 -~~I~dN~i----------P-----~I~GEE~KIe~E---~~KilsGkl~~g~~~PA~~~~~at~~RVP------V~~GH 248 (358)
T TIGR00978 194 -MDILDNVI----------P-----HIGGEEEKIERE---TLKILSGKLENGKIEPAEFEVSATTTRVP------VLDGH 248 (358)
T ss_pred -HHHHCCCC----------C-----CCCCHHHHHHHH---HHHHHCCCCCCCEEEEECCEEEEEEEECC------CCCCC
T ss_conf -55533616----------5-----506335898762---13333440038846420440689987444------11164
Q ss_pred CCEEEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEEEECC
Q ss_conf 41689831131005897268766610206889999997417777655666678310023443885344653279999248
Q gi|254780900|r 283 TNAVVIETNGLGKLTMTGPGAGGSATASAVLGDICSIAKTNTQKSVSWALGKESSSFSVIHCDGVYEEEKEYFIRLTIRN 362 (438)
Q Consensus 283 ~Nai~i~~~~~g~~~~~G~GAG~~~TAsaV~sDli~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yYLRl~v~D 362 (438)
+-+|.|+++.-= =..+|..--++....+ ....+++.+- +=|+-..=+|
T Consensus 249 t~~v~v~~~~~~-----------------d~~EI~~~~~~f~~~P-------q~l~lP~~P~--------~p~~~~d~ed 296 (358)
T TIGR00978 249 TESVHVEFDKKF-----------------DIEEIREALKSFRGLP-------QKLGLPSAPE--------KPIIVRDEED 296 (358)
T ss_pred EEEEEEEECCCC-----------------CHHHHHHHHHHCCCCC-------CCCCCCCCCC--------CCEEEECCCC
T ss_conf 699999866877-----------------9899999998406776-------4257798869--------5379875886
Q ss_pred CCCHHHHHH--HHHHHCC--CCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHH
Q ss_conf 887489999--9988669--9578888226778776135999921048899999999862
Q gi|254780900|r 363 FEGILDKIT--SQMSDFN--ISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFN 418 (438)
Q Consensus 363 kpGVLa~It--~ilak~~--ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~ 418 (438)
+|----+.+ +--.+.| |++-++...... .+....|+.-|..-...=-.+|-..+
T Consensus 297 rPQPrlD~~nGGsa~~~GM~V~vGRlr~~~~f--~~~l~~VVLghNLVRGAAG~~lLnaE 354 (358)
T TIGR00978 297 RPQPRLDRDNGGSAAGKGMAVTVGRLREDSGF--RGSLKYVVLGHNLVRGAAGATLLNAE 354 (358)
T ss_pred CCCCHHHHCCCCCCCCCCCEEEEEEEEECCCC--CCCEEEEEEECCHHHHHHHHHHHHHH
T ss_conf 78504420258621268967897536434355--55113799723312588899999999
No 54
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=97.34 E-value=0.00043 Score=48.72 Aligned_cols=66 Identities=9% Similarity=0.191 Sum_probs=42.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999248887489999998866995788882267787761359999210488999999998623830004
Q gi|254780900|r 356 IRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIR 425 (438)
Q Consensus 356 LRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~ 425 (438)
|-+.-.|+||++++|+++|++++|+|..+.- .+.+.++.+-.++-++..... +++++|++++.+..
T Consensus 2 Lii~~~D~PGvIg~v~~~Lg~~~INIa~m~l-~R~~~g~~A~~vi~vD~~v~~---~~l~~i~~~~~V~~ 67 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQV-GRDEPGGEALMVLSVDEPVPD---EVLEELRALPGILS 67 (73)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCHHHHHH-CCCCCCCEEEEEEEECCCCCH---HHHHHHHCCCCCCE
T ss_conf 8998169899289999999870977888432-576899878999990899999---99999975989528
No 55
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.31 E-value=0.0021 Score=43.89 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=43.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCC
Q ss_conf 79999248887489999998866995788882267787761359999210488999999998623830
Q gi|254780900|r 355 FIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSD 422 (438)
Q Consensus 355 YLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~ 422 (438)
.|-+.|.|+||+|++||++|++++|+|.|+.-....+. +..-+|+ .+.-.+-...++.|+...+
T Consensus 3 rIev~V~Dr~G~La~va~i~~~~~iNI~Sv~vyp~~~~-~~~ilv~---Rv~T~~p~~li~~L~~~Gy 66 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEE-DNKILVF---RVQTMNPRPIIEDLRRAGY 66 (72)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEECCCC-CEEEEEE---EECCCCHHHHHHHHHHCCC
T ss_conf 59999579867299999999975975899998416889-8589999---9725996999999998879
No 56
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.30 E-value=0.0085 Score=39.66 Aligned_cols=189 Identities=15% Similarity=0.170 Sum_probs=93.3
Q ss_pred CCCCE-EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC---C-----CCCC----------CCCCCHH
Q ss_conf 98726-99998256678999999999899999973996599999826852---0-----0278----------8771022
Q gi|254780900|r 1 MAGVL-KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKN---I-----DRGI----------DCLRYEW 61 (438)
Q Consensus 1 Msk~i-kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~---k-----~~~~----------~~~~~~~ 61 (438)
|.++| +|+++|.|++|++++..+. ..|.++.+. +++.+ + .+.. ......+
T Consensus 1 M~~~Ik~VaViGAG~MG~gIA~~~a--------~~G~~V~l~---D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~i~~ 69 (310)
T PRK06130 1 MDNPIQNLAIIGAGAMGSGIAALFA--------SKGLDVVLI---DPMPGALERAAQVIERQLGVYAPGAIAGTLQRIRM 69 (310)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH--------HCCCCEEEE---ECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEE
T ss_conf 9899888989787799999999998--------589988999---79999999999999998653276669998741021
Q ss_pred CCCHHHHHCCCCCCEEEECCCCCCCC-HHHHHHHHHHC--CEE-EEEECHHHHHHHHHHHHHHHHH----CCCEEEEECC
Q ss_conf 07888984488998999864888851-13578888632--702-8850417788768999987531----3966996056
Q gi|254780900|r 62 FDDPLIMAGEADIDVFVELIGGEDYP-AYDAVRIALMR--GCH-VVTANKALIASHGKDLALLAQK----NNAILNFEAA 133 (438)
Q Consensus 62 ~~d~~~li~~~~IDvVVEliGg~~~p-A~~~i~~AL~~--Gkh-VVTANKallA~~g~eL~~lA~~----~gv~l~~eas 133 (438)
++|...+ .+.|+|+|++ .|.. .+.-+.+-|++ ..+ +++.|---+. -.+|.+..+. -|..|+.-+.
T Consensus 70 ~~~l~a~---~~aDlViEav--~E~l~iK~~lf~~le~~~~~~~IlASNTSsl~--is~ia~~~~~p~R~ig~HffnP~~ 142 (310)
T PRK06130 70 DAGLEAA---CGADLVIEAV--PEKLDLKRDIFARLDTLCDPQTIFATNTSGLS--INAIAQAVTRRERFVGTHFFTPAD 142 (310)
T ss_pred CCCHHHH---CCCCEEEECC--CCCHHHHHHHHHHHHCCCCCCCEEEECCCCCC--CHHHHHHCCCHHHEEEEEECCCCC
T ss_conf 3788896---6899999888--17789999999998606898838996488776--067888638987815544437767
Q ss_pred CCCHHHH----------HHHHHHHHHCCCCEEEEEEEC-CCHHHHEEHHH-----------CCCC-CHHHHHHHHHH--C
Q ss_conf 4530131----------899987641286203433314-20000000010-----------0687-78899887876--1
Q gi|254780900|r 134 VAGGIPI----------IRILKNYVEYDEINRVYGIIN-GTCNYILSHMN-----------NLGL-SFQDCLEEARR--Q 188 (438)
Q Consensus 134 V~ggiPi----------i~~l~~~l~~~~i~~i~GIln-GT~nyIL~~m~-----------~~g~-~f~~al~~Aq~--l 188 (438)
++--+=| +..+.+. ..++.+.-=+++ -+-.||.++|. ++|. +.+++ -.|-+ +
T Consensus 143 ~m~LVEIv~g~~Ts~~~~~~~~~~--~~~~gk~pvvv~kd~pGFi~NRl~~~~~~EA~~lv~eGvas~edI-D~~~~~~~ 219 (310)
T PRK06130 143 VIPLVEVVRNDDTSPQTVATVMAM--LRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDI-DEVVKWSL 219 (310)
T ss_pred CCCCEEECCCCCCCHHHHHHHHHH--HHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHCC
T ss_conf 766652237898989999999999--997198799988665880188889999999999998399999999-99867568
Q ss_pred CC--CC--CCCCCCCCHHHHHHHHHH
Q ss_conf 76--15--653223211789999999
Q gi|254780900|r 189 GY--AE--GDATFDINGVDSSHKIAI 210 (438)
Q Consensus 189 Gy--aE--~DP~~Di~G~Daa~Kl~I 210 (438)
|+ +- |=-..|+-|+|+...+.=
T Consensus 220 G~~~~~~GPf~l~D~vGLDv~~~v~~ 245 (310)
T PRK06130 220 GIRLALTGPLEQRDMNGLDVHLAIAS 245 (310)
T ss_pred CCCCCCCCCHHHCCCCCHHHHHHHHH
T ss_conf 99988898315104142989999999
No 57
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.30 E-value=0.00091 Score=46.45 Aligned_cols=66 Identities=14% Similarity=0.271 Sum_probs=43.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEE-EECCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99992488874899999988669957888822677877613599992-104889999999986238300047
Q gi|254780900|r 356 IRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMIT-HKVSGKLIRDAIECFNGKSDAIRY 426 (438)
Q Consensus 356 LRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiT-h~~~e~~i~~ai~~i~~l~~v~~~ 426 (438)
|-+.-.|+||++++|+++|++++|+|..+.--. ...++.+--++-+ .+.++. ++++|++++.|.+.
T Consensus 2 L~i~~~D~PG~Ig~i~~~L~~~~INIa~m~v~R-~~~g~~A~~ii~~D~~v~~~----~l~~i~~~~~I~~v 68 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR-KEKGDQALMVIEVDQPIDEE----VIEEIKKIPNIHQV 68 (71)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCHHEEEEC-CCCCCEEEEEEECCCCCCHH----HHHHHHCCCCCEEE
T ss_conf 899944869919999999986596803618751-58997899999928999999----99999759995699
No 58
>COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism]
Probab=97.25 E-value=0.00063 Score=47.61 Aligned_cols=165 Identities=18% Similarity=0.221 Sum_probs=94.6
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHH-HH-------HH-HCC---CCEEEEEEEECCCCCC-CC-----CCCCC--CH
Q ss_conf 9872699998256678999999999899-99-------99-739---9659999982685200-27-----88771--02
Q gi|254780900|r 1 MAGVLKVGVAGLGTVGSALIRSIQKREG-RF-------KD-LDQ---HSFVVSAISARDKNID-RG-----IDCLR--YE 60 (438)
Q Consensus 1 Msk~ikIgiiG~G~VG~~~~~~l~~~~~-~l-------~~-~~g---~~i~i~~i~~r~~~k~-~~-----~~~~~--~~ 60 (438)
|+.++||+|+|.|++.+.++.-|...+. .. .. ..+ -++++++-.+-+..|- ++ +..++ ..
T Consensus 2 ~~~~vrv~iiG~Gn~AssLvqgie~~k~~e~~~~~g~~~~~~~~~~~~dieivaafdvd~~KVg~dl~Eai~~~~n~~~~ 81 (362)
T COG1260 2 TTTMVRVAIIGVGNCASSLVQGIEYYKAGEDEPVPGLMHRDEGGYKVEDIEIVAAFDVDARKVGKDLSEAIKAPPNVTSK 81 (362)
T ss_pred CCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCEEEEEEECCCHHHCCHHHHHHHHCCCCCCCE
T ss_conf 76358899984263188898778988626887662453233057575644899740012755393499997167789733
Q ss_pred HCCC--------------------HHH-------HHCCCCCCEEEEC-----------C-CCCCCCHHHHHHHHHHCCEE
Q ss_conf 2078--------------------889-------8448899899986-----------4-88885113578888632702
Q gi|254780900|r 61 WFDD--------------------PLI-------MAGEADIDVFVEL-----------I-GGEDYPAYDAVRIALMRGCH 101 (438)
Q Consensus 61 ~~~d--------------------~~~-------li~~~~IDvVVEl-----------i-Gg~~~pA~~~i~~AL~~Gkh 101 (438)
++.| ..+ ..+....|+++++ . -|.+.+++-|..+||++|..
T Consensus 82 ~~~~~~~~Gv~v~~g~~Ldg~~~~l~~~~~~~~~~~e~~~~dvv~vL~~~~tE~lvny~p~gs~~a~~~YA~aal~aG~a 161 (362)
T COG1260 82 IAPDVPKTGVKVRRGPTLDGEGLHLAEYIERIQEESEAEAVDVVVVLNVAKTEVLVNYLPVGSESASYFYAAAALAAGVA 161 (362)
T ss_pred ECCCCCCCCCEECCCCCCCCCCCHHHHHCCHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 20566667967535677676441055531123202335644503574146741313556622267899999999974984
Q ss_pred EEEECHHHHHHHHHHHHHHHHHCCCEEEEECC--CCCHHHHHHHHHHHH--HCCCCEEEEEEE-CCCHHH
Q ss_conf 88504177887689999875313966996056--453013189998764--128620343331-420000
Q gi|254780900|r 102 VVTANKALIASHGKDLALLAQKNNAILNFEAA--VAGGIPIIRILKNYV--EYDEINRVYGII-NGTCNY 166 (438)
Q Consensus 102 VVTANKallA~~g~eL~~lA~~~gv~l~~eas--V~ggiPii~~l~~~l--~~~~i~~i~GIl-nGT~ny 166 (438)
-|-+--.++|.. +++.++++++|+.+.=.-- --|++|+-++|.+.| +|-++.++.-+= -|.+-|
T Consensus 162 fvN~~P~~iA~d-P~~~~~fee~g~pi~GDD~ksq~GaTi~h~~La~~f~~Rgvkv~~t~Q~NigGN~Df 230 (362)
T COG1260 162 FVNAIPVFIASD-PAWVELFEEKGLPIAGDDIKSQTGATILHRVLAQLFADRGVKVDRTYQLNIGGNTDF 230 (362)
T ss_pred EECCCCCCCCCC-HHHHHHHHHCCCCEECCCHHHHCCCCEEHHHHHHHHHHCCCEEEEEEEEECCCCHHH
T ss_conf 030557623489-899999987599555563154227722089999999974960515898713777177
No 59
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=97.23 E-value=0.0034 Score=42.48 Aligned_cols=169 Identities=19% Similarity=0.229 Sum_probs=108.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC-CCCCCCCHHCCCHHHHHCCCCCCEEEECCCC
Q ss_conf 699998256678999999999899999973996599999826852002-7887710220788898448899899986488
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDR-GIDCLRYEWFDDPLIMAGEADIDVFVELIGG 83 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~-~~~~~~~~~~~d~~~li~~~~IDvVVEliGg 83 (438)
.|||.+|+|.+|...+..|.+. |. + +.+.+|+.++.. ...........++.+.... .|+|+=+...
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a--------G~--~-v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~--aDvVitmv~~ 67 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA--------GH--E-VTVYNRTPEKAAELLAAAGATVAASPAEAAAE--ADVVITMLPD 67 (286)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--------CC--E-EEEEECCHHHHHHHHHHCCCEECCCHHHHHHH--CCEEEEECCC
T ss_conf 9079985735259999999977--------98--7-89980885665689997298003889999961--9989996179
Q ss_pred CCCCHH-HH------HHHHHHCCEEEEEECH-HHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH---------------
Q ss_conf 885113-57------8888632702885041-778876899998753139669960564530131---------------
Q gi|254780900|r 84 EDYPAY-DA------VRIALMRGCHVVTANK-ALIASHGKDLALLAQKNNAILNFEAAVAGGIPI--------------- 140 (438)
Q Consensus 84 ~~~pA~-~~------i~~AL~~GkhVVTANK-allA~~g~eL~~lA~~~gv~l~~easV~ggiPi--------------- 140 (438)
.++- +. +...++.|+-||-.+- .+. .-.++.+.++++|..+ .+|-|.||.|-
T Consensus 68 --~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~--~a~~~a~~~~~~G~~~-lDAPVsGg~~~A~~GtLtimvGG~~~ 142 (286)
T COG2084 68 --DAAVRAVLFGENGLLEGLKPGAIVIDMSTISPE--TARELAAALAAKGLEF-LDAPVSGGVPGAAAGTLTIMVGGDAE 142 (286)
T ss_pred --HHHHHHHHHCCCCHHHCCCCCCEEEECCCCCHH--HHHHHHHHHHHCCCCE-EECCCCCCCHHHHHCCEEEEECCCHH
T ss_conf --899999981853353337899789987899989--9999999999669868-94676588312320716999479999
Q ss_pred -HHHHHHHH--HCCCCEEEEEEECCCHHHHEEHHHC--CCCCHHHHHHHHHHCCCC
Q ss_conf -89998764--1286203433314200000000100--687788998878761761
Q gi|254780900|r 141 -IRILKNYV--EYDEINRVYGIINGTCNYILSHMNN--LGLSFQDCLEEARRQGYA 191 (438)
Q Consensus 141 -i~~l~~~l--~~~~i~~i~GIlnGT~nyIL~~m~~--~g~~f~~al~~Aq~lGya 191 (438)
+.-.+.-| -|.+|..+-..=.|..-=+.++|.- .-..+.|++.-|++.|.-
T Consensus 143 ~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld 198 (286)
T COG2084 143 AFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLD 198 (286)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99988999998607569878987059999999999999999999999999980979
No 60
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=97.22 E-value=0.0011 Score=45.95 Aligned_cols=72 Identities=14% Similarity=0.248 Sum_probs=60.7
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 32799992488874899999988669957888822677877613599992104889999999986238300047
Q gi|254780900|r 353 EYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRY 426 (438)
Q Consensus 353 ~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~ 426 (438)
++-|-+-+.|+||||+.++++|+.-+.+|+|+.--+.+. .....+-++|+. .+..+++..++++++-.+.+.
T Consensus 4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~-~~~SRiTivv~g-~~~~~EQi~kQL~kLidV~kV 75 (163)
T COG0440 4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTET-PGLSRITIVVSG-DEQVLEQIIKQLNKLIDVLKV 75 (163)
T ss_pred EEEEEEEEECCCCEEEHHHHHHHHCCCCCCEEEEEECCC-CCCEEEEEEECC-CCCHHHHHHHHHHHHCCCEEE
T ss_conf 489999997789814141688875176632079960278-981589999827-851689999998754350268
No 61
>PRK04435 hypothetical protein; Provisional
Probab=97.20 E-value=0.0037 Score=42.21 Aligned_cols=74 Identities=9% Similarity=0.096 Sum_probs=59.8
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 532799992488874899999988669957888822677877613599992104889999999986238300047
Q gi|254780900|r 352 KEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRY 426 (438)
Q Consensus 352 ~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~ 426 (438)
...-+-+...|+||+||+|-+.+|+++-||=.+.|--+-++-..+++-+-|- .....++..++.|++++.|.+.
T Consensus 67 r~iTl~l~l~d~~G~LS~vL~~ia~~~~NILTInQ~IPi~g~A~vtiSi~~s-~~~~~i~~ll~~l~~~~gV~~v 140 (146)
T PRK04435 67 RIITLSLLLEDRVGTLSKVLNVIAELGGNILTINQSIPINGRANVTLSIDTS-SMEGDIDELLEKLRNLDGVEKV 140 (146)
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEEEEC-CCCCCHHHHHHHHHHCCCEEEE
T ss_conf 6899999983887579999999997699789971688778867799999914-7667999999998707991589
No 62
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.20 E-value=0.0018 Score=44.37 Aligned_cols=69 Identities=10% Similarity=0.102 Sum_probs=55.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEEC-CHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99992488874899999988669957888822677877613599992104-889999999986238300047
Q gi|254780900|r 356 IRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKV-SGKLIRDAIECFNGKSDAIRY 426 (438)
Q Consensus 356 LRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~-~e~~i~~ai~~i~~l~~v~~~ 426 (438)
+-+.++|+||+||++.+.+|+++.||=.+.|--+.++- +.+.+.-+-. .+.++++.+++|++++.|.+.
T Consensus 3 l~l~l~d~~G~LS~vL~~ia~~~~NILTInQsIPi~g~--A~vtiS~d~s~~~~~i~~ll~~l~~i~gV~~v 72 (76)
T cd04888 3 LSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGR--ANVTISIDTSTMNGDIDELLEELREIDGVEKV 72 (76)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCE--EEEEEEEEECCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 99998288753999999999769839996478876888--99999999047766899999998707992799
No 63
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.19 E-value=0.0035 Score=42.34 Aligned_cols=69 Identities=13% Similarity=0.172 Sum_probs=55.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCC--CCEEEEEEEEEECCHHHHHHHHHHHHCCCCCC
Q ss_conf 9999248887489999998866995788882267787--76135999921048899999999862383000
Q gi|254780900|r 356 IRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEEN--SQEFSVFMITHKVSGKLIRDAIECFNGKSDAI 424 (438)
Q Consensus 356 LRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~--~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~ 424 (438)
||+.+.|+||.|+++++++++.+-||-.+.+.....+ -..+++.++-+.-....++..++.|+...+..
T Consensus 1 l~v~i~D~PG~L~~l~~~ia~~gaNI~~i~H~R~~~~~~~~~~~v~i~~Et~~~eh~~~i~~~L~~~Gy~v 71 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREAGYDV 71 (73)
T ss_pred CEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCE
T ss_conf 98993489817999999999869828999998645889887699999998499999999999999869971
No 64
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.19 E-value=0.0016 Score=44.74 Aligned_cols=143 Identities=22% Similarity=0.325 Sum_probs=76.8
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE-CCCCC------CCC----CC-------------CCCC
Q ss_conf 269999825667899999999989999997399659999982-68520------027----88-------------7710
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISA-RDKNI------DRG----ID-------------CLRY 59 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~-r~~~k------~~~----~~-------------~~~~ 59 (438)
++||||-|||++|+-+++.+.++.. ++++++|-+ .+++. ... +. ....
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~~--------dieVVaInd~t~~~~~A~Llk~Ds~hg~f~~~v~~~~~~~~v~g~~I 72 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERDG--------DIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGI 72 (335)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC--------CEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCEE
T ss_conf 9089994575788999999971789--------75999993689978998998642557887773224787489899526
Q ss_pred HH--CCCHHHHH-CCCCCCEEEECCCCCCCCHHHHHHHHHHCC--EEE-EEECHHH-HH--HHH--HHHHHHHHHCCCEE
Q ss_conf 22--07888984-488998999864888851135788886327--028-8504177-88--768--99998753139669
Q gi|254780900|r 60 EW--FDDPLIMA-GEADIDVFVELIGGEDYPAYDAVRIALMRG--CHV-VTANKAL-IA--SHG--KDLALLAQKNNAIL 128 (438)
Q Consensus 60 ~~--~~d~~~li-~~~~IDvVVEliGg~~~pA~~~i~~AL~~G--khV-VTANKal-lA--~~g--~eL~~lA~~~gv~l 128 (438)
++ +.|+..+- .+..+|+|||++|.-. ..+-..+-|++| |-| ++|-++- ++ .+| ...++. .+.=+.
T Consensus 73 ~v~~~~~p~~l~w~d~gvdiVve~Tg~f~--~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~-~~~iVs- 148 (335)
T COG0057 73 KVLAERDPANLPWADLGVDIVVECTGKFT--GREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDA-GHTIVS- 148 (335)
T ss_pred EEEECCCHHHCCCCCCCCCEEEECCCCCC--CHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECCCCCCCC-CCCEEE-
T ss_conf 88732896879812128639998998766--63347999874599789985789888617998525133578-884898-
Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHH
Q ss_conf 960564530131899987641286203433314200000
Q gi|254780900|r 129 NFEAAVAGGIPIIRILKNYVEYDEINRVYGIINGTCNYI 167 (438)
Q Consensus 129 ~~easV~ggiPii~~l~~~l~~~~i~~i~GIlnGT~nyI 167 (438)
--++|.-+-.|++++|.+. .||-.|+..-|
T Consensus 149 naSCTTNcLap~~kvl~d~---------fGI~~g~mTtV 178 (335)
T COG0057 149 NASCTTNCLAPVAKVLNDA---------FGIEKGLMTTV 178 (335)
T ss_pred ECCCHHHHHHHHHHHHHHH---------CCEEEEEEEEE
T ss_conf 7451130067879999886---------09459999999
No 65
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.18 E-value=0.0029 Score=42.94 Aligned_cols=73 Identities=11% Similarity=0.173 Sum_probs=60.3
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 32799992488874899999988669957888822677877613599992104889999999986238300047
Q gi|254780900|r 353 EYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRY 426 (438)
Q Consensus 353 ~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~ 426 (438)
+.-|.+.|.|++|+|..||++|.+-.-+|+++.-.+ .++.+....-++.|--.+..++..+++|+++-.|.+.
T Consensus 2 krtl~~~V~dq~gvLNRIT~lF~RrqfNI~sltVg~-te~~gIS~mt~vv~v~d~~~~eqlikqL~KqInVL~V 74 (84)
T PRK13562 2 TRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTH-SEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTV 74 (84)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC-CCCCCCCCEEEEEECCCHHHHHHHHHHHHHHEEEEEE
T ss_conf 618999995475088898999998517822688636-7898834269999648678999999999854557989
No 66
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.18 E-value=0.0013 Score=45.33 Aligned_cols=139 Identities=18% Similarity=0.199 Sum_probs=77.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC------CCCCCCC-------------CCHHCCC
Q ss_conf 26999982566789999999998999999739965999998268520------0278877-------------1022078
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI------DRGIDCL-------------RYEWFDD 64 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k------~~~~~~~-------------~~~~~~d 64 (438)
++||||-|||++|+-+++.+..+ .++++++|.+.+++- .+++++- .......
T Consensus 2 ~ikV~INGyGtIGkRVAdav~~q---------~DmelVGV~k~~pd~~a~~a~~kG~~vy~~~~~~~~~F~~aGi~v~Gt 72 (338)
T PRK04207 2 MIKVAVNGYGTIGKRVADAVAAQ---------DDMEVVGVSKTKPDYEARVAVERGYPLYVADPERLDAFEKAGIEVAGT 72 (338)
T ss_pred CEEEEEECCCCHHHHHHHHHHCC---------CCCEEEEEECCCCCHHHHHHHHCCCCEEECCHHHHHHHHHCCCCCCCC
T ss_conf 48999824860558998887359---------981899786799977899999869967853776665687569866676
Q ss_pred HHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEE--ECHHHHHHH-HHHHHH---HHHHCCCEEEEECCCCCHH
Q ss_conf 8898448899899986488885113578888632702885--041778876-899998---7531396699605645301
Q gi|254780900|r 65 PLIMAGEADIDVFVELIGGEDYPAYDAVRIALMRGCHVVT--ANKALIASH-GKDLAL---LAQKNNAILNFEAAVAGGI 138 (438)
Q Consensus 65 ~~~li~~~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVT--ANKallA~~-g~eL~~---lA~~~gv~l~~easV~ggi 138 (438)
..+++. +.|+||+++++--+ .+....-.++|+..|- ..|+-++.+ +..... ..-+.-+.+ -++++-|=.
T Consensus 73 iedll~--~aDvVvDcTP~g~G--~~Nk~~Y~~~g~kaIfQGGEk~~va~~sFna~~Ny~~a~Gk~~vrv-vSCNTTgL~ 147 (338)
T PRK04207 73 IEDLLE--KADIVVDATPGGVG--AKNKPLYEKAGVKAIFQGGEKAEVAEVSFNALANYEEAIGKDYVRV-VSCNTTGLC 147 (338)
T ss_pred HHHHHH--CCCEEEECCCCCCC--CCCHHHHHHCCCCEEEECCCCCCCCCCEEEEECCHHHHCCCCCEEE-EEECCCCHH
T ss_conf 889752--18999989997644--0022768875983799658876767750673014577638763799-653203457
Q ss_pred HHHHHHHHHHHCCCCEEEEEE
Q ss_conf 318999876412862034333
Q gi|254780900|r 139 PIIRILKNYVEYDEINRVYGI 159 (438)
Q Consensus 139 Pii~~l~~~l~~~~i~~i~GI 159 (438)
|++.+|++... |.++.+.
T Consensus 148 R~l~~L~~~~g---i~k~r~t 165 (338)
T PRK04207 148 RTLYPLREAFG---VKKVRAT 165 (338)
T ss_pred HHHHHHHHHCC---CCEEEEE
T ss_conf 88999987518---2269999
No 67
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.16 E-value=0.0024 Score=43.48 Aligned_cols=91 Identities=21% Similarity=0.222 Sum_probs=57.4
Q ss_pred CCCCEEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC--CCC-CC-C------CCCC---CHHCCCHH
Q ss_conf 98726999982-5667899999999989999997399659999982685--200-27-8------8771---02207888
Q gi|254780900|r 1 MAGVLKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDK--NID-RG-I------DCLR---YEWFDDPL 66 (438)
Q Consensus 1 Msk~ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~--~k~-~~-~------~~~~---~~~~~d~~ 66 (438)
|.| |||||+| -|-+|..++++|.+| ..+++..++.++. .+. .+ + ..+. .....+.+
T Consensus 1 M~k-ikvaIvGatGy~G~ELirlL~~H---------P~~ei~~l~aS~~~aGk~~~~~~~~~~~~~~p~~~~~l~~~~~~ 70 (350)
T PRK08664 1 MDK-LKVGVLGATGLVGQRFVQLLANH---------PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADLEVVSTD 70 (350)
T ss_pred CCC-CEEEEECCCCHHHHHHHHHHHCC---------CCCEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEECC
T ss_conf 997-77999898429999999999709---------99668999965533788415520322346676444650798688
Q ss_pred HHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 98448899899986488885113578888632702885
Q gi|254780900|r 67 IMAGEADIDVFVELIGGEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 67 ~li~~~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVT 104 (438)
+. .-.++|++.=+++ .+.+.+++...+++|+.||-
T Consensus 71 ~~-~~~~~DvvF~AlP--hg~s~~~~~~l~~~g~~VID 105 (350)
T PRK08664 71 PV-DVDDVDIVFSALP--SDVAAEVEEEFAKAGKPVFS 105 (350)
T ss_pred HH-HHCCCCEEEECCC--CHHHHHHHHHHHHCCCEEEE
T ss_conf 45-7438999999898--26999999999877988997
No 68
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.12 E-value=0.0021 Score=43.91 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=77.4
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC---CCCCCCCCCHHCCCHHHHHCCC---CC
Q ss_conf 98726999982566789999999998999999739965999998268520---0278877102207888984488---99
Q gi|254780900|r 1 MAGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI---DRGIDCLRYEWFDDPLIMAGEA---DI 74 (438)
Q Consensus 1 Msk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k---~~~~~~~~~~~~~d~~~li~~~---~I 74 (438)
|++++|+||+|-|++|.-+.--+.+ ...+++.....++.+- .|...+.-.....-.+.++..+ ++
T Consensus 1 ~~~k~~vAIiGsGnIGtDLm~Ki~R---------s~~le~~~~vG~dp~S~GL~rA~~lGv~ts~~GId~ll~~~~~~~i 71 (298)
T PRK08300 1 MMSKIKVAIIGSGNIGTDLMIKILR---------SPHLEPVAMVGIDPESDGLARARRLGVATTAEGIDGLLAHPEFDDI 71 (298)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHC---------CCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCCC
T ss_conf 9875349998888338999999865---------7761069998059898499999984996637679999618335687
Q ss_pred CEEEECCCCCCCCHHHHHHHHHHCCEEEE--EECH-HHHHHHHHHHHHHHHHCCCEEEEECCCCC--HHHHHHHHHH
Q ss_conf 89998648888511357888863270288--5041-77887689999875313966996056453--0131899987
Q gi|254780900|r 75 DVFVELIGGEDYPAYDAVRIALMRGCHVV--TANK-ALIASHGKDLALLAQKNNAILNFEAAVAG--GIPIIRILKN 146 (438)
Q Consensus 75 DvVVEliGg~~~pA~~~i~~AL~~GkhVV--TANK-allA~~g~eL~~lA~~~gv~l~~easV~g--giPii~~l~~ 146 (438)
|+|.+++.- ..|.++....-+.||-+| |.-+ ++...-.--|.+...+.|+..- |+|| -+|++..+..
T Consensus 72 diVFDATSA--~aH~~h~~~l~~~g~~~IDLTPAaiGp~~VP~VNl~~~l~~~NvNMV---TCGGQAtiPiv~Avsr 143 (298)
T PRK08300 72 DIVFDATSA--GAHVENAAKLRELGVRVIDLTPAAIGPYCVPAVNLDEHLDAPNVNMV---TCGGQATIPIVAAVSR 143 (298)
T ss_pred CEEEECCCH--HHHHHHHHHHHHCCCEEEECCCCCCCCEEECCCCHHHHCCCCCCCEE---EECCCHHHHHHHHHHH
T ss_conf 889978980--66899999999739879967700269878763778995579986436---5557302189999874
No 69
>pfam01118 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase
Probab=97.12 E-value=0.0008 Score=46.86 Aligned_cols=87 Identities=18% Similarity=0.200 Sum_probs=55.1
Q ss_pred EEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC--CCCCCCCC-----CCHHCCCHHHHHCCCCCCEE
Q ss_conf 999982-56678999999999899999973996599999826852--00278877-----10220788898448899899
Q gi|254780900|r 6 KVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKN--IDRGIDCL-----RYEWFDDPLIMAGEADIDVF 77 (438)
Q Consensus 6 kIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~--k~~~~~~~-----~~~~~~d~~~li~~~~IDvV 77 (438)
||||+| .|.||+.++++|.+|. .+++..+..++.+ +......+ ......+.... .-.++|++
T Consensus 1 kvaIiGatGyvG~eLirlL~~hp---------~~~i~~l~~s~~saG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dvv 70 (121)
T pfam01118 1 KVAIVGATGYVGQELLRLLAEHP---------PLELVALVASSRSAGKKVAFAGPWLTGGVDLLLEDVDPE-DLKDVDIV 70 (121)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---------CCCCEEEEEECCCCCCCHHHHCCCCCCCCCCEEEECCHH-HHCCCCEE
T ss_conf 99998936199999999997188---------755137885056589601441654246666447758977-85389899
Q ss_pred EECCCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 986488885113578888632702885
Q gi|254780900|r 78 VELIGGEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 78 VEliGg~~~pA~~~i~~AL~~GkhVVT 104 (438)
+-+++ .+.+.+++...+++|+.||-
T Consensus 71 f~alp--~~~s~~~~~~~~~~g~~VID 95 (121)
T pfam01118 71 FFALP--AGVSKELAPKLLEAGAVVID 95 (121)
T ss_pred EECCC--HHHHHHHHHHHHHCCCEEEE
T ss_conf 98387--68999999998715989987
No 70
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.10 E-value=0.0042 Score=41.82 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=46.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCC-CCCEEEEEEEEEECCHHHHHHHHHHHHCCCC
Q ss_conf 27999924888748999999886699578888226778-7761359999210488999999998623830
Q gi|254780900|r 354 YFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEE-NSQEFSVFMITHKVSGKLIRDAIECFNGKSD 422 (438)
Q Consensus 354 yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~-~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~ 422 (438)
|=|.+.|.|+||++++||++|++++|||..+.-.+..+ ......+-+ -++...+.|.+.|++..+
T Consensus 2 ydl~vdVpD~pG~Ia~vt~~L~~~~IsI~nI~Il~~RE~~~GvLri~F----~~~~d~~~A~~~L~~~~Y 67 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISF----KTQEDRERAKEILKEAGY 67 (69)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEE----CCHHHHHHHHHHHHHCCC
T ss_conf 279996799998699999999987987472487685147884799996----898999999999998495
No 71
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.08 E-value=0.0013 Score=45.40 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=57.1
Q ss_pred CCC-CEEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCE-EEEEEEE-CCCCCCCCCCCCCCHHCCCHHHHHCCCCCCE
Q ss_conf 987-26999982-566789999999998999999739965-9999982-6852002788771022078889844889989
Q gi|254780900|r 1 MAG-VLKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSF-VVSAISA-RDKNIDRGIDCLRYEWFDDPLIMAGEADIDV 76 (438)
Q Consensus 1 Msk-~ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i-~i~~i~~-r~~~k~~~~~~~~~~~~~d~~~li~~~~IDv 76 (438)
|+. .+||||+| .|.||+.++++|.++... ++ ++...+. |+..+.-.+...... ..+.. .-.-.++|+
T Consensus 1 m~~k~~nVaIvGATG~VG~~li~lL~~h~~f-------~v~~v~~~aS~~saGk~v~~~~~~~~-v~~~~-~~~~~~~Di 71 (347)
T PRK06728 1 MSEKGYHVAVVGATGAVGQKIIELLEKETKF-------NIAEVTLLSSKRSAGKTVQFKGREII-IQEAK-INSFEGVDI 71 (347)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCC-------CCCCEEEEECCCCCCCCEEECCCEEE-EEECC-HHHHHCCCE
T ss_conf 9988877999988039999999999727898-------75107998658779976268992789-98578-446516978
Q ss_pred EEECCCCCCCCHHHHHHHHHHCCEEEEEECH
Q ss_conf 9986488885113578888632702885041
Q gi|254780900|r 77 FVELIGGEDYPAYDAVRIALMRGCHVVTANK 107 (438)
Q Consensus 77 VVEliGg~~~pA~~~i~~AL~~GkhVVTANK 107 (438)
++=+.++ ..+.++..++.++|+-||.-..
T Consensus 72 vf~a~~~--~~s~~~~~~~~~~G~~VID~Ss 100 (347)
T PRK06728 72 AFFSAGG--EVSRQFVNQAVSSGAIVIDNTS 100 (347)
T ss_pred EEECCCH--HHHHHHHHHHHHCCCEEEECCH
T ss_conf 9976857--8899999999858969998975
No 72
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=97.07 E-value=0.0035 Score=42.39 Aligned_cols=142 Identities=21% Similarity=0.277 Sum_probs=75.6
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC------CC---------CCCC-------C--CC
Q ss_conf 26999982566789999999998999999739965999998268520------02---------7887-------7--10
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI------DR---------GIDC-------L--RY 59 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k------~~---------~~~~-------~--~~ 59 (438)
||||||-|||.+|+.+++.+... ...++++++|-+..... +. .+.. + ..
T Consensus 1 MikIgINGFGRIGR~vlR~~~~~-------~~~~ieiVaINd~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~v~g~~I 73 (337)
T PRK07403 1 MIRVAINGFGRIGRNFLRCWLGR-------ENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTI 73 (337)
T ss_pred CEEEEEECCCHHHHHHHHHHHHC-------CCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEECCCEEEECCEEE
T ss_conf 90999968887899999999856-------69986999984799889999986714789998985897199899999887
Q ss_pred HH--CCCHHHHH-CCCCCCEEEECCCCCCCCHHHHHHHHHHC--CEEEEEEC-HH---HHHHHH--HHHHHHHHHCCCEE
Q ss_conf 22--07888984-48899899986488885113578888632--70288504-17---788768--99998753139669
Q gi|254780900|r 60 EW--FDDPLIMA-GEADIDVFVELIGGEDYPAYDAVRIALMR--GCHVVTAN-KA---LIASHG--KDLALLAQKNNAIL 128 (438)
Q Consensus 60 ~~--~~d~~~li-~~~~IDvVVEliGg~~~pA~~~i~~AL~~--GkhVVTAN-Ka---llA~~g--~eL~~lA~~~gv~l 128 (438)
.+ ..|+.++- .+-++|+|+|++|-.. ..+-...-|++ +|=+|||- |. +.-..| ++.+.. +++.+.=
T Consensus 74 ~~~~~~~p~~i~W~~~gvDiViEcTG~f~--~~~~a~~Hl~~GakkViiSAP~k~~d~~tiV~GVN~~~~~~-~~h~IIS 150 (337)
T PRK07403 74 KCVSDRNPLNLPWAEWGIDLIIESTGVFV--TKEGASKHIQAGAKKVLITAPGKGEGIGTYVVGVNHHEYDH-EDYNIIS 150 (337)
T ss_pred EEEECCCHHHCCHHHCCCCEEEECCCCCC--CHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCHHHCCC-CCCEEEE
T ss_conf 88805996669801309989998986548--77889998756986799806998887666998426355375-4441897
Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCH
Q ss_conf 960564530131899987641286203433314200
Q gi|254780900|r 129 NFEAAVAGGIPIIRILKNYVEYDEINRVYGIINGTC 164 (438)
Q Consensus 129 ~~easV~ggiPii~~l~~~l~~~~i~~i~GIlnGT~ 164 (438)
.=.+|+-+=.|+++.|.+.+ ||.+|..
T Consensus 151 ~aSCTTNclAPv~kvL~~~f---------gI~~g~m 177 (337)
T PRK07403 151 NASCTTNCLAPIAKVIHDNF---------GIIKGTM 177 (337)
T ss_pred CCCHHHHHHHHHHHHHHHHC---------CEEEEEE
T ss_conf 36258766888999887515---------8759999
No 73
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.04 E-value=0.0042 Score=41.82 Aligned_cols=88 Identities=19% Similarity=0.242 Sum_probs=56.8
Q ss_pred CEEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC-CCCCC-----CCC-CCCHH-CCCHHHHHCCCCC
Q ss_conf 26999982-5667899999999989999997399659999982685-20027-----887-71022-0788898448899
Q gi|254780900|r 4 VLKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDK-NIDRG-----IDC-LRYEW-FDDPLIMAGEADI 74 (438)
Q Consensus 4 ~ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~-~k~~~-----~~~-~~~~~-~~d~~~li~~~~I 74 (438)
||||||+| .|.||+.++++|.+| ..+++..++.++. .+.-. +.. ....+ ..|+.++. .++
T Consensus 1 m~kVaIvGAtG~vG~eli~lL~~h---------p~~ei~~las~~saGk~i~~~~p~l~~~~~~~~~~~~~~~~~--~~~ 69 (345)
T PRK00436 1 MIKVAIVGASGYTGGELLRLLLNH---------PEVEIVYLTSRSSAGKPLSDLHPHLRGLVDLVLEPLDPEEIA--AGA 69 (345)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCC---------CCCEEEEEECCCCCCCCHHHHCCCCCCCCCCEEEECCHHHHC--CCC
T ss_conf 919999896618899999999809---------986799997578689737785811037778747649988942--699
Q ss_pred CEEEECCCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 899986488885113578888632702885
Q gi|254780900|r 75 DVFVELIGGEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 75 DvVVEliGg~~~pA~~~i~~AL~~GkhVVT 104 (438)
|+++=+.+. +.+.+++..+.++|+-||-
T Consensus 70 Divf~alp~--~~S~~~~~~~~~~g~~VID 97 (345)
T PRK00436 70 DVVFLALPH--GVSMELAPQLLEAGVKVID 97 (345)
T ss_pred CEEEECCCH--HHHHHHHHHHHHCCCEEEE
T ss_conf 999988983--8999999999866987998
No 74
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=97.04 E-value=0.0029 Score=42.89 Aligned_cols=96 Identities=16% Similarity=0.193 Sum_probs=58.4
Q ss_pred CCCCEEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE-ECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEE
Q ss_conf 98726999982-566789999999998999999739965999998-2685200278877102207888984488998999
Q gi|254780900|r 1 MAGVLKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAIS-ARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFV 78 (438)
Q Consensus 1 Msk~ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~-~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVV 78 (438)
|++.+||||+| .|.||+.++++|.++.= .-.++...+ .|+..+.-.+..... ...+..+. .-.++|+++
T Consensus 1 M~~~~~VaivGATG~VGq~~l~lL~e~~f-------p~~~l~~laS~~SaGk~i~~~~~~~-~v~~~~~~-~~~~~di~f 71 (337)
T PRK08040 1 MSEGWNIALLGATGAVGEALLETLAERQF-------PVGEIYALAREESAGETLRFGGKSI-TVQDAAEF-DWTQAQLAF 71 (337)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-------CCCEEEEEECCCCCCCEEEECCCEE-EEEECCCC-CCCCCCEEE
T ss_conf 99998799988850889999999971799-------8135999988888997777899188-99977703-324698899
Q ss_pred ECCCCCCCCHHHHHHHHHHCCEEEEEECH
Q ss_conf 86488885113578888632702885041
Q gi|254780900|r 79 ELIGGEDYPAYDAVRIALMRGCHVVTANK 107 (438)
Q Consensus 79 EliGg~~~pA~~~i~~AL~~GkhVVTANK 107 (438)
=+.| .+ .+.++...|.++|.-||....
T Consensus 72 f~a~-~~-~s~~~~~~a~~aG~~VIDnss 98 (337)
T PRK08040 72 FVAG-KE-ASAAYAEEATNAGCLVIDSSG 98 (337)
T ss_pred ECCC-CH-HHHHHHHHHHHCCCEEEECCH
T ss_conf 9177-17-888889999848959997961
No 75
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=96.99 E-value=0.0098 Score=39.22 Aligned_cols=76 Identities=9% Similarity=0.071 Sum_probs=64.5
Q ss_pred HCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 446532799992488874899999988669957888822677877613599992104889999999986238300047
Q gi|254780900|r 349 EEEKEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRY 426 (438)
Q Consensus 349 ~~~~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~ 426 (438)
...++..|++...|++|+|++|++++++.+++|.++.-... .+..+.+.+.-.--.-..+...+.+|..++.|...
T Consensus 623 ~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~--~~~~~~~~~~i~v~n~~~L~~i~~~l~~~~~V~~v 698 (701)
T COG0317 623 GQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD--KDQFATMQFTIEVKNLNHLGRVLARLKQLPDVISV 698 (701)
T ss_pred CCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCC--CCCEEEEEEEEEECCHHHHHHHHHHHHCCCCEEEE
T ss_conf 86348999999804656699999999857883699641236--78637999999978689999999998558982789
No 76
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.99 E-value=0.0013 Score=45.46 Aligned_cols=65 Identities=11% Similarity=0.205 Sum_probs=42.2
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCC
Q ss_conf 999248887489999998866995788882267787761359999210488999999998623830004
Q gi|254780900|r 357 RLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIR 425 (438)
Q Consensus 357 Rl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~ 425 (438)
-+.-.|+||++++|+++|++++|+|..+.-.. .+.++.+-.++-++...... ++++|++++.+.+
T Consensus 3 ~v~~~D~PGvi~~I~~~L~~~~iNI~~m~l~r-~~~g~~A~~ii~vD~~v~~~---~l~~i~~~~~v~~ 67 (71)
T cd04879 3 LIVHKDVPGVIGKVGTILGEHGINIAAMQVGR-KEKGGIAYMVLDVDSPVPEE---VLEELKALPGIIR 67 (71)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCHHHHHHCC-CCCCCEEEEEEEECCCCCHH---HHHHHHCCCCEEE
T ss_conf 89943979989999999998597889964123-67997589999908989999---9999976998089
No 77
>PRK08526 threonine dehydratase; Provisional
Probab=96.97 E-value=0.0033 Score=42.55 Aligned_cols=289 Identities=15% Similarity=0.168 Sum_probs=149.9
Q ss_pred HCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH--HHHHHHHCCCCEEEEEEECCCHHHHEEHHHCC
Q ss_conf 3270288504177887689999875313966996056453013189--99876412862034333142000000001006
Q gi|254780900|r 97 MRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIR--ILKNYVEYDEINRVYGIINGTCNYILSHMNNL 174 (438)
Q Consensus 97 ~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~--~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~~~ 174 (438)
++.+.||+|.- -.|+.-+.-.|+..|+.... -+--..|-.+ .++. -|.+|. + .
T Consensus 66 ~~~~GVVaaSa---GNHaqgvA~aa~~lgi~a~I--vmP~~ap~~Kv~~~r~--~GA~Vi-----l-------------~ 120 (403)
T PRK08526 66 QKQHGVIAASA---GNHAQGVAISAKHFGIKAVI--VMPESTPLLKVSGTKA--LGAEVI-----L-------------K 120 (403)
T ss_pred HHCCCEEEECC---CHHHHHHHHHHHHHCCCEEE--EECCCCCHHHHHHHHH--CCCEEE-----E-------------E
T ss_conf 65481799778---62899999999970998899--9566686999999982--698899-----9-------------7
Q ss_pred CCCHH----HHHHHHHHCCCCCCCCCCCCC---HHHHHHHHHHHHHHHHCCCCCCCCCH--HHH---HHHCCHHHHHHHH
Q ss_conf 87788----998878761761565322321---17899999999999818855531000--122---3204767403478
Q gi|254780900|r 175 GLSFQ----DCLEEARRQGYAEGDATFDIN---GVDSSHKIAILSAIAFGIDTSVEGVY--CEG---ISNITLEDIRGAA 242 (438)
Q Consensus 175 g~~f~----~al~~Aq~lGyaE~DP~~Di~---G~Daa~Kl~ILa~~~~g~~~~~~~v~--~~g---I~~i~~~di~~a~ 242 (438)
|.+|+ .|.+-|++.|+.=-+|-+|.+ |.-+. =+=||..+ .++|.+. +-| |+.+ -.+++
T Consensus 121 g~~~~ea~~~A~~~a~~~g~~~ihpfdd~~vIaGqGTi-glEileq~-----~d~D~vvvpvGGGGLisGi----a~a~K 190 (403)
T PRK08526 121 GDNFDEAYAFALEYAKENNLTFIHPFEDEEVMAGQGTI-ALEMLDEI-----SDLDMIVVPVGGGGLISGI----ASAAK 190 (403)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCH-HHHHHHHC-----CCCCEEEECCCCCCHHHHH----HHHHH
T ss_conf 89858999999999986043054835786576253238-99999755-----6899899858886168999----99998
Q ss_pred HCCCEEEEEEEEEECCCCCEEE---EEEEEE--------------ECCCCCCC-CCCCCCEEEEEEEEE----------E
Q ss_conf 7198587410133136783569---999864--------------16773000-366541689831131----------0
Q gi|254780900|r 243 DFGYCIKFLAMARRKGKGIIRY---VYPVLL--------------KYDSVMAL-VDGITNAVVIETNGL----------G 294 (438)
Q Consensus 243 ~~g~~ikli~~~~~~~~~i~~~---V~P~li--------------~~~~~la~-v~g~~Nai~i~~~~~----------g 294 (438)
++.-.+|.+|+--........+ =+|.-+ |-+.+|.- -+.++..+.+.-+.. -
T Consensus 191 ~~~P~ikViGVEpe~a~~m~~Sl~~g~~v~~~~~~tiaDGlav~~~g~~tf~i~~~~vD~iv~V~e~eI~~A~~~l~e~~ 270 (403)
T PRK08526 191 QINPNIKIIGVGAKGAPAMKESFHAKKIKNSKSVRTIADGIAVRDASPITLAIILECVDDFVQVDDEEIANAILFLLEKQ 270 (403)
T ss_pred HHCCCCCEEEECCCCCHHHHHHHHCCCCEECCCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHC
T ss_conf 62998838996647876899998769945348878240342357666256999997089679979999999999999856
Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 05897268766610206889999997417777655666678310023443885344653279999248887489999998
Q gi|254780900|r 295 KLTMTGPGAGGSATASAVLGDICSIAKTNTQKSVSWALGKESSSFSVIHCDGVYEEEKEYFIRLTIRNFEGILDKITSQM 374 (438)
Q Consensus 295 ~~~~~G~GAG~~~TAsaV~sDli~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yYLRl~v~DkpGVLa~It~il 374 (438)
.++..|.|| -+- +|++++-++..++.+-...--.=+.....+...--......-..+|+++...|+||.|+++++++
T Consensus 271 k~vvEpaGA--~~l-AAll~~~~~~~~gk~Vv~ilsGGNiD~~~l~~ii~r~l~~~gr~~~~~v~~~d~pG~l~~~~~~i 347 (403)
T PRK08526 271 KIVVEGAGA--AGV-AALLHQKINLQKGAKIGVVLSGGNIDVQMLNVIIEKGLIKSYRKMKLHVTLVDKPGALMGLTDIL 347 (403)
T ss_pred CCCCCCCHH--HHH-HHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 644257437--999-99972762011699799997158889889999999988855998999998688996799999997
Q ss_pred HHCCCCEEEEEECCCCCC--CCEEEEEEEEEECCHHHHHHHHHHHHCCCCC
Q ss_conf 866995788882267787--7613599992104889999999986238300
Q gi|254780900|r 375 SDFNISLRLFSCPHQEEN--SQEFSVFMITHKVSGKLIRDAIECFNGKSDA 423 (438)
Q Consensus 375 ak~~ISIesi~Q~~~~~~--~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v 423 (438)
++.+.+|-.+.+...... -..+.+.++-+.-.....+..++.|++..+-
T Consensus 348 ~~~~~ni~~~~~~r~~~~~~~~~~~v~~~~Et~~~~h~~~l~~~l~~~G~~ 398 (403)
T PRK08526 348 KIANANIVKIDYDRFSTKLDYGDANISITLETKGKEHQEEIRKILTEKGFN 398 (403)
T ss_pred CCCCCCEEEEEEEECCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 258995799998862577887736999999949999999999999987998
No 78
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=96.95 E-value=0.0036 Score=42.25 Aligned_cols=139 Identities=19% Similarity=0.217 Sum_probs=74.0
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC-------CC---------CCC---------CC
Q ss_conf 269999825667899999999989999997399659999982685200-------27---------887---------71
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNID-------RG---------IDC---------LR 58 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~-------~~---------~~~---------~~ 58 (438)
+|||||-|||.+|+.+++++.++ .++++++|-+.....+ .+ +.. ..
T Consensus 2 tirIgINGFGRIGR~v~R~~~~~---------~~ievVaIND~~~d~~~~ayLLkyDS~hG~~~~~v~~~~~~l~i~g~~ 72 (333)
T PRK08955 2 TIKVGINGFGRIGRLALRAAWDW---------PEVEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDDIVINGKR 72 (333)
T ss_pred CEEEEEECCCHHHHHHHHHHHHC---------CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCEEEECCEE
T ss_conf 67999957887899999998528---------990899991799998999998601267898998689809969999999
Q ss_pred CHH--CCCHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCC--EEEEEE-CHHH-H--HHHH--HHHHHHHHHCCCEE
Q ss_conf 022--07888984488998999864888851135788886327--028850-4177-8--8768--99998753139669
Q gi|254780900|r 59 YEW--FDDPLIMAGEADIDVFVELIGGEDYPAYDAVRIALMRG--CHVVTA-NKAL-I--ASHG--KDLALLAQKNNAIL 128 (438)
Q Consensus 59 ~~~--~~d~~~li~~~~IDvVVEliGg~~~pA~~~i~~AL~~G--khVVTA-NKal-l--A~~g--~eL~~lA~~~gv~l 128 (438)
..+ .+|+.++--. ++|+|+|++|-.. .++-...-|++| |-+++| .|.- . ..+| ++.+.-++ +.+.=
T Consensus 73 I~~~~~~~p~~i~W~-~vDiViEcTG~f~--t~~~a~~Hl~~GakkViiSaP~k~~~~~tiV~GVN~~~~~~~~-~~iiS 148 (333)
T PRK08955 73 IRTTQNKAIADTDWS-GCDVVIEASGVMK--TKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLYDPAI-HPIVT 148 (333)
T ss_pred EEEECCCCCCCCCCC-CCCEEEECCCCCC--CHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEECCHHHCCCCC-CCEEE
T ss_conf 877414880127866-6768999167668--8899999987598579965799877740489960322147654-75787
Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCH
Q ss_conf 960564530131899987641286203433314200
Q gi|254780900|r 129 NFEAAVAGGIPIIRILKNYVEYDEINRVYGIINGTC 164 (438)
Q Consensus 129 ~~easV~ggiPii~~l~~~l~~~~i~~i~GIlnGT~ 164 (438)
.=.+|+-+=.|+++.|.+.+ ||-+|..
T Consensus 149 ~aSCTTNclAP~~kvl~~~f---------gI~~g~m 175 (333)
T PRK08955 149 AASCTTNCLAPVVKVIHEKL---------GIKHGSM 175 (333)
T ss_pred CCCHHHHHHHHHHHHHHHHC---------CEEEEEE
T ss_conf 46414213476999888635---------8416778
No 79
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=96.94 E-value=0.0032 Score=42.58 Aligned_cols=130 Identities=17% Similarity=0.201 Sum_probs=77.1
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC---CCCCCCCCCHHCCCHHHHHCCCCCCEEEEC
Q ss_conf 26999982566789999999998999999739965999998268520---027887710220788898448899899986
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI---DRGIDCLRYEWFDDPLIMAGEADIDVFVEL 80 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k---~~~~~~~~~~~~~d~~~li~~~~IDvVVEl 80 (438)
++|+||+|-|++|.-+.--+.+ ...+++.....++.+- .|...+.-.....-.+.++..+++|+|.++
T Consensus 1 k~~vAIiGsGnIGtDLm~Ki~r---------S~~le~~~~vG~dp~S~GL~rA~~lGv~~s~~Gid~ll~~~~idiVFDA 71 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLR---------SEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDA 71 (285)
T ss_pred CCEEEEECCCCHHHHHHHHHHC---------CCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEEC
T ss_conf 9369998998338999999866---------7872169998248898289999984996637688989609997889966
Q ss_pred CCCCCCCHHHHHHHHHHCCEEEE--EECH-HHHHHHHHHHHHHHHHCCCEEEEECCCCC--HHHHHHHHHHH
Q ss_conf 48888511357888863270288--5041-77887689999875313966996056453--01318999876
Q gi|254780900|r 81 IGGEDYPAYDAVRIALMRGCHVV--TANK-ALIASHGKDLALLAQKNNAILNFEAAVAG--GIPIIRILKNY 147 (438)
Q Consensus 81 iGg~~~pA~~~i~~AL~~GkhVV--TANK-allA~~g~eL~~lA~~~gv~l~~easV~g--giPii~~l~~~ 147 (438)
+.- ..|.++....-+.||.+| |.-+ ++...-.--|.+...+.|+..- |+|| -+|++..+..-
T Consensus 72 TSA--~aH~~h~~~l~~~g~~~IDLTPAaiGp~~VP~VNl~~~l~~~NvNMV---TCGGQAtiPiv~avsrv 138 (285)
T TIGR03215 72 TSA--KAHARHARLLAELGKIVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMV---TCGGQATIPIVAAISRV 138 (285)
T ss_pred CCH--HHHHHHHHHHHHCCCEEEECCCCCCCCEEECCCCHHHHCCCCCCCEE---EECCCCCCHHHHHHHHC
T ss_conf 984--67999999999759979978810159754555387895468886337---65584301899987503
No 80
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.92 E-value=0.0077 Score=39.97 Aligned_cols=67 Identities=16% Similarity=0.263 Sum_probs=51.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCC
Q ss_conf 2799992488874899999988669957888822677877613599992104889999999986238
Q gi|254780900|r 354 YFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGK 420 (438)
Q Consensus 354 yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l 420 (438)
-=|-|++.|+||.|+++-++|++++|++-.|.-.+...+.+...+++=-+.-+...++.+++.|.+.
T Consensus 15 tSlifs~~~~~GaL~~~L~~F~~~~INLt~IESRPsk~~~~eY~FfVD~e~~~~~~l~~~i~~Lr~~ 81 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRND 81 (90)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 8999993897677999999999879674788767489999608999992388757799999999985
No 81
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.91 E-value=0.0082 Score=39.76 Aligned_cols=67 Identities=16% Similarity=0.267 Sum_probs=49.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEE-EEEECCHHHHHHHHHHHHCCCC
Q ss_conf 999924888748999999886699578888226778776135999-9210488999999998623830
Q gi|254780900|r 356 IRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFM-ITHKVSGKLIRDAIECFNGKSD 422 (438)
Q Consensus 356 LRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IVi-iTh~~~e~~i~~ai~~i~~l~~ 422 (438)
|-|++.|+||.|+++-+.|++++|++.++.-.+........-+++ +.-...+..++.+++.|+....
T Consensus 4 l~f~~~~~pGsL~~~L~~f~~~~iNLtkIeSRP~~~~~~~Y~F~vd~~g~~~d~~~~~al~~l~~~~~ 71 (80)
T cd04905 4 IVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTE 71 (80)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 99998997858999999999879767999967638998449999998558798899999999998579
No 82
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=96.86 E-value=0.003 Score=42.82 Aligned_cols=59 Identities=14% Similarity=0.277 Sum_probs=45.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHH
Q ss_conf 99992488874899999988669957888822677877613599992104889999999986
Q gi|254780900|r 356 IRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECF 417 (438)
Q Consensus 356 LRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i 417 (438)
+++...|+||++++|+.+|++++++|..+.|..... .....+.+.++... .++.+++.|
T Consensus 1 i~i~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~-~~~~~~~~~v~~~~--~~~~~~~~l 59 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGD-GGEADIFIVVDGDG--DLEKLLEAL 59 (60)
T ss_pred CEECCCCCCCHHHHHHHHHHHCCCCHHEEEEEECCC-CCCEEEEEEECCCC--CHHHHHHHH
T ss_conf 933779988669999999998698953068403688-97178999953777--399998854
No 83
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.85 E-value=0.011 Score=38.91 Aligned_cols=66 Identities=12% Similarity=0.273 Sum_probs=51.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCC
Q ss_conf 9999248887489999998866995788882267787761359999210488999999998623830
Q gi|254780900|r 356 IRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSD 422 (438)
Q Consensus 356 LRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~ 422 (438)
+-|++.|+||.|+++-++|++++|+.-.|--.+.....+... +++.-.+....++++++.|+..-.
T Consensus 3 lvFslk~~~GaL~~~L~~F~~~~iNlthIESRpSk~~~~~Y~-ffvD~e~~~~~l~~~l~~Lk~~~~ 68 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFE-IFVDCECDQRRLDELVQLLKREVA 68 (74)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEE-EEEEECCCHHHHHHHHHHHHHHCE
T ss_conf 999968865679999999998697779985587878897189-999903997999999999998520
No 84
>KOG0409 consensus
Probab=96.85 E-value=0.0098 Score=39.21 Aligned_cols=169 Identities=18% Similarity=0.231 Sum_probs=109.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEEECCCC
Q ss_conf 26999982566789999999998999999739965999998268520027887710220788898448899899986488
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFVELIGG 83 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVVEliGg 83 (438)
.-|||-+|.|++|++.+..|.++ |..+ .|.+|++.+-..+.-....+.+.|.++.++. |+|+-+.+.
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~--------G~kV---tV~dr~~~k~~~f~~~Ga~v~~sPaeVae~s--Dvvitmv~~ 101 (327)
T KOG0409 35 KTRIGFIGLGNMGSAMVSNLIKA--------GYKV---TVYDRTKDKCKEFQEAGARVANSPAEVAEDS--DVVITMVPN 101 (327)
T ss_pred CCEEEEEEECCCHHHHHHHHHHC--------CCEE---EEEECCHHHHHHHHHHCHHHHCCHHHHHHHC--CEEEEECCC
T ss_conf 55135774341118999999975--------9879---9995867887899970501407979998636--889997688
Q ss_pred CCCCHHHHHH------HHHHCCEEE-EEEC--HHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-------------
Q ss_conf 8851135788------886327028-8504--17788768999987531396699605645301318-------------
Q gi|254780900|r 84 EDYPAYDAVR------IALMRGCHV-VTAN--KALIASHGKDLALLAQKNNAILNFEAAVAGGIPII------------- 141 (438)
Q Consensus 84 ~~~pA~~~i~------~AL~~GkhV-VTAN--KallA~~g~eL~~lA~~~gv~l~~easV~ggiPii------------- 141 (438)
. ..++++.. ..+..|+.. |-+. ++-+ -.||.+.++..|..+. ||-|-||.+--
T Consensus 102 ~-~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~---s~ei~~~i~~~~~~~v-DAPVSGg~~~A~~G~LtimagGde 176 (327)
T KOG0409 102 P-KDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDT---SLEIAKAISNKGGRFV-DAPVSGGVKGAEEGTLTIMAGGDE 176 (327)
T ss_pred H-HHHHHHHCCCCCCEEECCCCCCEEEECCCCCHHH---HHHHHHHHHHCCCEEE-ECCCCCCCHHHHCCEEEEEECCCH
T ss_conf 0-7668884077862352158883477624468788---9999999974798698-566667701333372899946869
Q ss_pred ---HHHHHHH--HCCCCEEEEEEECCCHHHHEEHHHC--CCCCHHHHHHHHHHCCC
Q ss_conf ---9998764--1286203433314200000000100--68778899887876176
Q gi|254780900|r 142 ---RILKNYV--EYDEINRVYGIINGTCNYILSHMNN--LGLSFQDCLEEARRQGY 190 (438)
Q Consensus 142 ---~~l~~~l--~~~~i~~i~GIlnGT~nyIL~~m~~--~g~~f~~al~~Aq~lGy 190 (438)
+-....+ .|-++.-.-++=||+.-=|-.+|.. .-..++|++.-|+++|.
T Consensus 177 ~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GL 232 (327)
T KOG0409 177 ALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGL 232 (327)
T ss_pred HHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99998899999732518983465751788999999999999999999999998089
No 85
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=96.82 E-value=0.011 Score=38.99 Aligned_cols=66 Identities=15% Similarity=0.292 Sum_probs=49.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEE-EEEECCHHHHHHHHHHHHCCC
Q ss_conf 999924888748999999886699578888226778776135999-921048899999999862383
Q gi|254780900|r 356 IRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFM-ITHKVSGKLIRDAIECFNGKS 421 (438)
Q Consensus 356 LRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IVi-iTh~~~e~~i~~ai~~i~~l~ 421 (438)
|-|++.|+||.|+++-+.|++++|++.++.-.+.........+++ +.-...+.+++++++.|+...
T Consensus 2 i~f~~~~~pGaL~~~L~~F~~~~iNlt~IeSRP~~~~~~~y~F~id~eg~~~~~~~~~~l~~l~~~~ 68 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRVT 68 (75)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 8999689787899999999988966799995774999956999999716859789999999999847
No 86
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=96.81 E-value=0.013 Score=38.37 Aligned_cols=66 Identities=14% Similarity=0.298 Sum_probs=50.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCC
Q ss_conf 9999248887489999998866995788882267787761359999210488999999998623830
Q gi|254780900|r 356 IRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSD 422 (438)
Q Consensus 356 LRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~ 422 (438)
+-|++.|+||.|+++-+.|++++|++-.+.-.+...+.+... +++--.....+++++++.|++...
T Consensus 3 i~fs~~~~~GaL~~~L~~F~~~~iNlt~IESRPs~~~~~~y~-FfvD~eg~~~~i~~al~~Lk~~~~ 68 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYE-FFVDCEVDRGDLDQLISSLRRVVA 68 (74)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEE-EEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 999958986489999999998798678998333899997599-999960898999999999997478
No 87
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=96.79 E-value=0.0063 Score=40.58 Aligned_cols=133 Identities=21% Similarity=0.328 Sum_probs=68.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC------CCC-----CC----C---------CCC
Q ss_conf 26999982566789999999998999999739965999998268520------027-----88----7---------710
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI------DRG-----ID----C---------LRY 59 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k------~~~-----~~----~---------~~~ 59 (438)
+|||||-|||.+|+.+++.+.++ .++++++|-+..... +.+ ++ . ...
T Consensus 2 ~irIgINGFGRIGR~v~R~~~~~---------~~i~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~v~g~~I 72 (343)
T PRK07729 2 KVRVAINGFGRIGRMVFRQAIKE---------SAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVNGKKI 72 (343)
T ss_pred CEEEEEECCCHHHHHHHHHHHHC---------CCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEECCCEEEECCEEE
T ss_conf 67999978886899999999668---------998899984899989999975852778988997897199799999750
Q ss_pred HH--CCCHHHH-HCCCCCCEEEECCCCCCCCHHHHHHHHHHCC--EEEEEEC-HH--HHHHHH--HHHHHHHHHCCCEEE
Q ss_conf 22--0788898-4488998999864888851135788886327--0288504-17--788768--999987531396699
Q gi|254780900|r 60 EW--FDDPLIM-AGEADIDVFVELIGGEDYPAYDAVRIALMRG--CHVVTAN-KA--LIASHG--KDLALLAQKNNAILN 129 (438)
Q Consensus 60 ~~--~~d~~~l-i~~~~IDvVVEliGg~~~pA~~~i~~AL~~G--khVVTAN-Ka--llA~~g--~eL~~lA~~~gv~l~ 129 (438)
.+ ..|+.++ ..+-++|+|+|++|-.. .++-...-|++| |=+++|- |. ..-..| ++.+.. +++.+.=.
T Consensus 73 ~~~~~~dp~~i~W~~~gvD~ViE~TG~f~--~~e~a~~Hl~~GakkViiSAP~k~~d~tiV~GVN~~~~~~-~~~~IiSn 149 (343)
T PRK07729 73 RLLNNRDPKELPWTDLGIDIVIEATGKFN--SKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDI-EKHTVISN 149 (343)
T ss_pred CCCCCCCHHHCCCCCCCCCEEEECCCCCC--CHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECCHHHCCC-CCCCEEEC
T ss_conf 12366996778841038849997475567--8899998885498679988898999745997235554576-54838973
Q ss_pred EECCCCCHHHHHHHHHHHH
Q ss_conf 6056453013189998764
Q gi|254780900|r 130 FEAAVAGGIPIIRILKNYV 148 (438)
Q Consensus 130 ~easV~ggiPii~~l~~~l 148 (438)
=.+|+-+=.|+++.|.+.+
T Consensus 150 ASCTTNclAPv~kvL~~~f 168 (343)
T PRK07729 150 ASCTTNCLAPVVKVLDEQF 168 (343)
T ss_pred CCHHHHHHHHHHHHHHHHC
T ss_conf 8479888999999998653
No 88
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=96.78 E-value=0.0068 Score=40.32 Aligned_cols=145 Identities=17% Similarity=0.228 Sum_probs=75.9
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC-CC-----CC---------CCCC---------CCC
Q ss_conf 269999825667899999999989999997399659999982685-20-----02---------7887---------710
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDK-NI-----DR---------GIDC---------LRY 59 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~-~k-----~~---------~~~~---------~~~ 59 (438)
+|||||-|||.+|+.+++.+.++ -...++++++|-+... +. +. .+.. ...
T Consensus 1 tikIgINGFGRIGR~v~R~~~e~------~~~~~i~vVaINd~~~~~~~ayLLkyDSvhG~~~~~v~~~~~~l~v~~~~I 74 (336)
T PRK13535 1 TIRVAINGFGRIGRNVLRALYES------GRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAI 74 (336)
T ss_pred CEEEEEECCCHHHHHHHHHHHHC------CCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEEECCEEEECCEEE
T ss_conf 96999978888999999999866------889986999978899989999986422678889997897089799999899
Q ss_pred HH--CCCHHHHH-CCCCCCEEEECCCCCCCCHHHHHHHHHHC--CEEEEEEC-HH---HHHHHH--HHHHHHHHHCCCEE
Q ss_conf 22--07888984-48899899986488885113578888632--70288504-17---788768--99998753139669
Q gi|254780900|r 60 EW--FDDPLIMA-GEADIDVFVELIGGEDYPAYDAVRIALMR--GCHVVTAN-KA---LIASHG--KDLALLAQKNNAIL 128 (438)
Q Consensus 60 ~~--~~d~~~li-~~~~IDvVVEliGg~~~pA~~~i~~AL~~--GkhVVTAN-Ka---llA~~g--~eL~~lA~~~gv~l 128 (438)
.+ ..|+.++- .+-++|+|+|++|--.. .+-...-|++ +|=+++|- |. +.-..| ++.+. .++.+-=
T Consensus 75 ~~~~~~dp~~ipW~~~~vD~ViE~TG~f~~--~~~a~~Hl~~GakkViiSaP~~~~~d~tiV~GVN~~~~~--~~~~IiS 150 (336)
T PRK13535 75 RLLHERDLASLPWRELGVDVVLDCTGVYGS--REDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLR--AEHRIVS 150 (336)
T ss_pred EEEECCCHHHCCCCCCCCCEEEEECCCCCC--HHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCHHHCC--CCCEEEE
T ss_conf 999558943398311587599970431167--899999987598568982588766686389615756748--6653897
Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHH
Q ss_conf 960564530131899987641286203433314200000
Q gi|254780900|r 129 NFEAAVAGGIPIIRILKNYVEYDEINRVYGIINGTCNYI 167 (438)
Q Consensus 129 ~~easV~ggiPii~~l~~~l~~~~i~~i~GIlnGT~nyI 167 (438)
.=.+|+-+=.|+++.|.+.+ ||-+|...=|
T Consensus 151 nASCTTNclAPv~kvl~~~f---------GI~~g~mTTI 180 (336)
T PRK13535 151 NASCTTNCIIPVIKLLDDAF---------GIESGTVTTI 180 (336)
T ss_pred CCCCCCCEEEEHHHHHHHCC---------CEEEEEEEEE
T ss_conf 57533241401255366336---------7577578877
No 89
>PRK11899 prephenate dehydratase; Provisional
Probab=96.73 E-value=0.015 Score=37.98 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=50.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEE-EEEECCHHHHHHHHHHHHCCCCCCC
Q ss_conf 999924888748999999886699578888226778776135999-9210488999999998623830004
Q gi|254780900|r 356 IRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFM-ITHKVSGKLIRDAIECFNGKSDAIR 425 (438)
Q Consensus 356 LRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IVi-iTh~~~e~~i~~ai~~i~~l~~v~~ 425 (438)
|-|.+.|+||.|.++-+.|++++|++-++.-.+...+-...-++| +.-...+..+..+++.|+....-.+
T Consensus 197 l~~~~~d~pGaL~~vL~~Fa~~~INLtkIeSRP~~~~~~~Y~F~iD~egh~~d~~~~~al~~l~~~~~~~k 267 (284)
T PRK11899 197 FVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRFFSEEVR 267 (284)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 99973898619999999999879875688501259998439999996068798999999999998569679
No 90
>PRK06545 prephenate dehydrogenase; Validated
Probab=96.73 E-value=0.0044 Score=41.66 Aligned_cols=332 Identities=15% Similarity=0.152 Sum_probs=142.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC-CCCCCCCC-CCHHCCCHHHHHCCCCCCEEEECCCC
Q ss_conf 99998256678999999999899999973996599999826852-00278877-10220788898448899899986488
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKN-IDRGIDCL-RYEWFDDPLIMAGEADIDVFVELIGG 83 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~-k~~~~~~~-~~~~~~d~~~li~~~~IDvVVEliGg 83 (438)
+|.|+|+|-+|.+++.-|.+ .+....+.++ +++.. ..+..... -....+++.+.+.+ .|+||=++.
T Consensus 2 ~V~IiGlGLIGgSlalalk~--------~g~~~~i~~~-d~~~~~l~~A~~~g~id~~~~~~~~~~~~--~DlVvlatP- 69 (357)
T PRK06545 2 TVLIVGLGLIGGSLALAIKA--------AGPDVFIIGY-DPSGAQLARALGFGVIDELAEDLARAAAE--ADLIVLAVP- 69 (357)
T ss_pred EEEEEEECHHHHHHHHHHHH--------CCCCEEEEEE-CCCHHHHHHHHHCCCCCEECCCHHHHCCC--CCEEEECCC-
T ss_conf 79999778789999999985--------4997699996-69999999998689977304887671567--999999499-
Q ss_pred CCCCHHHHHHHHHHCCE-EEEE---ECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 88511357888863270-2885---0417788768999987531396699605645301318999876412862034333
Q gi|254780900|r 84 EDYPAYDAVRIALMRGC-HVVT---ANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILKNYVEYDEINRVYGI 159 (438)
Q Consensus 84 ~~~pA~~~i~~AL~~Gk-hVVT---ANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~~~l~~~~i~~i~GI 159 (438)
.. ...+++.+....+. .+|| .-|..+.....++ .. .+..| -||=|+--.=+.+....+- ..
T Consensus 70 v~-~~~~~l~~l~~l~~~~ivTDVgSvK~~I~~~~~~~---~~-~~~~F------VggHPMAGsEksG~~aA~~----~L 134 (357)
T PRK06545 70 VD-ATAALLAELADLAPGVIVTDVGSVKGAILAEAEAL---GL-KDVRF------VGGHPMAGSHKSGVLAAKA----HL 134 (357)
T ss_pred HH-HHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHH---CC-CCCCE------ECCCCCCCCCCCCHHHCCH----HH
T ss_conf 99-99999999872389978997510079999999983---68-88864------5679826477747122645----68
Q ss_pred ECCCHHHHEEHHHCC-CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHH
Q ss_conf 142000000001006-8778899887876176156532232117899999999999818855531000122320476740
Q gi|254780900|r 160 INGTCNYILSHMNNL-GLSFQDCLEEARRQGYAEGDATFDINGVDSSHKIAILSAIAFGIDTSVEGVYCEGISNITLEDI 238 (438)
Q Consensus 160 lnGT~nyIL~~m~~~-g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa~~~~g~~~~~~~v~~~gI~~i~~~di 238 (438)
|.| -+||||-.... ...++.+-+-.+.+| |.+- ..|-+=.|.+ +|... ..|-=.....+.-+.+-.+..+
T Consensus 135 F~~-a~~iltP~~~t~~~~~~~v~~l~~~lG-a~~~-~m~~~eHD~~-----vA~~S-HLPHllA~~L~~~~~~~~~~~~ 205 (357)
T PRK06545 135 FEN-APWVLTPDDHVDPEAVAELKDLLSGTG-AKFV-VMDAEEHDRA-----TALVS-HLPHILASSLAAVLAGEHPLAL 205 (357)
T ss_pred HCC-CEEEEECCCCCCHHHHHHHHHHHHHCC-CEEE-ECCHHHHHHH-----HHHHH-HHHHHHHHHHHHHHHCCCHHHH
T ss_conf 669-819996389999999999999999759-9899-8188998899-----99871-1199999999999851888899
Q ss_pred HHHHHCCCEEEEEEEEEECCCCCEEEEEEEE------EECCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCHHHH
Q ss_conf 3478719858741013313678356999986------4167730003665416898311310058972687666102068
Q gi|254780900|r 239 RGAADFGYCIKFLAMARRKGKGIIRYVYPVL------LKYDSVMALVDGITNAVVIETNGLGKLTMTGPGAGGSATASAV 312 (438)
Q Consensus 239 ~~a~~~g~~ikli~~~~~~~~~i~~~V~P~l------i~~~~~la~v~g~~Nai~i~~~~~g~~~~~G~GAG~~~TAsaV 312 (438)
++| |-.-++-.++ +.-.|.+ -+++..+..++.-..-+ +.+-+.+=.| + +.=
T Consensus 206 ~la----------ggGfRD~TRI-A~sdP~mW~dI~~~N~~~il~~L~~~~~~L----~~~~~~l~~~-----d---~~~ 262 (357)
T PRK06545 206 RLA----------AGGFRDITRI-ASSDPDMWRDILLSNAEPLLDALDEWIEEL----DRARDALESG-----D---AGS 262 (357)
T ss_pred HHH----------CCCCHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHC-----C---HHH
T ss_conf 764----------1450100246-328837999999983999999999999999----9999999808-----9---999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEE-CCCCC
Q ss_conf 89999997417777655666678310023443885344653279999248887489999998866995788882-26778
Q gi|254780900|r 313 LGDICSIAKTNTQKSVSWALGKESSSFSVIHCDGVYEEEKEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSC-PHQEE 391 (438)
Q Consensus 313 ~sDli~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q-~~~~~ 391 (438)
+.++++-+|..+.. ++-........-|.|.+.+.|+||++++|++.+++.+|||+.+.- +.+.+
T Consensus 263 l~~~~~~a~~~R~~---------------ip~~~~g~~~~~~~l~v~i~D~pG~la~l~~~l~~~~ini~di~i~h~~re 327 (357)
T PRK06545 263 IAEFFDAGKAGRDR---------------LPGKHGGAIPSFYDLYVDVPDEPGVIAKVTRILAEEGISIENLRIELETRE 327 (357)
T ss_pred HHHHHHHHHHHHHH---------------CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEECCEEEECCCC
T ss_conf 99999999999983---------------887668999861899987899998799999999986987267778764787
Q ss_pred CCCEEEEEEEEEECCHHHHHHH
Q ss_conf 7761359999210488999999
Q gi|254780900|r 392 NSQEFSVFMITHKVSGKLIRDA 413 (438)
Q Consensus 392 ~~~~~~IViiTh~~~e~~i~~a 413 (438)
. ..=+..++-+..+......
T Consensus 328 ~--~ggv~~~~~~~~~~~~~a~ 347 (357)
T PRK06545 328 D--IGGVLRISFPNADDRERAA 347 (357)
T ss_pred C--CCCEEEEECCCHHHHHHHH
T ss_conf 6--5778999669878999999
No 91
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.70 E-value=0.0067 Score=40.36 Aligned_cols=60 Identities=8% Similarity=0.211 Sum_probs=42.6
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEE--EE-ECCHHHHHHHHHHHHC
Q ss_conf 99248887489999998866995788882267787761359999--21-0488999999998623
Q gi|254780900|r 358 LTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMI--TH-KVSGKLIRDAIECFNG 419 (438)
Q Consensus 358 l~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IVii--Th-~~~e~~i~~ai~~i~~ 419 (438)
+.=.|+||+.+++|+.|++++++|..+.|.-.++ .+.=++++ +. ..+-..+++.++++.+
T Consensus 6 viG~Dr~GIVa~vt~~Lae~~iNI~DisQti~~g--~F~M~m~vd~~~~~~~~~~l~~~L~~~~~ 68 (88)
T cd04872 6 VVGKDRVGIVAGVSTKLAELNVNILDISQTIMDG--YFTMIMIVDISESNLDFAELQEELEELGK 68 (88)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCEEEEEEEEECC--EEEEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9779988789999999998699889535026757--78999999945767999999999999998
No 92
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.70 E-value=0.0076 Score=40.01 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=71.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCC-CCCEEEECCCC
Q ss_conf 69999825667899999999989999997399659999982685200278877102207888984488-99899986488
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEA-DIDVFVELIGG 83 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~-~IDvVVEliGg 83 (438)
||||++|+|++|+..+..|.++ |. ++ .+.+|+.++...+........+++.++++.- ..++|+=+...
T Consensus 1 MkIGfIGLG~MG~~mA~nL~~~--------G~--~V-~v~d~~~~~~~~~~~~g~~~~~s~~e~~~~l~~~~vI~~~vp~ 69 (298)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED--------GH--EV-VGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRAIWVMVPA 69 (298)
T ss_pred CEEEEECHHHHHHHHHHHHHHC--------CC--EE-EEECCCHHHHHHHHHCCCEECCCHHHHHHHCCCCCEEEEECCC
T ss_conf 9799983467689999999977--------99--48-9984998999999986995428999999737899889997689
Q ss_pred CCCCHHHHH---HHHHHCCEEEEE-ECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf 885113578---888632702885-0417788768999987531396699605645301
Q gi|254780900|r 84 EDYPAYDAV---RIALMRGCHVVT-ANKALIASHGKDLALLAQKNNAILNFEAAVAGGI 138 (438)
Q Consensus 84 ~~~pA~~~i---~~AL~~GkhVVT-ANKallA~~g~eL~~lA~~~gv~l~~easV~ggi 138 (438)
. .+-.+.+ ...|+.|.-||- .|-. ...-.++.+..+++|+.| ..|-|-||.
T Consensus 70 g-~~v~~vi~~l~~~L~~g~iiID~sts~--~~~t~~~~~~l~~~gi~f-lDapVSGG~ 124 (298)
T PRK12490 70 G-EVTESVLKDLYPLLSPGDIVIDGGNSR--YKDDLRRAEELAERGIHY-VDCGTSGGV 124 (298)
T ss_pred C-HHHHHHHHHHHHHCCCCCEEECCCCCC--HHHHHHHHHHHHHCCCCE-ECCCCCCCH
T ss_conf 4-559999996885269998885288789--999999999999759903-055357887
No 93
>PRK06382 threonine dehydratase; Provisional
Probab=96.70 E-value=0.0093 Score=39.37 Aligned_cols=287 Identities=13% Similarity=0.060 Sum_probs=142.4
Q ss_pred HCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHEEHHHCCCC
Q ss_conf 32702885041778876899998753139669960564530131899987641286203433314200000000100687
Q gi|254780900|r 97 MRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILKNYVEYDEINRVYGIINGTCNYILSHMNNLGL 176 (438)
Q Consensus 97 ~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~~~g~ 176 (438)
+..+.||||.- -.|+.-+.-.|+..|+....= +--..|-.+.-+----|.+|. | .|.
T Consensus 65 ~~~~GVVaaSa---GNHaqgvA~aa~~lgi~a~Iv--mP~~tp~~Kv~~~r~~GA~Vi-------------l-----~g~ 121 (400)
T PRK06382 65 ELRNGVITASA---GNHAQGVAYAASINGIDAKIV--MPEYTIPQKVNAVEAYGAHVI-------------L-----TGR 121 (400)
T ss_pred HHCCCEEEECC---CCHHHHHHHHHHHHCCCEEEE--ECCCCCHHHHHHHHHCCCEEE-------------E-----ECC
T ss_conf 76287799589---946999999999839988999--178899999999985597899-------------9-----777
Q ss_pred CHH----HHHHHHHHCCCCCCCCCCCCC---HHHHHHHHHHHHHHHHCCCCCCCCCH--HHHHHHCCHHHHHHHHHCCCE
Q ss_conf 788----998878761761565322321---17899999999999818855531000--122320476740347871985
Q gi|254780900|r 177 SFQ----DCLEEARRQGYAEGDATFDIN---GVDSSHKIAILSAIAFGIDTSVEGVY--CEGISNITLEDIRGAADFGYC 247 (438)
Q Consensus 177 ~f~----~al~~Aq~lGyaE~DP~~Di~---G~Daa~Kl~ILa~~~~g~~~~~~~v~--~~gI~~i~~~di~~a~~~g~~ 247 (438)
+|+ .|.+-|++.|+.=-+|-+|.+ |.-+. =+=|+ ..-+++|.+. +-|=--++- --.+++.+.-.
T Consensus 122 ~~dea~~~A~~~a~e~g~~~Ihpfdd~~vIaGqGTi-glEIl-----eq~pd~D~vvvpvGGGGLisG-ia~a~K~~~P~ 194 (400)
T PRK06382 122 DYDEAHRYADKIAMDENRTFIEAFNDRWVISGQGTI-GLEIM-----EDLPDLDQIIVPVGGGGLISG-IALAAKHINPN 194 (400)
T ss_pred CCHHHHHHHHHHHHHHCCEECCCCCCHHHHHCCHHH-HHHHH-----HHCCCCCEEEEECCCCHHHHH-HHHHHHHHCCC
T ss_conf 646999999999998397625888984687073059-99999-----866899989993687158899-99999985999
Q ss_pred EEEEEEEE---------EC-------------CCCCEEEEEEEEEECCCCCCCCC-CCCCEEEEEEEE--------E--E
Q ss_conf 87410133---------13-------------67835699998641677300036-654168983113--------1--0
Q gi|254780900|r 248 IKFLAMAR---------RK-------------GKGIIRYVYPVLLKYDSVMALVD-GITNAVVIETNG--------L--G 294 (438)
Q Consensus 248 ikli~~~~---------~~-------------~~~i~~~V~P~li~~~~~la~v~-g~~Nai~i~~~~--------~--g 294 (438)
+|.+|+-- .. .+++..+ .|.+.+|.-+. -++..+.+.-+. + -
T Consensus 195 ikViGVEpe~a~~~~~sl~~g~~v~~~~~~tiaDGiav~-----~~G~~tf~i~~~~vD~vv~V~e~eI~~A~~~l~e~~ 269 (400)
T PRK06382 195 VKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVK-----YPGDLTFDIAKNYVDDIVTVTEESVSKAIYKLFERE 269 (400)
T ss_pred CEEEEECCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCC-----CCCCCCHHHHHHCCCCEEEECHHHHHHHHHHHHHHC
T ss_conf 759997968987899998779962058877364240356-----555115999984089779989999999999999963
Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCCHHHCCCCEEEEEEECCCCCHHHHHHH
Q ss_conf 05897268766610206889999997417777655666678310--0234438853446532799992488874899999
Q gi|254780900|r 295 KLTMTGPGAGGSATASAVLGDICSIAKTNTQKSVSWALGKESSS--FSVIHCDGVYEEEKEYFIRLTIRNFEGILDKITS 372 (438)
Q Consensus 295 ~~~~~G~GAG~~~TAsaV~sDli~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~yYLRl~v~DkpGVLa~It~ 372 (438)
.++..|.|| -+- +|+++.-.++ ++.+-.. .--|-+.+. +...-..........+++++.+.|+||.|+++++
T Consensus 270 k~vvEpaGA--~~l-AAll~~~~~~-~gk~Vv~--vlsGGNiD~~~l~~ii~r~l~~~gr~~~~~v~i~d~pG~L~~~~~ 343 (400)
T PRK06382 270 KIVAEPSGA--VGL-AAIMEGKVDV-KGKKVAI--VVSGGNINPLLMSKIIYKELENLGQLVRIECNIPDRPGNLYRIAN 343 (400)
T ss_pred CEEEECHHH--HHH-HHHHHCCHHH-CCCEEEE--EECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH
T ss_conf 958826799--999-9998490653-7984999--963788797899999999888639979999986889977999999
Q ss_pred HHHHCCCCEEEEEECCCCC--CCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCC
Q ss_conf 9886699578888226778--776135999921048899999999862383000
Q gi|254780900|r 373 QMSDFNISLRLFSCPHQEE--NSQEFSVFMITHKVSGKLIRDAIECFNGKSDAI 424 (438)
Q Consensus 373 ilak~~ISIesi~Q~~~~~--~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~ 424 (438)
++++++.+|-.+.+..... .-+.+++.++-+.-....++..++.|+...+-.
T Consensus 344 ~i~~~~~ni~~i~~~r~~~~~~~~~~~v~~~iEt~~~~h~~~i~~~l~~~G~~~ 397 (400)
T PRK06382 344 AIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALREMGYKF 397 (400)
T ss_pred HHHCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCEE
T ss_conf 970689957999987602557876268999998099999999999999878968
No 94
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=96.64 E-value=0.009 Score=39.48 Aligned_cols=39 Identities=3% Similarity=0.228 Sum_probs=33.4
Q ss_pred HCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 446532799992488874899999988669957888822
Q gi|254780900|r 349 EEEKEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCP 387 (438)
Q Consensus 349 ~~~~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~ 387 (438)
.....|++++...|+||++.+||+.|++++|+|+.+..+
T Consensus 91 ~~~~~~~v~v~g~D~PGIV~~vt~~la~~~InI~~L~T~ 129 (183)
T PRK11589 91 AMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSR 129 (183)
T ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHEEE
T ss_conf 778159999997898988999999999869987652221
No 95
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.63 E-value=0.0052 Score=41.17 Aligned_cols=92 Identities=17% Similarity=0.161 Sum_probs=55.5
Q ss_pred CEEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCC-HHCCCHHHHHCCCCCCEEEECC
Q ss_conf 26999982-566789999999998999999739965999998268520027887710-2207888984488998999864
Q gi|254780900|r 4 VLKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRY-EWFDDPLIMAGEADIDVFVELI 81 (438)
Q Consensus 4 ~ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~-~~~~d~~~li~~~~IDvVVEli 81 (438)
|+||||+| .|.||+.++++|.++.- ...++..++.++.. .+....... ....+... ..-.++|+++=+.
T Consensus 2 m~kVaIvGATG~vG~eli~lL~~~~~-------p~~~i~~~aS~~s~-G~~~~~~~~~~~~~~~~~-~~~~~~Di~f~a~ 72 (348)
T PRK06598 2 MYNVGVVGATGMVGSVLLQMLEERDF-------PVIEPVFFASSRSG-GKAPSFGGKTLLVDALDI-EDLKGLDIALFSA 72 (348)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-------CCCEEEEEECCCCC-CCCCEECCCEEEEEECCH-HHHHCCCEEEECC
T ss_conf 84799989845999999999986799-------96249999875668-987506895547862785-5760799999868
Q ss_pred CCCCCCHHHHHHHHHHCCEEEEEEC
Q ss_conf 8888511357888863270288504
Q gi|254780900|r 82 GGEDYPAYDAVRIALMRGCHVVTAN 106 (438)
Q Consensus 82 Gg~~~pA~~~i~~AL~~GkhVVTAN 106 (438)
+ . ..+.+++..+.++|..||...
T Consensus 73 ~-~-~~s~~~~~~~~~~g~~VIDlS 95 (348)
T PRK06598 73 G-G-DYSKEVAPKLRAAGGVVIDNA 95 (348)
T ss_pred C-C-HHHHHHHHHHHHCCCEEEECC
T ss_conf 8-2-356888899975898999886
No 96
>PRK00194 hypothetical protein; Validated
Probab=96.60 E-value=0.008 Score=39.84 Aligned_cols=61 Identities=8% Similarity=0.172 Sum_probs=42.4
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEE---EECCHHHHHHHHHHHHC
Q ss_conf 9992488874899999988669957888822677877613599992---10488999999998623
Q gi|254780900|r 357 RLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMIT---HKVSGKLIRDAIECFNG 419 (438)
Q Consensus 357 Rl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiT---h~~~e~~i~~ai~~i~~ 419 (438)
-..=.|+||+.+++|+.|++++++|..+.|.-.+ +.+.-+.++- ..++-..+++.++.+.+
T Consensus 7 TV~G~DrpGIVa~Vt~~La~~~~NI~DisQti~~--g~F~M~m~vd~~~~~~~~~~l~~~L~~~~~ 70 (90)
T PRK00194 7 TVIGKDRVGIVAGVSTVLAELNVNILDISQTIMD--GYFTMIMLVDISKSDKDFAALQEELEELGK 70 (90)
T ss_pred EEECCCCCCHHHHHHHHHHHCCCCEEECCCCEEC--CEEEEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9987998878999999999869998955112105--746899999836767999999999999998
No 97
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=96.60 E-value=0.015 Score=37.97 Aligned_cols=75 Identities=13% Similarity=0.129 Sum_probs=65.6
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 6532799992488874899999988669957888822677877613599992104889999999986238300047
Q gi|254780900|r 351 EKEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRY 426 (438)
Q Consensus 351 ~~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~ 426 (438)
...|-|-|.++|+.|.||++-...|+..+||=.+.|.-+-++...+++-|-|. .-+..+++.+++|.+++.|.+.
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~s-sm~~~V~~ii~kl~k~e~V~kV 144 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTS-SMEKDVDKIIEKLRKVEGVEKV 144 (150)
T ss_pred CEEEEEEEEEHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEEEECH-HHHHHHHHHHHHHHCCCCEEEE
T ss_conf 25999999971333159999999997278479986044437642589999713-3242299999998521554689
No 98
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=96.59 E-value=0.035 Score=35.31 Aligned_cols=80 Identities=11% Similarity=0.132 Sum_probs=56.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEE-EEEECCHHHHHHHHHHHHCCCCCCCCCEEEECC
Q ss_conf 7999924888748999999886699578888226778776135999-921048899999999862383000473576626
Q gi|254780900|r 355 FIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFM-ITHKVSGKLIRDAIECFNGKSDAIRYSCVICIE 433 (438)
Q Consensus 355 YLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IVi-iTh~~~e~~i~~ai~~i~~l~~v~~~~~~IRIE 433 (438)
-|-|.+.|+||.|.++-+.|++++|++-++.-.+.....+..-+++ +.-...+..+..+|+.|+......+..=..+-|
T Consensus 299 sl~~~~~~~pGaL~~~L~~Fa~~~INLtkIeSRP~~~~~~~Y~FfvD~eGh~~d~~v~~aL~~l~~~~~~~kiLGSYP~~ 378 (386)
T PRK10622 299 TLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDIQANLESAEMQKALKELGEITRSMKVLGCYPSE 378 (386)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 89996699987799999999987978657863207999964799999727879999999999999865976997317899
Q ss_pred C
Q ss_conf 7
Q gi|254780900|r 434 N 434 (438)
Q Consensus 434 ~ 434 (438)
+
T Consensus 379 ~ 379 (386)
T PRK10622 379 N 379 (386)
T ss_pred C
T ss_conf 8
No 99
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=96.59 E-value=0.0084 Score=39.70 Aligned_cols=59 Identities=14% Similarity=0.235 Sum_probs=46.3
Q ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCC
Q ss_conf 9248887489999998866995788882267787761359999210488999999998623830
Q gi|254780900|r 359 TIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSD 422 (438)
Q Consensus 359 ~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~ 422 (438)
.+.|+||+.++|-+.||+++|+++-|.|-...+ +... +|..+++.++..+++.++++..
T Consensus 8 gvpd~PG~aa~iF~~La~~~InVDmIvQ~~~~~--~~~d---isFTv~~~dl~~a~~vl~~~~~ 66 (75)
T cd04913 8 GVPDKPGVAAKIFGALAEANINVDMIVQNVSRD--GTTD---ISFTVPKSDLKKALAVLEKLKK 66 (75)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC--CCEE---EEEEECHHHHHHHHHHHHHHHH
T ss_conf 899999669999999998598479998616789--9458---9999049999999999999998
No 100
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.54 E-value=0.009 Score=39.49 Aligned_cols=313 Identities=17% Similarity=0.148 Sum_probs=151.7
Q ss_pred CEEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE--CCCCCC-CCCCCCCCHHCCCHHHHHCCCCCCEEEE
Q ss_conf 26999982-5667899999999989999997399659999982--685200-2788771022078889844889989998
Q gi|254780900|r 4 VLKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISA--RDKNID-RGIDCLRYEWFDDPLIMAGEADIDVFVE 79 (438)
Q Consensus 4 ~ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~--r~~~k~-~~~~~~~~~~~~d~~~li~~~~IDvVVE 79 (438)
++|||++| .|.||+.++++|.+. ...+....+.. |+..++ ..+.-.....-++..+...-+++|+++=
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~--------~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~ 72 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEER--------HFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFF 72 (334)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHC--------CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 918999942355899999998753--------998405788852311577160106750357621134100124999999
Q ss_pred CCCCCCCCHHHHHHHHHHCCEEEEEECHH-------HHH---HHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 64888851135788886327028850417-------788---76899998753139-66996056453013189998764
Q gi|254780900|r 80 LIGGEDYPAYDAVRIALMRGCHVVTANKA-------LIA---SHGKDLALLAQKNN-AILNFEAAVAGGIPIIRILKNYV 148 (438)
Q Consensus 80 liGg~~~pA~~~i~~AL~~GkhVVTANKa-------llA---~~g~eL~~lA~~~g-v~l~~easV~ggiPii~~l~~~l 148 (438)
+-|+. .+.++..++-++|+-|+....+ |+. ...+.|.+.-+ +| ..-.=-+|+..-++.++.|.+..
T Consensus 73 ~ag~~--~s~~~~p~~~~~G~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~-rg~IianpNCst~~l~~aL~PL~~~~ 149 (334)
T COG0136 73 AAGGS--VSKEVEPKAAEAGCVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQK-RGFIIANPNCSTIQLVLALKPLHDAF 149 (334)
T ss_pred ECCHH--HHHHHHHHHHHCCCEEEECCCCCCCCCCCCEECCCCCHHHHHHHHH-CCCEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 17668--7899999999769889968731115899877658869899974541-79789889718999999889887513
Q ss_pred HCCCCEEEEEEECCCHHHHEEHHHCCCC-CHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 1286203433314200000000100687-78899887876-176156532232117899999999999818855531000
Q gi|254780900|r 149 EYDEINRVYGIINGTCNYILSHMNNLGL-SFQDCLEEARR-QGYAEGDATFDINGVDSSHKIAILSAIAFGIDTSVEGVY 226 (438)
Q Consensus 149 ~~~~i~~i~GIlnGT~nyIL~~m~~~g~-~f~~al~~Aq~-lGyaE~DP~~Di~G~Daa~Kl~ILa~~~~g~~~~~~~v~ 226 (438)
.|.++.= -| | ---+-.|. ...+.+.+-.+ +--.+.+|. =..+||+.-+..+.+.
T Consensus 150 ---~i~~v~V---sT--y--QAvSGAG~~~~~el~~q~~~~~~~~~i~~~--------------~~~iAfNviP~I~~~~ 205 (334)
T COG0136 150 ---GIKRVVV---ST--Y--QAVSGAGAEGGVELAGQTDALLNGIPILPI--------------GYPLAFNVIPHIDGFL 205 (334)
T ss_pred ---CCEEEEE---EE--E--EHHHHCCCCCHHHHHHHHHHHCCCCCCCCC--------------CCCCCCCCCCCCCCCC
T ss_conf ---8108999---97--5--011226810156689887431367655665--------------6643331013577645
Q ss_pred HHHHHHCCHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCC
Q ss_conf 12232047674034787198587410133136783569999864167730003665416898311310058972687666
Q gi|254780900|r 227 CEGISNITLEDIRGAADFGYCIKFLAMARRKGKGIIRYVYPVLLKYDSVMALVDGITNAVVIETNGLGKLTMTGPGAGGS 306 (438)
Q Consensus 227 ~~gI~~i~~~di~~a~~~g~~ikli~~~~~~~~~i~~~V~P~li~~~~~la~v~g~~Nai~i~~~~~g~~~~~G~GAG~~ 306 (438)
-.| -+.|..+...| +-|.++. .+-.+.+...-..+ ..|-.-+|.++.+. .
T Consensus 206 ~ng---~t~EE~K~~~E---t~KIlg~---~~~~VsatcvRVPV--------~~GHse~v~ve~~~-------------~ 255 (334)
T COG0136 206 DNG---YTKEEWKIEAE---TRKILGD---PDIKVSATCVRVPV--------FYGHSEAVTVEFKK-------------D 255 (334)
T ss_pred CCC---CCHHHHHHHHH---HHHHHCC---CCCCEEEEEEECCE--------ECCCCEEEEEEECC-------------C
T ss_conf 577---51899998899---9987188---98825789997241--------61520678998569-------------8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEE-EEEEECCCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf 1020688999999741777765566667831002344388534465327-999924888748999999886699578888
Q gi|254780900|r 307 ATASAVLGDICSIAKTNTQKSVSWALGKESSSFSVIHCDGVYEEEKEYF-IRLTIRNFEGILDKITSQMSDFNISLRLFS 385 (438)
Q Consensus 307 ~TAsaV~sDli~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yY-LRl~v~DkpGVLa~It~ilak~~ISIesi~ 385 (438)
++...+...++.-+-.. ...+..+ -|+ -|+. ..| +..+++-+++
T Consensus 256 ~~~~e~~~~~l~~ap~v-------------------~v~~~~~---~~P~~~~d---~~g----------~~~v~VGRiR 300 (334)
T COG0136 256 VDPEEIREELLPSAPGV-------------------VVVDNPE---DRPQTPLD---ATG----------GDEVSVGRIR 300 (334)
T ss_pred CCHHHHHHHHHCCCCCC-------------------EEEECCC---CCCCCHHH---HCC----------CCCEEEEEEE
T ss_conf 99899999975318996-------------------8986776---68658366---348----------9855776766
Q ss_pred ECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHH
Q ss_conf 226778776135999921048899999999862
Q gi|254780900|r 386 CPHQEENSQEFSVFMITHKVSGKLIRDAIECFN 418 (438)
Q Consensus 386 Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~ 418 (438)
+..... +....+.+-|..-..---+++...+
T Consensus 301 ~d~~~~--~~l~~~~v~dNl~~GAA~~av~iaE 331 (334)
T COG0136 301 KDLSGP--EGLKLWVVGDNLRKGAALNAVLIAE 331 (334)
T ss_pred ECCCCC--CCEEEEEEECHHHHHHHHHHHHHHH
T ss_conf 347888--7479999860113511889999988
No 101
>PRK08198 threonine dehydratase; Provisional
Probab=96.54 E-value=0.0093 Score=39.39 Aligned_cols=290 Identities=17% Similarity=0.187 Sum_probs=143.7
Q ss_pred HCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH--HHHHHHHCCCCEEEEEEECCCHHHHEEHHHCC
Q ss_conf 3270288504177887689999875313966996056453013189--99876412862034333142000000001006
Q gi|254780900|r 97 MRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIR--ILKNYVEYDEINRVYGIINGTCNYILSHMNNL 174 (438)
Q Consensus 97 ~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~--~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~~~ 174 (438)
+..+.||+|.- -.|+.-+.-.|+..|+.--. -+--..|..+ ..|. + |.+|. | .
T Consensus 70 ~~~~GVVaaSa---GNHaqgvA~aa~~~gi~a~I--vmP~~ap~~Ki~~~r~-~-GA~Vi-------------l-----~ 124 (406)
T PRK08198 70 ERARGVVAASA---GNHAQGVAYAASLLGIKATI--VMPETAPLSKVQATKS-Y-GAEVV-------------L-----H 124 (406)
T ss_pred HHCCCEEEECC---CHHHHHHHHHHHHCCCCEEE--EECCCCCHHHHHHHHH-C-CCEEE-------------E-----E
T ss_conf 60685799778---76999999999981998899--9367788999999984-7-98899-------------9-----6
Q ss_pred CCCHHHHH----HHHHHCCCCCCCCCCCCC---HHHHHHHHHHHHHHHHCCCCCCCCCH--HHHHHHCCHHHHHHHHHCC
Q ss_conf 87788998----878761761565322321---17899999999999818855531000--1223204767403478719
Q gi|254780900|r 175 GLSFQDCL----EEARRQGYAEGDATFDIN---GVDSSHKIAILSAIAFGIDTSVEGVY--CEGISNITLEDIRGAADFG 245 (438)
Q Consensus 175 g~~f~~al----~~Aq~lGyaE~DP~~Di~---G~Daa~Kl~ILa~~~~g~~~~~~~v~--~~gI~~i~~~di~~a~~~g 245 (438)
|.+|+|+. +-|++.|+.--+|-+|.+ |.-+. =+=|+.. -+++|.+. +-|=--++- --.+++.+.
T Consensus 125 G~~~~ea~~~A~~~a~e~g~~~ihpfdd~~viaGqGTi-glEileq-----~p~~D~vvvpvGGGGLiaG-ia~a~K~~~ 197 (406)
T PRK08198 125 GDVYDEALAAALELAEETGATFVHPFDDPDVIAGQGTI-GLEILED-----LPDVDTVVVPIGGGGLISG-VATAVKALR 197 (406)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEECCCCCHHHHCCHHHH-HHHHHHH-----CCCCCEEEECCCCHHHHHH-HHHHHHHHC
T ss_conf 99868999999999974386753898995466010149-9999986-----7777878863786268899-999999868
Q ss_pred CEEEEEEEEEECCCCCEE---EEEEEEE--------------ECCCCCCCCC-CCCCEEEEEEEEE----------EEEE
Q ss_conf 858741013313678356---9999864--------------1677300036-6541689831131----------0058
Q gi|254780900|r 246 YCIKFLAMARRKGKGIIR---YVYPVLL--------------KYDSVMALVD-GITNAVVIETNGL----------GKLT 297 (438)
Q Consensus 246 ~~ikli~~~~~~~~~i~~---~V~P~li--------------~~~~~la~v~-g~~Nai~i~~~~~----------g~~~ 297 (438)
-.+|-+|+--........ .=+|+-+ |-+.+|.-+. .++..+.+.-+.. -.++
T Consensus 198 P~ikViGVEpe~a~~~~~Sl~ag~~v~~~~~~tiADGiav~~~G~~tf~i~~~~vD~vv~V~e~eI~~A~~~l~e~~k~v 277 (406)
T PRK08198 198 PNVRVIGVQAEGAPAMPLSLAAGRPVELESVDTIADGIAVKRPGDLTFPIIRELVDDVVTVSDEEIARAILLLLERAKLV 277 (406)
T ss_pred CCCCEEEEEECCCHHHHHHHHCCCCEECCCCCEEECCCCCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCEE
T ss_conf 99708999657876899999849956559999797114468777889999996299789989999999999999974917
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-CCCCCCC--CCCCCCCCCHHHCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 972687666102068899999974177776556-6667831--0023443885344653279999248887489999998
Q gi|254780900|r 298 MTGPGAGGSATASAVLGDICSIAKTNTQKSVSW-ALGKESS--SFSVIHCDGVYEEEKEYFIRLTIRNFEGILDKITSQM 374 (438)
Q Consensus 298 ~~G~GAG~~~TAsaV~sDli~i~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~yYLRl~v~DkpGVLa~It~il 374 (438)
..|.|| -+-| |+++.-.++ ++.+ .-. --|-+.+ .+...--..--.....+|+++...|+||.|+++++++
T Consensus 278 vEpaGA--~~lA-All~~~~~~-~gk~---Vv~ilsGGNiD~~~l~~i~er~l~~~gr~~~~~v~i~d~PG~l~~~~~~i 350 (406)
T PRK08198 278 VEGAGA--VSVA-ALLSGKVKV-RGKK---VVAVLSGGNIDVLLLSRVIERGLVAAGRYLKLRVELPDRPGQLAKLLSII 350 (406)
T ss_pred EECHHH--HHHH-HHHHCCCCC-CCCE---EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 742899--9999-998477334-7984---99997257879899999999987765997999998278996799999999
Q ss_pred HHCCCCEEEEEECCCCCC--CCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCC
Q ss_conf 866995788882267787--761359999210488999999998623830004
Q gi|254780900|r 375 SDFNISLRLFSCPHQEEN--SQEFSVFMITHKVSGKLIRDAIECFNGKSDAIR 425 (438)
Q Consensus 375 ak~~ISIesi~Q~~~~~~--~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~ 425 (438)
++++.||-.+.+...... -..+.+.++-+.-.....++.++.|+...+-.+
T Consensus 351 ~~~~anI~~i~h~R~~~~~~~~~~~v~~~iEt~~~~h~~~i~~~L~~~Gy~~~ 403 (406)
T PRK08198 351 AELRANVIDVDHDRFSPGLRLGEVEVELTLETRGPEHIDEILAALRDAGYEVK 403 (406)
T ss_pred HHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCEE
T ss_conf 75799379999887257788664899999992999999999999997899459
No 102
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.54 E-value=0.012 Score=38.71 Aligned_cols=119 Identities=14% Similarity=0.168 Sum_probs=72.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCC-CCEEEECCCC
Q ss_conf 699998256678999999999899999973996599999826852002788771022078889844889-9899986488
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEAD-IDVFVELIGG 83 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~-IDvVVEliGg 83 (438)
||||++|+|++|...++.|.++ |.+ +.+.+|+.++...+.........++.+++..-+ .++|+=++..
T Consensus 1 MkIGfIGLG~MG~~mA~nL~~~--------G~~---V~v~dr~~~~~~~~~~~ga~~~~s~~e~~~~~d~prvI~l~lp~ 69 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG--------GHE---VVGYDRNPEAVEALAAEGATGAASLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred CEEEEECHHHHHHHHHHHHHHC--------CCE---EEEECCCHHHHHHHHHCCCEECCCHHHHHHHCCCCCEEEEECCC
T ss_conf 9799983458799999999968--------990---79976999999999985994329999999707888779998179
Q ss_pred CCCCHHHHH---HHHHHCCEEEEE-ECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf 885113578---888632702885-0417788768999987531396699605645301
Q gi|254780900|r 84 EDYPAYDAV---RIALMRGCHVVT-ANKALIASHGKDLALLAQKNNAILNFEAAVAGGI 138 (438)
Q Consensus 84 ~~~pA~~~i---~~AL~~GkhVVT-ANKallA~~g~eL~~lA~~~gv~l~~easV~ggi 138 (438)
. .+..+.+ ...|+.|.-||- .|=.+ ..-.++.+.++++|..| ..|-|-||.
T Consensus 70 ~-~~Vd~Vi~~l~~~l~~g~iiID~sts~~--~~t~~~a~~l~~~gi~f-lDapVSGG~ 124 (301)
T PRK09599 70 G-EITDSTIDELAPLLEAGDIVIDGGNSYY--KDDIRRAELLAEKGIHF-VDVGTSGGV 124 (301)
T ss_pred C-HHHHHHHHHHHHHCCCCCEEEECCCCCH--HHHHHHHHHHHHCCCCE-ECCCCCCCH
T ss_conf 7-0389999999962789988870899983--88999999999859945-447667887
No 103
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.53 E-value=0.0055 Score=41.00 Aligned_cols=62 Identities=16% Similarity=0.236 Sum_probs=41.1
Q ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 92488874899999988669957888822677877613599992104889999999986238300047
Q gi|254780900|r 359 TIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRY 426 (438)
Q Consensus 359 ~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~ 426 (438)
.-.|.||++++|+++|++++|+|+.+..+ ..++.+-.++=++.. .-++++++|++++.+.+.
T Consensus 5 ih~NvPG~l~~I~~il~~~~iNI~~m~~~---srg~~ay~vidvd~~---~~~~~~~~l~~i~gvi~v 66 (69)
T cd04901 5 IHKNVPGVLGQINTILAEHNINIAAQYLQ---TRGEIGYVVIDIDSE---VSEELLEALRAIPGTIRV 66 (69)
T ss_pred EECCCCCHHHHHHHHHHHCCCCHHHHCCC---CCCCEEEEEEEECCC---CCHHHHHHHHCCCCEEEE
T ss_conf 71698868999999999859997997242---689768999990798---989999999729985999
No 104
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.47 E-value=0.023 Score=36.61 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=42.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCC
Q ss_conf 999924888748999999886699578888226778776135999921048899999999862383
Q gi|254780900|r 356 IRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKS 421 (438)
Q Consensus 356 LRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~ 421 (438)
+=+++.|+||-|+++.++|++++|+||.+----.. ..+.+-+|+=++. ++.+++.|+...
T Consensus 2 iaVev~D~pGgL~~il~~L~~~~INIeY~Yaf~~~-~~~~a~lI~r~~d-----~e~a~~~L~~~g 61 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK-KGGKALLIFRTED-----IEKAIEVLQERG 61 (65)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECC-CCCEEEEEEEECC-----HHHHHHHHHHCC
T ss_conf 89994798871999999998879887999999437-8976899998199-----999999999867
No 105
>pfam00044 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=96.47 E-value=0.02 Score=37.11 Aligned_cols=91 Identities=23% Similarity=0.340 Sum_probs=49.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC------C---------CCCCCCC---------CH
Q ss_conf 6999982566789999999998999999739965999998268520------0---------2788771---------02
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI------D---------RGIDCLR---------YE 60 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k------~---------~~~~~~~---------~~ 60 (438)
|||||-|||.+|+.+++++.++ .++++++|-+..... + ..+.... ..
T Consensus 1 ikIgINGfGRIGR~v~R~~~~~---------~~i~iv~INd~~~~~~~a~LlkyDS~hG~~~~~v~~~~~~i~i~g~~I~ 71 (150)
T pfam00044 1 IKVGINGFGRIGRLVLRAALAQ---------DDLEVVAINDLTDPETLAYLLKYDSVHGRFDGEVEVDEDGLIVNGKKIK 71 (150)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---------CCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEECCCEEEECCEEEE
T ss_conf 9898977868999999999768---------9967999854799999999984135468869864263980899995789
Q ss_pred H--CCCHHHH-HCCCCCCEEEECCCCCCCCHHHHHHHHHHCC--EEEEEEC
Q ss_conf 2--0788898-4488998999864888851135788886327--0288504
Q gi|254780900|r 61 W--FDDPLIM-AGEADIDVFVELIGGEDYPAYDAVRIALMRG--CHVVTAN 106 (438)
Q Consensus 61 ~--~~d~~~l-i~~~~IDvVVEliGg~~~pA~~~i~~AL~~G--khVVTAN 106 (438)
+ ..|+.++ ..+.++|+|+|++|-... .+-...-|++| |=+|||-
T Consensus 72 ~~~~~~p~~i~W~~~gvDiViEcTG~f~~--~~~~~~hl~~GaKkViiSaP 120 (150)
T pfam00044 72 VFAERDPAELPWGELGVDIVVESTGVFTT--AEKAEAHLKAGAKKVIISAP 120 (150)
T ss_pred EEECCCCCCCCCCCCCCCEEEEECCEEEE--HHHHHHHHHCCCCEEEEECC
T ss_conf 99548955286243547889980432402--88777787579877999579
No 106
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.40 E-value=0.0092 Score=39.42 Aligned_cols=44 Identities=14% Similarity=0.250 Sum_probs=33.0
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEE
Q ss_conf 99924888748999999886699578888226778776135999
Q gi|254780900|r 357 RLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFM 400 (438)
Q Consensus 357 Rl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IVi 400 (438)
-+.++|+||.|+++|++|++++|||..+.-.+.........+++
T Consensus 2 sVf~enrpG~L~~v~~~L~~~~InI~alsi~dt~~~~GilRliv 45 (56)
T cd04889 2 SVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIF 45 (56)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEE
T ss_conf 27823898519999999998799879976202567734899997
No 107
>PRK11898 prephenate dehydratase; Provisional
Probab=96.35 E-value=0.032 Score=35.59 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=49.1
Q ss_pred EEEEEE-CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEE-EEEECCHHHHHHHHHHHHCCCCC
Q ss_conf 799992-4888748999999886699578888226778776135999-92104889999999986238300
Q gi|254780900|r 355 FIRLTI-RNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFM-ITHKVSGKLIRDAIECFNGKSDA 423 (438)
Q Consensus 355 YLRl~v-~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IVi-iTh~~~e~~i~~ai~~i~~l~~v 423 (438)
=|-|++ .|+||.|.++-+.|+++||++-++.-.+........-+++ +.-...+..++++++.|+.....
T Consensus 197 Sl~f~~~~d~pGaL~~~L~~Fa~~~INLtkIeSRP~~~~~~~Y~FyiD~egh~~d~~v~~aL~~l~~~~~~ 267 (285)
T PRK11898 197 SLALTLPANVPGALYKALSEFAWRGINLTRIESRPTKTGLGEYFFFIDLEGHIDDVLVAEALKELEALGED 267 (285)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999489998679999999998793758898201689996189999984687989999999999985598
No 108
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=96.34 E-value=0.011 Score=38.95 Aligned_cols=33 Identities=33% Similarity=0.660 Sum_probs=26.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf 699998256678999999999899999973996599999826
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISAR 46 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r 46 (438)
|||||-|||.+|+.+++.+.++ .++++++|-+.
T Consensus 1 ikIgINGfGRIGR~v~R~~~~~---------~~~~vv~INd~ 33 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLER---------PDIEVVAINDL 33 (149)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---------CCCEEEEECCC
T ss_conf 9898977878999999999768---------99589984577
No 109
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=96.28 E-value=0.05 Score=34.26 Aligned_cols=73 Identities=16% Similarity=0.258 Sum_probs=50.9
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEE--EEEECCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 327999924888748999999886699578888226778776135999--92104889999999986238300047
Q gi|254780900|r 353 EYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFM--ITHKVSGKLIRDAIECFNGKSDAIRY 426 (438)
Q Consensus 353 ~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IVi--iTh~~~e~~i~~ai~~i~~l~~v~~~ 426 (438)
+--|-|++.|+||.|.++-+.|+++||++-++.-.+...+-+. -+++ +--...+..+++++++|+......+.
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~-Y~F~iD~eg~~~~~~v~~AL~eL~~~t~~~ki 268 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGE-YLFFIDIEGHIDDPLVKEALEELKEITEFVKI 268 (279)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCEE-EEEEEEEECCCCCHHHHHHHHHHHHHEEEEEE
T ss_conf 4999998599870499999999876946226860206898705-99999995476866699999999853027999
No 110
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=96.27 E-value=0.0068 Score=40.33 Aligned_cols=90 Identities=23% Similarity=0.292 Sum_probs=54.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC------C-------CCCC-CCCHHCCCHHHHHCC
Q ss_conf 9999825667899999999989999997399659999982685200------2-------7887-710220788898448
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNID------R-------GIDC-LRYEWFDDPLIMAGE 71 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~------~-------~~~~-~~~~~~~d~~~li~~ 71 (438)
||+++|.|.+|++++..|.++ |.++.+ ..|+.+.. + ++.+ ....+++|..+.+++
T Consensus 2 KI~IiGaG~wGtAla~~la~n--------~~~V~l---~~r~~~~~~~i~~~~~n~~~lp~~~l~~~i~~~~dl~~a~~~ 70 (159)
T pfam01210 2 KIAVLGAGSWGTALAKVLARN--------GHEVRL---WGRDEELIEEINTTRENVKYLPGIKLPDNLRATTDLEEAIKG 70 (159)
T ss_pred EEEEECCCHHHHHHHHHHHHC--------CCEEEE---EEECCHHHHHHHHCCCCCHHCCCCCCCCCEEECCCHHHHHHC
T ss_conf 899999699999999999987--------998999---990436667788669782104786455530542889999837
Q ss_pred CCCCEEEECCCCCCCCHHHH---HHHHHHCCEEEEEECHHHH
Q ss_conf 89989998648888511357---8888632702885041778
Q gi|254780900|r 72 ADIDVFVELIGGEDYPAYDA---VRIALMRGCHVVTANKALI 110 (438)
Q Consensus 72 ~~IDvVVEliGg~~~pA~~~---i~~AL~~GkhVVTANKall 110 (438)
. |++|-++.. ..-.+. +...+..++.+|.+-|++-
T Consensus 71 a--diIiiavps--~~~~~~~~~i~~~~~~~~~iv~~sKGie 108 (159)
T pfam01210 71 A--DIIVLAVPS--QALREVLKQLKGLLSPGAILVSLTKGIE 108 (159)
T ss_pred C--CEEEEECCH--HHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 9--899991748--8999999999865576556888751442
No 111
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=96.26 E-value=0.032 Score=35.61 Aligned_cols=16 Identities=25% Similarity=0.206 Sum_probs=7.6
Q ss_pred HHHHHHHHHCCCEEEE
Q ss_conf 9999875313966996
Q gi|254780900|r 115 KDLALLAQKNNAILNF 130 (438)
Q Consensus 115 ~eL~~lA~~~gv~l~~ 130 (438)
+.|..+|+..|+.|.|
T Consensus 128 ~dL~~lae~~~IPF~~ 143 (287)
T PRK13011 128 PDLEPLAAWHGIPFHH 143 (287)
T ss_pred HHHHHHHHHCCCCEEE
T ss_conf 6789999976998288
No 112
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.25 E-value=0.027 Score=36.12 Aligned_cols=64 Identities=9% Similarity=0.093 Sum_probs=46.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCE-EEEEEEEE--ECCHHHHHHHHHHHHC
Q ss_conf 9999248887489999998866995788882267787761-35999921--0488999999998623
Q gi|254780900|r 356 IRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQE-FSVFMITH--KVSGKLIRDAIECFNG 419 (438)
Q Consensus 356 LRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~-~~IViiTh--~~~e~~i~~ai~~i~~ 419 (438)
|+++..|+||++++||+.++++|-+|....|.....++.. ..+.+... ..+...+++....+..
T Consensus 2 L~i~CpD~~GIVa~Vs~~l~~~g~nI~e~~q~~D~~~~~FFmR~~f~~~~~~~~~~~l~~~f~~ia~ 68 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAA 68 (74)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 8997899888199999999987998866237736989848999999758988799999999999999
No 113
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.24 E-value=0.019 Score=37.23 Aligned_cols=142 Identities=22% Similarity=0.370 Sum_probs=75.1
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC-------CC-----CCC-----------C--C
Q ss_conf 269999825667899999999989999997399659999982685200-------27-----887-----------7--1
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNID-------RG-----IDC-----------L--R 58 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~-------~~-----~~~-----------~--~ 58 (438)
++||||-|||.+|+.+++.+.++ .++++++|-+...+.+ .+ +.. + .
T Consensus 2 ~ikigINGFGRIGR~v~R~~~~~---------~~i~vvaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~ 72 (337)
T PTZ00023 2 VVKIGINGFGRIGRLVHRASLAR---------ENVEVVAINDPFMTPDYIKYLLKYDSVHGSLPCEVSVTSDHLMIGSKK 72 (337)
T ss_pred CEEEEEECCCHHHHHHHHHHHCC---------CCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCEEEECCEEEECCEE
T ss_conf 67999956877899999998418---------994899978999999999998653678998999789838959999978
Q ss_pred CH--HCCCHHHHH-CCCCCCEEEECCCCCCCCHHHHHHHHHHCC--EEEEEEC-HH--HHHHHH--HHHHHHHHHCCCEE
Q ss_conf 02--207888984-488998999864888851135788886327--0288504-17--788768--99998753139669
Q gi|254780900|r 59 YE--WFDDPLIMA-GEADIDVFVELIGGEDYPAYDAVRIALMRG--CHVVTAN-KA--LIASHG--KDLALLAQKNNAIL 128 (438)
Q Consensus 59 ~~--~~~d~~~li-~~~~IDvVVEliGg~~~pA~~~i~~AL~~G--khVVTAN-Ka--llA~~g--~eL~~lA~~~gv~l 128 (438)
.. -..|+.++- .+-++|+|+|++|-.. .++-...-|++| |=++||- |. +....| ++.+. .+..+.=
T Consensus 73 I~~~~~~dp~~ipW~~~gvDiViEcTG~f~--~~~~a~~Hl~~GakkViiSAP~~d~~~t~V~GVN~~~~~--~~~~IIS 148 (337)
T PTZ00023 73 VHLFFEKDPSQIPWGKNDVDVVAECTGVFT--STEKAKLHLKGGAKLVIISAPPSDSTPIYVFGVNHTQYD--KSQRIVS 148 (337)
T ss_pred EEEECCCCHHHCCCCCCCCCEEEECCCCCC--CHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECCHHHCC--CCCCEEE
T ss_conf 875056996669922039878996265446--889999998769977997689988886799835634348--7672896
Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHH
Q ss_conf 960564530131899987641286203433314200000
Q gi|254780900|r 129 NFEAAVAGGIPIIRILKNYVEYDEINRVYGIINGTCNYI 167 (438)
Q Consensus 129 ~~easV~ggiPii~~l~~~l~~~~i~~i~GIlnGT~nyI 167 (438)
.=.+|+-+=.|+++.|.+.+ ||-+|...=|
T Consensus 149 nASCTTNclAPl~kvL~~~f---------gI~~g~mTTI 178 (337)
T PTZ00023 149 NASCTTNCLAPLAKVINDNF---------GIVEGLMTTV 178 (337)
T ss_pred CCCCCCCCHHHHHHHHHHHC---------CEEEEEEEEE
T ss_conf 56310030030798786534---------8678789986
No 114
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.21 E-value=0.022 Score=36.73 Aligned_cols=55 Identities=15% Similarity=0.224 Sum_probs=43.2
Q ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHH
Q ss_conf 924888748999999886699578888226778776135999921048899999999862
Q gi|254780900|r 359 TIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFN 418 (438)
Q Consensus 359 ~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~ 418 (438)
.+.|+||+.++|-+.||+++||++-|.|-...+ +... ++..+++.++..+++.|+
T Consensus 7 ~vpd~pg~aa~iF~~LA~~~InVDmIvQ~~~~~--~~~~---isFTv~~~dl~~a~~~L~ 61 (61)
T cd04891 7 GVPDKPGVAAKIFSALAEAGINVDMIVQSVSRG--GTTD---ISFTVPKSDLEKALAILE 61 (61)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC--CCCE---EEEEECHHHHHHHHHHHC
T ss_conf 899997579999999998598179998658889--9521---899824989999999849
No 115
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=96.21 E-value=0.024 Score=36.50 Aligned_cols=64 Identities=14% Similarity=0.214 Sum_probs=42.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEE------EEEECCHHHHHHHHHHHHC
Q ss_conf 999924888748999999886699578888226778776135999------9210488999999998623
Q gi|254780900|r 356 IRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFM------ITHKVSGKLIRDAIECFNG 419 (438)
Q Consensus 356 LRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IVi------iTh~~~e~~i~~ai~~i~~ 419 (438)
+.+.-.|+||.+.+||+.|++++|+|+.+.+.-......-.+++. +...+....++..++.|..
T Consensus 2 ~~v~G~DrpGIv~~it~~La~~~inI~~l~t~~~~a~~sg~~lF~a~~~v~lP~~~~~~~L~~~l~~l~~ 71 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELCD 71 (81)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8998089988799999999986998146687776399998103689999937999999999999999988
No 116
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=96.20 E-value=0.028 Score=36.00 Aligned_cols=64 Identities=20% Similarity=0.292 Sum_probs=44.6
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEE-EECCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 992488874899999988669957888822677877613599992-104889999999986238300047
Q gi|254780900|r 358 LTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMIT-HKVSGKLIRDAIECFNGKSDAIRY 426 (438)
Q Consensus 358 l~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiT-h~~~e~~i~~ai~~i~~l~~v~~~ 426 (438)
-+-.+.||+++++++.+||+||||..++-.+++..+ ...+.++| ++.+..- +.+|.+++.|++.
T Consensus 100 ~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~-e~~l~IVte~~iP~~l----i~el~~i~gVk~i 164 (167)
T COG2150 100 PEDARYPGILAGVASLIAKRGISIRQIISEDPELQE-EPKLTIVTERPIPGDL----IDELKKIDGVKKI 164 (167)
T ss_pred ECCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCEEEEEEECCCCHHH----HHHHHCCCCCEEE
T ss_conf 546777658999999998759618987257966578-8508999805688789----9998635672148
No 117
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.019 Score=37.26 Aligned_cols=94 Identities=15% Similarity=0.182 Sum_probs=65.0
Q ss_pred CCCCEEEEEEEECCCCCCCCC-----CCCCCHHCCCHHHHHCCCCCCEEE---ECCCCCCCCHH-HHHHHHHHCCEEEEE
Q ss_conf 399659999982685200278-----877102207888984488998999---86488885113-578888632702885
Q gi|254780900|r 34 DQHSFVVSAISARDKNIDRGI-----DCLRYEWFDDPLIMAGEADIDVFV---ELIGGEDYPAY-DAVRIALMRGCHVVT 104 (438)
Q Consensus 34 ~g~~i~i~~i~~r~~~k~~~~-----~~~~~~~~~d~~~li~~~~IDvVV---EliGg~~~pA~-~~i~~AL~~GkhVVT 104 (438)
++..+.+.++++++....... ......+.++..+.++-.. +..+ -..||...+++ +++.+||++|++||+
T Consensus 24 ~~~~~~iv~vvD~~~~~~~~~~~l~~~~~~vpii~s~~~~~e~~~-e~liIgia~~gG~~~~~~~~~i~eAl~~G~nVvs 102 (339)
T COG3367 24 YSEKYAIVAVVDRREAGDDTPRELGGDKADVPIISSVEEALEGLA-EALIIGIAPPGGVLPESWREYIVEALEAGMNVVS 102 (339)
T ss_pred CCCCCEEEEEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHCCC-CEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHH
T ss_conf 431000355774300145567874786689710054899973476-4489996158885757889999999983731665
Q ss_pred ECHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 0417788768999987531396699
Q gi|254780900|r 105 ANKALIASHGKDLALLAQKNNAILN 129 (438)
Q Consensus 105 ANKallA~~g~eL~~lA~~~gv~l~ 129 (438)
.=-..++. .+++.++|+++|+++.
T Consensus 103 glh~~ls~-dp~~~k~A~~~G~rl~ 126 (339)
T COG3367 103 GLHSFLSD-DPEFVKLAERTGVRLD 126 (339)
T ss_pred HHHHHHHC-CHHHHHHHHHCCCEEE
T ss_conf 55777611-8689999987197567
No 118
>PRK07334 threonine dehydratase; Provisional
Probab=96.18 E-value=0.08 Score=32.82 Aligned_cols=294 Identities=14% Similarity=0.158 Sum_probs=146.9
Q ss_pred HCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH--HHHHHHHCCCCEEEEEEECCCHHHHEEHHHCC
Q ss_conf 3270288504177887689999875313966996056453013189--99876412862034333142000000001006
Q gi|254780900|r 97 MRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIR--ILKNYVEYDEINRVYGIINGTCNYILSHMNNL 174 (438)
Q Consensus 97 ~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~--~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~~~ 174 (438)
++.+.||||.- -.|+.-+.-.|+..|+..-. -+--..|..+ .+|. + |.+|. +-|. +|
T Consensus 66 ~~~~GVVaaSa---GNHaqgvA~aa~~lgi~a~I--vmP~~~p~~Ki~~~r~-~-GA~Vi-----l~g~-~~-------- 124 (399)
T PRK07334 66 ERARGVIAMSA---GNHAQGVAYHAQRLGIPATI--VMPRFTPTVKVERTRG-F-GAEVV-----LEGD-TF-------- 124 (399)
T ss_pred HHCCCEEEECC---CHHHHHHHHHHHHHCCCEEE--EECCCCCHHHHHHHHH-C-CCEEE-----EECC-CC--------
T ss_conf 75586799888---66999999999981998799--9768784999999985-6-97799-----9789-81--------
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH--HH---HHHCCHHHHHHHHHCCCEEE
Q ss_conf 87788998878761761565322321178999999999998188555310001--22---32047674034787198587
Q gi|254780900|r 175 GLSFQDCLEEARRQGYAEGDATFDINGVDSSHKIAILSAIAFGIDTSVEGVYC--EG---ISNITLEDIRGAADFGYCIK 249 (438)
Q Consensus 175 g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa~~~~g~~~~~~~v~~--~g---I~~i~~~di~~a~~~g~~ik 249 (438)
.-.++.|.+-|++.|+.=-+|-+|.+=+- ..- + ++-..+...+++|.+.+ -| |+.+. .+.+.+.-.+|
T Consensus 125 ~~a~~~A~~~a~~~g~~~ihpfdd~~via-Gqg-T-iglEileq~p~~D~vvvpvGGGGLisGia----~a~K~~~P~ik 197 (399)
T PRK07334 125 DEARAHARELAEEEGLTFVHPYDDPAVIA-GQG-T-VALEMLEDAPDLDTLVVPIGGGGLISGIA----TAAKALKPDIE 197 (399)
T ss_pred HHHHHHHHHHHHHCCCEECCCCCCHHHHH-HHH-H-HHHHHHHHCCCCCEEEEECCCCHHHHHHH----HHHHCCCCCCE
T ss_conf 69999999999853988548889866776-567-8-99999985789998999278604799999----99960499978
Q ss_pred EEEEEEEC---------CCCCEEEEEEE-------EEECCCCCCCCC-CCCCEEEEEEEEE----------EEEEEEECC
Q ss_conf 41013313---------67835699998-------641677300036-6541689831131----------005897268
Q gi|254780900|r 250 FLAMARRK---------GKGIIRYVYPV-------LLKYDSVMALVD-GITNAVVIETNGL----------GKLTMTGPG 302 (438)
Q Consensus 250 li~~~~~~---------~~~i~~~V~P~-------li~~~~~la~v~-g~~Nai~i~~~~~----------g~~~~~G~G 302 (438)
.+|+--.. +..+.... ++ --|.+.+|.-+. -++..+.+.-+.. ..+++.|.|
T Consensus 198 ViGVEpe~a~~m~~sl~~~~~~~~~-~TiADGlav~~~G~~tf~i~~~~vD~vv~Vse~eI~~Am~~l~e~~k~vvEpaG 276 (399)
T PRK07334 198 IIGVQTELYPSMYAALKGVALPCGG-STIAEGIAVKSPGQLTLAIVRRLVDDILLVDEADIEQAIALLLEIEKTVVEGAG 276 (399)
T ss_pred EEEECCCCCHHHHHHHCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 9997658776999984699988998-732012246888777899999628977998999999999999996598657717
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCCHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 766610206889999997417777655666678310--023443885344653279999248887489999998866995
Q gi|254780900|r 303 AGGSATASAVLGDICSIAKTNTQKSVSWALGKESSS--FSVIHCDGVYEEEKEYFIRLTIRNFEGILDKITSQMSDFNIS 380 (438)
Q Consensus 303 AG~~~TAsaV~sDli~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~yYLRl~v~DkpGVLa~It~ilak~~IS 380 (438)
| -+-| |+++.-.++ ++.+-.. .--|-+.+. +...--......-..+|+++.+.|+||-|+++++++++.+.|
T Consensus 277 A--~~lA-All~~~~~~-~gk~Vv~--vlsGGNiD~~~l~~ii~r~l~~~gr~~~~~v~ipd~PG~l~~~~~~i~~~~an 350 (399)
T PRK07334 277 A--AGLA-ALLAHPERF-RGRKVGL--VLCGGNIDTRLLANVLLRGLVRAGRLARLRVDIRDRPGALAKVTALIGEAGAN 350 (399)
T ss_pred H--HHHH-HHHHCHHHH-CCCEEEE--EECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 9--9999-997381664-6981999--96868869889999999988855998999998888996799999998217997
Q ss_pred EEEEEECCCC--CCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCC
Q ss_conf 7888822677--87761359999210488999999998623830004
Q gi|254780900|r 381 LRLFSCPHQE--ENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIR 425 (438)
Q Consensus 381 Iesi~Q~~~~--~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~ 425 (438)
|-.+.+.... ..-..+.+.+.-+.-....+++.++.|++..+..+
T Consensus 351 i~~i~h~r~~~~~~~~~~~v~~~~Et~~~~h~~~l~~~L~~~Gy~~~ 397 (399)
T PRK07334 351 IIEVHHQRLFTTLPAKGAELELVIETRDAAHIQEVMAALRAAGFVAR 397 (399)
T ss_pred EEEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCEE
T ss_conf 69999887157788773899999993999999999999997799856
No 119
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.17 E-value=0.048 Score=34.38 Aligned_cols=67 Identities=21% Similarity=0.138 Sum_probs=42.2
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC-CCCCHHCCCHHHHHCCCCCCEEEEC
Q ss_conf 2699998256678999999999899999973996599999826852002788-7710220788898448899899986
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGID-CLRYEWFDDPLIMAGEADIDVFVEL 80 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~-~~~~~~~~d~~~li~~~~IDvVVEl 80 (438)
|+|||++|||++|+++++-|.++ +....-..+++|+.++...+. ......++|..+++.+ .|+|+=+
T Consensus 2 m~kI~~IG~G~Mg~Aii~gl~~~--------~~~~~~i~v~~r~~~~~~~l~~~~~v~~~~~~~~~~~~--~diIiLa 69 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS--------GVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQE--ADVVVLA 69 (267)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--------CCCCCEEEEECCCHHHHHHHHHHHCCEEECCHHHHHHC--CCEEEEE
T ss_conf 98799986689999999999977--------98945289977999999999997396785786988721--9999997
No 120
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.16 E-value=0.067 Score=33.33 Aligned_cols=202 Identities=14% Similarity=0.116 Sum_probs=102.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC-------------CCC-C-------CCCCCHHCC
Q ss_conf 6999982566789999999998999999739965999998268520-------------027-8-------877102207
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI-------------DRG-I-------DCLRYEWFD 63 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k-------------~~~-~-------~~~~~~~~~ 63 (438)
=|||++|.|++|+|.+.... .+.|.++.+.-+......+ +++ + .+.....++
T Consensus 310 ~kv~ViGaG~MG~gIA~~~a-------~~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~v~~g~~~~~~~~~~l~~i~~~~ 382 (706)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTA-------TKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHMTPAERDKQMALISGTT 382 (706)
T ss_pred CEEEEECCCCCCHHHHHHHH-------HHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEEEC
T ss_conf 67999864732389999999-------98698799997999999999998899999998618999899999862241004
Q ss_pred CHHHHHCCCCCCEEEECCCCCCCCH-HHHHHHHHH--CCEEEE-EECHHHHHHHHHHHHHHHHHC----CCEEEEECCCC
Q ss_conf 8889844889989998648888511-357888863--270288-504177887689999875313----96699605645
Q gi|254780900|r 64 DPLIMAGEADIDVFVELIGGEDYPA-YDAVRIALM--RGCHVV-TANKALIASHGKDLALLAQKN----NAILNFEAAVA 135 (438)
Q Consensus 64 d~~~li~~~~IDvVVEliGg~~~pA-~~~i~~AL~--~GkhVV-TANKallA~~g~eL~~lA~~~----gv~l~~easV~ 135 (438)
|+..+ .++|+|||++ .|... +.-+.+.|+ ...|.| ..|---+. =.+|.+..+.- |..|+--+.++
T Consensus 383 ~~~~~---~~~DlVIEAv--~E~~~~K~~v~~~le~~~~~~aIlAtNTSsl~--i~~la~~~~rP~r~iG~HFfnP~~~m 455 (706)
T PRK11154 383 DYRGF---KHADLVIEAV--FEDLALKQQMVADVEQNCAEHTIFASNTSSLP--IGQIAAAAARPEQVIGLHYFSPVEKM 455 (706)
T ss_pred CHHHH---CCCCEEEEEC--CCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC--HHHHHHHCCCCCEEEEEEECCCCCCC
T ss_conf 41231---5688799971--45288899999999964798858950676776--89999864784104554425774426
Q ss_pred CHHHHHH-------HHHHHHH-CCCCEEEEEEECCCHHHHEEHH-----------HCCCCCHHHHHHHHHHCCCCC-CCC
Q ss_conf 3013189-------9987641-2862034333142000000001-----------006877889988787617615-653
Q gi|254780900|r 136 GGIPIIR-------ILKNYVE-YDEINRVYGIINGTCNYILSHM-----------NNLGLSFQDCLEEARRQGYAE-GDA 195 (438)
Q Consensus 136 ggiPii~-------~l~~~l~-~~~i~~i~GIlnGT~nyIL~~m-----------~~~g~~f~~al~~Aq~lGyaE-~DP 195 (438)
--+=||+ ++...+. +.++.+.-=+.+-+-.||.++| .++|.+.+++=+-.++.|+.= |=-
T Consensus 456 ~LVEVi~g~~Ts~et~~~~~~~~~~lgK~pv~v~d~pGFi~NRil~~~~~ea~~l~~eG~~~~~ID~a~~~~G~pmGPf~ 535 (706)
T PRK11154 456 PLVEVIPHAKTSAETIATTVALAKKQGKTPIVVKDGAGFYVNRILAPYMNEAARLLLEGEPIEHIDAALVKFGFPVGPIT 535 (706)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHH
T ss_conf 42799437898389999999999975987899632374179999999999999999769999999999997599878568
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 2232117899999999999818855
Q gi|254780900|r 196 TFDINGVDSSHKIAILSAIAFGIDT 220 (438)
Q Consensus 196 ~~Di~G~Daa~Kl~ILa~~~~g~~~ 220 (438)
-.|+-|+|+..+..=.-.-.||.+.
T Consensus 536 l~D~vGlDv~~~v~~~l~~~~g~r~ 560 (706)
T PRK11154 536 LLDEVGIDVGTKIIPILEAALGERF 560 (706)
T ss_pred HHHHHCHHHHHHHHHHHHHHHCCCC
T ss_conf 8775267889999999998728777
No 121
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=96.16 E-value=0.019 Score=37.21 Aligned_cols=69 Identities=10% Similarity=0.082 Sum_probs=43.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 799992488874899999988669957888822677877613599992104889999999986238300047
Q gi|254780900|r 355 FIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRY 426 (438)
Q Consensus 355 YLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~ 426 (438)
-|++.++++||||.++|.++++++.+|--..|.-. ..++..-+-+- ----...+..++.+++.++|.+.
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~-~~g~~~~iYmE--iEgi~d~e~l~~~lks~d~v~ev 72 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLE-KDGEKALIYME--IEGIDDFEKLLERLKSFDYVIEV 72 (218)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCEEEEEHHHH-CCCCEEEEEEE--EECCCCHHHHHHHHHCCCEEEEE
T ss_conf 26888604752899878899861896586412233-06716799999--60787899999986334547876
No 122
>PRK07680 late competence protein ComER; Validated
Probab=96.14 E-value=0.01 Score=39.13 Aligned_cols=87 Identities=14% Similarity=0.188 Sum_probs=51.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC--CCCCCHHCCCHHHHHCCCCCCEEEECCC
Q ss_conf 69999825667899999999989999997399659999982685200278--8771022078889844889989998648
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGI--DCLRYEWFDDPLIMAGEADIDVFVELIG 82 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~--~~~~~~~~~d~~~li~~~~IDvVVEliG 82 (438)
||||++|||++|+++++-+.+.. ..+..-..+.+|+.++...+ ..+....++|..+++.+. |+|+=++
T Consensus 1 MkI~fIG~GnMg~Aii~gl~~~~-------~~~~~~i~i~~r~~~~~~~l~~~~~~i~~~~~~~~~~~~~--dvIiLaV- 70 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESR-------AVKPSCLTITNRTPAKAYHIKEKYPSIHVAKTIEEVIEQS--ELIFICV- 70 (273)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-------CCCCCEEEEECCCHHHHHHHHHHCCCEEEECCHHHHHHCC--CEEEEEC-
T ss_conf 98999876999999999999779-------9894569998899899999998769908868889998409--9899964-
Q ss_pred CCCCCH--HHHHH---HHHHCCEEEEE
Q ss_conf 888511--35788---88632702885
Q gi|254780900|r 83 GEDYPA--YDAVR---IALMRGCHVVT 104 (438)
Q Consensus 83 g~~~pA--~~~i~---~AL~~GkhVVT 104 (438)
.|. .+++. ..+..+++||+
T Consensus 71 ---KPq~~~~vl~~i~~~~~~~~~iIS 94 (273)
T PRK07680 71 ---KPLDIYPLLKKLAPHFSDEKCLVS 94 (273)
T ss_pred ---CHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf ---888899999998863478848999
No 123
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.10 E-value=0.031 Score=35.67 Aligned_cols=93 Identities=16% Similarity=0.189 Sum_probs=53.3
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCC-CHHHHHCCCCCCEEEE
Q ss_conf 987269999825667899999999989999997399659999982685200278877102207-8889844889989998
Q gi|254780900|r 1 MAGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFD-DPLIMAGEADIDVFVE 79 (438)
Q Consensus 1 Msk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~-d~~~li~~~~IDvVVE 79 (438)
|++++||||-..|.||+.++++|.++.= .++ ++.-.+.++.+..+.+...+..+.. +.++ ....++|++.=
T Consensus 1 M~~~~niAIGATGaVG~~~l~iLeer~f------Pv~-~L~llas~~~s~~~~i~f~g~~v~~~~~~~-f~~~~vdi~ff 72 (323)
T PRK06901 1 MDATLNIAIAAEFELSEKIVEALEESDL------EIS-SISIVEIEPFGEEQGIRFNNKAVEQIAPDE-VEWADFNYVFF 72 (323)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCC------CCC-EEEEEEECCCCCCCEEEECCEEEEEECHHH-CCCCCCCEEEE
T ss_conf 9976418997666899999999997599------946-087776326678857998998999951213-56324889998
Q ss_pred CCCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 6488885113578888632702885
Q gi|254780900|r 80 LIGGEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 80 liGg~~~pA~~~i~~AL~~GkhVVT 104 (438)
+ |+. ...++.-.|.++|.-||-
T Consensus 73 A-g~~--~s~~~~p~A~~aG~vVID 94 (323)
T PRK06901 73 A-GKL--EQVEHLAQAAEAGCIVID 94 (323)
T ss_pred C-CCH--HHHHHHHHHHHCCCEEEE
T ss_conf 5-828--999999999988989998
No 124
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=96.10 E-value=0.0073 Score=40.10 Aligned_cols=49 Identities=10% Similarity=0.230 Sum_probs=36.5
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEE
Q ss_conf 6532799992488874899999988669957888822677877613599
Q gi|254780900|r 351 EKEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVF 399 (438)
Q Consensus 351 ~~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IV 399 (438)
-.+|-+++.+.|+||++.++|.+|..|+|+|+++...-........|.+
T Consensus 90 ~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lf 138 (176)
T COG2716 90 PAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLF 138 (176)
T ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHCCCCHHHCEEEEEECCCCCCCCE
T ss_conf 8319999971688358999999986469865550455665799985414
No 125
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.09 E-value=0.06 Score=33.69 Aligned_cols=67 Identities=12% Similarity=0.146 Sum_probs=50.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCC
Q ss_conf 999924888748999999886699578888226778776135999921048899999999862383000
Q gi|254780900|r 356 IRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAI 424 (438)
Q Consensus 356 LRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~ 424 (438)
||+++.|+||.|+++++..++.|=+|..+--.+... +....-|+-+.....-.+..++.++.++.|.
T Consensus 2 lRl~~~~~pG~Lg~vataIg~~GGnI~~idvve~~~--~~~v~Ditv~~~d~~h~~~Iv~al~~l~gV~ 68 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGR--DYTVRDITVDAPSEEHAETIVAAVRALPEVK 68 (74)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEECC--CEEEEEEEEECCCHHHHHHHHHHHHCCCCEE
T ss_conf 899954998649999999987698567789999449--9599999998697788999999996199859
No 126
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.08 E-value=0.044 Score=34.62 Aligned_cols=66 Identities=14% Similarity=0.210 Sum_probs=54.9
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCC
Q ss_conf 999248887489999998866995788882267787761359999210488999999998623830
Q gi|254780900|r 357 RLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSD 422 (438)
Q Consensus 357 Rl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~ 422 (438)
-|...|+||.|..|...|.+|+++|-||+-.......+.-.|.|=.++..+..++..++.|+..-.
T Consensus 3 ~f~L~d~pGslk~v~D~Lr~~~~rI~SILTs~~~~~~g~R~V~IRi~~mD~a~l~~l~e~L~~~~~ 68 (72)
T cd04884 3 TFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRSKENELIEELKAKFT 68 (72)
T ss_pred EEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 588689998527999999877985999983367689982289999635657779999999985455
No 127
>TIGR01127 ilvA_1Cterm threonine dehydratase; InterPro: IPR005789 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. A form of threonine dehydratase with two copies of the C-terminal domain is described by . This model describes a phylogenetically distinct which branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any domain. Many members of this model are found in species with other isoleucine biosynthetic enzymes.; GO: 0004794 L-threonine ammonia-lyase activity.
Probab=96.07 E-value=0.06 Score=33.69 Aligned_cols=283 Identities=16% Similarity=0.152 Sum_probs=150.1
Q ss_pred HCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCC-HHHHHHHHHH-HHHCCCCEEEEEEECCCHHHHEEHHHCC
Q ss_conf 3270288504177887689999875313966996056453-0131899987-6412862034333142000000001006
Q gi|254780900|r 97 MRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAG-GIPIIRILKN-YVEYDEINRVYGIINGTCNYILSHMNNL 174 (438)
Q Consensus 97 ~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~g-giPii~~l~~-~l~~~~i~~i~GIlnGT~nyIL~~m~~~ 174 (438)
++..-||||.-+ .|.+=-.=.|+.+|+. ..=||= -.|+-+.-.. ++ |.++ || +
T Consensus 46 ~~~~GVvaASAG---NHAQGVA~AA~~~Gi~---a~IVMPE~aP~~Kv~AT~~y-GAEV-----iL-------------~ 100 (381)
T TIGR01127 46 QRKRGVVAASAG---NHAQGVALAAKVFGIK---AKIVMPEYAPLSKVKATKSY-GAEV-----IL-------------H 100 (381)
T ss_pred HCCCCEEEECCC---CHHHHHHHHHHHCCCC---CEEECCCCCHHHHHHHHHHC-CCEE-----EE-------------C
T ss_conf 134755775045---4378999998761877---46878876735789997626-9618-----98-------------0
Q ss_pred CCCHHHHHHHHH----HCCCCCCCCCCC---CCHHHHHHHHHHHHHHHHCCCCCCCC--CHHHH---HHHCCHHHHHHHH
Q ss_conf 877889988787----617615653223---21178999999999998188555310--00122---3204767403478
Q gi|254780900|r 175 GLSFQDCLEEAR----RQGYAEGDATFD---INGVDSSHKIAILSAIAFGIDTSVEG--VYCEG---ISNITLEDIRGAA 242 (438)
Q Consensus 175 g~~f~~al~~Aq----~lGyaE~DP~~D---i~G~Daa~Kl~ILa~~~~g~~~~~~~--v~~~g---I~~i~~~di~~a~ 242 (438)
|..|+||-+-|. +.|+.==+|=+| +.|.=+ |....+.-.+++|- +|+=| ||.|. -.+|
T Consensus 101 G~~~DEA~~~A~~~~~~~g~~fvHpF~D~~vmAGQGT------igLEi~ed~pd~D~viVPVGGGGLISGv~----~a~K 170 (381)
T TIGR01127 101 GADYDEAYALAEELAEEEGRVFVHPFDDEYVMAGQGT------IGLEIMEDLPDVDTVIVPVGGGGLISGVA----SAAK 170 (381)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCH------HHHHHHHCCCCCCEEEEEECCCCHHHHHH----HHHH
T ss_conf 8870789999999998609878740588778616748------99999964798137998417871287999----9998
Q ss_pred HCCCEEEEEEEE----------------------EECCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEE-------
Q ss_conf 719858741013----------------------313678356999986416773000366541689831131-------
Q gi|254780900|r 243 DFGYCIKFLAMA----------------------RRKGKGIIRYVYPVLLKYDSVMALVDGITNAVVIETNGL------- 293 (438)
Q Consensus 243 ~~g~~ikli~~~----------------------~~~~~~i~~~V~P~li~~~~~la~v~g~~Nai~i~~~~~------- 293 (438)
.+.=-+|-||+- .--.+|+..+- | =+-+-|+. -+-++..|.|.-+..
T Consensus 171 ~~~P~VkvIGV~aE~ap~m~~Sl~~Gk~~~v~~~~tiADGIaVk~-p--G~lTF~i~-k~~VD~~V~V~eeEIA~A~~~L 246 (381)
T TIGR01127 171 KLNPEVKVIGVEAEGAPSMVESLREGKIKAVESVDTIADGIAVKK-P--GDLTFNIV-KEYVDEVVAVDEEEIAKAILLL 246 (381)
T ss_pred HHCCCCEEEEEECCCCHHHHHHHHCCCEEEECCCCEEECCCEECC-C--CCCCHHHH-HHHCCCEEEECHHHHHHHHHHH
T ss_conf 728994799860278558999985199056045641415211637-8--87674789-9747970884737799999998
Q ss_pred ---EEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEEEE--CCCCCHHH
Q ss_conf ---0058972687666102068899999974177776556666783100234438853446532799992--48887489
Q gi|254780900|r 294 ---GKLTMTGPGAGGSATASAVLGDICSIAKTNTQKSVSWALGKESSSFSVIHCDGVYEEEKEYFIRLTI--RNFEGILD 368 (438)
Q Consensus 294 ---g~~~~~G~GAG~~~TAsaV~sDli~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yYLRl~v--~DkpGVLa 368 (438)
..++..|.||=+. +|||.+-++..++.+-...- -|-+.+..---++-..+-....-|.|+++ .|+||-|.
T Consensus 247 LEr~Ki~aEGAGA~gv---AA~L~~K~~~~kG~K~~~v~--SGGNID~~~l~~iI~kGL~~~GR~v~I~~~~~D~PG~L~ 321 (381)
T TIGR01127 247 LERAKIVAEGAGAVGV---AAVLEDKVDYVKGKKVAVVV--SGGNIDLNLLEKIILKGLVKSGRKVRIETVIPDRPGALY 321 (381)
T ss_pred HCCCCEEECCCHHHHH---HHHHHHHCCCCCCCEEEEEE--ECCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHH
T ss_conf 6077478827458999---99997540368982899998--547768667778865522205836999999823898669
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCC---CEEEEEEEEEECCHHHHHHHHHHHHCCCCCC
Q ss_conf 9999988669957888822677877---6135999921048899999999862383000
Q gi|254780900|r 369 KITSQMSDFNISLRLFSCPHQEENS---QEFSVFMITHKVSGKLIRDAIECFNGKSDAI 424 (438)
Q Consensus 369 ~It~ilak~~ISIesi~Q~~~~~~~---~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~ 424 (438)
+++...|+.+=+|-++... +...+ +.+.|.|.-+.--++-+++.++.|....|..
T Consensus 322 ~ll~~~A~~~aNi~~i~hD-R~~~~~~~G~a~v~~~LEt~g~~H~~ei~~~L~~~Gy~f 379 (381)
T TIGR01127 322 KLLEVIAEERANIVKIEHD-RLSKEIPPGFAKVELELETRGKEHLDEILKVLRDKGYEF 379 (381)
T ss_pred HHHHHHHHHCCCEEEEEEC-CCCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCEE
T ss_conf 9999999816978999973-757777867538999984088689999999997637544
No 128
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.06 E-value=0.06 Score=33.70 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=10.7
Q ss_pred HHHHHHHHHCCCEEEE
Q ss_conf 9999875313966996
Q gi|254780900|r 115 KDLALLAQKNNAILNF 130 (438)
Q Consensus 115 ~eL~~lA~~~gv~l~~ 130 (438)
+.|..+|+.+|+.|.|
T Consensus 126 ~dL~~lae~~~IPF~~ 141 (285)
T PRK06027 126 PDLRSLVESFGIPFHH 141 (285)
T ss_pred HHHHHHHHHCCCCEEE
T ss_conf 7899999986998288
No 129
>PRK07660 consensus
Probab=96.06 E-value=0.054 Score=34.02 Aligned_cols=185 Identities=16% Similarity=0.200 Sum_probs=92.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC-C---------------CC-C-------CCCCCH
Q ss_conf 6999982566789999999998999999739965999998268520-0---------------27-8-------877102
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI-D---------------RG-I-------DCLRYE 60 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k-~---------------~~-~-------~~~~~~ 60 (438)
=||+++|.|++|++++..+. ..|.++.+ .+++.+. . ++ + .+....
T Consensus 4 k~VaViGaG~MG~gIA~~~a--------~~G~~V~l---~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~ 72 (283)
T PRK07660 4 QKIVVIGAGQMGSGIAQVCA--------MAGYDVKV---QDLKQEQLDRGLAIITKNLARQVEKGRMKEEEKEATLNRLT 72 (283)
T ss_pred CEEEEECCCHHHHHHHHHHH--------HCCCCEEE---EECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
T ss_conf 88999896989999999999--------66981899---97988999999999999999998705899899999983587
Q ss_pred HCCCHHHHHCCCCCCEEEECCCCCCCC-HHHHHHHHHHC--CEE-EEEECHHHHHHHHHHHHHHHHH----CCCEEEEEC
Q ss_conf 207888984488998999864888851-13578888632--702-8850417788768999987531----396699605
Q gi|254780900|r 61 WFDDPLIMAGEADIDVFVELIGGEDYP-AYDAVRIALMR--GCH-VVTANKALIASHGKDLALLAQK----NNAILNFEA 132 (438)
Q Consensus 61 ~~~d~~~li~~~~IDvVVEliGg~~~p-A~~~i~~AL~~--Gkh-VVTANKallA~~g~eL~~lA~~----~gv~l~~ea 132 (438)
.++|...+ .+.|+|+|++ .|.. .+.-+.+-|+. ..+ +++.|---+. -.+|.+..+. -|..|+.-+
T Consensus 73 ~~~~~~~~---~~aDlViEav--~E~l~iK~~lf~~l~~~~~~~~IlaSNTS~l~--i~~ia~~~~~p~R~ig~HffnP~ 145 (283)
T PRK07660 73 VTLDLDCV---KEADLIIEAA--VEKMDIKKKIFANLDEIAPEHAILATNTSSLP--ITEIAAVTKRPEKVIGMHFMNPV 145 (283)
T ss_pred CCCCHHHH---CCCCEEEECC--CCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC--CHHHHHHCCCCHHCCCCCCCCCC
T ss_conf 76898997---6899999878--57544429999999964799718986588887--32556651782430466667885
Q ss_pred CCCCHHHH----------HHHHHHHHHCCCCEEEEEEECCCHHHHEEHHH-----------CCCCCHHHHHHHHHHCCCC
Q ss_conf 64530131----------89998764128620343331420000000010-----------0687788998878761761
Q gi|254780900|r 133 AVAGGIPI----------IRILKNYVEYDEINRVYGIINGTCNYILSHMN-----------NLGLSFQDCLEEARRQGYA 191 (438)
Q Consensus 133 sV~ggiPi----------i~~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~-----------~~g~~f~~al~~Aq~lGya 191 (438)
.++--+=| ++.+.+. ..++.+.-=+++-+-.||.+++. ++|..-.+.+..+-+.|+-
T Consensus 146 ~~m~LVEIv~g~~T~~~~~~~~~~~--~~~lgk~pV~v~d~pGFi~NRl~~~~~~ea~~lv~eGva~~e~iD~~~~~g~g 223 (283)
T PRK07660 146 PVMKLVEIIRGLATDDAVYETIEDI--TKKIGKVPVEVNDFPGFVSNRILLPMINEAIYTLYEGVATKEAIDEVMKLGMN 223 (283)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHH--HHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
T ss_conf 6572154569999979999999999--98759427998378973279878999999999998199999999998675779
Q ss_pred CC-CC--CCCCCHHHHHHHHH
Q ss_conf 56-53--22321178999999
Q gi|254780900|r 192 EG-DA--TFDINGVDSSHKIA 209 (438)
Q Consensus 192 E~-DP--~~Di~G~Daa~Kl~ 209 (438)
=| -| ..|+-|+|+.....
T Consensus 224 ~p~GPf~l~D~vGLD~~~~v~ 244 (283)
T PRK07660 224 HPMGPLTLADFIGLDTCLYIM 244 (283)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
T ss_conf 825698988664489999999
No 130
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=95.98 E-value=0.059 Score=33.72 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=38.3
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECC
Q ss_conf 5327999924888748999999886699578888226778776135999921048
Q gi|254780900|r 352 KEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVS 406 (438)
Q Consensus 352 ~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~ 406 (438)
....|-+.+.|+||.|+.|+++|++++++|.+-.-. -.++....++.+|..-.
T Consensus 790 ~~TvleV~a~DrpGLL~~I~~~f~~~~l~I~~AkI~--T~Gerv~DvFyVtd~~g 842 (862)
T PRK01759 790 EHTEMELFALDKAGLLAEVSQIFSELNLNLLNAKIT--TIGEKAEDFFILTNQQG 842 (862)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEC--CCCCEEEEEEEEECCCC
T ss_conf 848999996881789999999999879879898962--67854899999978997
No 131
>PRK03381 PII uridylyl-transferase; Provisional
Probab=95.95 E-value=0.14 Score=31.18 Aligned_cols=111 Identities=13% Similarity=0.118 Sum_probs=62.7
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCC-------CCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEE--EECCCCCH
Q ss_conf 5897268766610206889999997417777-------65566667831002344388534465327999--92488874
Q gi|254780900|r 296 LTMTGPGAGGSATASAVLGDICSIAKTNTQK-------SVSWALGKESSSFSVIHCDGVYEEEKEYFIRL--TIRNFEGI 366 (438)
Q Consensus 296 ~~~~G~GAG~~~TAsaV~sDli~i~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~yYLRl--~v~DkpGV 366 (438)
++..-+--|..|...-+..+|.+...+.... ................+-..+.+..+..|--+ .+.|+||.
T Consensus 643 ~f~V~~~~g~~~~~~~~~~~l~~al~~~l~~~~~l~~r~~~~~~~~~~~~~~~~prV~~d~~~s~~~TvlEV~a~DRpGL 722 (781)
T PRK03381 643 EFVVSPPFGSPPAAALLRQDLVRALDGDLDVLARLAKREADAAAAVPVTRTPAPPRVLWLDTASPDATVLEVRAADRAGL 722 (781)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEECCCHHH
T ss_conf 99971677897666899999999982653213454201001355654567999987998888888858999996881779
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHH
Q ss_conf 899999988669957888822677877613599992104889
Q gi|254780900|r 367 LDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGK 408 (438)
Q Consensus 367 La~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~ 408 (438)
|+.|+.+|.+++++|.+-.-. -..+....+|.+|....++
T Consensus 723 L~~Ia~~l~~~gl~I~~AkI~--T~Gerv~DvFyVtd~~g~k 762 (781)
T PRK03381 723 LARLTRALEGAGVDVRWAKVN--TLGSDAVDAFYVTEAAGGP 762 (781)
T ss_pred HHHHHHHHHHCCCEEEEEEEC--CCCCCEEEEEEEECCCCCC
T ss_conf 999999999879879887962--6886089999997799890
No 132
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase; InterPro: IPR006422 This group of sequences represent the small clade of dehydrogenases in gamma-proteobacteria which utilise NAD+ to oxidize erythrose-4-phosphate (E4P) to 4-phospho-erythronate, a precursor for the de novo synthesis of pyridoxine via 4-hydroxythreonine and D-1-deoxyxylulose . This enzyme activity appears to have evolved from glyceraldehyde-3-phosphate dehydrogenase, whose substrate differs only in the lack of one carbon relative to E4P. It is possible that some of the GAPDH enzymes may prove to be bifunctional in certain species.; GO: 0016491 oxidoreductase activity, 0051287 NAD binding.
Probab=95.95 E-value=0.0017 Score=44.63 Aligned_cols=187 Identities=20% Similarity=0.256 Sum_probs=117.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC------CC-----------CCCCHH--C----
Q ss_conf 999982566789999999998999999739965999998268520027------88-----------771022--0----
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRG------ID-----------CLRYEW--F---- 62 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~------~~-----------~~~~~~--~---- 62 (438)
||||=|||.+|+.+++-|.+..+. ..++|+++-+. .+..+ ++ .....+ -
T Consensus 1 RVA~NGfGRIGR~VlRAlyE~g~~------~~~~vVA~N~L--A~~~~~~~L~~yD~~HGRF~~~v~~d~d~l~v~~~~g 72 (334)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGKR------LEIEVVALNEL--ADQASMAHLLRYDTSHGRFAKEVKVDRDQLYVNDQNG 72 (334)
T ss_pred CEEEECCCCCCCEEEEEEECCCCC------CEEEEEEECCC--CCHHHHHHHHHHCCCCCCCCHHEEECCCEEEECCCCC
T ss_conf 933404762110003311038873------41489985010--2468999998716777705012000462788836677
Q ss_pred -CCHHHHHCCC----------CCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHH------HHH--HHHHHHHHHHHH
Q ss_conf -7888984488----------998999864888851135788886327028850417------788--768999987531
Q gi|254780900|r 63 -DDPLIMAGEA----------DIDVFVELIGGEDYPAYDAVRIALMRGCHVVTANKA------LIA--SHGKDLALLAQK 123 (438)
Q Consensus 63 -~d~~~li~~~----------~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKa------llA--~~g~eL~~lA~~ 123 (438)
.|.-.++..+ .+|+|.||+|-+. .++...+-|.+|-.-|.=... +-+ -||---.+|..+
T Consensus 73 eyD~i~vL~~~~~~~l~W~~L~VDlVL~C~G~Y~--~r~~g~~~~~AGA~~VLFS~P~ase~DlDaTivYGVN~~~L~a~ 150 (334)
T TIGR01532 73 EYDAIRVLHSSELEALPWRELGVDLVLDCTGVYG--SREQGERHIRAGAKRVLFSHPGASEADLDATIVYGVNQEDLSAE 150 (334)
T ss_pred CCCEEEEECCCCCCCCCHHHCCEEEEEECCCCCC--CHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCC
T ss_conf 7204787415886657813506008994476656--66889999873886344138887401266426850211023523
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf 39669960564530131899987641286203433314200000000100687788998878761761565322321178
Q gi|254780900|r 124 NNAILNFEAAVAGGIPIIRILKNYVEYDEINRVYGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVD 203 (438)
Q Consensus 124 ~gv~l~~easV~ggiPii~~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~D 203 (438)
+..-=-=++|.-.++|+||.|.+. .||=+||..=|=|-|.+..+ +|
T Consensus 151 ~~~VSNaSCTTNC~vP~~KlL~~A---------~G~e~~~iTTIHSaM~DQ~V-------------------------ID 196 (334)
T TIGR01532 151 HKIVSNASCTTNCIVPLIKLLDDA---------IGIESGTITTIHSAMNDQQV-------------------------ID 196 (334)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHH---------CCCCCEEEEEEEECCCCCCE-------------------------EE
T ss_conf 036755654111011064321012---------15330146666403468850-------------------------22
Q ss_pred HHHH-HHHHHHHHHCCCCCCCCCHHHHHHHCCHH
Q ss_conf 9999-99999998188555310001223204767
Q gi|254780900|r 204 SSHK-IAILSAIAFGIDTSVEGVYCEGISNITLE 236 (438)
Q Consensus 204 aa~K-l~ILa~~~~g~~~~~~~v~~~gI~~i~~~ 236 (438)
|.|. =+==.|-||-.-++.+.=.-+||+++-|+
T Consensus 197 AYH~eDLRRTRaA~QSiIPV~T~L~~GI~R~~P~ 230 (334)
T TIGR01532 197 AYHHEDLRRTRAASQSIIPVDTKLARGIERLFPE 230 (334)
T ss_pred CCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHH
T ss_conf 3474013444544122200445312116664043
No 133
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.91 E-value=0.056 Score=33.93 Aligned_cols=102 Identities=15% Similarity=0.116 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECC
Q ss_conf 20688999999741777765566667831002344388534465327999924888748999999886699578888226
Q gi|254780900|r 309 ASAVLGDICSIAKTNTQKSVSWALGKESSSFSVIHCDGVYEEEKEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPH 388 (438)
Q Consensus 309 AsaV~sDli~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~ 388 (438)
|.-+..-|.+...+. ....+.+++. ... .....+|=|.+.-.|.||+|++|+++|++++++|+.+.-+.
T Consensus 305 a~~~a~~l~~~l~~G---~i~nsVN~P~-----~~~---~~~~~~~Ri~~~h~N~Pg~l~~i~~~l~~~~~NI~~~~n~s 373 (409)
T PRK11790 305 GLEVAGKLVKYSDNG---STLSAVNFPE-----VSL---PEHPGGHRLLHIHENRPGVLTAINQIFAEQGINIAAQYLQT 373 (409)
T ss_pred HHHHHHHHHHHHHCC---CCCCCCCCCC-----CCC---CCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHCC
T ss_conf 999999999999669---8114402477-----567---77888706999807987589999999987699988986206
Q ss_pred CCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 778776135999921048899999999862383000473
Q gi|254780900|r 389 QEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRYS 427 (438)
Q Consensus 389 ~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~~ 427 (438)
+ ++.+=.++=.+.... ++++++|++++.+.+..
T Consensus 374 ~---~~~aY~i~D~~~~~~---~~~~~~l~~i~~vi~vR 406 (409)
T PRK11790 374 D---AEIGYVVIDVDADDS---EEALEALKAIPGTIRAR 406 (409)
T ss_pred C---CCEEEEEEECCCCCC---HHHHHHHHHCCCEEEEE
T ss_conf 7---765499997888885---99999998489889998
No 134
>KOG2663 consensus
Probab=95.91 E-value=0.025 Score=36.30 Aligned_cols=72 Identities=11% Similarity=0.181 Sum_probs=53.1
Q ss_pred HCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCE--EEEEEEEEECCHHHHHHHHHHHHCCCCCC
Q ss_conf 44653279999248887489999998866995788882267787761--35999921048899999999862383000
Q gi|254780900|r 349 EEEKEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQE--FSVFMITHKVSGKLIRDAIECFNGKSDAI 424 (438)
Q Consensus 349 ~~~~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~--~~IViiTh~~~e~~i~~ai~~i~~l~~v~ 424 (438)
+...++-+-..|-|+||||+.|+++||-.|-+|||+.--..+ .+.. .+||+ --+++.++++.++|++|=.|.
T Consensus 73 qr~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~te-vk~LsrmTIVl---~Gtd~VveQa~rQiedlVnV~ 146 (309)
T KOG2663 73 QRVKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTE-VKALSRMTIVL---QGTDGVVEQARRQIEDLVNVY 146 (309)
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCHHEEEECHH-HHHHHHCEEEE---ECCHHHHHHHHHHHHHHHHHH
T ss_conf 534001588883178228888888887615772131330044-45444415889---554789999999999764420
No 135
>pfam07994 NAD_binding_5 Myo-inositol-1-phosphate synthase. This is a family of myo-inositol-1-phosphate synthases. Inositol-1-phosphate catalyses the conversion of glucose-6- phosphate to inositol-1-phosphate, which is then dephosphorylated to inositol. Inositol phosphates play an important role in signal transduction.
Probab=95.88 E-value=0.018 Score=37.36 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=20.2
Q ss_pred EEEEEECC-CHHHHHHHHHHHHHHHH
Q ss_conf 69999825-66789999999998999
Q gi|254780900|r 5 LKVGVAGL-GTVGSALIRSIQKREGR 29 (438)
Q Consensus 5 ikIgiiG~-G~VG~~~~~~l~~~~~~ 29 (438)
|+|+|+|. |+|++.++.-+...+..
T Consensus 1 igV~lvG~~GnvaTT~v~Gi~a~r~g 26 (389)
T pfam07994 1 VGVALVGVGGNNASTLVAGIEANKKG 26 (389)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 96999538964999999999999818
No 136
>PRK04374 PII uridylyl-transferase; Provisional
Probab=95.62 E-value=0.2 Score=29.96 Aligned_cols=58 Identities=14% Similarity=0.121 Sum_probs=40.7
Q ss_pred CHHHCC--CCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEEC
Q ss_conf 853446--532799992488874899999988669957888822677877613599992104
Q gi|254780900|r 346 GVYEEE--KEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKV 405 (438)
Q Consensus 346 ~~~~~~--~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~ 405 (438)
.+.+.. ....+-+.+.|+||.|+.|+.+|++++|+|.+-.-- -.++....++.+|+.-
T Consensus 787 ~~~~~~s~~~Tvlev~a~DrpGLL~~I~~~~~~~~l~I~~AkI~--T~GerveDvFyvtd~~ 846 (869)
T PRK04374 787 EFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIA--TFGERAEDQFQITDEH 846 (869)
T ss_pred EEECCCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEEC--CCCCEEEEEEEEECCC
T ss_conf 98048988869999996882779999999999889879887963--6675089999997899
No 137
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.62 E-value=0.077 Score=32.91 Aligned_cols=33 Identities=12% Similarity=0.255 Sum_probs=12.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 279999248887489999998866995788882
Q gi|254780900|r 354 YFIRLTIRNFEGILDKITSQMSDFNISLRLFSC 386 (438)
Q Consensus 354 yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q 386 (438)
|-|+++.-|+||+.++||+.++++|-+|....|
T Consensus 10 ~IL~l~CPD~~GIVA~VS~~L~~~g~NI~e~~Q 42 (289)
T PRK13010 10 YVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQ 42 (289)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEECCC
T ss_conf 899998999886299999999978998807325
No 138
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.61 E-value=0.13 Score=31.45 Aligned_cols=184 Identities=13% Similarity=0.139 Sum_probs=86.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC---C-------------CC-C-------CCCCCHH
Q ss_conf 999982566789999999998999999739965999998268520---0-------------27-8-------8771022
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI---D-------------RG-I-------DCLRYEW 61 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k---~-------------~~-~-------~~~~~~~ 61 (438)
||+++|.|++|++++..+. ..|.++.+ .+++.+. . ++ + ......+
T Consensus 4 kV~ViGaG~MG~~IA~~~a--------~~G~~V~l---~D~~~e~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 72 (289)
T PRK09260 4 KIVVVGAGVMGRGIAYVFA--------SSGFQTTL---VDISQEQLASAQQEIESILEDGVALGKVTEAAAQAALARLSY 72 (289)
T ss_pred EEEEECCCHHHHHHHHHHH--------HCCCCEEE---EECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
T ss_conf 6999796887899999999--------68998899---979989999999999999999987179998999999955876
Q ss_pred CCCHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHC--CEE-EEEECHHHHHHHHHHHHHHHHH----CCCEEEEECCC
Q ss_conf 0788898448899899986488885113578888632--702-8850417788768999987531----39669960564
Q gi|254780900|r 62 FDDPLIMAGEADIDVFVELIGGEDYPAYDAVRIALMR--GCH-VVTANKALIASHGKDLALLAQK----NNAILNFEAAV 134 (438)
Q Consensus 62 ~~d~~~li~~~~IDvVVEliGg~~~pA~~~i~~AL~~--Gkh-VVTANKallA~~g~eL~~lA~~----~gv~l~~easV 134 (438)
+.|..+.+ .+.|+|+|++-. +...+.-+.+.|++ ..+ +++.|-.-+. -.+|.+..+. -|..|+.-+..
T Consensus 73 ~~dl~~a~--~~aDlViEav~E-~l~iK~~v~~~l~~~~~~~~IlaSNTSsl~--is~ia~~~~~p~R~ig~HffnP~~~ 147 (289)
T PRK09260 73 SLDLKEAV--AGADLLIEAVPE-KLEIKQAVFETADAHAPAEALIATNTSTLS--PTEIASATKRPERVIGMHFFNPVHK 147 (289)
T ss_pred CCCHHHHH--CCCCEEEECCCC-CHHHCHHHHHHHHHCCCCCCEEEECCCCCC--CHHHHHHCCCHHHEEEECCCCCHHH
T ss_conf 68889984--769999988868-632368999998606899808985588877--1145541598466264124774322
Q ss_pred C--------CHH--HHHHHHHHHHHCCCCEEEEEEECCCHHHHEEHHH-----------CCCC-CHHHHHHHHHH--CCC
Q ss_conf 5--------301--3189998764128620343331420000000010-----------0687-78899887876--176
Q gi|254780900|r 135 A--------GGI--PIIRILKNYVEYDEINRVYGIINGTCNYILSHMN-----------NLGL-SFQDCLEEARR--QGY 190 (438)
Q Consensus 135 ~--------ggi--Pii~~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~-----------~~g~-~f~~al~~Aq~--lGy 190 (438)
+ ..+ -++..+.+. ..++.+.-=+++=+-.||.+++. ++|. +.+++= .|-+ +|+
T Consensus 148 ~~lVEvv~g~~Ts~e~i~~~~~~--~~~lgk~pv~v~d~pGFi~NRl~~~~~~ea~~lv~eGva~~~dID-~~~~~~~g~ 224 (289)
T PRK09260 148 MKLVELVRGLETSDETVAVCREV--AEQLGKETVVVNEFPGFVTSRISALVGNEAMYMLQEGVATAEDID-KALRLGLNH 224 (289)
T ss_pred HEEEEECCCCCCCHHHHHHHHHH--HHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHHHCCCC
T ss_conf 12356458999999999999999--997498427856887529999899999999999981999999999-997865598
Q ss_pred CCCCC--CCCCCHHHHHHHHH
Q ss_conf 15653--22321178999999
Q gi|254780900|r 191 AEGDA--TFDINGVDSSHKIA 209 (438)
Q Consensus 191 aE~DP--~~Di~G~Daa~Kl~ 209 (438)
. --| ..|+-|+|+.....
T Consensus 225 p-~GPf~l~D~~GLD~~~~v~ 244 (289)
T PRK09260 225 P-MGPLELGDLVGLDTRLNNL 244 (289)
T ss_pred C-CCHHHHHHHHHHHHHHHHH
T ss_conf 1-3788999885388999999
No 139
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.58 E-value=0.054 Score=34.03 Aligned_cols=90 Identities=22% Similarity=0.266 Sum_probs=58.5
Q ss_pred CCEEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC-CCCCCCCCCCC------CHH-CCCHHHHHCCCC
Q ss_conf 726999982-566789999999998999999739965999998268-52002788771------022-078889844889
Q gi|254780900|r 3 GVLKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARD-KNIDRGIDCLR------YEW-FDDPLIMAGEAD 73 (438)
Q Consensus 3 k~ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~-~~k~~~~~~~~------~~~-~~d~~~li~~~~ 73 (438)
+|+||+|+| -|.-|..++++|..|. ++++..+..|. ..+.-.-..++ ..+ .-|..++ ...+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp---------~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~-~~~~ 70 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHP---------DVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKI-ELDE 70 (349)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC---------CEEEEEEECHHHCCCCHHHHCCCCCCCCCCCCCCCCHHHH-HCCC
T ss_conf 98159997788774899999986599---------7379996316645870687582423534554335774553-0156
Q ss_pred CCEEEECCCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 9899986488885113578888632702885
Q gi|254780900|r 74 IDVFVELIGGEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 74 IDvVVEliGg~~~pA~~~i~~AL~~GkhVVT 104 (438)
+|+|+=++ .++.+.+++...+++|+.||-
T Consensus 71 ~DvvFlal--Phg~s~~~v~~l~~~g~~VID 99 (349)
T COG0002 71 CDVVFLAL--PHGVSAELVPELLEAGCKVID 99 (349)
T ss_pred CCEEEEEC--CCHHHHHHHHHHHHCCCEEEE
T ss_conf 88899906--863688989999747994998
No 140
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.57 E-value=0.045 Score=34.54 Aligned_cols=51 Identities=14% Similarity=0.267 Sum_probs=37.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHH
Q ss_conf 99992488874899999988669957888822677877613599992104889
Q gi|254780900|r 356 IRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGK 408 (438)
Q Consensus 356 LRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~ 408 (438)
|-+...|+||-|+.||.+|.+++++|.+-.-.- ..+....++.+|+..-.+
T Consensus 4 lEv~~~DRpGLL~~itr~l~e~gL~I~~A~IsT--~Gera~DvFYVtD~~G~~ 54 (72)
T cd04926 4 LELRTEDRVGLLSDVTRVFRENGLTVTRAEIST--QGDMAVNVFYVTDANGNP 54 (72)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEE--CCCEEEEEEEEECCCCCC
T ss_conf 999869968689999999998791588999960--498898999998999899
No 141
>KOG2742 consensus
Probab=95.55 E-value=0.0089 Score=39.50 Aligned_cols=197 Identities=20% Similarity=0.180 Sum_probs=106.6
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC--CCCCCCCCCCCCHHCCCHHHHHCCCCCCEEE
Q ss_conf 98726999982566789999999998999999739965999998268--5200278877102207888984488998999
Q gi|254780900|r 1 MAGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARD--KNIDRGIDCLRYEWFDDPLIMAGEADIDVFV 78 (438)
Q Consensus 1 Msk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~--~~k~~~~~~~~~~~~~d~~~li~~~~IDvVV 78 (438)
|+- . ||++|.|-..+-++-.+ ++. .+++.++..|. .++.+.-..+-...|+..++++.+.++|.|+
T Consensus 1 m~P-g-v~v~GTg~~arv~iP~l-------~e~---~f~v~A~w~Rt~~ea~a~aa~~~v~~~t~~~deiLl~~~vdlv~ 68 (367)
T KOG2742 1 MSP-G-VGVFGTGIFARVLIPLL-------KEE---GFEVKAIWGRTKTEAKAKAAEMNVRKYTSRLDEILLDQDVDLVC 68 (367)
T ss_pred CCC-C-EEEECCCHHHHHHHHHH-------HHC---CCHHHHHHCHHHHHHHHHHHCCCHHHCCCCCHHHHCCCCCCEEE
T ss_conf 998-4-15741571476652465-------633---50076563414567777541332111055300544367744367
Q ss_pred ECCCCCCCCHHHHHHHHHHCCEEEEEECHH--------HH-HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHH-
Q ss_conf 864888851135788886327028850417--------78-87689999875313966996056453013189998764-
Q gi|254780900|r 79 ELIGGEDYPAYDAVRIALMRGCHVVTANKA--------LI-ASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILKNYV- 148 (438)
Q Consensus 79 EliGg~~~pA~~~i~~AL~~GkhVVTANKa--------ll-A~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~~~l- 148 (438)
-+. ....+++++.+|+..|||||-+--+ +. ..++++|..++..+-. =+|-+.+.++++
T Consensus 69 i~l--pp~~~~eI~~kal~~Gk~Vvcek~a~~~d~~k~~~~~~~s~~L~~lv~~~lr----------flp~f~~~k~~ie 136 (367)
T KOG2742 69 ISL--PPPLHAEIVVKALGIGKHVVCEKPATNLDAAKMVVALAYSPKLMSLVGHVLR----------FLPAFVTAKELIE 136 (367)
T ss_pred ECC--CCCCCEEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHCHHHHHHHHHHHH----------HHHHHHHHHHHHH
T ss_conf 516--8740104564023577407852677542245667877635478887645664----------0388899999997
Q ss_pred ---HCCCCEEEEEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCH--HHHHHHHHHHHHHHHCCCC---
Q ss_conf ---12862034333142000000001006877889988787617615653223211--7899999999999818855---
Q gi|254780900|r 149 ---EYDEINRVYGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDING--VDSSHKIAILSAIAFGIDT--- 220 (438)
Q Consensus 149 ---~~~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G--~Daa~Kl~ILa~~~~g~~~--- 220 (438)
.|+-+....-|= .|+.|++ .-+|.+ ||.. ..| +|...-+.=|+...||++-
T Consensus 137 ~i~~g~vv~~~~~v~---~~~l~~k----~~~W~~-------------~p~~-ggG~l~d~Gsh~Idl~~~L~G~~~~~~ 195 (367)
T KOG2742 137 EIYVGEVVRCDVRVD---RGRLFRK----SYNWKC-------------DPLM-GGGFLYDMGSHLIDLLTSLLGTPASVV 195 (367)
T ss_pred HCCCCCEEEEEEEEE---CCEECCC----CCCCCC-------------CCCC-CCCEEECCHHHHHHHHHHHHCCCHHHH
T ss_conf 336887045420330---5444166----776412-------------5656-885665035789999999858713442
Q ss_pred -------CCCCCHHHHHHHCCHHHHHHHH
Q ss_conf -------5310001223204767403478
Q gi|254780900|r 221 -------SVEGVYCEGISNITLEDIRGAA 242 (438)
Q Consensus 221 -------~~~~v~~~gI~~i~~~di~~a~ 242 (438)
...--.++||++|+..|+..-.
T Consensus 196 ~gl~~~~~~~~~ei~g~~~I~~~~~~~~~ 224 (367)
T KOG2742 196 HGLLSQRTRQPLEIEGIRRITLHDFCLFQ 224 (367)
T ss_pred HHHHHHHCCCCHHHCCCCEEEECCHHHCC
T ss_conf 31234303475433461002302121205
No 142
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=95.51 E-value=0.21 Score=29.94 Aligned_cols=197 Identities=18% Similarity=0.232 Sum_probs=100.0
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC-------------CCC-CC-------CCCCHHC
Q ss_conf 26999982566789999999998999999739965999998268520-------------027-88-------7710220
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI-------------DRG-ID-------CLRYEWF 62 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k-------------~~~-~~-------~~~~~~~ 62 (438)
.-+||++|.|++|+|++..+. ..|.++.+.-+.....++ +++ +. +.....+
T Consensus 313 i~~v~ViGaG~MG~GIA~~~a--------~aG~~V~l~D~~~e~l~~g~~~~~~~~~~~v~~g~~~~~~~~~~l~ri~~~ 384 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSA--------SKGVPVIMKDINQKALDLGMNEAAKLLNKQVERGRIDGLKMAGVLSTITPT 384 (715)
T ss_pred CCEEEEECCCCCHHHHHHHHH--------HCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
T ss_conf 627999787710799999999--------579957999789999999999999999999864899879999999568741
Q ss_pred CCHHHHHCCCCCCEEEECCCCCCCCH-HHHHHHHHH--CCEEEE-EECHHHHHHHHHHHHHHHHH----CCCEEEEECCC
Q ss_conf 78889844889989998648888511-357888863--270288-50417788768999987531----39669960564
Q gi|254780900|r 63 DDPLIMAGEADIDVFVELIGGEDYPA-YDAVRIALM--RGCHVV-TANKALIASHGKDLALLAQK----NNAILNFEAAV 134 (438)
Q Consensus 63 ~d~~~li~~~~IDvVVEliGg~~~pA-~~~i~~AL~--~GkhVV-TANKallA~~g~eL~~lA~~----~gv~l~~easV 134 (438)
+|+.++ .++|+|||++ .|... +.-+.+-|+ ...+.| ..|---+ .=.+|.+..+. -|..|+--+.+
T Consensus 385 ~~~~~l---~~~DlVIEAV--~E~l~~K~~vf~~l~~~~~~~aIlAsNTSsl--~i~~lA~~~~~Per~iG~HFfnP~~~ 457 (715)
T PRK11730 385 LDYAGF---KDVDVVVEAV--VENPKVKAAVLAEVEQKVREDTILASNTSTI--SISLLAKALKRPENFCGMHFFNPVHR 457 (715)
T ss_pred CCCHHH---CCCCEEEEEC--CCCHHHHHHHHHHHHHHCCCCEEEEECCCCC--CHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf 540243---3588899854--3658899999999986558753885157657--78999975168211565221488441
Q ss_pred CCHHHH----------HHHHHHHHHCCCCEEEEEEECCCHHHHEEHH-----------HCCCCCHHHHHHHHHH--CCCC
Q ss_conf 530131----------8999876412862034333142000000001-----------0068778899887876--1761
Q gi|254780900|r 135 AGGIPI----------IRILKNYVEYDEINRVYGIINGTCNYILSHM-----------NNLGLSFQDCLEEARR--QGYA 191 (438)
Q Consensus 135 ~ggiPi----------i~~l~~~l~~~~i~~i~GIlnGT~nyIL~~m-----------~~~g~~f~~al~~Aq~--lGya 191 (438)
+--+=| +.+..+. ..++.+.-=+.+-+-.||.++| .++|.+.++ +-.|.+ .|+.
T Consensus 458 m~LVEVv~g~~Ts~~t~~~~~~~--~~~lgK~pVvv~d~pGFi~NRil~~~~~ea~~l~~eGa~~~~-ID~a~~~~~G~p 534 (715)
T PRK11730 458 MPLVEVIRGEKTSDETIATVVAY--ASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQ-IDKVMEKQFGWP 534 (715)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--HHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHCCCCC
T ss_conf 64488816899999999999999--998198238982468605878999999999999987999999-999998747997
Q ss_pred -CCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf -565322321178999999999998188
Q gi|254780900|r 192 -EGDATFDINGVDSSHKIAILSAIAFGI 218 (438)
Q Consensus 192 -E~DP~~Di~G~Daa~Kl~ILa~~~~g~ 218 (438)
=|=--.|+-|+|++.+..-.-.-.|+.
T Consensus 535 mGP~~l~D~vGlDv~~~v~~~~~~~~~~ 562 (715)
T PRK11730 535 MGPAYLLDVVGIDTAHHAQAVMAEGFPD 562 (715)
T ss_pred CCHHHHHHHHCCHHHHHHHHHHHHHCCC
T ss_conf 7787887631608899999999864664
No 143
>TIGR00691 spoT_relA RelA/SpoT family protein; InterPro: IPR004811 The functions of Escherichia coli RelA and SpoT differ somewhat. RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homolog to SpoT and RelA appears responsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. ; GO: 0015969 guanosine tetraphosphate metabolic process.
Probab=95.47 E-value=0.12 Score=31.61 Aligned_cols=77 Identities=13% Similarity=0.146 Sum_probs=63.2
Q ss_pred HHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCC
Q ss_conf 344653279999248887489999998866995788882267787761359999210488999999998623830004
Q gi|254780900|r 348 YEEEKEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIR 425 (438)
Q Consensus 348 ~~~~~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~ 425 (438)
....+.++|++...|+.|+|++|++.|.+++++|.++.-....+ +....+-|.-.--..+.+-..+.+|++.+.+..
T Consensus 662 ~~~~f~~~I~~~~~~~~~~L~~l~~~i~~~~~ni~~~~~~~~K~-~~~~~~~~~~~~~~~~~L~~i~~~ik~~~~v~~ 738 (741)
T TIGR00691 662 KPQRFIVEIQIEALDRKGVLSDLTTAISENDSNIVSISTETKKD-KREAILNITVEIKDYKHLLKIMKKIKNVEDVID 738 (741)
T ss_pred CCCEEEEEEEEEEEHHHHHHHHHHHHHHCCCCEEEEEEEECCCC-CCEEEEEEEEEECCHHHHHHHHHHHCCCCCEEE
T ss_conf 86405889899861034689999999863872589700100258-836899999986087999999998516887588
No 144
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.45 E-value=0.13 Score=31.23 Aligned_cols=186 Identities=16% Similarity=0.171 Sum_probs=90.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC----------------CCC-CC--------CCCC
Q ss_conf 6999982566789999999998999999739965999998268520----------------027-88--------7710
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI----------------DRG-ID--------CLRY 59 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k----------------~~~-~~--------~~~~ 59 (438)
=||+++|.|++|++++..+. ..|.++.+. +++.+. .+. .. ....
T Consensus 4 ~~VaViGaG~MG~gIA~~~a--------~~G~~V~l~---D~~~~~l~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i 72 (288)
T PRK08293 4 KKVTVAGAGVLGSQIAFQTA--------FKGFDVTIY---DISEEALDAAKRRLAKLADRYVRDLHLTDEAFAAAAKNRI 72 (288)
T ss_pred CEEEEECCCHHHHHHHHHHH--------HCCCCEEEE---ECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
T ss_conf 78999897889999999999--------579928999---8988999999999999999999705999178999998077
Q ss_pred HHCCCHHHHHCCCCCCEEEECCCCCCCCH-HHHHHHHHHC--CEEEE-EECHHHHHHHHHHHHHHHHHC----CCEEEEE
Q ss_conf 22078889844889989998648888511-3578888632--70288-504177887689999875313----9669960
Q gi|254780900|r 60 EWFDDPLIMAGEADIDVFVELIGGEDYPA-YDAVRIALMR--GCHVV-TANKALIASHGKDLALLAQKN----NAILNFE 131 (438)
Q Consensus 60 ~~~~d~~~li~~~~IDvVVEliGg~~~pA-~~~i~~AL~~--GkhVV-TANKallA~~g~eL~~lA~~~----gv~l~~e 131 (438)
.+++|..+.+ .+.|+|+|++ .|... +.-+.+-|+. ..+.+ ..|-.-+ .-.+|.+..+.. |..|..-
T Consensus 73 ~~~~dl~~a~--~~aDlViEav--~E~l~iK~~lf~~le~~~~~~~IlaSNTSsl--~it~la~~~~~p~R~ig~HffnP 146 (288)
T PRK08293 73 TFTTDLAQAV--KDADLVIEAV--PEDPEIKGDFYEQLAEVAPEKTIFATNSSTL--LPSQFADATGRPEKFLALHFANH 146 (288)
T ss_pred CCCCCHHHHH--CCCCEEEECC--CCCHHHHHHHHHHHHHHCCCCEEEEECCCCC--CHHHHHHHCCCCHHEEEECCCCC
T ss_conf 3058989984--6699999978--0879999999999997467766998668767--65799886199223343033588
Q ss_pred CCCCCHHHH----------HHHHHHHHHCCCCEEEEEEEC-CCHHHHEEHHH-----------CCCCCHHHHHHHHHHCC
Q ss_conf 564530131----------899987641286203433314-20000000010-----------06877889988787617
Q gi|254780900|r 132 AAVAGGIPI----------IRILKNYVEYDEINRVYGIIN-GTCNYILSHMN-----------NLGLSFQDCLEEARRQG 189 (438)
Q Consensus 132 asV~ggiPi----------i~~l~~~l~~~~i~~i~GIln-GT~nyIL~~m~-----------~~g~~f~~al~~Aq~lG 189 (438)
+..+--+=| +..+.+. ..++.+.-=+++ -+-.||.++|. ++|..--+.+-.|-..|
T Consensus 147 ~~~m~LVEiv~g~~Ts~e~~~~~~~~--~~~lgk~pvvv~~d~pGFi~NRl~~~~~~Ea~~lv~eGva~~e~ID~a~~~~ 224 (288)
T PRK08293 147 IWKNNTAEIMGHPGTDPEVYETVVAF--AKAIGMVPIVLKKEQPGYILNSLLVPFLDAALALWAKGVADPETIDKTWMIA 224 (288)
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHH--HHHCCCEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHH
T ss_conf 34275264438999999999999999--9983998999857769840999999999999999991899999999867040
Q ss_pred CCCCC-C--CCCCCHHHHHHHHH
Q ss_conf 61565-3--22321178999999
Q gi|254780900|r 190 YAEGD-A--TFDINGVDSSHKIA 209 (438)
Q Consensus 190 yaE~D-P--~~Di~G~Daa~Kl~ 209 (438)
|--|- | ..|+-|+|+...+.
T Consensus 225 ~g~pmGPf~l~D~~GlD~~~~v~ 247 (288)
T PRK08293 225 TGAPMGPFGILDIIGLDTAYNIT 247 (288)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 59803789877774499999999
No 145
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.42 E-value=0.047 Score=34.40 Aligned_cols=67 Identities=15% Similarity=0.280 Sum_probs=41.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC--CCCCCHHCCCHHHHHCCCCCCEEEECC
Q ss_conf 69999825667899999999989999997399659999982685200278--877102207888984488998999864
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGI--DCLRYEWFDDPLIMAGEADIDVFVELI 81 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~--~~~~~~~~~d~~~li~~~~IDvVVEli 81 (438)
||||++|+|++|+++++-|.+. +....-..+++|+.++...+ ..+....+.|..+++++ .|+|+=++
T Consensus 1 MkIgfIG~GnMg~Aii~Gl~~~--------~~~~~~i~v~~r~~~~~~~l~~~~~~v~~~~~n~~~~~~--~dvi~LaV 69 (255)
T PRK06476 1 MRIGFIGTGAITEAMVTGLLSS--------PADVSEIIVSPRNAQIAARLAARFAKVRIAKDNQAVVDR--SDVVFLAV 69 (255)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--------CCCCCCEEEECCCHHHHHHHHHHCCCEEEECCHHHHHHH--CCEEEEEE
T ss_conf 9899986469999999999978--------899250889898989999999876955985788999851--88788861
No 146
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.42 E-value=0.077 Score=32.92 Aligned_cols=145 Identities=19% Similarity=0.212 Sum_probs=90.9
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC-CCCCHHCCCHHHHHCCCCCCEEEE
Q ss_conf 9872699998256678999999999899999973996599999826852002788-771022078889844889989998
Q gi|254780900|r 1 MAGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGID-CLRYEWFDDPLIMAGEADIDVFVE 79 (438)
Q Consensus 1 Msk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~-~~~~~~~~d~~~li~~~~IDvVVE 79 (438)
|+.+-+|-++|.- .|+-.+.-+. ..-..+++.++..+-.++.|... .-....+..++++-.+.+|-.||-
T Consensus 1 m~~pksVvV~Gtr-FGq~Ylaaf~--------~~~~~~eLaGiLaqGSeRSRaLAh~~GVply~~~eelpd~idiACVvV 71 (361)
T COG4693 1 MSDPKSVVVCGTR-FGQFYLAAFA--------AAPPRFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVV 71 (361)
T ss_pred CCCCCEEEEECCH-HHHHHHHHHC--------CCCCCCEEEHHHHCCCHHHHHHHHHHCCCCCCCHHHCCCCCCEEEEEE
T ss_conf 9987369995303-7799999852--------588776651043235477899999869863157745777787579997
Q ss_pred --C-CCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEE---CCCCCHHHHHHHHHHHHHCCCC
Q ss_conf --6-488885113578888632702885041778876899998753139669960---5645301318999876412862
Q gi|254780900|r 80 --L-IGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFE---AAVAGGIPIIRILKNYVEYDEI 153 (438)
Q Consensus 80 --l-iGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~e---asV~ggiPii~~l~~~l~~~~i 153 (438)
. .||. + .++.++-|++|.||+- .-.+.-....+|..+|++.|..+.-. --+-+|--.|+-.++.....++
T Consensus 72 rsai~Gg~-G--s~larall~RGi~Vlq-EHPl~p~di~~l~rlA~rqG~~y~vNTfYPhlpA~rrfi~~~rql~~~~~p 147 (361)
T COG4693 72 RSAIVGGQ-G--SALARALLARGIHVLQ-EHPLHPRDIQDLLRLAERQGRRYLVNTFYPHLPAVRRFIEYARQLHRRRGP 147 (361)
T ss_pred EEEEECCC-C--HHHHHHHHHCCCHHHH-HCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 30420687-2--7999999971327877-189887899999999998195788733477767899999999999985499
Q ss_pred EEEEE
Q ss_conf 03433
Q gi|254780900|r 154 NRVYG 158 (438)
Q Consensus 154 ~~i~G 158 (438)
.-++.
T Consensus 148 ~~vea 152 (361)
T COG4693 148 RFVEA 152 (361)
T ss_pred CEEEE
T ss_conf 76884
No 147
>pfam03807 F420_oxidored NADP oxidoreductase coenzyme F420-dependent.
Probab=95.42 E-value=0.015 Score=37.82 Aligned_cols=63 Identities=25% Similarity=0.274 Sum_probs=40.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC--CCCCCHHCCCHHHHHCCCCCCEEEEC
Q ss_conf 9999825667899999999989999997399659999982685200278--87710220788898448899899986
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGI--DCLRYEWFDDPLIMAGEADIDVFVEL 80 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~--~~~~~~~~~d~~~li~~~~IDvVVEl 80 (438)
|||++|+|++|+++++.|.++ |. ++..+.+|+.++.+.+ .......+.|..+++++. |+|+=+
T Consensus 1 KIg~IG~G~mg~ai~~~l~~~--------g~--~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--DvIila 65 (93)
T pfam03807 1 KIGIIGAGNMGEALARGLAAA--------GH--EVIIANSRNPEKAAALAEELGVGATAVSNEEAAEEA--DVVILA 65 (93)
T ss_pred CEEEECCHHHHHHHHHHHHHC--------CC--CCEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHCC--CEEEEE
T ss_conf 989997009999999999977--------99--612786487899999999819976458999997449--989999
No 148
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.42 E-value=0.14 Score=31.10 Aligned_cols=184 Identities=16% Similarity=0.203 Sum_probs=85.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC-C---------------CC-CC-------CCCCH
Q ss_conf 6999982566789999999998999999739965999998268520-0---------------27-88-------77102
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI-D---------------RG-ID-------CLRYE 60 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k-~---------------~~-~~-------~~~~~ 60 (438)
=||+++|.|++|++++..+. ..|.++.+ .+++.+. . ++ +. .....
T Consensus 4 ~~VaViGaG~mG~~IA~~~a--------~~G~~V~l---~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~ 72 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCA--------VAGYDVVM---VDISDEAVDRGLATITKSLDRLVKKGKMTEADKEAALARIT 72 (282)
T ss_pred CEEEEECCCHHHHHHHHHHH--------HCCCCEEE---EECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
T ss_conf 68999897889999999999--------57993899---97998999999999999999999708864266999995263
Q ss_pred HCCCHHHHHCCCCCCEEEECCCCCCCC-HHHHHHHHHHC---CEEEEEECHHHHHHHHHHHHHHHHHC----CCEEEEEC
Q ss_conf 207888984488998999864888851-13578888632---70288504177887689999875313----96699605
Q gi|254780900|r 61 WFDDPLIMAGEADIDVFVELIGGEDYP-AYDAVRIALMR---GCHVVTANKALIASHGKDLALLAQKN----NAILNFEA 132 (438)
Q Consensus 61 ~~~d~~~li~~~~IDvVVEliGg~~~p-A~~~i~~AL~~---GkhVVTANKallA~~g~eL~~lA~~~----gv~l~~ea 132 (438)
+++|..++ .+.|+|+|++- |.. .+.-+.+-|+. ---+++.|-.-+. -.+|.+..... |..|+.-+
T Consensus 73 ~~~dl~~~---~~aDlViEav~--E~l~iK~~vf~~le~~~~~~~IlaSnTSsl~--is~la~~~~~p~R~ig~HffnP~ 145 (282)
T PRK05808 73 GTTDLDDL---KDADLVIEAAV--ENMDIKKKIFAQLDEIAKPEAILATNTSSLS--ITELAAATKRPDKVIGMHFFNPV 145 (282)
T ss_pred CCCCHHHH---CCCCEEEECCC--CCHHHHHHHHHHHHHHCCCCCEEEECCCCCC--HHHHHHHCCCCHHHCCCCCCCCC
T ss_conf 66888896---75999998775--6345569999999955799848997588776--69999772992542055667872
Q ss_pred CCC--------CHHH--HHHHHHHHHHCCCCEEEEEEECCCHHHHEEHHH-----------CCCCCHHHHHHHHHHCCCC
Q ss_conf 645--------3013--189998764128620343331420000000010-----------0687788998878761761
Q gi|254780900|r 133 AVA--------GGIP--IIRILKNYVEYDEINRVYGIINGTCNYILSHMN-----------NLGLSFQDCLEEARRQGYA 191 (438)
Q Consensus 133 sV~--------ggiP--ii~~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~-----------~~g~~f~~al~~Aq~lGya 191 (438)
.++ .... ++..+.+. ..++-+.-=+++-+..||.+++. ++|..--+-+-.|-+.|+-
T Consensus 146 ~~~~lVEiv~g~~Ts~~~~~~~~~~--~~~lgk~pV~vkd~pGFi~NRl~~a~~~ea~~lv~eGva~~~dID~~~~~g~g 223 (282)
T PRK05808 146 PVMKLVEIIRGLATSDATHEAVEAL--AKKIGKTPVEVNNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCN 223 (282)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH--HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
T ss_conf 3371166727999999999999999--98749847998177750899999999999999998399999999998775789
Q ss_pred CC-CC--CCCCCHHHHHHHH
Q ss_conf 56-53--2232117899999
Q gi|254780900|r 192 EG-DA--TFDINGVDSSHKI 208 (438)
Q Consensus 192 E~-DP--~~Di~G~Daa~Kl 208 (438)
=| -| ..|+-|+|+....
T Consensus 224 ~~~GPf~l~D~~GLD~~~~v 243 (282)
T PRK05808 224 HPIGPLALADLIGLDTCLAI 243 (282)
T ss_pred CCCCHHHHHHHHHHHHHHHH
T ss_conf 85659998887528899999
No 149
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.37 E-value=0.059 Score=33.72 Aligned_cols=52 Identities=15% Similarity=0.265 Sum_probs=38.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHH
Q ss_conf 799992488874899999988669957888822677877613599992104889
Q gi|254780900|r 355 FIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGK 408 (438)
Q Consensus 355 YLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~ 408 (438)
-+.+...|+||.|++|+..|++.+++|.+-.-.- .++....++.+|+...++
T Consensus 2 vieV~~~DrpGLL~~i~~~l~~~~l~I~~A~I~T--~g~~v~D~FyV~d~~g~~ 53 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIAT--LGERAEDVFYVTDADGQP 53 (70)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEE--ECCEEEEEEEEECCCCCC
T ss_conf 8999978955599999999998893899999984--099899999998999892
No 150
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=95.35 E-value=0.021 Score=36.85 Aligned_cols=198 Identities=19% Similarity=0.261 Sum_probs=102.1
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC------C-------CCCCCC-CCHHCCCHHHHH
Q ss_conf 26999982566789999999998999999739965999998268520------0-------278877-102207888984
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI------D-------RGIDCL-RYEWFDDPLIMA 69 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k------~-------~~~~~~-~~~~~~d~~~li 69 (438)
|+||+++|.|.+|++++..|.++. .++.+ -.|+.+. . .++.++ +...++|..+.+
T Consensus 1 MmkI~ViGaGawGtAlA~~la~n~--------~~V~l---w~r~~~~~~~In~~~~n~~ylp~i~L~~nI~~t~dl~~~l 69 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAILLARNG--------HDVVL---WGRDPEHAAEINTDRENPRYLPGIKLPDNLRATSDLAEAL 69 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--------CEEEE---EEECHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHH
T ss_conf 988999898999999999999789--------97899---9838999999996498865689785899838978999998
Q ss_pred CCCCCCEEEECCCCCCCCHH---HHH---HHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
Q ss_conf 48899899986488885113---578---888632702885041778876899998753139669960564530131899
Q gi|254780900|r 70 GEADIDVFVELIGGEDYPAY---DAV---RIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRI 143 (438)
Q Consensus 70 ~~~~IDvVVEliGg~~~pA~---~~i---~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~ 143 (438)
++. |+||=++ |+. +++ +..++..+.+|++-|++-...+.-+.+ .
T Consensus 70 ~~a--d~iiiav-----Ps~~~~~~l~~i~~~i~~~~~li~~tKGle~~t~~~~se-----------------------i 119 (325)
T PRK00094 70 ADA--DLILVAV-----PSHAFREVLKQLKPLLRPDAPIVWATKGIEAGTGKLLSE-----------------------V 119 (325)
T ss_pred HCC--CEEEEEC-----CHHHHHHHHHHHHHHCCCCCEEEEEECCEECCCCCCHHH-----------------------H
T ss_conf 379--8499945-----769999999999864689974999765562488751999-----------------------9
Q ss_pred HHHHHHCCCCEEEEEEECCCH--HHH----EEHHH--CCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH----HHH
Q ss_conf 987641286203433314200--000----00010--068778899887876176156532232117899999----999
Q gi|254780900|r 144 LKNYVEYDEINRVYGIINGTC--NYI----LSHMN--NLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHKI----AIL 211 (438)
Q Consensus 144 l~~~l~~~~i~~i~GIlnGT~--nyI----L~~m~--~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl----~IL 211 (438)
+++-+. .+. =.++|+|-+ .=| .|.+. .......+-+++.-.-.|=-..++.|+-|.-.+-=+ +|-
T Consensus 120 i~~~l~-~~~--~~~~lsGP~~A~Eva~~~pt~~vias~~~~~~~~~~~lf~~~~frv~~s~D~iGvEl~galKNi~AIa 196 (325)
T PRK00094 120 AEEELP-DQA--PLAVLSGPSFAKEVAQGLPTALVIASTDEELAKEVQQLFHSPTFRVYTNDDVIGVELGGALKNVIAIA 196 (325)
T ss_pred HHHHCC-CCC--CEEEEECCCHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 999739-998--67998177429999808983999507999999999999679974799648700415789998999999
Q ss_pred HHHHHCCCCC--C-CCCHHHHHHHCCHHHHHHHHHCCCEEE
Q ss_conf 9998188555--3-100012232047674034787198587
Q gi|254780900|r 212 SAIAFGIDTS--V-EGVYCEGISNITLEDIRGAADFGYCIK 249 (438)
Q Consensus 212 a~~~~g~~~~--~-~~v~~~gI~~i~~~di~~a~~~g~~ik 249 (438)
+-++-|.... . ..+..+|+.+ ..++++.+|....
T Consensus 197 ~Gi~~gl~~G~N~~aalitrg~~E----m~~l~~~~g~~~~ 233 (325)
T PRK00094 197 AGISDGLGLGDNARAALITRGLAE----MTRLGVALGANPE 233 (325)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHH----HHHHHHHHCCCCC
T ss_conf 999977169901899999999999----9999999589834
No 151
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=95.31 E-value=0.17 Score=30.51 Aligned_cols=60 Identities=17% Similarity=0.277 Sum_probs=41.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCH----HHHHHHHHHH
Q ss_conf 9999248887489999998866995788882267787761359999210488----9999999986
Q gi|254780900|r 356 IRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSG----KLIRDAIECF 417 (438)
Q Consensus 356 LRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e----~~i~~ai~~i 417 (438)
+.+...|+||.+++|++.|.+.+++|..-.-.- .+ +....++.++....+ ..++..-+.|
T Consensus 3 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~I~T-~~-~~~~D~F~V~d~~g~~~~~~~~~~l~~~L 66 (70)
T cd04873 3 VEVYAPDRPGLLADITRVLADLGLNIHDARIST-TG-ERALDVFYVTDSDGRPLDPERIARLEEAL 66 (70)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEE-CC-CEEEEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 999968978899999999988795077999996-49-98999999988996939999999999999
No 152
>pfam02629 CoA_binding CoA binding domain. This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.
Probab=95.30 E-value=0.092 Score=32.38 Aligned_cols=90 Identities=13% Similarity=0.084 Sum_probs=60.3
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEEECCC
Q ss_conf 72699998256678999999999899999973996599999826852002788771022078889844889989998648
Q gi|254780900|r 3 GVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFVELIG 82 (438)
Q Consensus 3 k~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVVEliG 82 (438)
+.-||+|+|.|+.|+++.... .... .+.+..+.+.++.+... .......+++..++.++.++|+.|=++
T Consensus 2 ~~~~v~liG~g~lG~al~~~~-------~~~~--~~~i~~vfdv~p~~~G~-~i~gipv~~~l~~~~~~~~idiaii~V- 70 (96)
T pfam02629 2 KDTKVAVIGASGLGIQGLYHF-------IQLL--GYGIKMVFGVNPRKGGT-EVGGIPVYKSVDELEEDTGVDVAVITV- 70 (96)
T ss_pred CCCEEEEECCCCCHHHHHHHH-------HHHH--CCCEEEEEECCCCCCCC-EECCEEEECCHHHHHHCCCCCEEEEEE-
T ss_conf 977499999898278887768-------8771--48618998069242775-888998431087774155887899994-
Q ss_pred CCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 8885113578888632702885
Q gi|254780900|r 83 GEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 83 g~~~pA~~~i~~AL~~GkhVVT 104 (438)
....+.+.+.++.++|...+-
T Consensus 71 -P~~~a~~~~~~~v~~GIk~i~ 91 (96)
T pfam02629 71 -PAPFAQEAIDELVDAGIKGIV 91 (96)
T ss_pred -CHHHHHHHHHHHHHCCCCEEE
T ss_conf -789989999999986998999
No 153
>TIGR01761 thiaz-red thiazolinyl imide reductase; InterPro: IPR010091 This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclised to a thiazoline ring containing an imide double bond. Examples include yersiniabactin and pyochelin. Yersiniabactin is a virulence factor secreted by Yersinia pestis in iron-deficient microenvironments, in order to scavenge ferric ions . .
Probab=95.29 E-value=0.29 Score=28.94 Aligned_cols=188 Identities=18% Similarity=0.211 Sum_probs=120.6
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCCCCC-CCCCHHCCCHHHHHCCCCCCEEE
Q ss_conf 872699998256678999999999899999973--996599999826852002788-77102207888984488998999
Q gi|254780900|r 2 AGVLKVGVAGLGTVGSALIRSIQKREGRFKDLD--QHSFVVSAISARDKNIDRGID-CLRYEWFDDPLIMAGEADIDVFV 78 (438)
Q Consensus 2 sk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~--g~~i~i~~i~~r~~~k~~~~~-~~~~~~~~d~~~li~~~~IDvVV 78 (438)
+++-+|-++|.= .|.-.+.-+....+.+..+- -..+++.+++++=-++.|... --+..+|..++++-.+.||=.||
T Consensus 1 ~~~~~vlv~G~~-FG~~Yl~A~~~~~~lWaarPahl~r~~L~GlLAqGS~RSR~LA~~lGvpLy~~ve~lp~~~~~ACvv 79 (378)
T TIGR01761 1 SKKQSVLVCGTR-FGEVYLAAFAAAPRLWAARPAHLERFELAGLLAQGSERSRALAHRLGVPLYSEVEELPDDIDIACVV 79 (378)
T ss_pred CCCCEEEEEECC-HHHHHHHHHCCCHHHHHCCCCCCCCCEEEEEEHHCCHHHHHHHHHHCCCCCCCHHHCCCCCCEEEEE
T ss_conf 998579996166-6789999726785574136343677324411001036899999980984106710046887555888
Q ss_pred -E--CCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEEC---CCCCHHHHHHHHHHH--HHC
Q ss_conf -8--64888851135788886327028850417788768999987531396699605---645301318999876--412
Q gi|254780900|r 79 -E--LIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEA---AVAGGIPIIRILKNY--VEY 150 (438)
Q Consensus 79 -E--liGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~ea---sV~ggiPii~~l~~~--l~~ 150 (438)
- ..|| ++ -++.++-|++|.||+- .=.+.-....+|.++|++.|..+.-.+ -+=||--.|+..+++ ...
T Consensus 80 vRSa~~Gg-~G--~~LA~aLL~RGi~VLq-EHPl~p~d~~~L~~lA~~~Gr~Y~vNTFYPh~PAv~~Fi~~~~q~rr~~~ 155 (378)
T TIGR01761 80 VRSAIVGG-KG--SELARALLKRGIHVLQ-EHPLHPEDIAELLRLAERQGRRYLVNTFYPHLPAVRRFIEYARQLRRAAR 155 (378)
T ss_pred EEEEEECC-CC--HHHHHHHHHCCCEEEE-CCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 52253179-72--5899999856751563-28988778999999999709866420677873378999999999999974
Q ss_pred CCCEEEEEEECCCHHHHEEHHHCCCCCHH--HHHHHHHH--CCCCCCCC-CCCCCH-HHHHH
Q ss_conf 86203433314200000000100687788--99887876--17615653-223211-78999
Q gi|254780900|r 151 DEINRVYGIINGTCNYILSHMNNLGLSFQ--DCLEEARR--QGYAEGDA-TFDING-VDSSH 206 (438)
Q Consensus 151 ~~i~~i~GIlnGT~nyIL~~m~~~g~~f~--~al~~Aq~--lGyaE~DP-~~Di~G-~Daa~ 206 (438)
.++.-|+. ||.- | +-|+ |.|..+-. =-||=.|| ++|..+ -|.+-
T Consensus 156 ~~p~~v~a----t~g~------Q--l~ys~LD~~~~~LgG~GtfaC~~p~~l~~~~~~~~~~ 205 (378)
T TIGR01761 156 KKPAFVEA----TTGV------Q--LLYSTLDILARALGGEGTFACVGPLSLESASVGDLSD 205 (378)
T ss_pred CCCCEEEE----HHHH------H--HHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHH
T ss_conf 78978984----0026------8--9999999999984788414421551113366775023
No 154
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=95.25 E-value=0.15 Score=30.85 Aligned_cols=89 Identities=17% Similarity=0.207 Sum_probs=51.3
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC--CCCCCHHCCCHHHHHCCCCCCEEEECC
Q ss_conf 269999825667899999999989999997399659999982685200278--877102207888984488998999864
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGI--DCLRYEWFDDPLIMAGEADIDVFVELI 81 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~--~~~~~~~~~d~~~li~~~~IDvVVEli 81 (438)
+++||++|+|++|+.++.-|.+... .+.+-+.+++|+.++.+.+ ..+.. .++|..+..... |+|+=+.
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~-------~~~~~I~v~~~~~e~~~~l~~~~g~~-~~~~~~~~~~~a--dvv~Lav 70 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGA-------LPPEEIIVTNRSEEKRAALAAEYGVV-TTTDNQEAVEEA--DVVFLAV 70 (266)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-------CCCCEEEEECCCHHHHHHHHHHCCCC-CCCCHHHHHHHC--CEEEEEE
T ss_conf 9658998468899999999996689-------98023898379999999999984985-568679887408--9899984
Q ss_pred CCCCCCHHHHHHHHHH---CCEEEEEE
Q ss_conf 8888511357888863---27028850
Q gi|254780900|r 82 GGEDYPAYDAVRIALM---RGCHVVTA 105 (438)
Q Consensus 82 Gg~~~pA~~~i~~AL~---~GkhVVTA 105 (438)
-.....+.+ ..|+ .+|+||+-
T Consensus 71 --KPq~~~~vl-~~l~~~~~~~lvISi 94 (266)
T COG0345 71 --KPQDLEEVL-SKLKPLTKDKLVISI 94 (266)
T ss_pred --CHHHHHHHH-HHHHCCCCCCEEEEE
T ss_conf --827689999-973235688879997
No 155
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=95.25 E-value=0.15 Score=30.90 Aligned_cols=117 Identities=19% Similarity=0.151 Sum_probs=68.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC--------CCCHHCCCHHHHHCCCCCCE
Q ss_conf 6999982566789999999998999999739965999998268520027887--------71022078889844889989
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDC--------LRYEWFDDPLIMAGEADIDV 76 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~--------~~~~~~~d~~~li~~~~IDv 76 (438)
|++-+.|+|+||...++.+.++ ..+++++.-+++..|.-. ++ .....+++....+.-..-++
T Consensus 3 ~~vvqyGtG~vGv~air~l~ak---------pe~elvgawv~s~ak~Gk-dlgelagl~dlgV~a~~~~~avlAtl~~~~ 72 (350)
T COG3804 3 LRVVQYGTGSVGVAAIRGLLAK---------PELELVGAWVHSAAKSGK-DLGELAGLPDLGVIATNSIDAVLATLADAV 72 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHCC---------CCCCEEEEEECCCCCCCC-CHHHHCCCCCCEEEEECCCCCCEECCCCCE
T ss_conf 3058962555779999999708---------897168999517400130-178764888851686523222000266631
Q ss_pred EEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHH------HHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 9986488885113578888632702885041778------8768999987531396699605645
Q gi|254780900|r 77 FVELIGGEDYPAYDAVRIALMRGCHVVTANKALI------ASHGKDLALLAQKNNAILNFEAAVA 135 (438)
Q Consensus 77 VVEliGg~~~pA~~~i~~AL~~GkhVVTANKall------A~~g~eL~~lA~~~gv~l~~easV~ 135 (438)
+...+ .|..+-+.+.|.+|++||+.--.+- -+.-....++|.++|..-++-+-..
T Consensus 73 ~y~~~----~~~~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn~Tl~gtGI~ 133 (350)
T COG3804 73 IYAPL----LPSVDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGNATLHGTGIG 133 (350)
T ss_pred EEECC----CCHHHHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHCHHHHHHHCCCCEEEECCCC
T ss_conf 56102----61299999999758706615853347786796786555789985387468832668
No 156
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.29 Score=28.84 Aligned_cols=100 Identities=11% Similarity=0.176 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCH--HHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEE
Q ss_conf 610206889999997417777-655666678310023443885--34465327999924888748999999886699578
Q gi|254780900|r 306 SATASAVLGDICSIAKTNTQK-SVSWALGKESSSFSVIHCDGV--YEEEKEYFIRLTIRNFEGILDKITSQMSDFNISLR 382 (438)
Q Consensus 306 ~~TAsaV~sDli~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~yYLRl~v~DkpGVLa~It~ilak~~ISIe 382 (438)
..-..+....+++...+.+.. .......++...+...+-..+ +.....+++-+...|+||-|+.++++|+++++||.
T Consensus 741 ~dr~~~~~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~ 820 (867)
T COG2844 741 EDRRAALRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLH 820 (867)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEE
T ss_conf 25788889999999856887876445667655411478812546565777448999967865379999999874556401
Q ss_pred EEEECCCCCCCCEEEEEEEEEECCH
Q ss_conf 8882267787761359999210488
Q gi|254780900|r 383 LFSCPHQEENSQEFSVFMITHKVSG 407 (438)
Q Consensus 383 si~Q~~~~~~~~~~~IViiTh~~~e 407 (438)
+-.-.-- ++....++++|.....
T Consensus 821 ~AkItT~--GErveD~F~vt~~~~~ 843 (867)
T COG2844 821 SAKITTF--GERVEDVFIVTDADGQ 843 (867)
T ss_pred EEEECCC--CCCCEEEEEEECCCCC
T ss_conf 3253034--6531258999635555
No 157
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.17 E-value=0.064 Score=33.51 Aligned_cols=72 Identities=14% Similarity=0.083 Sum_probs=40.9
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC-CCCCCCCC-CCCCHHCCCHHHHHCCCCCCEEE
Q ss_conf 98726999982566789999999998999999739965999998268-52002788-77102207888984488998999
Q gi|254780900|r 1 MAGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARD-KNIDRGID-CLRYEWFDDPLIMAGEADIDVFV 78 (438)
Q Consensus 1 Msk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~-~~k~~~~~-~~~~~~~~d~~~li~~~~IDvVV 78 (438)
|.+..||+++|||++|+++++-|.+... ...+-..++.++ .++...+. -.....++|..+++.+ .|+|+
T Consensus 1 m~~~~kI~fIG~GnMg~Aii~gll~~~~-------~~~~~i~v~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~--~d~Ii 71 (245)
T PRK07634 1 MLTKHRILFIGAGRMAEAIFSGLLKTSK-------EYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTS--VDTIV 71 (245)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCC-------CCCCEEEEECCCCHHHHHHHHHHCCCEECCCHHHHHHH--CCEEE
T ss_conf 9999919998758999999999997799-------99605999699999999999997197422777999855--99999
Q ss_pred ECC
Q ss_conf 864
Q gi|254780900|r 79 ELI 81 (438)
Q Consensus 79 Eli 81 (438)
=++
T Consensus 72 lav 74 (245)
T PRK07634 72 LAM 74 (245)
T ss_pred EEE
T ss_conf 998
No 158
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.16 E-value=0.071 Score=33.18 Aligned_cols=199 Identities=17% Similarity=0.244 Sum_probs=102.2
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC-----------C--CCCCCC-CCCHHCCCHHHHH
Q ss_conf 2699998256678999999999899999973996599999826852-----------0--027887-7102207888984
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKN-----------I--DRGIDC-LRYEWFDDPLIMA 69 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~-----------k--~~~~~~-~~~~~~~d~~~li 69 (438)
+.+|+++|.|.+|++++..+.+|. .++. +-.|+.+ . -.++.+ +...+++|..+.+
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng--------~~V~---lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~ 69 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNG--------HEVR---LWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEAL 69 (329)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--------CEEE---EEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 961899817837999999999669--------8469---99628999999973476701059962886322246899997
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHH---HHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 488998999864888851135788---88632702885041778876899998753139669960564530131899987
Q gi|254780900|r 70 GEADIDVFVELIGGEDYPAYDAVR---IALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILKN 146 (438)
Q Consensus 70 ~~~~IDvVVEliGg~~~pA~~~i~---~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~~ 146 (438)
++ .|+++-++. ...-.++++ ..+..+..+|++-|++--..+.-+.+..++.
T Consensus 70 ~~--ad~iv~avP--s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~---------------------- 123 (329)
T COG0240 70 DG--ADIIVIAVP--SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEE---------------------- 123 (329)
T ss_pred HC--CCEEEEECC--HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHH----------------------
T ss_conf 22--999999787--5789999998764336787499974465588765199999997----------------------
Q ss_pred HHHCCCCEEEEEEECCCHH------HHEEHH--HCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH--H--HHHH-
Q ss_conf 6412862034333142000------000001--0068778899887876176156532232117899999--9--9999-
Q gi|254780900|r 147 YVEYDEINRVYGIINGTCN------YILSHM--NNLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHKI--A--ILSA- 213 (438)
Q Consensus 147 ~l~~~~i~~i~GIlnGT~n------yIL~~m--~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl--~--ILa~- 213 (438)
|..+. -++|+|-+= =.-|.+ ..+...+.+.++++-..-|=-..++.|+-|.-.+-=+ . |=+-
T Consensus 124 -l~~~~----~~vLSGPs~A~EVa~g~pta~~vas~d~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi 198 (329)
T COG0240 124 -LPDNP----IAVLSGPSFAKEVAQGLPTAVVVASNDQEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGI 198 (329)
T ss_pred -CCCCE----EEEEECCCHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_conf -39981----8999786079998668981799952899999999998479967997047513558989999999999899
Q ss_pred ---HHHCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCEEE
Q ss_conf ---981885553100012232047674034787198587
Q gi|254780900|r 214 ---IAFGIDTSVEGVYCEGISNITLEDIRGAADFGYCIK 249 (438)
Q Consensus 214 ---~~~g~~~~~~~v~~~gI~~i~~~di~~a~~~g~~ik 249 (438)
+.||..- ..-+-++|+.++ -++...+|...+
T Consensus 199 ~dGlg~G~Na-kaalitrGL~Em----~rlg~~lG~~~~ 232 (329)
T COG0240 199 ADGLGLGDNA-KAALITRGLAEM----TRLGVALGAKPE 232 (329)
T ss_pred HHHHHCCHHH-HHHHHHHHHHHH----HHHHHHHCCCCC
T ss_conf 9886457437-999999679999----999999689962
No 159
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.13 E-value=0.023 Score=36.67 Aligned_cols=89 Identities=19% Similarity=0.181 Sum_probs=50.4
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC-CCCCCHHCCCHHHHHCCCCCCEEEE
Q ss_conf 987269999825667899999999989999997399659999982685200278-8771022078889844889989998
Q gi|254780900|r 1 MAGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGI-DCLRYEWFDDPLIMAGEADIDVFVE 79 (438)
Q Consensus 1 Msk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~-~~~~~~~~~d~~~li~~~~IDvVVE 79 (438)
|.| |||++|||++|+++++-|.+... ....-..+.+|+..+.+.. ......+++|..+++++ .|+|+=
T Consensus 1 M~k--kI~fIG~GnMg~Aii~Gl~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--~Dii~L 69 (272)
T PRK12491 1 MNK--QIGFIGCGNMGIAMIGGMINKNI-------VSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANS--ADILIL 69 (272)
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHCCC-------CCCCEEEEECCCHHHHHHHHHHCCCEEECCHHHHHHH--CCEEEE
T ss_conf 998--69998567999999999997889-------8967699969799999999997197886687999731--999999
Q ss_pred CCCCCCCCH--HH---HHHHHHHCCEEEEE
Q ss_conf 648888511--35---78888632702885
Q gi|254780900|r 80 LIGGEDYPA--YD---AVRIALMRGCHVVT 104 (438)
Q Consensus 80 liGg~~~pA--~~---~i~~AL~~GkhVVT 104 (438)
++ .|- .+ -+...+...+.||+
T Consensus 70 aV----KP~~~~~vl~~l~~~~~~~~lviS 95 (272)
T PRK12491 70 SI----KPDLYSSVINQIKDQIKNDVIVVT 95 (272)
T ss_pred EE----CHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 95----778999999998655269918999
No 160
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=95.10 E-value=0.15 Score=30.83 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=37.7
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEE
Q ss_conf 53279999248887489999998866995788882267787761359999210
Q gi|254780900|r 352 KEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHK 404 (438)
Q Consensus 352 ~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~ 404 (438)
...-|-+.+.|+||.|+.|+++|++++++|.+-.-. -.++....++.+|+.
T Consensus 813 ~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~--T~Gerv~DvFyVtd~ 863 (894)
T PRK00275 813 PVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIA--TLGERVEDVFFITDA 863 (894)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEC--CCCCEEEEEEEEECC
T ss_conf 848999995880769999999999889879888963--547608999999679
No 161
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.09 E-value=0.19 Score=30.20 Aligned_cols=58 Identities=22% Similarity=0.337 Sum_probs=41.1
Q ss_pred CCHHHCCCCEE--EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEE
Q ss_conf 88534465327--9999248887489999998866995788882267787761359999210
Q gi|254780900|r 345 DGVYEEEKEYF--IRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHK 404 (438)
Q Consensus 345 ~~~~~~~~~yY--LRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~ 404 (438)
..+++..+..| |-+...|+||.|+.|+++|++++++|.+-.-- -.++..+.++.+|..
T Consensus 836 V~idn~~S~~~TviEV~a~DRPGLL~~I~~~l~~~~l~I~sAkIa--T~Gerv~DvFyVtd~ 895 (934)
T PRK05092 836 VTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA--TYGERAVDVFYVTDL 895 (934)
T ss_pred EEEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEC--CCCCEEEEEEEEECC
T ss_conf 998258988758999995880789999999999889779998962--557628999999789
No 162
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=95.07 E-value=0.13 Score=31.24 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=44.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCC
Q ss_conf 7999924888748999999886699578888226778776135999921048899999999862383
Q gi|254780900|r 355 FIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKS 421 (438)
Q Consensus 355 YLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~ 421 (438)
-|-.++.|+||-|+.|..+|++++|+++.+-.--.+ ++.+-+++- -.+++.+++.|+...
T Consensus 71 VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~e--k~KAlli~r-----~ed~d~~~~aLed~g 130 (142)
T COG4747 71 VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTE--KQKALLIVR-----VEDIDRAIKALEDAG 130 (142)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEEC--CCEEEEEEE-----HHHHHHHHHHHHHCC
T ss_conf 899981588870889999874148672014565303--733799998-----457788999999759
No 163
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=95.06 E-value=0.052 Score=34.12 Aligned_cols=70 Identities=21% Similarity=0.260 Sum_probs=44.1
Q ss_pred CCCCE--EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC-CCCCCCCCC-CHHCCCHHHHHCCCCCCE
Q ss_conf 98726--99998256678999999999899999973996599999826852-002788771-022078889844889989
Q gi|254780900|r 1 MAGVL--KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKN-IDRGIDCLR-YEWFDDPLIMAGEADIDV 76 (438)
Q Consensus 1 Msk~i--kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~-k~~~~~~~~-~~~~~d~~~li~~~~IDv 76 (438)
|++++ ||+|+|+|.+|.++++-|.+ .+...+|.++ +++.+ ........- ..++++..+.+. +.|+
T Consensus 1 ~~~~~f~~I~IiGlGLIGgSlA~alk~--------~~~~~~I~g~-d~~~~~l~~A~~~g~id~~~~~~~e~~~--~~Dl 69 (307)
T PRK07502 1 MSAPLFDRVALIGLGLIGSSLARAIRR--------QGLAGEIVGA-ARSAETRARARELGLGDRVTTSAAEAVK--GADL 69 (307)
T ss_pred CCCCCCCEEEEEEECHHHHHHHHHHHH--------CCCCCEEEEE-ECCHHHHHHHHHCCCCCHHCCCHHHHHC--CCCE
T ss_conf 985645668999278799999999985--------4998579998-4999999999986997511277766404--5897
Q ss_pred EEECC
Q ss_conf 99864
Q gi|254780900|r 77 FVELI 81 (438)
Q Consensus 77 VVEli 81 (438)
||=++
T Consensus 70 Iilat 74 (307)
T PRK07502 70 VILCV 74 (307)
T ss_pred EEEEC
T ss_conf 99917
No 164
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.05 E-value=0.13 Score=31.41 Aligned_cols=188 Identities=16% Similarity=0.201 Sum_probs=89.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC-------------CCC-C-------CCCCCHHCC
Q ss_conf 6999982566789999999998999999739965999998268520-------------027-8-------877102207
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI-------------DRG-I-------DCLRYEWFD 63 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k-------------~~~-~-------~~~~~~~~~ 63 (438)
=|||++|.|++|+|++..+. ..|.++.+.-+.....++ .++ + ...+..+++
T Consensus 4 ~~VaViGaGtMG~gIA~~~a--------~aG~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~g~~~~~~~~~~~~ri~~~~ 75 (503)
T PRK08268 4 ATVAVIGAGAMGAGIAQVAA--------QAGHTVLLYDARAGAAAAARDGIAATLAKLVEKGKLTAEQAEAALARLRPVE 75 (503)
T ss_pred CEEEEECCCHHHHHHHHHHH--------HCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEEC
T ss_conf 78999796889999999999--------3899089997998999999999999999999769999889999984747417
Q ss_pred CHHHHHCCCCCCEEEECCCCCCCC-HHHHHHHHHHC--CEEEE-EECHHHHHHHHHHHHHHHHHC----CCEEEEECCCC
Q ss_conf 888984488998999864888851-13578888632--70288-504177887689999875313----96699605645
Q gi|254780900|r 64 DPLIMAGEADIDVFVELIGGEDYP-AYDAVRIALMR--GCHVV-TANKALIASHGKDLALLAQKN----NAILNFEAAVA 135 (438)
Q Consensus 64 d~~~li~~~~IDvVVEliGg~~~p-A~~~i~~AL~~--GkhVV-TANKallA~~g~eL~~lA~~~----gv~l~~easV~ 135 (438)
|..++ .+.|+|||++ .|.. .+.-+.+.|++ ..+.| ..|-.-+. =.+|.+..+.. |..|+.-+.++
T Consensus 76 ~l~~l---~~aDlVIEAV--~E~l~~K~~vf~~l~~~~~~~~IlASNTSsL~--it~iA~~~~~PeR~iG~HFfnP~~~m 148 (503)
T PRK08268 76 ALADL---ADCDLVVEAI--VERLDVKQALFAQLEAIVSDDCILATNTSSLS--ITAIAAALKHPERVAGLHFFNPVPLM 148 (503)
T ss_pred CHHHH---CCCCEEEECC--CCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC--HHHHHHHCCCCCEEEEEEECCCCCCC
T ss_conf 78897---5799999936--06789999999999854798857984177677--99999746984407887715872446
Q ss_pred CHHHH----------HHHHHHHHHCCCCEEEEEEECCCHHHHEEHHH-----------CCCCCHHHHHHHHHHC--CCC-
Q ss_conf 30131----------89998764128620343331420000000010-----------0687788998878761--761-
Q gi|254780900|r 136 GGIPI----------IRILKNYVEYDEINRVYGIINGTCNYILSHMN-----------NLGLSFQDCLEEARRQ--GYA- 191 (438)
Q Consensus 136 ggiPi----------i~~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~-----------~~g~~f~~al~~Aq~l--Gya- 191 (438)
--+=| +....+. ..++-+.-=+.+-+-.||.++|. ++|..--+-+-.|-+. |+-
T Consensus 149 ~LVEVV~g~~Ts~e~v~~~~~~--~~~lGK~pV~v~d~pGFi~NRi~~~~~~EA~~l~eeGvA~~e~ID~a~r~~~G~pm 226 (503)
T PRK08268 149 KLVEVVSGLATDPAVADALYAL--ARRWGHTPVRAKDTPGFIVNHAGRPYYTEALRVLGEGVADFATIDAILREAAGFRM 226 (503)
T ss_pred EEEEEECCCCCCHHHHHHHHHH--HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC
T ss_conf 0488807999999999999999--99829804895578982088775489999999998289999999999996789975
Q ss_pred CCCCCCCCCHHHHHHHHH
Q ss_conf 565322321178999999
Q gi|254780900|r 192 EGDATFDINGVDSSHKIA 209 (438)
Q Consensus 192 E~DP~~Di~G~Daa~Kl~ 209 (438)
=|=-..|+-|+|++...+
T Consensus 227 GPfel~DliGlDv~~~v~ 244 (503)
T PRK08268 227 GPFELMDLTGLDVSHPVM 244 (503)
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 888887664216889999
No 165
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=95.02 E-value=0.073 Score=33.11 Aligned_cols=93 Identities=18% Similarity=0.209 Sum_probs=60.9
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC-CCCCCCHHCCCHHHHHCCCCCCEEEEC
Q ss_conf 8726999982566789999999998999999739965999998268520027-887710220788898448899899986
Q gi|254780900|r 2 AGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRG-IDCLRYEWFDDPLIMAGEADIDVFVEL 80 (438)
Q Consensus 2 sk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~-~~~~~~~~~~d~~~li~~~~IDvVVEl 80 (438)
.+.-+++|+|+|+.|+++++-- .+ . ...++++++.|.|+.+-.. +.--...-.++..+.+.+.+|++-|=+
T Consensus 82 ~~~~~v~lvGaGnLG~AL~~y~-----gf-~--~~gf~Iva~FD~dp~kiG~~i~gi~V~~i~~L~~~i~~~~i~iaIia 153 (211)
T PRK05472 82 DKTTNVALVGAGNLGRALLNYN-----GF-K--KRGFKIVAAFDVDPEKVGTKIGGIPVYHIDELEEVIKENDIEIAILT 153 (211)
T ss_pred CCCCEEEEECCCHHHHHHHHCC-----CH-H--HCCCEEEEEECCCHHHCCCEECCEEEECHHHHHHHHHHHCCCEEEEE
T ss_conf 9975089988877999998487-----62-3--18978999974897885988388387349999999998199389995
Q ss_pred CCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 488885113578888632702885
Q gi|254780900|r 81 IGGEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 81 iGg~~~pA~~~i~~AL~~GkhVVT 104 (438)
+ +...|-+.+....++|..-+.
T Consensus 154 V--P~~~AQ~vad~Lv~aGIk~Il 175 (211)
T PRK05472 154 V--PAEAAQEVADRLVEAGIKGIL 175 (211)
T ss_pred C--CHHHHHHHHHHHHHHCCEEEE
T ss_conf 5--768899999999981983999
No 166
>PRK03059 PII uridylyl-transferase; Provisional
Probab=94.96 E-value=0.16 Score=30.68 Aligned_cols=51 Identities=14% Similarity=0.272 Sum_probs=37.3
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEE
Q ss_conf 65327999924888748999999886699578888226778776135999921
Q gi|254780900|r 351 EKEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITH 403 (438)
Q Consensus 351 ~~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh 403 (438)
.....|-+.+.|+||.|+.|+++|.+++++|.+-.-. -..+....++.+|.
T Consensus 785 ~~~TvlEV~a~DrpGLL~~I~~~l~~~~l~I~~AkI~--T~Gerv~DvFyV~g 835 (857)
T PRK03059 785 GQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKIN--TLGERVEDVFLLDG 835 (857)
T ss_pred CCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEC--CCCCEEEEEEEECC
T ss_conf 8748999995881779999999999889779898963--64761899999859
No 167
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC; InterPro: IPR014308 Members of this protein are the accessory protein XdhC, found in baceria, that is responsible for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products..
Probab=94.91 E-value=0.18 Score=30.34 Aligned_cols=81 Identities=27% Similarity=0.326 Sum_probs=53.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEEEECCCCC-CCCCC-----CCCCHHCC---CHHHHHCCCCC
Q ss_conf 699998256678999999999899999973996-5999998268520-02788-----77102207---88898448899
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHS-FVVSAISARDKNI-DRGID-----CLRYEWFD---DPLIMAGEADI 74 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~-i~i~~i~~r~~~k-~~~~~-----~~~~~~~~---d~~~li~~~~I 74 (438)
..|.|+|.|+||+++++.|. ..+ ++|..|=.|+..- ..... --....++ .|.+.+..---
T Consensus 116 ~~v~lFGAGHVG~ALv~~La----------~lP~~~~~WvD~Re~~F~P~~~p~~~~~gV~~~~~~H~P~Pe~~v~~aP~ 185 (270)
T TIGR02964 116 PHVVLFGAGHVGRALVRALA----------PLPECRVTWVDSREEEFYPEDIPLALIDGVAPLATDHSPEPEAEVAEAPP 185 (270)
T ss_pred CEEEEECCCHHHHHHHHHHC----------CCCCEEEEEEECCHHHCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHCCC
T ss_conf 81799867718889999861----------69957999863715554874322025477523016888887999983799
Q ss_pred --CEEEECCCCCCCCH--HHHHHHHHHCC
Q ss_conf --89998648888511--35788886327
Q gi|254780900|r 75 --DVFVELIGGEDYPA--YDAVRIALMRG 99 (438)
Q Consensus 75 --DvVVEliGg~~~pA--~~~i~~AL~~G 99 (438)
-.+| +| .++ + ++++.++|+++
T Consensus 186 ~s~~lv-lT--HdH-aLD~~L~~~iL~R~ 210 (270)
T TIGR02964 186 GSYFLV-LT--HDH-ALDLELCEAILARG 210 (270)
T ss_pred CCEEEE-EE--CCH-HHHHHHHHHHHCCC
T ss_conf 965999-60--585-89999999996259
No 168
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.90 E-value=0.037 Score=35.17 Aligned_cols=90 Identities=10% Similarity=0.155 Sum_probs=49.3
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC-CCCC-CCCCCHHCCCHHHHHCCCCCCEEEEC
Q ss_conf 726999982566789999999998999999739965999998268520-0278-87710220788898448899899986
Q gi|254780900|r 3 GVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI-DRGI-DCLRYEWFDDPLIMAGEADIDVFVEL 80 (438)
Q Consensus 3 k~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k-~~~~-~~~~~~~~~d~~~li~~~~IDvVVEl 80 (438)
++++|+++|||++|+++++-|.+... ....-..+.+|+... .+.+ .......+.|..+++.+. |+|+=+
T Consensus 2 ~mm~I~fIG~GnMg~Aii~gl~~~~~-------~~~~~i~v~~r~~~~~~~~l~~~~~v~~~~~~~~~~~~~--diI~La 72 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANV-------VKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDA--NILFLA 72 (279)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-------CCCCEEEEECCCCHHHHHHHHHHHCCEEECCHHHHHHHC--CEEEEE
T ss_conf 97889998768999999999997879-------997579997898499999999971966637779998449--999995
Q ss_pred CCCCCCCH--HHH---HHHHHHCCEEEEEE
Q ss_conf 48888511--357---88886327028850
Q gi|254780900|r 81 IGGEDYPA--YDA---VRIALMRGCHVVTA 105 (438)
Q Consensus 81 iGg~~~pA--~~~---i~~AL~~GkhVVTA 105 (438)
+ .|. .+. +...+..++.||+-
T Consensus 73 V----KP~~~~~v~~~i~~~~~~~~~iISi 98 (279)
T PRK07679 73 M----KPKDVAEALTPFKEYIHNNVLIISL 98 (279)
T ss_pred C----CHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 2----7899999999987545899299997
No 169
>PRK05007 PII uridylyl-transferase; Provisional
Probab=94.86 E-value=0.098 Score=32.20 Aligned_cols=55 Identities=16% Similarity=0.295 Sum_probs=39.5
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECC
Q ss_conf 465327999924888748999999886699578888226778776135999921048
Q gi|254780900|r 350 EEKEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVS 406 (438)
Q Consensus 350 ~~~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~ 406 (438)
....-.+-+.+.|+||.|+.|+++|++++++|.+-.-. -.++....++.+|....
T Consensus 802 s~~~TviEv~a~DrpGLL~~I~~~f~~~~l~I~~AKIs--T~GerveDvFyVtd~~g 856 (881)
T PRK05007 802 TDRKSFMELIALDQPGLLARVGKIFADLGISLHGAKIT--TIGERVEDLFILATADG 856 (881)
T ss_pred CCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEC--CCCCEEEEEEEEECCCC
T ss_conf 88738999985880679999999999889879898962--54764899999988997
No 170
>PRK07431 aspartate kinase; Provisional
Probab=94.79 E-value=0.19 Score=30.19 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=46.4
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCEEEEEECCC--CCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCC
Q ss_conf 99248887489999998866995788882267--7877613599992104889999999986238300
Q gi|254780900|r 358 LTIRNFEGILDKITSQMSDFNISLRLFSCPHQ--EENSQEFSVFMITHKVSGKLIRDAIECFNGKSDA 423 (438)
Q Consensus 358 l~v~DkpGVLa~It~ilak~~ISIesi~Q~~~--~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v 423 (438)
..+.|+||+-++|=+.|++.+|+++-++|... ..+.....+ |..+++.++..+.+.++++..-
T Consensus 445 ~~vpD~PGiAa~iF~~la~~~inVDMIvQn~~~~~~~~~~tdi---sFTv~~~d~~~a~~~l~~~~~~ 509 (594)
T PRK07431 445 RNVPDRPGMAASIFSALAEANISVDMIVQSQRCRIDGVPTRDI---SFTVPKDDREAAQKALAPLAAK 509 (594)
T ss_pred ECCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEE---EEECCHHHHHHHHHHHHHHHHH
T ss_conf 3799997479999899987697278998567544689985118---9971588999999999999876
No 171
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=94.68 E-value=0.13 Score=31.37 Aligned_cols=59 Identities=19% Similarity=0.270 Sum_probs=39.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCC
Q ss_conf 9999248887489999998866995788882267787761359999210488999999998623830
Q gi|254780900|r 356 IRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSD 422 (438)
Q Consensus 356 LRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~ 422 (438)
|-+.++++||.|++++++|++++|+|..+.-.+..+ .....+ ++.+| +.|.+.|+...+
T Consensus 4 lSVFlENk~GrL~~v~~~L~~~~InI~AlsiaDt~d-fgilRl-ivddp------~~A~~~L~~~Gf 62 (66)
T cd04908 4 LSVFLENKPGRLAAVTEILSEAGINIRALSIADTSE-FGILRL-IVSDP------DKAKEALKEAGF 62 (66)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC-CCEEEE-EECCH------HHHHHHHHHCCC
T ss_conf 899961796459999999987899789987213668-658999-94898------999999998797
No 172
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=94.68 E-value=0.28 Score=29.04 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=28.2
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
Q ss_conf 26999982566789999999998999999739965999998268520
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI 50 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k 50 (438)
-.+++|-|||+||+..++.|.+ .| .++++|+|.+...
T Consensus 38 g~~vaIQGfGnVG~~aA~~l~e--------~G--akvVaVsD~~G~i 74 (254)
T cd05313 38 GKRVAISGSGNVAQYAAEKLLE--------LG--AKVVTLSDSKGYV 74 (254)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--------CC--CEEEEEECCCCEE
T ss_conf 9999998977999999999997--------79--9799998578508
No 173
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.54 E-value=0.1 Score=32.10 Aligned_cols=198 Identities=16% Similarity=0.140 Sum_probs=89.5
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC----------------CC----CCCCCCH
Q ss_conf 987269999825667899999999989999997399659999982685200----------------27----8877102
Q gi|254780900|r 1 MAGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNID----------------RG----IDCLRYE 60 (438)
Q Consensus 1 Msk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~----------------~~----~~~~~~~ 60 (438)
|++.=+||++|+|++|+|++..+.. .|.++.+ .|.+.+.. .+ .......
T Consensus 4 m~~Ik~VaVIGaG~MG~giAa~~a~--------~G~~V~l---~D~~~~a~~~~~~~i~~~~~~l~~~~~~~~~~~~~l~ 72 (321)
T PRK07066 4 ITDIKTFAAIGSGVIGSGWVARALA--------HGLDVVA---WDPAPGAEAALRANVANAWPALERQGLAPGASPARLR 72 (321)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH--------CCCEEEE---EECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 2578879998887888999999994--------7985999---9698889999999999999999866899631696501
Q ss_pred HCCCHHHHHCCCCCCEEEECCCCCCCCH-HHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf 2078889844889989998648888511-357888863270288504177887689999875313966996056453013
Q gi|254780900|r 61 WFDDPLIMAGEADIDVFVELIGGEDYPA-YDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIP 139 (438)
Q Consensus 61 ~~~d~~~li~~~~IDvVVEliGg~~~pA-~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiP 139 (438)
++++..+.+. +.|.|+|.+ .|... +.-+ +.+|-+.+..+ +.+ ||=-.|+|
T Consensus 73 ~~~~l~~av~--~aD~ViEav--pE~l~lK~~l---------------------f~~ld~~~~~~-aIi---ASnTS~l~ 123 (321)
T PRK07066 73 FVATIEACVA--DADFIQESA--PEREALKLEL---------------------HERISRAAKPD-AII---ASSTSGLL 123 (321)
T ss_pred CCCCHHHHHC--CCCEEEECC--EECHHHHHHH---------------------HHHHHHHCCCC-CEE---EECCCCCC
T ss_conf 4688899863--599899877--6659999999---------------------99999767988-678---52576578
Q ss_pred HHHHHHHHHH-CCCCEEEEEEECCCHHHHEEHHHCC----CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 1899987641-2862034333142000000001006----8778899887876176156532232117899999999999
Q gi|254780900|r 140 IIRILKNYVE-YDEINRVYGIINGTCNYILSHMNNL----GLSFQDCLEEARRQGYAEGDATFDINGVDSSHKIAILSAI 214 (438)
Q Consensus 140 ii~~l~~~l~-~~~i~~i~GIlnGT~nyIL~~m~~~----g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa~~ 214 (438)
+-... ..+. .+++.-. ==||---=-=|=+.-.. ...++.+..-.+.+|-.----..|+.|+=+-|=+.-|-|.
T Consensus 124 is~l~-~~~~~peR~i~~-HfFNP~~lmPLVEVV~g~~Ts~~tv~~a~~~~~~iGk~PV~v~ke~pGFi~NRL~~al~rE 201 (321)
T PRK07066 124 PTDFY-ARATHPERCVVG-HPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWRE 201 (321)
T ss_pred HHHHH-HHCCCCCEEEEE-EECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99998-736997026876-1058753254244428999979999999999998199788992778425999999999999
Q ss_pred HHCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCEEE
Q ss_conf 81885553100012232047674034787198587
Q gi|254780900|r 215 AFGIDTSVEGVYCEGISNITLEDIRGAADFGYCIK 249 (438)
Q Consensus 215 ~~g~~~~~~~v~~~gI~~i~~~di~~a~~~g~~ik 249 (438)
|+. ..-+|+ .|++||..|-..|.-+|
T Consensus 202 A~~-------Lv~eGv--As~edID~a~~~G~GlR 227 (321)
T PRK07066 202 ALH-------LVNEGV--ATTGEIDDAIRFGAGIR 227 (321)
T ss_pred HHH-------HHHCCC--CCHHHHHHHHHHCCCCC
T ss_conf 999-------998189--99999999998089998
No 174
>PRK13243 glyoxylate reductase; Reviewed
Probab=94.53 E-value=0.29 Score=28.87 Aligned_cols=11 Identities=36% Similarity=0.271 Sum_probs=6.0
Q ss_pred HHHHCCEEEEE
Q ss_conf 88632702885
Q gi|254780900|r 94 IALMRGCHVVT 104 (438)
Q Consensus 94 ~AL~~GkhVVT 104 (438)
+|-++|..|..
T Consensus 85 ~a~~~gI~V~n 95 (333)
T PRK13243 85 EATKRGIYVTN 95 (333)
T ss_pred HHHHCCCEEEE
T ss_conf 99969978996
No 175
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=94.48 E-value=0.25 Score=29.36 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=52.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCCEEEECCC
Q ss_conf 79999248887489999998866995788882267787761359999210488999999998623830004735766267
Q gi|254780900|r 355 FIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRYSCVICIEN 434 (438)
Q Consensus 355 YLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~~~~IRIE~ 434 (438)
.+-+.+++|||-|++.++.|+++||+|..+..-+. +++.-+=|+... -+.|-..|+.-.|+.+...++-+|=
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt---~dFGIiRmvV~~-----~d~A~~~Lee~gF~Vr~~dVlaVEm 76 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADT---GDFGIIRMVVDR-----PDEAHSVLEEAGFTVRETDVLAVEM 76 (142)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCC---CCCCEEEEECCC-----HHHHHHHHHHCCCEEEEEEEEEEEE
T ss_conf 89987507864499999999976986588873036---675369997088-----5899999987793898624899981
No 176
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.47 E-value=0.21 Score=29.89 Aligned_cols=60 Identities=8% Similarity=0.047 Sum_probs=39.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHH
Q ss_conf 999924888748999999886699578888226778776135999921048899999999862
Q gi|254780900|r 356 IRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFN 418 (438)
Q Consensus 356 LRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~ 418 (438)
++++=.|+||+.+.++++||+|+++|--+-|---++ .....+.-.--.+.......+++.
T Consensus 2 Itv~G~DrpGi~a~v~~~La~~~~~IlDI~Q~vi~~---~l~l~~lv~ip~~~~~~~l~k~L~ 61 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHG---RLSLGILVQIPDSADSEALLKDLL 61 (75)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEEEEHHHCCC---EEEEEEEEEECCCCCHHHHHHHHH
T ss_conf 899779988789999999987799089625550647---577999998078534689999999
No 177
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.37 E-value=0.16 Score=30.71 Aligned_cols=123 Identities=22% Similarity=0.267 Sum_probs=64.6
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEEECCCC
Q ss_conf 26999982566789999999998999999739965999998268520027887710220788898448899899986488
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFVELIGG 83 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVVEliGg 83 (438)
|=||.++|+|.-|.++++.|.++ |.. +. +.|.+.............+.+...+.. .++|+||=- .|
T Consensus 3 ~KkvlV~GlG~SG~s~a~~L~~~--------g~~--v~-~~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~vv~S-PG 68 (418)
T PRK00683 3 LQRVVVLGLGVTGKSVARFLAQK--------GVY--VI-GVDNSLEALQSCPYIHERYLEGAEEFP--EQVDLVVRS-PG 68 (418)
T ss_pred CCEEEEEEECHHHHHHHHHHHHC--------CCE--EE-EECCCHHHHHHCCHHHHHCCCCHHHCC--CCCCEEEEC-CC
T ss_conf 86699980888799999999978--------298--99-982981454546145554056233242--349899989-98
Q ss_pred CCCCHHHHHHHHHHCCEEEEEECHHH------------HH---HHH-----HHHHHHHHHCCCEEEEECCCCC--HHHHH
Q ss_conf 88511357888863270288504177------------88---768-----9999875313966996056453--01318
Q gi|254780900|r 84 EDYPAYDAVRIALMRGCHVVTANKAL------------IA---SHG-----KDLALLAQKNNAILNFEAAVAG--GIPII 141 (438)
Q Consensus 84 ~~~pA~~~i~~AL~~GkhVVTANKal------------lA---~~g-----~eL~~lA~~~gv~l~~easV~g--giPii 141 (438)
+. |...++..|.++|..|++ .=.+ ++ .+| .-+..+.++.|. .+.+|| |.|++
T Consensus 69 i~-~~~p~~~~a~~~~i~i~s-eiel~~~~~~~~~~~~IaITGTNGKTTTt~ll~~iL~~~g~----~~~~~GNIG~p~l 142 (418)
T PRK00683 69 IK-PYHPWVEAAVALKIPVVT-DIQLAFQTPEFQRYPSLGITGSTGKTTTILFLEHLLRTLGI----PAFAMGNIGLPIL 142 (418)
T ss_pred CC-CCCHHHHHHHHCCCCCCC-HHHHHHHHHHHCCCCEEEEECCCCCEEHHHHHHHHHHHCCC----CCEEEECCCHHHH
T ss_conf 59-988999999986997540-79999742441479879997689866099999999986799----8188803465777
Q ss_pred HHHHH
Q ss_conf 99987
Q gi|254780900|r 142 RILKN 146 (438)
Q Consensus 142 ~~l~~ 146 (438)
..+.+
T Consensus 143 ~~~~~ 147 (418)
T PRK00683 143 DGMQQ 147 (418)
T ss_pred HHHCC
T ss_conf 64325
No 178
>PRK07431 aspartate kinase; Provisional
Probab=94.30 E-value=0.27 Score=29.13 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=30.0
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHH
Q ss_conf 24888748999999886699578888226778776135999921048899999999862
Q gi|254780900|r 360 IRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFN 418 (438)
Q Consensus 360 v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~ 418 (438)
....|||-+++=+.|+++||+|+-+.. ++-...++ ..+.+.+.|++.|.
T Consensus 358 M~~~~GVAarmF~aLa~~gINI~mISt-----SEikIS~v-----I~~~d~~kAv~alH 406 (594)
T PRK07431 358 IMGRPGIAAQMFDTLAEAGINIRMIST-----SEVKVSCV-----IDAEDGDKAIRALS 406 (594)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEEC-----CCCEEEEE-----ECHHHHHHHHHHHH
T ss_conf 677826999999999878998799982-----57379999-----80889999999999
No 179
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=94.17 E-value=0.057 Score=33.83 Aligned_cols=63 Identities=10% Similarity=0.113 Sum_probs=41.1
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEEC-CHHHHHHHHHHHH
Q ss_conf 32799992488874899999988669957888822677877613599992104-8899999999862
Q gi|254780900|r 353 EYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKV-SGKLIRDAIECFN 418 (438)
Q Consensus 353 ~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~-~e~~i~~ai~~i~ 418 (438)
++-+-..=+|+||+.|.|++.||+++++|..+.|---+ +..+..+...-. ........-+.+.
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~---~~ftm~~lV~~~~~~~d~~~lr~~l~ 66 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMD---GFFTMIMLVDISKEVVDFAALRDELA 66 (90)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCEEEHHHHHHH---HHCEEEEEECCCHHHCCHHHHHHHHH
T ss_conf 28999975887733499999999769818877799996---23116657727767612999999999
No 180
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=94.11 E-value=0.19 Score=30.15 Aligned_cols=92 Identities=15% Similarity=0.204 Sum_probs=54.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC-EEEEE---EEECCCCCC------------------C--CCC-----
Q ss_conf 699998256678999999999899999973996-59999---982685200------------------2--788-----
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHS-FVVSA---ISARDKNID------------------R--GID----- 55 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~-i~i~~---i~~r~~~k~------------------~--~~~----- 55 (438)
=+|.++|.|.||+-.++.|.+ .|+. +.++- ++..|.++. | .++
T Consensus 31 ~~V~VvGiGGVGSw~veALaR--------sGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V 102 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALAR--------SGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEV 102 (263)
T ss_pred CCEEEEECCCHHHHHHHHHHH--------CCCCEEEEEECHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 948999458453999999998--------188818997120102223212667766231437899999999861987467
Q ss_pred -CCCCHHCCCHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEE
Q ss_conf -77102207888984488998999864888851135788886327028850
Q gi|254780900|r 56 -CLRYEWFDDPLIMAGEADIDVFVELIGGEDYPAYDAVRIALMRGCHVVTA 105 (438)
Q Consensus 56 -~~~~~~~~d~~~li~~~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTA 105 (438)
.-...|+.|..+-+...+.|-||++|-... +--+++..|.+++..|||.
T Consensus 103 ~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~-~Kv~Li~~c~~~ki~vIss 152 (263)
T COG1179 103 TAINDFITEENLEDLLSKGFDYVIDAIDSVR-AKVALIAYCRRNKIPVISS 152 (263)
T ss_pred EEHHHHHCHHHHHHHHCCCCCEEEECHHHHH-HHHHHHHHHHHCCCCEEEE
T ss_conf 6057660685699981689987998132037-7899999999859977960
No 181
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase; InterPro: IPR000706 N -Acetylglutamate (NAG) fulfils distinct biological roles in lower and higher organisms. In prokaryotes, lower eukaryotes and plants it is the first intermediate in the biosynthesis of arginine, whereas in ureotelic (excreting nitrogen mostly in the form of urea) vertebrates, it is an essential allosteric cofactor for carbamyl phosphate synthetase I (CPSI), the first enzyme of the urea cycle. The pathway that leads from glutamate to arginine in lower organisms employs eight steps, starting with the acetylation of glutamate to form NAG. In these species, NAG can be produced by two enzymatic reactions: one catalysed by NAG synthase (NAGS) and the other by ornithine acetyltransferase (OAT). In ureotelic species, NAG is produced exclusively by NAGS. In lower organisms, NAGS is feedback-inhibited by L-arginine, whereas mammalian NAGS activity is significantly enhanced by this amino acid. The NAGS genes of bacteria, fungi and mammals are more diverse than other arginine-biosynthesis and urea-cycle genes. The evolutionary relationship between the distinctly different roles of NAG and its metabolism in lower and higher organisms remains to be determined . The pathway from glutamate to arginine is: NAGS; N-acetylglutamate synthase (2.3.1.1 from EC) (glutamate to N-acetylglutamate) NAGK; N-acetylglutamate kinase (2.7.2.8 from EC) (N-acetylglutamate to N-acetylglutamate-5P) NAGSA; N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (N-acetylglutamate-5P to N-acetylglumate semialdehyde) Acetylornithine aminotransferase (2.6.1.11 from EC) (N-acetylglumate semialdehyde to N-acetylornithine) Acetylornithine deacetylase (3.5.1.16 from EC) (N-acetylornithine to ornithine) Arginase (3.5.3.1 from EC) (ornithine to arginine) N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (AGPR) , is the enzyme that catalyzes the third step in the biosynthesis of arginine from glutamate, the NADP-dependent reduction of N-acetyl-5-glutamyl phosphate into N-acetylglutamate 5-semialdehyde. In bacteria it is a monofunctional protein of 35 to 38 kD (gene argC), while in fungi it is part of a bifunctional mitochondrial enzyme (gene ARG5,6, arg11 or arg-6) which contains a N-terminal acetylglutamate kinase (2.7.2.8 from EC) domain and a C-terminal AGPR domain. In the Escherichia coli enzyme, a cysteine has been shown to be implicated in the catalytic activity, and the region around this residue is well conserved.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0006526 arginine biosynthetic process.
Probab=94.10 E-value=0.23 Score=29.54 Aligned_cols=86 Identities=19% Similarity=0.262 Sum_probs=55.9
Q ss_pred EEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC-CCCCCC-----CC---C-CHH-CCCH---HHHH
Q ss_conf 6999982-56678999999999899999973996599999826852-002788-----77---1-022-0788---8984
Q gi|254780900|r 5 LKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKN-IDRGID-----CL---R-YEW-FDDP---LIMA 69 (438)
Q Consensus 5 ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~-k~~~~~-----~~---~-~~~-~~d~---~~li 69 (438)
+||||+| -|--|..++++|.+|.+ ++++.+..++.. .-+.+. +. . ..+ ..+. +++
T Consensus 1 ~~V~IvGAsGYtG~EL~RLL~~HP~---------~e~~~~~ss~~~~aG~~~~~~~P~L~g~~~~~~~~~~~~~~~~~~- 70 (361)
T TIGR01850 1 IKVGIVGASGYTGGELLRLLANHPE---------VEITYLVSSRESLAGKPLSEVHPHLRGLVDYLNLEPLDDAKLEEI- 70 (361)
T ss_pred CEEEEEECCCHHHHHHHHHHHCCCC---------EEEEEEEEEEEHHCCCCHHHHCCCHHHHHCCCCCCCCCHHHHHHH-
T ss_conf 9689993344468999999841995---------378888876201138525773661110100233366676678886-
Q ss_pred CC-CCCCEEEECCCCCCCCHHHHHHHHHHCCEEEE
Q ss_conf 48-89989998648888511357888863270288
Q gi|254780900|r 70 GE-ADIDVFVELIGGEDYPAYDAVRIALMRGCHVV 103 (438)
Q Consensus 70 ~~-~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVV 103 (438)
. .++|+|+=++ ..+.+.+++.+.|++|+.||
T Consensus 71 -~L~~~DvVFlAl--Phgvs~~~~p~~l~~g~~Vi 102 (361)
T TIGR01850 71 -ELEDADVVFLAL--PHGVSMELAPELLEAGVKVI 102 (361)
T ss_pred -HHCCCCEEEECC--CHHHHHHHHHHHHHCCCEEE
T ss_conf -213767899868--72556999999984798699
No 182
>pfam02826 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain. This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.
Probab=94.08 E-value=0.42 Score=27.72 Aligned_cols=105 Identities=15% Similarity=0.132 Sum_probs=55.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEEECCCCC
Q ss_conf 69999825667899999999989999997399659999982685200278877102207888984488998999864888
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFVELIGGE 84 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVVEliGg~ 84 (438)
-+|||+|+|.+|+.+++.+. -+|. ++.+. ++..... ... ......+..+++.. .|+|+=+...+
T Consensus 37 k~vgIiG~G~IG~~va~~l~--------~fg~--~V~~~-d~~~~~~--~~~-~~~~~~~l~~ll~~--sDii~~~~plt 100 (176)
T pfam02826 37 KTVGIIGLGRIGRAVARRLK--------AFGM--KVIAY-DRYPKAE--AEA-LGARYVSLDELLAE--SDVVSLHLPLT 100 (176)
T ss_pred CEEEEECCCHHHHHHHHHHH--------HHCC--CEEEE-CCCCCCH--HHH-CCEEECCHHHHHHH--CCEEEECCCCC
T ss_conf 99999896999999999999--------8398--12543-7987610--231-57166689999862--99887547674
Q ss_pred CCCH---HHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8511---35788886327028850417788768999987531396
Q gi|254780900|r 85 DYPA---YDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNA 126 (438)
Q Consensus 85 ~~pA---~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv 126 (438)
+... -.-..+.++.|.-+|-.--+.+... +.|.+.-+++..
T Consensus 101 ~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde-~aL~~aL~~~~i 144 (176)
T pfam02826 101 PETRHLINAERLALMKPGAILINTARGGLVDE-DALIAALKSGRI 144 (176)
T ss_pred CCCCCCCCHHHHHHHCCCCEEEEECCCCCCCH-HHHHHHHHHCCC
T ss_conf 20246346999985189988998067551289-999999980991
No 183
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=94.03 E-value=0.13 Score=31.35 Aligned_cols=87 Identities=21% Similarity=0.216 Sum_probs=47.3
Q ss_pred EEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC--CCCCCCC---CCCCC--HHCCCHHHHHCCCCCCEE
Q ss_conf 999982-566789999999998999999739965999998268--5200278---87710--220788898448899899
Q gi|254780900|r 6 KVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARD--KNIDRGI---DCLRY--EWFDDPLIMAGEADIDVF 77 (438)
Q Consensus 6 kIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~--~~k~~~~---~~~~~--~~~~d~~~li~~~~IDvV 77 (438)
||||+| .|-||+.++++|.+|. .+++..+..++ ..+.-.. .+... ...+ ..+ ....++|++
T Consensus 1 kVaIvGatGyvG~eli~lL~~hp---------~~~~~~l~as~~~~G~~i~~~~~~l~~~~~~~~~-~~~-~~~~~~Dvv 69 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHP---------DFEVVALAASARSAGKRVSEAGPHLKGEVVLELE-PED-FEELAVDIV 69 (122)
T ss_pred CEEEECCCHHHHHHHHHHHHHCC---------CCCEEEEEEECCCCCCCHHHHCCCCCCCCCCEEC-CCC-CCCCCCCEE
T ss_conf 98998945199999999998589---------9745777740465897578859664577350565-331-100179999
Q ss_pred EECCCCCCCCHHHHH---HHHHHCCEEEEEE
Q ss_conf 986488885113578---8886327028850
Q gi|254780900|r 78 VELIGGEDYPAYDAV---RIALMRGCHVVTA 105 (438)
Q Consensus 78 VEliGg~~~pA~~~i---~~AL~~GkhVVTA 105 (438)
+=+++ .+.+.+++ .+.+++|.-||-.
T Consensus 70 f~a~p--~~~s~~~~~~~~~~~~~g~~VIDl 98 (122)
T smart00859 70 FLALP--HGVSKEIAPLLPKAAEAGVKVIDL 98 (122)
T ss_pred EECCC--CHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 99388--278899999889887569879868
No 184
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=93.95 E-value=0.26 Score=29.21 Aligned_cols=77 Identities=18% Similarity=0.159 Sum_probs=52.9
Q ss_pred CEEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEEECCC
Q ss_conf 26999982-56678999999999899999973996599999826852002788771022078889844889989998648
Q gi|254780900|r 4 VLKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFVELIG 82 (438)
Q Consensus 4 ~ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVVEliG 82 (438)
+.||+|+| -|..|..++++|.+|. ++++..+..... + +.. .. .+++ .++|+|+=+.
T Consensus 2 ~~kV~I~GasGytG~EL~rlL~~Hp---------~vel~~i~~~~~-k--~~~-----~~---~~~~--~~~DvvFlal- 58 (314)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRS---------DIELLSIPEAKR-K--DPA-----AR---RELL--NAADIAILCL- 58 (314)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC---------CEEEEEECCCCC-C--CHH-----HH---HHHH--HCCCEEEECC-
T ss_conf 8269998998856999999997599---------829999671125-5--755-----67---8775--0699999999-
Q ss_pred CCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 8885113578888632702885
Q gi|254780900|r 83 GEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 83 g~~~pA~~~i~~AL~~GkhVVT 104 (438)
.++.+.+++...++.|+-||-
T Consensus 59 -Ph~~s~~~v~~~~~~g~kVID 79 (314)
T PRK11863 59 -PDDAAREAVALIDNPATRVID 79 (314)
T ss_pred -CCHHHHHHHHHHHHCCCEEEE
T ss_conf -977899999988627988998
No 185
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=93.85 E-value=0.21 Score=29.80 Aligned_cols=92 Identities=15% Similarity=0.162 Sum_probs=57.0
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCH--HCCCHHHHHCCCCCCEEEE
Q ss_conf 87269999825667899999999989999997399659999982685200278877102--2078889844889989998
Q gi|254780900|r 2 AGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYE--WFDDPLIMAGEADIDVFVE 79 (438)
Q Consensus 2 sk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~--~~~d~~~li~~~~IDvVVE 79 (438)
.++.|+.|+|+|+.|++++.--.. .+ ..++++++.|-+.++- +....... -.++....+.+.++|+.+=
T Consensus 82 ~~~tnviiVG~GnlG~All~Y~f~------~~--~~~~iv~~FDv~~~~V-G~~~~~v~V~~~d~le~~v~~~dv~iaiL 152 (211)
T COG2344 82 DKTTNVIIVGVGNLGRALLNYNFS------KK--NGMKIVAAFDVDPDKV-GTKIGDVPVYDLDDLEKFVKKNDVEIAIL 152 (211)
T ss_pred CCCEEEEEECCCHHHHHHHCCCCH------HH--CCCEEEEEECCCHHHH-CCCCCCEEEECHHHHHHHHHHCCCCEEEE
T ss_conf 740348999057088898607423------32--6935999961787883-75248814552688888988617618999
Q ss_pred CCCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 6488885113578888632702885
Q gi|254780900|r 80 LIGGEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 80 liGg~~~pA~~~i~~AL~~GkhVVT 104 (438)
+.. .+ .|-+.+..-.++|..-+.
T Consensus 153 tVP-a~-~AQ~vad~Lv~aGVkGIl 175 (211)
T COG2344 153 TVP-AE-HAQEVADRLVKAGVKGIL 175 (211)
T ss_pred ECC-HH-HHHHHHHHHHHCCCCEEE
T ss_conf 734-89-899999999983873588
No 186
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.83 E-value=0.095 Score=32.30 Aligned_cols=67 Identities=24% Similarity=0.303 Sum_probs=41.6
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC---C-------------CC-C-------CC
Q ss_conf 98726999982566789999999998999999739965999998268520---0-------------27-8-------87
Q gi|254780900|r 1 MAGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI---D-------------RG-I-------DC 56 (438)
Q Consensus 1 Msk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k---~-------------~~-~-------~~ 56 (438)
|++.=||+++|.|++|++++.++. ..|.++.+ .+++.+. . ++ + .+
T Consensus 1 M~~ik~VaViGAG~MG~giA~~~a--------~~G~~V~l---~D~~~e~~~~~~~~i~~~l~~~~~~~~l~~~~~~~~l 69 (292)
T PRK07530 1 MMAIKKVGVIGAGQMGNGIAHVCA--------LAGYDVLL---NDVSADRLESGMATINGNLARQVAKGKISEEARAAAL 69 (292)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH--------HCCCCEEE---EECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 999888999896699999999999--------67996899---9798899999999999999999970688889999998
Q ss_pred CCCHHCCCHHHHHCCCCCCEEEECC
Q ss_conf 7102207888984488998999864
Q gi|254780900|r 57 LRYEWFDDPLIMAGEADIDVFVELI 81 (438)
Q Consensus 57 ~~~~~~~d~~~li~~~~IDvVVEli 81 (438)
.....++|..+ + .+.|+|+|++
T Consensus 70 ~~i~~~~~~~~-~--~~aDlViEav 91 (292)
T PRK07530 70 ARITTATTLDD-L--ADCDLVIEAA 91 (292)
T ss_pred HCCCCCCCHHH-H--CCCCEEEECC
T ss_conf 40777689889-6--6499999888
No 187
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=93.83 E-value=0.43 Score=27.70 Aligned_cols=158 Identities=20% Similarity=0.271 Sum_probs=72.3
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC-CCC----------------CCCCHHCCCHH
Q ss_conf 2699998256678999999999899999973996599999826852002-788----------------77102207888
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDR-GID----------------CLRYEWFDDPL 66 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~-~~~----------------~~~~~~~~d~~ 66 (438)
-.+|+|-|||+||+.+++.|.+. | ..+++|+|.+...-. +.. .+.... -+..
T Consensus 23 g~~vaVqGfGnVG~~~a~~l~~~--------G--akvvavsD~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 91 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEE--------G--GKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDY-FPGE 91 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--------C--CEEEEEECCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCC-CCCC
T ss_conf 99999989889999999999985--------9--98999985787177899986999999998189653666530-5986
Q ss_pred HHHCCCCCCEEEEC-CCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEE-CCCCCHHHH--HH
Q ss_conf 98448899899986-488885113578888632702885041778876899998753139669960-564530131--89
Q gi|254780900|r 67 IMAGEADIDVFVEL-IGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFE-AAVAGGIPI--IR 142 (438)
Q Consensus 67 ~li~~~~IDvVVEl-iGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~e-asV~ggiPi--i~ 142 (438)
+++. -++||++-+ +++. ...+-+. .|++..=+=-||-.+ ....++ .-+++|+.+.=. .+=+||+=+ +.
T Consensus 92 ~~~~-~~~DIliPaAl~~~--I~~~~a~-~i~ak~I~EgAN~P~-t~ea~~---iL~~rgI~viPD~laNaGGVivSy~E 163 (217)
T cd05211 92 AILG-LDVDIFAPCALGNV--IDLENAK-KLKAKVVAEGANNPT-TDEALR---ILHERGIVVAPDIVANAGGVIVSYFE 163 (217)
T ss_pred CCCC-CCCCEEEECCCCCC--CCHHHHH-HHCCEEEECCCCCCC-CHHHHH---HHHHCCCEEECHHHHCCCCEEEEHHH
T ss_conf 5003-67768964244588--7989998-717728950678998-978999---99978998947688468672222999
Q ss_pred HHHHHHHCCCCEEEEEEECCCHHHHEEHHHCC-CCCHHHHHHHHHHCCC
Q ss_conf 99876412862034333142000000001006-8778899887876176
Q gi|254780900|r 143 ILKNYVEYDEINRVYGIINGTCNYILSHMNNL-GLSFQDCLEEARRQGY 190 (438)
Q Consensus 143 ~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~~~-g~~f~~al~~Aq~lGy 190 (438)
-.++ +.+.. =|-.-+..++++. ...|+++...|++.|.
T Consensus 164 w~Qn-~~~~~---------W~~eeV~~kL~~~m~~~~~~v~~~a~~~~~ 202 (217)
T cd05211 164 WVQN-LQRLS---------WDAEEVRSKLEQVMTDIHNGVFAISERDGV 202 (217)
T ss_pred HHHH-CCCCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9740-46689---------999999999999999999999999998693
No 188
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=93.82 E-value=0.61 Score=26.61 Aligned_cols=11 Identities=0% Similarity=0.060 Sum_probs=3.8
Q ss_pred ECCCCCCCCCC
Q ss_conf 16773000366
Q gi|254780900|r 271 KYDSVMALVDG 281 (438)
Q Consensus 271 ~~~~~la~v~g 281 (438)
|.+|||-++.+
T Consensus 264 ~~~~pl~~l~~ 274 (311)
T PRK08410 264 EKNHPLLNIKN 274 (311)
T ss_pred CCCCHHHHCCC
T ss_conf 99984554678
No 189
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.79 E-value=0.16 Score=30.70 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=51.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC-EEEEE---EEECCCCCC-----CCCCCCC-----------------
Q ss_conf 699998256678999999999899999973996-59999---982685200-----2788771-----------------
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHS-FVVSA---ISARDKNID-----RGIDCLR----------------- 58 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~-i~i~~---i~~r~~~k~-----~~~~~~~----------------- 58 (438)
-+|.++|+|.||+-+++.|. +.|+. +.++- |...|.++. ..+..++
T Consensus 12 s~V~v~G~GGvGs~~a~~La--------rsGVG~l~lvD~D~v~~SNLnRQ~~a~~~~iG~~K~~~~~~rl~~iNP~~~v 83 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALA--------RSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEV 83 (231)
T ss_pred CCEEEECCCHHHHHHHHHHH--------HCCCCEEEEEECCEECCCCHHHHHCCCHHHCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 97899888636899999999--------8099759997199904544443301656336997289999999987999889
Q ss_pred ----CHHC-CCHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEE
Q ss_conf ----0220-7888984488998999864888851135788886327028850
Q gi|254780900|r 59 ----YEWF-DDPLIMAGEADIDVFVELIGGEDYPAYDAVRIALMRGCHVVTA 105 (438)
Q Consensus 59 ----~~~~-~d~~~li~~~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTA 105 (438)
..++ ++..+++. .+.|+||++|-... +-+.++..|.++++.+|++
T Consensus 84 ~~~~~~~~~~n~~~ll~-~~~D~VvDaiD~~~-~K~~l~~~c~~~~iplIss 133 (231)
T cd00755 84 DAVEEFLTPDNSEDLLG-GDPDFVVDAIDSIR-AKVALIAYCRKRKIPVISS 133 (231)
T ss_pred EEEHHHCCHHHHHHHHC-CCCCEEEECCCCHH-HHHHHHHHHHHCCCEEEEE
T ss_conf 98625159989999845-47777853442487-7999999999829908998
No 190
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II; InterPro: IPR006436 This family describes the type II glyceraldehyde-3-phosphate dehydrogenases which are limited to archaea. These enzymes catalyze the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. In archaea, either NAD or NADP may be utilised as the cofactor.; GO: 0008943 glyceraldehyde-3-phosphate dehydrogenase activity, 0050661 NADP binding, 0051287 NAD binding, 0006096 glycolysis, 0005737 cytoplasm.
Probab=93.75 E-value=0.051 Score=34.18 Aligned_cols=147 Identities=16% Similarity=0.239 Sum_probs=76.8
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC------CCCCC-------------CCCCCHHCCCHHH
Q ss_conf 9998256678999999999899999973996599999826852------00278-------------8771022078889
Q gi|254780900|r 7 VGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKN------IDRGI-------------DCLRYEWFDDPLI 67 (438)
Q Consensus 7 IgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~------k~~~~-------------~~~~~~~~~d~~~ 67 (438)
|||=||||+|+=++.-+.++ .|.+|++|..++++ +.+++ .-.+..+.--..+
T Consensus 1 VgiNGYGTIGKRVAdAv~kQ---------dDMklvGVtKtsPdfEA~~A~e~Gi~~Y~~~~e~~~~FEeaGi~V~GT~ed 71 (335)
T TIGR01546 1 VGINGYGTIGKRVADAVIKQ---------DDMKLVGVTKTSPDFEAFIAKEKGIDIYVAAEEFLKKFEEAGIKVAGTVED 71 (335)
T ss_pred CCCCCCCCCCHHHHHHHCCC---------CCCEEEEECCCCCCHHHHHHHHCCCEEEECCHHHHHHHHHCCCEEECCHHH
T ss_conf 92345356222444441369---------982377411689838888887679326426704431254368704425787
Q ss_pred HHCCCCCCEEEECCC-CCCCCHHH-HHHHHHHCCEEEEE--ECHHHHH-HHHHHHHHHHHHCCCEE-E-EECCCCCHHHH
Q ss_conf 844889989998648-88851135-78888632702885--0417788-76899998753139669-9-60564530131
Q gi|254780900|r 68 MAGEADIDVFVELIG-GEDYPAYD-AVRIALMRGCHVVT--ANKALIA-SHGKDLALLAQKNNAIL-N-FEAAVAGGIPI 140 (438)
Q Consensus 68 li~~~~IDvVVEliG-g~~~pA~~-~i~~AL~~GkhVVT--ANKallA-~~g~eL~~lA~~~gv~l-~-~easV~ggiPi 140 (438)
|++ ..||||++|. |...--++ +. ++.|..-+- -.|+=.| ..+..+...-..=|..+ + -++..-| .
T Consensus 72 L~e--k~DIvVD~TP~G~GaknK~G~Y---ek~g~kAiFQGGEKaeva~~SF~a~~NY~~alGKdY~RVVSCNTTg---L 143 (335)
T TIGR01546 72 LLE--KVDIVVDATPEGVGAKNKEGIY---EKLGLKAIFQGGEKAEVADISFSALANYEEALGKDYVRVVSCNTTG---L 143 (335)
T ss_pred HHH--HCCEEEECCCCCCCCCCCCHHH---HHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHH---H
T ss_conf 310--4288885687874432311036---6507613643783012442125555106763178638998416267---8
Q ss_pred HHHHHHHHHCCCCEEEEEEECCCHHHHEEHHHCCCCCHHHH
Q ss_conf 89998764128620343331420000000010068778899
Q gi|254780900|r 141 IRILKNYVEYDEINRVYGIINGTCNYILSHMNNLGLSFQDC 181 (438)
Q Consensus 141 i~~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~a 181 (438)
+|||..-=--++|.+++.+ |-..+.+=+++
T Consensus 144 ~RTln~ind~~~v~kVrAv-----------~vRRaADp~~v 173 (335)
T TIGR01546 144 VRTLNAINDLSKVEKVRAV-----------MVRRAADPKEV 173 (335)
T ss_pred HHHHHHHHHHCCCCEEEEE-----------EEECCCCHHHC
T ss_conf 8766433233061058999-----------98537893342
No 191
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=93.69 E-value=0.24 Score=29.50 Aligned_cols=97 Identities=22% Similarity=0.288 Sum_probs=53.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE----EECC----CCCC-------CCCCCC-CCHHCCCHHHHH
Q ss_conf 99998256678999999999899999973996599999----8268----5200-------278877-102207888984
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAI----SARD----KNID-------RGIDCL-RYEWFDDPLIMA 69 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i----~~r~----~~k~-------~~~~~~-~~~~~~d~~~li 69 (438)
||+++|.|.+|++++.+|.++..........++.+-.. ..++ .+.. .++.++ ....+.|..+.+
T Consensus 1 KI~ViGaGawGTALA~~La~ng~~~~~~~~~~V~lw~r~~~~~~~~~~~~in~~~~N~~yLp~i~Lp~~i~~t~dl~~~~ 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHH
T ss_conf 98998779999999999997488654557863799972322100468999974496867798784898608966899998
Q ss_pred CCCCCCEEEECCCCCCCCHH---HH---HHHHHHCCEEEEEECHHH
Q ss_conf 48899899986488885113---57---888863270288504177
Q gi|254780900|r 70 GEADIDVFVELIGGEDYPAY---DA---VRIALMRGCHVVTANKAL 109 (438)
Q Consensus 70 ~~~~IDvVVEliGg~~~pA~---~~---i~~AL~~GkhVVTANKal 109 (438)
++. |+++=++ |+. +. ++..++.+..+|++-|++
T Consensus 81 ~~a--d~ii~av-----Ps~~~r~~~~~l~~~l~~~~~ii~~sKGl 119 (342)
T TIGR03376 81 KGA--DILVFVI-----PHQFLEGICKQLKGHVKPNARAISCIKGL 119 (342)
T ss_pred HCC--CEEEEEC-----CHHHHHHHHHHHHHHCCCCCEEEEEECCE
T ss_conf 369--8899966-----86999999999985458887389842344
No 192
>pfam02423 OCD_Mu_crystall Ornithine cyclodeaminase/mu-crystallin family. This family contains the bacterial Ornithine cyclodeaminase enzyme EC:4.3.1.12, which catalyses the deamination of ornithine to proline. This family also contains mu-Crystallin the major component of the eye lens in several Australian marsupials, mRNA for this protein has also been found in human retina.
Probab=93.58 E-value=0.43 Score=27.65 Aligned_cols=87 Identities=11% Similarity=0.137 Sum_probs=43.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC------CCCCHHCCCHHHHHCCCCCCEEE
Q ss_conf 699998256678999999999899999973996599999826852002788------77102207888984488998999
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGID------CLRYEWFDDPLIMAGEADIDVFV 78 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~------~~~~~~~~d~~~li~~~~IDvVV 78 (438)
-+++|+|+|..+...++.+... .+++-+.+.+|+.++.+.+. .......+|+.+.+.+ .|||+
T Consensus 130 ~~l~iiGaG~QA~~~l~al~~v---------~~i~~v~v~~r~~~~~~~f~~~~~~~~~~v~~~~~~~~av~~--ADIIv 198 (312)
T pfam02423 130 STLAIIGAGAQAEFQAEALSAV---------LPIEEIRIYDRDPEAAEKFARNLQGKGFEIVACTSAEEAVEG--ADIVV 198 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHH---------CCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCHHHHHHC--CCEEE
T ss_conf 5799964625389999999961---------997689999689899999999998349965994899999714--99899
Q ss_pred ECCCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 86488885113578888632702885
Q gi|254780900|r 79 ELIGGEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 79 EliGg~~~pA~~~i~~AL~~GkhVVT 104 (438)
-++...+.|-.+ ...|+.|.||..
T Consensus 199 taT~s~~~P~~~--~~~l~~G~hv~~ 222 (312)
T pfam02423 199 TVTPDKEFPILK--AEWVKPGVHINA 222 (312)
T ss_pred EEECCCCCCCCC--HHHCCCCCEEEE
T ss_conf 973599775007--788389868997
No 193
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit; InterPro: IPR014215 This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by IPR014214 from INTERPRO. This protein is also known as SpoVFA..
Probab=93.56 E-value=0.12 Score=31.59 Aligned_cols=107 Identities=24% Similarity=0.260 Sum_probs=55.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC-CCCCCCCCCCHH-CCCHHHHHCCCCCCEEEECCCC
Q ss_conf 99998256678999999999899999973996599999826852-002788771022-0788898448899899986488
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKN-IDRGIDCLRYEW-FDDPLIMAGEADIDVFVELIGG 83 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~-k~~~~~~~~~~~-~~d~~~li~~~~IDvVVEliGg 83 (438)
|+.++|||.+|+++++.+.- .|.++ .|++|+.. ..|-++.....+ +....+-+ .++|+|+..
T Consensus 154 ~v~VlGfGRtG~tiAr~f~a--------LGA~V---~V~AR~~~dlARI~E~g~~P~~~~~L~~~v--~e~DIviNT--- 217 (288)
T TIGR02853 154 NVMVLGFGRTGMTIARTFSA--------LGARV---SVGARSSADLARITEMGLEPVPLNKLEEKV--AEIDIVINT--- 217 (288)
T ss_pred EEEEECCCCHHHHHHHHHHH--------CCCEE---EEECCCHHHHHHHHHHCCCCCCHHHHHHHH--CCCCEEEEC---
T ss_conf 45788447056899999972--------69805---753178367899999606882716788765--000247706---
Q ss_pred CCCCHHHHHHHHH-HCCEEEE---EECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf 8851135788886-3270288---504177887689999875313966996056453013
Q gi|254780900|r 84 EDYPAYDAVRIAL-MRGCHVV---TANKALIASHGKDLALLAQKNNAILNFEAAVAGGIP 139 (438)
Q Consensus 84 ~~~pA~~~i~~AL-~~GkhVV---TANKallA~~g~eL~~lA~~~gv~l~~easV~ggiP 139 (438)
.||.=+.+..| +--+|-| .|.|. |--=|+.|++.|++ |--+=|+|
T Consensus 218 --iPaLvlt~~~l~~lp~~AviiDLAS~P-----GGtDF~yAk~~Gi~----A~LAPGLP 266 (288)
T TIGR02853 218 --IPALVLTKDVLSKLPKHAVIIDLASKP-----GGTDFEYAKKRGIK----ALLAPGLP 266 (288)
T ss_pred --CCCCCCCHHHHHHCCCCCEEEEECCCC-----CCCCHHHHHHCCCE----EEECCCCC
T ss_conf --763003658995268584899732784-----87376989862982----89718787
No 194
>PRK08507 prephenate dehydrogenase; Validated
Probab=93.55 E-value=0.13 Score=31.44 Aligned_cols=168 Identities=15% Similarity=0.147 Sum_probs=73.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC-CCCCCCCCCCHHCCCHHHHHCCCCCCEEEECCCC
Q ss_conf 699998256678999999999899999973996599999826852-0027887710220788898448899899986488
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKN-IDRGIDCLRYEWFDDPLIMAGEADIDVFVELIGG 83 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~-k~~~~~~~~~~~~~d~~~li~~~~IDvVVEliGg 83 (438)
|||+|+|+|-+|.+++.-|.++ +...+|.++ +++.. ..+.....-..-..+..+ + .+.|+||=++.
T Consensus 1 M~I~IiGlGLiGgSla~alk~~--------~~~~~V~g~-d~~~~~~~~A~~~g~id~~~~~~~-i--~~aDlVila~P- 67 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEN--------KLISCVYGY-DHNEEHEKDALDLGLVDEIVEFEE-I--KECDVIFLAIP- 67 (275)
T ss_pred CEEEEEECCHHHHHHHHHHHHC--------CCCCEEEEE-ECCHHHHHHHHHCCCCCCCCCHHH-C--CCCCEEEEECC-
T ss_conf 9899990087899999999950--------998679999-599999999998699861067312-3--65798999176-
Q ss_pred CCCCHHHHHHHHHH-CCEEEEE---ECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 88511357888863-2702885---0417788768999987531396699605645301318999876412862034333
Q gi|254780900|r 84 EDYPAYDAVRIALM-RGCHVVT---ANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILKNYVEYDEINRVYGI 159 (438)
Q Consensus 84 ~~~pA~~~i~~AL~-~GkhVVT---ANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~~~l~~~~i~~i~GI 159 (438)
.. ...+++++... ....+|| .-|..+... +. +..... .-||=|+--.=+.+... .....
T Consensus 68 v~-~~~~~l~~l~~l~~~~iitDv~SvK~~i~~~---~~---~~~~~~------fVg~HPmAGsE~sG~~~----a~~~L 130 (275)
T PRK08507 68 VD-AIIEILQKLLDIKENTTIIDLGSTKAKIIES---IP---KSIRKN------FIAAHPMTGTEFSGPKA----AFKGL 130 (275)
T ss_pred HH-HHHHHHHHHHHCCCCCEEEECCCHHHHHHHH---HH---HHCCCC------CCCCCCCCCCCCCCHHH----HHHHH
T ss_conf 99-9999999986046788898343128999999---98---625688------44349978887544544----10778
Q ss_pred ECCCHHHHEEHHHCCCC-CHHHHHHHHHHCCCCCCCCCCCCCHHHHH
Q ss_conf 14200000000100687-78899887876176156532232117899
Q gi|254780900|r 160 INGTCNYILSHMNNLGL-SFQDCLEEARRQGYAEGDATFDINGVDSS 205 (438)
Q Consensus 160 lnGT~nyIL~~m~~~g~-~f~~al~~Aq~lGyaE~DP~~Di~G~Daa 205 (438)
|.|- +|||+....... ..+.+..-.+.+|- ..- ..|.+=+|..
T Consensus 131 F~~~-~~il~p~~~~~~~~~~~~~~l~~~lGa-~~~-~~~~~~HD~~ 174 (275)
T PRK08507 131 YKGA-VVVLCDLEKSGEKHQERAKEIFSGIGM-KIV-FMDSKEHDHH 174 (275)
T ss_pred HCCC-EEEEECCCCCCHHHHHHHHHHHHHCCC-EEE-ECCCHHHHHH
T ss_conf 5398-599968888979999999999998199-788-7482336899
No 195
>TIGR00119 acolac_sm acetolactate synthase, small subunit; InterPro: IPR004789 Acetolactate synthases are a group of biosynthetic enzymes apparently found in plants, fungi and bacteria that are capable of de novo synthesis of the branched-chain amino acids . They can all synthesize acetolactate from pyruvate in the biosynthesis of valine, while some are also capable of synthesizing acetohydroxybutyrate from pyruvate and ketobutyrate during the biosynthesis of isoleucine. These enzymes generally require thiamin diphosphate, FAD and a divalent metal ion for catalysis, though some enzymes specific for acetolactate synthesis do not require FAD. They are composed of two subunits, a large catalytic subunit, and a smaller regulatory subunit which binds the natural modulators (valine, and in some cases leucine or isoleucine). These enzymes are the target for currently-used herbicides such as sulphonylureas and imidazolinones. Their restricted distribution also makes them potential targets for the development of novel antibacterial and antifungal compounds. This entry represents the small regulatory subunit of acetolactate synthase. It contains an ACT domain, which is a predicted regulatory ligand-binding fold often found in proteins regulated by small-molecule effectors .; GO: 0003984 acetolactate synthase activity, 0009082 branched chain family amino acid biosynthetic process.
Probab=93.54 E-value=0.37 Score=28.12 Aligned_cols=73 Identities=11% Similarity=0.224 Sum_probs=56.0
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 327999924888748999999886699578888226778776135999921048899999999862383000473
Q gi|254780900|r 353 EYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRYS 427 (438)
Q Consensus 353 ~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~~ 427 (438)
++.+...+.++||+++.++++|+..+.+|+++.--.. +......+.++++-- ++.++...+++.++-.+.+..
T Consensus 2 ~~~~~~~~~~~~g~l~~~~g~~~~~g~n~~~~~~~~~-~~~~~~~~~~~~~g~-~~~~e~~~~~l~~~~~~~~~~ 74 (205)
T TIGR00119 2 KHILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPT-EDPDLSRMTIVVVGD-DKVLEQLTKQLNKLVDVLKVS 74 (205)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHHCCCCCCCEEECCC-CCCCCEEEEEEEECC-HHHHHHHHHHHHHHHHHHHHH
T ss_conf 4057766514541367877766531566100131156-776520478886054-146899999887654333210
No 196
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.51 E-value=0.13 Score=31.33 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=44.2
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC-CCC-CCCCCHHCCCHHHHHCCCCCCEEEECC
Q ss_conf 269999825667899999999989999997399659999982685200-278-877102207888984488998999864
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNID-RGI-DCLRYEWFDDPLIMAGEADIDVFVELI 81 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~-~~~-~~~~~~~~~d~~~li~~~~IDvVVEli 81 (438)
|-|||++|||++|+++++-|.++.. ...+-..+.+++..+. ..+ .......+.+..+++. +.|+|+=++
T Consensus 1 M~kI~fIG~GnMg~Aii~Gll~~~~-------~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dvIilaV 71 (275)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEV-------ITPEEIILYSRSENEHFKQLYDKYPTVALASNEELFT--KCDHSFICV 71 (275)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-------CCCCEEEEECCCCHHHHHHHHHHCCCEEECCHHHHHH--HCCEEEEEE
T ss_conf 9889998678999999999997899-------9963699978993899999998749536377799985--499899997
Q ss_pred CCCCCCH--HHHHH---HHHHCCEEEEE
Q ss_conf 8888511--35788---88632702885
Q gi|254780900|r 82 GGEDYPA--YDAVR---IALMRGCHVVT 104 (438)
Q Consensus 82 Gg~~~pA--~~~i~---~AL~~GkhVVT 104 (438)
.|. .+++. ..+..+++||+
T Consensus 72 ----KP~~~~~vl~~i~~~~~~~~~iIS 95 (275)
T PRK06928 72 ----PPLAVLPLMKDCAPVLTPDRHVVS 95 (275)
T ss_pred ----CHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf ----858799999997653279968999
No 197
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase; InterPro: IPR006236 This group of sequences represent the long form of D-3-phosphoglycerate dehydrogenase, they include the serA gene of one pathway of serine biosynthesis. Shorter forms not in this group include SerA from Escherichia coli. ; GO: 0004617 phosphoglycerate dehydrogenase activity, 0006564 L-serine biosynthetic process.
Probab=93.44 E-value=0.44 Score=27.59 Aligned_cols=355 Identities=16% Similarity=0.182 Sum_probs=151.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEEECCCCCC
Q ss_conf 99998256678999999999899999973996599999826852002788771022078889844889989998648888
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFVELIGGED 85 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVVEliGg~~ 85 (438)
.+|++|+|.+|+.++..... ....+.+- +.-....+. ..-......+..+++... |++.-.+.-+.
T Consensus 141 ~~g~~g~g~~g~~~~~~~~~----------~~~~~~~~-dp~~~~~~~-~~~g~~~~~~~~~~~~~~--d~~~~h~p~~~ 206 (535)
T TIGR01327 141 TLGVIGLGRIGSEVAKRAKA----------FGMKVLAY-DPYLPPERA-EKLGVELLADLDELLARA--DFITLHTPLTP 206 (535)
T ss_pred EEEEEECCHHHHHHHHHHHH----------HCCEEEEE-CCCCCHHHH-HHHCHHHHHHHHHHHHHC--CEEEEECCCCC
T ss_conf 00011123011467665443----------12046752-565663346-550213332078886324--53576336660
Q ss_pred CCH---HHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEE----EEECCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 511---3578888632702885041778876899998753139669----960564530131899987641286203433
Q gi|254780900|r 86 YPA---YDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAIL----NFEAAVAGGIPIIRILKNYVEYDEINRVYG 158 (438)
Q Consensus 86 ~pA---~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l----~~easV~ggiPii~~l~~~l~~~~i~~i~G 158 (438)
... ..-...-.+.|.-++.+-++-+... ..|.+..+...+.. .|+..-.. |.+..-...+..+.+..---
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~-~~l~~~~~~g~~~~~~~d~~~~~p~~--p~~~~~~~l~~~~~~~~~ph 283 (535)
T TIGR01327 207 ETKGLIGAEELAKLKPGVIIVNCARGGLIDE-AALYEALEEGHVGGAALDVFEKEPPT--PFIGEDNPLLDLDNVVLTPH 283 (535)
T ss_pred HHHHHCCHHHHHHHCCCEEEEEECCCCCCCH-HHHHHHHHCCCHHHHEEEHHCCCCCC--CCCCCCHHHHCCCCCEECCC
T ss_conf 2332103256664047606985034663206-88998763131001000000025775--43244101210221011134
Q ss_pred EECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCC---CCCCCCCH-------HHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 31420000000010068778899887876176156---53223211-------789999999999981885553100012
Q gi|254780900|r 159 IINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEG---DATFDING-------VDSSHKIAILSAIAFGIDTSVEGVYCE 228 (438)
Q Consensus 159 IlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~---DP~~Di~G-------~Daa~Kl~ILa~~~~g~~~~~~~v~~~ 228 (438)
+-..| .- .+ ..-+....+-+.++..-+..+. -|..+.+- .+.+.|+-.++....+..+..-++.++
T Consensus 284 ~g~~~-~~--~~-~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 359 (535)
T TIGR01327 284 LGAST-EE--AQ-ENVGLDVAEEVLDALKGLPVPNAVNLPGLDPDVLEKLKPYLDLAEKLGKLAGQLLGGGVRKVEVTYR 359 (535)
T ss_pred CCCCH-HH--HH-HHHHHHHHHHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 45421-46--67-7778888999999860331000102566564556766678888887777887640453203677750
Q ss_pred HH-HHCCHHHHHHHHHCC-------CEEEEEEEE-EECCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEE-EEE---E
Q ss_conf 23-204767403478719-------858741013-3136783569999864167730003665416898311-310---0
Q gi|254780900|r 229 GI-SNITLEDIRGAADFG-------YCIKFLAMA-RRKGKGIIRYVYPVLLKYDSVMALVDGITNAVVIETN-GLG---K 295 (438)
Q Consensus 229 gI-~~i~~~di~~a~~~g-------~~ikli~~~-~~~~~~i~~~V~P~li~~~~~la~v~g~~Nai~i~~~-~~g---~ 295 (438)
|- ......-+..+.-.| ..+.++... .....++...... -....+-.|.+.+... ..+ .
T Consensus 360 g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 431 (535)
T TIGR01327 360 GELAELETEPLTRALLKGLLKPVLDDEVNLVNAPALAKERGITVEESK--------SESSPDYDNLLEVTVTGDGGEERE 431 (535)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEC--------CCCCCCCCCEEEEEEECCCCCCCE
T ss_conf 431110025788999887764431121100000123320252245301--------113566452489998147874212
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 58972687666102068899999974177776556666783100234438853446532799992488874899999988
Q gi|254780900|r 296 LTMTGPGAGGSATASAVLGDICSIAKTNTQKSVSWALGKESSSFSVIHCDGVYEEEKEYFIRLTIRNFEGILDKITSQMS 375 (438)
Q Consensus 296 ~~~~G~GAG~~~TAsaV~sDli~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yYLRl~v~DkpGVLa~It~ila 375 (438)
..+.|. ++ +.........+-..++-....|++.+.-.|+||++.++..+|+
T Consensus 432 ~~~~g~----------~~-------------------~~~~~~~~~~~~~~~~~~p~g~~~~~~~~d~pg~~g~~g~~~g 482 (535)
T TIGR01327 432 VSVAGT----------VF-------------------GGGGPRITEIDGFEVDLEPEGYLLIILHLDKPGVIGKVGSLLG 482 (535)
T ss_pred EEEEEE----------EE-------------------CCCCCEEEEECCEEEEECCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 466432----------21-------------------4765036764150330035751789850676521455666641
Q ss_pred HCCCCEEEEEECCC-CCCCCEEEEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 66995788882267-787761359999210488999999998623
Q gi|254780900|r 376 DFNISLRLFSCPHQ-EENSQEFSVFMITHKVSGKLIRDAIECFNG 419 (438)
Q Consensus 376 k~~ISIesi~Q~~~-~~~~~~~~IViiTh~~~e~~i~~ai~~i~~ 419 (438)
+++++|..+..-.. ...+...-++.+.++.....+.. +.++..
T Consensus 483 ~~~~~~~~~~~g~~~~~gg~~~~~~~~d~~~~~~~~~~-~~~~~~ 526 (535)
T TIGR01327 483 EAGINIAGFQLGRKDEKGGDALLLLSLDDPLPDEVLEE-LKELPG 526 (535)
T ss_pred HCCCCEEEEECCCCCCCCCCEEEEEEECCCCCHHHHHH-HHHCCH
T ss_conf 03662000111544456762378886066677579999-863010
No 198
>PRK07574 formate dehydrogenase; Provisional
Probab=93.43 E-value=0.41 Score=27.82 Aligned_cols=15 Identities=13% Similarity=-0.008 Sum_probs=11.5
Q ss_pred EEEEECCCCCCCCCC
Q ss_conf 986416773000366
Q gi|254780900|r 267 PVLLKYDSVMALVDG 281 (438)
Q Consensus 267 P~li~~~~~la~v~g 281 (438)
|...|.+|||.++.+
T Consensus 313 ~EP~p~dhPl~~lpN 327 (385)
T PRK07574 313 PQPAPADHPWRTMPR 327 (385)
T ss_pred CCCCCCCCCHHCCCC
T ss_conf 889989980222996
No 199
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.39 E-value=0.28 Score=29.03 Aligned_cols=50 Identities=14% Similarity=0.277 Sum_probs=39.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCH
Q ss_conf 9999248887489999998866995788882267787761359999210488
Q gi|254780900|r 356 IRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSG 407 (438)
Q Consensus 356 LRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e 407 (438)
+.+...|+||.|.++++.|++.+++|.+-.- ...++..+.++-+|...-.
T Consensus 4 ieV~s~drpGlL~~v~q~L~dl~L~I~~A~I--sT~Ge~~~DVFyVtD~~G~ 53 (72)
T cd04895 4 VKVDSARKPGILLEAVQVLTDLDLCITKAYI--SSDGGWFMDVFHVTDQLGN 53 (72)
T ss_pred EEEECCCCCCCHHHHHHHHHHCCEEEEEEEE--ECCCCEEEEEEEEECCCCC
T ss_conf 9980699986599999999868928989999--4259889999998069999
No 200
>TIGR00655 PurU formyltetrahydrofolate deformylase; InterPro: IPR004810 An Escherichia coli gene designated purU has been identified and characterised. The gene codes for a 280-amino-acid protein, PurU (P37051 from SWISSPROT, 3.5.1.10 from EC). PurU is an enzyme that catalyses the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate ,. 10-formyltetrahydrofolate + H(2)O = formate +tetrahydrofolate Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer of 32kDa subunits, is activated by methionine and inhibited by glycine. Heterotropic cooperativity is observed for activation by methionine in the presence of glycine and for inhibition by glycine in the presence of methionine. These results suggest that formyl-FH4 hydrolase is a regulatory enzyme whose main function is to balance the pools of FH4 and C1-FH4 in response to changing growth conditions. The enzyme uses methionine and glycine to sense the pools of C1-FH4 and FH4, respectively. ; GO: 0008864 formyltetrahydrofolate deformylase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=93.29 E-value=0.3 Score=28.82 Aligned_cols=64 Identities=5% Similarity=0.090 Sum_probs=42.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCC-E---EEEEEEEEEC-------CHHHHHHHHHH-HH
Q ss_conf 7999924888748999999886699578888226778776-1---3599992104-------88999999998-62
Q gi|254780900|r 355 FIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQ-E---FSVFMITHKV-------SGKLIRDAIEC-FN 418 (438)
Q Consensus 355 YLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~-~---~~IViiTh~~-------~e~~i~~ai~~-i~ 418 (438)
-|+++.-|+||..|+||+++++++-+|=+.-|...+..++ + +++=..--+. ++..+++++.+ +.
T Consensus 2 ~Ll~~CpD~kGlva~is~f~~~~g~NIi~~dq~~~D~~~g~Ff~R~e~~~~~~~~nteikeq~~~~L~~~~~~ala 77 (294)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQFSVDPETGRFFMRVELQLEGFRLNTEIKEQEESELLAAFKSALA 77 (294)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEECCCEEECCCCCCEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 0123159788728999999997489867417564415777131234440368731200001405899999986434
No 201
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.19 E-value=0.77 Score=25.91 Aligned_cols=50 Identities=6% Similarity=0.183 Sum_probs=34.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECC
Q ss_conf 999924888748999999886699578888226778776135999921048
Q gi|254780900|r 356 IRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVS 406 (438)
Q Consensus 356 LRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~ 406 (438)
+-+...|+||.+++|++.|+..++||..-.-.-. .++....++.++.+..
T Consensus 4 i~v~~~Dr~gLf~~i~~~l~~~~l~I~~A~I~t~-~~g~~~D~F~V~d~~g 53 (73)
T cd04900 4 VFIYTPDRPGLFARIAGALDQLGLNILDARIFTT-RDGYALDTFVVLDPDG 53 (73)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEC-CCCEEEEEEEEECCCC
T ss_conf 9999689787899999999988985999999985-8986999999988999
No 202
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=93.18 E-value=0.63 Score=26.50 Aligned_cols=13 Identities=23% Similarity=0.020 Sum_probs=9.5
Q ss_pred EEECCCCCCCCCC
Q ss_conf 6416773000366
Q gi|254780900|r 269 LLKYDSVMALVDG 281 (438)
Q Consensus 269 li~~~~~la~v~g 281 (438)
..|.+|||....+
T Consensus 264 Pl~~~~pL~~~pn 276 (324)
T COG0111 264 PLPADSPLWDLPN 276 (324)
T ss_pred CCCCCCHHHCCCC
T ss_conf 9999974353998
No 203
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=93.13 E-value=0.22 Score=29.74 Aligned_cols=123 Identities=23% Similarity=0.307 Sum_probs=70.4
Q ss_pred EEEEECCCHHHH--HHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC------CCCHH-CCCHHHHHCCCCCCE
Q ss_conf 999982566789--999999998999999739965999998268520027887------71022-078889844889989
Q gi|254780900|r 6 KVGVAGLGTVGS--ALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDC------LRYEW-FDDPLIMAGEADIDV 76 (438)
Q Consensus 6 kIgiiG~G~VG~--~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~------~~~~~-~~d~~~li~~~~IDv 76 (438)
||.|+|+|.=|. ++++.|.++.. .+ .+.|.+....+.... ....+ +.+..+.-...++|+
T Consensus 1 ~i~i~GlG~tG~G~a~a~~L~~~g~--------~~---~~~D~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~ 69 (476)
T TIGR01087 1 KILILGLGKTGRGVAVARFLKKKGA--------EV---TVTDDDPEEELERSKGQLKLSEGVVLYTGGKDDLEDLNNADL 69 (476)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCC--------EE---EEEECCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCEE
T ss_conf 9789986751078999999997298--------79---999845221343113312455641353267531012334207
Q ss_pred EEECCCCCCCCHHHHHHHHHHCCEEEEE--------EC---H-HHHH---HHH-----HHHHHHHHHCCCEEEEECCCCC
Q ss_conf 9986488885113578888632702885--------04---1-7788---768-----9999875313966996056453
Q gi|254780900|r 77 FVELIGGEDYPAYDAVRIALMRGCHVVT--------AN---K-ALIA---SHG-----KDLALLAQKNNAILNFEAAVAG 136 (438)
Q Consensus 77 VVEliGg~~~pA~~~i~~AL~~GkhVVT--------AN---K-allA---~~g-----~eL~~lA~~~gv~l~~easV~g 136 (438)
||-- .|+. |...++++|.++|.-|+| .+ + ..++ ..| .=+..+.++.| +.|-+||
T Consensus 70 vv~S-PGi~-~~hp~~~~a~~~g~~v~gdi~L~~~~~~~~~~~~~~aITGTnGKtTTT~L~~~~L~~~G----~~a~~gG 143 (476)
T TIGR01087 70 VVLS-PGIP-PDHPLVQAAAKRGIPVVGDIELALRLVDFPEPAKVVAITGTNGKTTTTSLLYHLLKAAG----LKAVLGG 143 (476)
T ss_pred EEEC-CCCC-CCCHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCC----CCEEEEC
T ss_conf 9978-9898-67779999996698089867999974157898737999726860799999999998469----9778625
Q ss_pred --HHHHHHHHH
Q ss_conf --013189998
Q gi|254780900|r 137 --GIPIIRILK 145 (438)
Q Consensus 137 --giPii~~l~ 145 (438)
|+|++..+.
T Consensus 144 NIG~p~L~~~~ 154 (476)
T TIGR01087 144 NIGTPALEVLD 154 (476)
T ss_pred CCCCHHHHHHC
T ss_conf 78812555310
No 204
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.06 E-value=0.13 Score=31.30 Aligned_cols=63 Identities=17% Similarity=0.106 Sum_probs=39.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC----------------CCC--------CCCCCHH
Q ss_conf 9999825667899999999989999997399659999982685200----------------278--------8771022
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNID----------------RGI--------DCLRYEW 61 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~----------------~~~--------~~~~~~~ 61 (438)
|||++|.|++|++++..+. +.|.++.+ .|.+.+.. ++. ...+..+
T Consensus 4 ~VaViGaG~mG~giA~~~a--------~~G~~V~l---~D~~~~~l~~a~~~i~~~l~~~~~~g~~~~~~~~~~~~ri~~ 72 (308)
T PRK06129 4 SIAIVGAGLIGRAWAIVFA--------RAGHRVRL---WDADPAALAAAPAYIAGRLEDLAAFDLLDGESPDAVLARIRA 72 (308)
T ss_pred EEEEECCCHHHHHHHHHHH--------HCCCCEEE---EECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEE
T ss_conf 7999777899999999998--------58993899---989889999999999999999997699987659999835072
Q ss_pred CCCHHHHHCCCCCCEEEECC
Q ss_conf 07888984488998999864
Q gi|254780900|r 62 FDDPLIMAGEADIDVFVELI 81 (438)
Q Consensus 62 ~~d~~~li~~~~IDvVVEli 81 (438)
++|..+.+. +.|.|+|++
T Consensus 73 ~~~l~~al~--~adlViEav 90 (308)
T PRK06129 73 TDSLADAVA--DADYVQESA 90 (308)
T ss_pred CCCHHHHHC--CCCEEEECC
T ss_conf 288899847--499999998
No 205
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=93.04 E-value=0.72 Score=26.13 Aligned_cols=158 Identities=20% Similarity=0.262 Sum_probs=76.2
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC--CCCCCCC----------------CCHHCCCH
Q ss_conf 26999982566789999999998999999739965999998268520--0278877----------------10220788
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI--DRGIDCL----------------RYEWFDDP 65 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k--~~~~~~~----------------~~~~~~d~ 65 (438)
-.+|+|-|||+||+.+++.|.+. | ..+++|+|.+... +.+++.+ ...+. +.
T Consensus 31 g~~v~IqG~GnVG~~~a~~L~~~--------G--akvv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~-~~ 99 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEA--------G--AKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TN 99 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--------C--CEEEEEECCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC-CC
T ss_conf 99999989889999999999987--------9--9599998478738888889999999999965980267887538-96
Q ss_pred HHHHCCCCCCEEEEC-CCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEEC-CCCCHHHH--H
Q ss_conf 898448899899986-4888851135788886327028850417788768999987531396699605-64530131--8
Q gi|254780900|r 66 LIMAGEADIDVFVEL-IGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEA-AVAGGIPI--I 141 (438)
Q Consensus 66 ~~li~~~~IDvVVEl-iGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~ea-sV~ggiPi--i 141 (438)
.+++. -++||++-+ +++. ...+-+. .|++..=|=-||-.+ ....+ +.-+++|+.+.=.- +=+||+=+ +
T Consensus 100 ~~~~~-~~~DI~iP~A~~~~--I~~~~a~-~l~ak~I~EgAN~p~-t~~A~---~~L~~rgI~viPD~laNaGGVivSy~ 171 (227)
T cd01076 100 EELLE-LDCDILIPAALENQ--ITADNAD-RIKAKIIVEAANGPT-TPEAD---EILHERGVLVVPDILANAGGVTVSYF 171 (227)
T ss_pred CCHHC-CCCCEEEECCCCCC--CCHHHHH-HCCCEEEEECCCCCC-CHHHH---HHHHHCCCEEECCHHHCCCCEEEEHH
T ss_conf 23104-78878987776697--7999985-447619984578998-98899---99998869896807744877445599
Q ss_pred HHHHHHHHCCCCEEEEEEECCCHHHHEEHHHC-CCCCHHHHHHHHHHCCC
Q ss_conf 99987641286203433314200000000100-68778899887876176
Q gi|254780900|r 142 RILKNYVEYDEINRVYGIINGTCNYILSHMNN-LGLSFQDCLEEARRQGY 190 (438)
Q Consensus 142 ~~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~~-~g~~f~~al~~Aq~lGy 190 (438)
.-.++ +.... =|-..+.+++++ -...|++++..|++.|.
T Consensus 172 Ew~qn-~~~~~---------w~~~~V~~~l~~~m~~~~~~v~~~a~~~~~ 211 (227)
T cd01076 172 EWVQN-LQGFY---------WDEEEVNSRLETKMREAFEAVLETAEKYGV 211 (227)
T ss_pred HHHCC-CCCCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98632-55679---------899999999999999999999999999595
No 206
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=93.02 E-value=0.51 Score=27.16 Aligned_cols=52 Identities=15% Similarity=0.267 Sum_probs=40.1
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 248887489999998866995788882267787761359999210488999999998623
Q gi|254780900|r 360 IRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNG 419 (438)
Q Consensus 360 v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~ 419 (438)
..+.||+.+++.+.|++++|+|..+.|-.. +....+++ .+++.+.+++.|.+
T Consensus 10 m~~~~gi~a~~f~~L~~~~Inv~~isq~~s---e~~Is~vV-----~~~d~~~av~~Lh~ 61 (65)
T cd04892 10 MRGTPGVAARIFSALAEAGINIIMISQGSS---EVNISFVV-----DEDDADKAVKALHE 61 (65)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEEECCC---CCEEEEEE-----EHHHHHHHHHHHHH
T ss_conf 477805999999999987998799883586---30599998-----48999999999998
No 207
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=92.95 E-value=0.099 Score=32.16 Aligned_cols=62 Identities=23% Similarity=0.384 Sum_probs=38.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC----------------CCC-C-------CCCCCHH
Q ss_conf 999982566789999999998999999739965999998268520----------------027-8-------8771022
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI----------------DRG-I-------DCLRYEW 61 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k----------------~~~-~-------~~~~~~~ 61 (438)
|||++|.|++|++++..+.. .|.++.+ .+++.+. .++ . ......+
T Consensus 1 kV~ViGaG~mG~~iA~~~a~--------~G~~V~l---~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~ 69 (180)
T pfam02737 1 KVAVIGAGTMGAGIAQVFAR--------AGLEVVL---VDISEEALEKARARIEKSLARLVEKGRLTEEDVDAVLARISF 69 (180)
T ss_pred CEEEECCCHHHHHHHHHHHH--------CCCEEEE---EECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
T ss_conf 98999978899999999996--------7993999---979989999999999998999997256756769999852410
Q ss_pred CCCHHHHHCCCCCCEEEECC
Q ss_conf 07888984488998999864
Q gi|254780900|r 62 FDDPLIMAGEADIDVFVELI 81 (438)
Q Consensus 62 ~~d~~~li~~~~IDvVVEli 81 (438)
++|+.++. +.|+|+|++
T Consensus 70 ~~~l~~~~---~adlViEav 86 (180)
T pfam02737 70 TTDLADAV---DADLVIEAV 86 (180)
T ss_pred CCCHHHHC---CCCEEEECC
T ss_conf 58899975---899999925
No 208
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.85 E-value=0.13 Score=31.27 Aligned_cols=184 Identities=16% Similarity=0.221 Sum_probs=84.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC----------------CCC-C-------CCCCCHH
Q ss_conf 999982566789999999998999999739965999998268520----------------027-8-------8771022
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI----------------DRG-I-------DCLRYEW 61 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k----------------~~~-~-------~~~~~~~ 61 (438)
||+++|.|++|++++..+.. .|.++.+ .+++.+. .++ + ...+..+
T Consensus 4 kV~ViGaG~mG~~IA~~~a~--------~G~~V~l---~D~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~ 72 (284)
T PRK07819 4 RVGVVGAGQMGSGIAEVCAR--------AGVDVLV---FETTEEAATAGRNRIEKSLERAVSAGKLTERERDAALARLTF 72 (284)
T ss_pred EEEEECCCHHHHHHHHHHHH--------CCCEEEE---EECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
T ss_conf 79998977899999999995--------7990899---979889999999999999999987278987999999963706
Q ss_pred CCCHHHHHCCCCCCEEEECCCCCCCCH-HHHHHHHHHC---CEEEE-EECHHHHHHHHHHHHHHHHH----CCCEEEEEC
Q ss_conf 078889844889989998648888511-3578888632---70288-50417788768999987531----396699605
Q gi|254780900|r 62 FDDPLIMAGEADIDVFVELIGGEDYPA-YDAVRIALMR---GCHVV-TANKALIASHGKDLALLAQK----NNAILNFEA 132 (438)
Q Consensus 62 ~~d~~~li~~~~IDvVVEliGg~~~pA-~~~i~~AL~~---GkhVV-TANKallA~~g~eL~~lA~~----~gv~l~~ea 132 (438)
++|..++ .+.|+|+|++ .|... +.-+.+-|++ ..+.+ +.|---+.- .+|....+. -|..|..-+
T Consensus 73 ~~dl~~~---~~adlViEav--~E~l~~K~~l~~~ld~~~~~p~~IlaSNTS~l~i--s~la~~~~~p~R~ig~HffnP~ 145 (284)
T PRK07819 73 TTDLEDL---ADRQLVIEAV--VEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPI--MKLAAATKRPGRVLGLHFFNPV 145 (284)
T ss_pred CCCHHHH---CCCCEEEECC--CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC--HHHHHCCCCHHHHCCCCCCCCC
T ss_conf 6899997---6599999907--3878888999999997428998599965888761--3444115887771156424783
Q ss_pred CCCCHHH----------HHHHHHHHHHCCCCEEEEEEECCCHHHHEEHHH-----------CCCCCHHHHHHHHHHCCCC
Q ss_conf 6453013----------189998764128620343331420000000010-----------0687788998878761761
Q gi|254780900|r 133 AVAGGIP----------IIRILKNYVEYDEINRVYGIINGTCNYILSHMN-----------NLGLSFQDCLEEARRQGYA 191 (438)
Q Consensus 133 sV~ggiP----------ii~~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~-----------~~g~~f~~al~~Aq~lGya 191 (438)
.++--+= ++..+.+.+ .....+.-=+.+-+-.||.++|. ++|..--+-+-.|-+.||-
T Consensus 146 ~~~~LVEIv~g~~Ts~~~~~~~~~~~-~~~l~k~~v~~~d~pGFi~NRl~~~~~~ea~~l~~eGva~~edID~~~~~~~g 224 (284)
T PRK07819 146 PVLPLVELVPTLVTSEATVARAEEFA-TEVLGKQVVRCQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCA 224 (284)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH-HHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
T ss_conf 22125777179999899999999999-98269663686677774199999999999999998389999999999876769
Q ss_pred CC-CC--CCCCCHHHHHHHH
Q ss_conf 56-53--2232117899999
Q gi|254780900|r 192 EG-DA--TFDINGVDSSHKI 208 (438)
Q Consensus 192 E~-DP--~~Di~G~Daa~Kl 208 (438)
=| =| ..|+-|+|+...+
T Consensus 225 ~p~GPf~l~D~~GlD~~~~v 244 (284)
T PRK07819 225 HPMGPLRLADLIGLDTVKLI 244 (284)
T ss_pred CCCCHHHHHHHHHHHHHHHH
T ss_conf 80668898888719999999
No 209
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=92.82 E-value=0.44 Score=27.60 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=39.4
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 248887489999998866995788882267787761359999210488999999998623
Q gi|254780900|r 360 IRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNG 419 (438)
Q Consensus 360 v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~ 419 (438)
..+.||+-+++.+.|++++|+|.-+.|-.. +....+ -+.+++.+.|++.|.+
T Consensus 11 m~~~~GvaariF~~La~~~INI~mIsQ~sS---E~sIs~-----vV~~~d~~~Av~aL~~ 62 (80)
T cd04921 11 MVGVPGIAARIFSALARAGINVILISQASS---EHSISF-----VVDESDADKALEALEE 62 (80)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECCCC---CCEEEE-----EECHHHHHHHHHHHHH
T ss_conf 689974899999999987997899973787---656999-----9818999999999999
No 210
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=92.81 E-value=0.87 Score=25.55 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=17.4
Q ss_pred EEEEEECCCHHHHHHHHHHH
Q ss_conf 69999825667899999999
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQ 24 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~ 24 (438)
-+|.++|+|.+|+.++..|.
T Consensus 22 s~VlivG~GGlGs~~~~~La 41 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLA 41 (228)
T ss_pred CCEEEECCCHHHHHHHHHHH
T ss_conf 97899887788999999999
No 211
>PRK08223 hypothetical protein; Validated
Probab=92.69 E-value=0.9 Score=25.43 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=16.8
Q ss_pred EEEEEECCCHHHHHHHHHHH
Q ss_conf 69999825667899999999
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQ 24 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~ 24 (438)
-+|+++|+|.+|+.++..|.
T Consensus 28 s~VlVvG~GGlGs~~a~~LA 47 (287)
T PRK08223 28 SRVAIAGLGGVGGVHLLTLA 47 (287)
T ss_pred CCEEEECCCHHHHHHHHHHH
T ss_conf 96899936755799999999
No 212
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=92.61 E-value=0.76 Score=25.94 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=10.1
Q ss_pred HHHHHHHHHCCCEEEE
Q ss_conf 9999875313966996
Q gi|254780900|r 115 KDLALLAQKNNAILNF 130 (438)
Q Consensus 115 ~eL~~lA~~~gv~l~~ 130 (438)
++|..+++..|+.|.+
T Consensus 128 ~dl~~~v~~~~IPfhh 143 (287)
T COG0788 128 DDLRPLVERFDIPFHH 143 (287)
T ss_pred HHHHHHHHHCCCCEEE
T ss_conf 7889999974998665
No 213
>PRK06199 ornithine cyclodeaminase; Validated
Probab=92.49 E-value=0.35 Score=28.32 Aligned_cols=90 Identities=17% Similarity=0.167 Sum_probs=54.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC---------CCCCHHCCCHHHHHCCCCCC
Q ss_conf 699998256678999999999899999973996599999826852002788---------77102207888984488998
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGID---------CLRYEWFDDPLIMAGEADID 75 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~---------~~~~~~~~d~~~li~~~~ID 75 (438)
-.+||+|+|..++..++-+.... .+++-+.|.+|+.++.+.+. .......+++++.+.+ .|
T Consensus 156 ~~lgiIG~G~qAr~~l~Al~~vr--------p~i~~V~V~~r~~~~a~~fa~~~~~~~~~~~~v~~~~s~eeav~~--aD 225 (379)
T PRK06199 156 KVVGLVGPGVMGKTIVAAFMAVC--------PGIDTIKIKGRSQKSLDAFATWVAETYPQITEVVVVDSEEEVVRG--SD 225 (379)
T ss_pred CEEEEECCHHHHHHHHHHHHHHC--------CCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHC--CC
T ss_conf 78999896399999999999861--------788889998899999999999999766888508982999999737--99
Q ss_pred EEEECCCCCC-CCHHH-HH-HHHHHCCEEEEE
Q ss_conf 9998648888-51135-78-888632702885
Q gi|254780900|r 76 VFVELIGGED-YPAYD-AV-RIALMRGCHVVT 104 (438)
Q Consensus 76 vVVEliGg~~-~pA~~-~i-~~AL~~GkhVVT 104 (438)
||+-++.... .|+.+ ++ ..+|+.|-||..
T Consensus 226 IVvtaTs~~~~~ps~~P~~~~~wlkpGahv~~ 257 (379)
T PRK06199 226 IVTYCTSGEAGDPSAYPYVKREWVKPGAFLLM 257 (379)
T ss_pred EEEECCCCCCCCCCCCCEECHHHCCCCCEEEC
T ss_conf 99977778877777784745999599988945
No 214
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.48 E-value=0.22 Score=29.68 Aligned_cols=93 Identities=16% Similarity=0.209 Sum_probs=48.4
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC---CCCCCCCCCCCHHCCCHHHHH---CCCCC
Q ss_conf 987269999825667899999999989999997399659999982685---200278877102207888984---48899
Q gi|254780900|r 1 MAGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDK---NIDRGIDCLRYEWFDDPLIMA---GEADI 74 (438)
Q Consensus 1 Msk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~---~k~~~~~~~~~~~~~d~~~li---~~~~I 74 (438)
|+.+.||+|+|-|++|..+.--+.++ |-.++......-++ ...|...+.-........-++ ..+||
T Consensus 1 m~sk~kvaiigsgni~tdlm~k~lr~--------g~~le~~~mvgidp~sdglaraarlgv~tt~egv~~ll~~p~~~di 72 (310)
T COG4569 1 MSSKRKVAIIGSGNIGTDLMIKILRH--------GQHLEMAVMVGIDPQSDGLARAARLGVATTHEGVIGLLNMPEFADI 72 (310)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHC--------CCCCCCEEEECCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 98752599973686208899999854--------7865630487348885077888861985224478999839998776
Q ss_pred CEEEECCCCCCCCHHHHHHHHHHCCEEEE
Q ss_conf 89998648888511357888863270288
Q gi|254780900|r 75 DVFVELIGGEDYPAYDAVRIALMRGCHVV 103 (438)
Q Consensus 75 DvVVEliGg~~~pA~~~i~~AL~~GkhVV 103 (438)
|+|.|++. .+.+....-+--+.|...+
T Consensus 73 ~lvfdats--a~~h~~~a~~~ae~gi~~i 99 (310)
T COG4569 73 DLVFDATS--AGAHVKNAAALAEAGIRLI 99 (310)
T ss_pred CEEEECCC--CCHHHHHHHHHHHCCCCEE
T ss_conf 55885243--2034440577886498423
No 215
>KOG2711 consensus
Probab=92.33 E-value=0.86 Score=25.55 Aligned_cols=97 Identities=21% Similarity=0.219 Sum_probs=54.0
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC------------------CCCCCCC-CCHHCC
Q ss_conf 726999982566789999999998999999739965999998268520------------------0278877-102207
Q gi|254780900|r 3 GVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI------------------DRGIDCL-RYEWFD 63 (438)
Q Consensus 3 k~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k------------------~~~~~~~-~~~~~~ 63 (438)
.++||+++|-|++|+.+++++.++...+. .....+++ .+..-...- -.++.+| +...++
T Consensus 20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~-~f~~~Vrm-wv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~ 97 (372)
T KOG2711 20 DPLKVCIVGSGNWGSAIAKIVGENVKEFP-IFDPQVRM-WVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP 97 (372)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCC-CCCCEEEE-EEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECC
T ss_conf 75379998168089999999865254055-66730367-77501337705789987515563423367865997767652
Q ss_pred CHHHHHCCCCCCEEEECCCCCCCCHH---HHH---HHHHHCCEEEEEECHH
Q ss_conf 88898448899899986488885113---578---8886327028850417
Q gi|254780900|r 64 DPLIMAGEADIDVFVELIGGEDYPAY---DAV---RIALMRGCHVVTANKA 108 (438)
Q Consensus 64 d~~~li~~~~IDvVVEliGg~~~pA~---~~i---~~AL~~GkhVVTANKa 108 (438)
|..+.+.|. |++|-.+ |+- .++ ..-++.+.+.|+.-|+
T Consensus 98 dl~ea~~dA--Dilvf~v-----PhQf~~~ic~~l~g~vk~~~~aISL~KG 141 (372)
T KOG2711 98 DLVEAAKDA--DILVFVV-----PHQFIPRICEQLKGYVKPGATAISLIKG 141 (372)
T ss_pred HHHHHHCCC--CEEEEEC-----CHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 399884338--8899948-----7154799999985425799807885404
No 216
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.30 E-value=0.77 Score=25.92 Aligned_cols=84 Identities=17% Similarity=0.109 Sum_probs=47.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC-CCCCCCCCCC--CHHCCCHHHHHCCCCCCEEEECCC
Q ss_conf 9999825667899999999989999997399659999982685-2002788771--022078889844889989998648
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDK-NIDRGIDCLR--YEWFDDPLIMAGEADIDVFVELIG 82 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~-~k~~~~~~~~--~~~~~d~~~li~~~~IDvVVEliG 82 (438)
||.++|+|.-|.++++.|.+. |. ++.. .|.+. ...+...... .....+..+.+ .+.|+||=- .
T Consensus 19 kvlV~GlG~SG~s~a~~L~~~--------G~--~v~~-~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~vV~S-P 84 (476)
T PRK00141 19 RVLVAGAGVSGLGIAKMLSEL--------GC--DVVV-ADDNETQRHMLIEVVDVADISTAQASDAL--DSYSIVVTS-P 84 (476)
T ss_pred CEEEEEECHHHHHHHHHHHHC--------CC--EEEE-EECCCCHHHHHHHHCCCCEECCCCHHHHH--CCCCEEEEC-C
T ss_conf 889992278899999999978--------99--7999-98998703578874798565155306564--689999989-9
Q ss_pred CCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 8885113578888632702885
Q gi|254780900|r 83 GEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 83 g~~~pA~~~i~~AL~~GkhVVT 104 (438)
|+. |...++.+|.++|..|++
T Consensus 85 GI~-~~~p~l~~a~~~gi~vis 105 (476)
T PRK00141 85 GWR-PDSPLLVDAQSAGLEVIG 105 (476)
T ss_pred CCC-CCCHHHHHHHHCCCCEEE
T ss_conf 789-979999999987995771
No 217
>pfam06408 consensus
Probab=92.21 E-value=0.24 Score=29.45 Aligned_cols=90 Identities=18% Similarity=0.251 Sum_probs=49.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC------CCCCCCCCCCHHCC-CHHHHHC----C-CC
Q ss_conf 99998256678999999999899999973996599999826852------00278877102207-8889844----8-89
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKN------IDRGIDCLRYEWFD-DPLIMAG----E-AD 73 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~------k~~~~~~~~~~~~~-d~~~li~----~-~~ 73 (438)
||.++|||.||++++-+|.+|-+.=+. +++.|--++.. ..+++..-...+|. ++.+++. . ..
T Consensus 3 ~Iv~iGfGSIgq~~LPLl~rH~~~~~~------~Itiid~~d~~~~~~~~~~~Gi~fi~~~lT~eNy~~~L~~~L~~gg~ 76 (471)
T pfam06408 3 PILMIGFGSIGRGTLPLIERHFKFDRS------NIVVIDPRDTKKDRKLLAEKGIRFVQTAVTKDNYKNVLDPLLKGGGG 76 (471)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCHH------HEEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf 779987571674206788876078878------98997678754566778756976886145878899999998626777
Q ss_pred CCEEEECCCCCCCCHHHHHHHHHHCCEEEE
Q ss_conf 989998648888511357888863270288
Q gi|254780900|r 74 IDVFVELIGGEDYPAYDAVRIALMRGCHVV 103 (438)
Q Consensus 74 IDvVVEliGg~~~pA~~~i~~AL~~GkhVV 103 (438)
=|.+|+|- .+.-+.++++-|-++|.+-+
T Consensus 77 gdflvnLS--vniss~~ii~~C~e~GvlYl 104 (471)
T pfam06408 77 QGFCVNLS--VDTSSLDLMRLCREHGVLYV 104 (471)
T ss_pred CCEEEEEE--CCCCHHHHHHHHHHHCCEEE
T ss_conf 88799801--15788999999998098775
No 218
>PRK06932 glycerate dehydrogenase; Provisional
Probab=92.07 E-value=1.1 Score=24.92 Aligned_cols=11 Identities=9% Similarity=0.132 Sum_probs=5.5
Q ss_pred HHHHHCCCEEE
Q ss_conf 87531396699
Q gi|254780900|r 119 LLAQKNNAILN 129 (438)
Q Consensus 119 ~lA~~~gv~l~ 129 (438)
+.|+++|+.+.
T Consensus 82 ~aa~~~gI~V~ 92 (314)
T PRK06932 82 VAAKELGITVK 92 (314)
T ss_pred HHHHHCCEEEE
T ss_conf 99974997999
No 219
>PRK09117 consensus
Probab=92.05 E-value=0.22 Score=29.76 Aligned_cols=183 Identities=14% Similarity=0.188 Sum_probs=87.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC-C---------------CC-C-------CCCCCHH
Q ss_conf 999982566789999999998999999739965999998268520-0---------------27-8-------8771022
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI-D---------------RG-I-------DCLRYEW 61 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k-~---------------~~-~-------~~~~~~~ 61 (438)
||+++|.|++|++++..+. ..|.++.+ .+++.+. . ++ . .......
T Consensus 4 ~VaViGaG~mG~~iA~~~a--------~~G~~V~l---~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~ 72 (282)
T PRK09117 4 TVGIIGAGTMGNGIAQACA--------VAGLDVVM---VDISDAAVQRGLATVAGSLDRLIKKEKLTEADKAAALARIKG 72 (282)
T ss_pred EEEEECCCHHHHHHHHHHH--------HCCCCEEE---EECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
T ss_conf 7999897799999999999--------67996899---989889999999999999999997068877889999840656
Q ss_pred CCCHHHHHCCCCCCEEEECCCCCCCCH-HHHHHHHHHC--CEE-EEEECHHHHHHHHHHHHHHHHH----CCCEEEEECC
Q ss_conf 078889844889989998648888511-3578888632--702-8850417788768999987531----3966996056
Q gi|254780900|r 62 FDDPLIMAGEADIDVFVELIGGEDYPA-YDAVRIALMR--GCH-VVTANKALIASHGKDLALLAQK----NNAILNFEAA 133 (438)
Q Consensus 62 ~~d~~~li~~~~IDvVVEliGg~~~pA-~~~i~~AL~~--Gkh-VVTANKallA~~g~eL~~lA~~----~gv~l~~eas 133 (438)
++|... + .+.|+|+|++ .|... +.-+.+-|+. ..| ++..|-.-+. -.+|.+..+. -|..|+.-+.
T Consensus 73 ~~d~~a-~--~~aDlViEav--~E~l~iK~~lf~~l~~~~~~~~IlaSNTS~l~--i~~ia~~~~~p~R~ig~HffnP~~ 145 (282)
T PRK09117 73 STDYDA-L--KDADLVIEAA--TENLDLKLKILKQLDALVGPDAIIATNTSSIS--ITKLAAATSRPDRFIGMHFFNPVP 145 (282)
T ss_pred CCCHHH-H--CCCCEEEECC--CCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC--CHHHHHHCCCHHHCCCCCCCCCCC
T ss_conf 799899-7--5599999878--58888889999999865799818986587676--177887649846415545568866
Q ss_pred CCCHHH----------HHHHHHHHHHCCCCEEEEEEECCCHHHHEEHHH-----------CCCCCHHHHHHHHHHCCCCC
Q ss_conf 453013----------189998764128620343331420000000010-----------06877889988787617615
Q gi|254780900|r 134 VAGGIP----------IIRILKNYVEYDEINRVYGIINGTCNYILSHMN-----------NLGLSFQDCLEEARRQGYAE 192 (438)
Q Consensus 134 V~ggiP----------ii~~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~-----------~~g~~f~~al~~Aq~lGyaE 192 (438)
++--+= ++..+.+. ..++.+.-=++.-+-+||.++|. ++|..--+-+-.|-++||-=
T Consensus 146 ~~~LVEiv~g~~Ts~~~~~~~~~~--~~~lgk~pV~vkd~pGFi~NRl~~a~~~ea~~lv~eGva~~~~ID~~~~~g~g~ 223 (282)
T PRK09117 146 MMALVELIRGLQTSDATHAAVEAL--AKRLGKTPITVKNSPGFVVNRILCPMINEAIFVLGEGLATAEDIDEGMKLGCNH 223 (282)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHH--HHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
T ss_conf 584488649999989999999999--997398799981678810999999999999999984999999999873507999
Q ss_pred C-C--CCCCCCHHHHHHHH
Q ss_conf 6-5--32232117899999
Q gi|254780900|r 193 G-D--ATFDINGVDSSHKI 208 (438)
Q Consensus 193 ~-D--P~~Di~G~Daa~Kl 208 (438)
| = -..|+-|+|+....
T Consensus 224 p~GPf~l~D~~GlD~~~~v 242 (282)
T PRK09117 224 PIGPLALADMIGLDTMLAV 242 (282)
T ss_pred CCCHHHHHHHHHHHHHHHH
T ss_conf 6648999886338899999
No 220
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.04 E-value=0.63 Score=26.51 Aligned_cols=87 Identities=22% Similarity=0.266 Sum_probs=46.0
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC--CCCCCCCCHHCC-C-HHHHHCCCCCCEEEE
Q ss_conf 269999825667899999999989999997399659999982685200--278877102207-8-889844889989998
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNID--RGIDCLRYEWFD-D-PLIMAGEADIDVFVE 79 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~--~~~~~~~~~~~~-d-~~~li~~~~IDvVVE 79 (438)
|=||.++|+|.-|.++++.|.++ +..+.+ .+.+.+.... +.... ...+.. . ..+.+ .++|+||-
T Consensus 7 ~KkvlV~GlG~sG~s~a~~L~~~--------~~~~~v-~~~D~~~~~~~~~~l~~-~~~~~~g~~~~~~l--~~~d~vV~ 74 (438)
T PRK04663 7 IKNVVVVGLGITGLSVVKHLRKT--------QPQLTV-KVIDTRETPPGQEQLPE-DVELHSGGWNQDWL--AEADLVVT 74 (438)
T ss_pred CCEEEEEEECHHHHHHHHHHHHC--------CCCCEE-EEECCCCCHHHHHHHHC-CCEEEECCCCHHHH--CCCCEEEE
T ss_conf 97499990678589999999966--------998469-99639889368876206-97697278896783--68999998
Q ss_pred CCCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 6488885113578888632702885
Q gi|254780900|r 80 LIGGEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 80 liGg~~~pA~~~i~~AL~~GkhVVT 104 (438)
- .|+. +....+..|.++|+.|++
T Consensus 75 S-PGI~-~~~p~~~~a~~~~i~i~~ 97 (438)
T PRK04663 75 N-PGIA-LATPEIQPVLAKGIPVVG 97 (438)
T ss_pred C-CCCC-CCCHHHHHHHHCCCCEEC
T ss_conf 9-9769-989899999986993703
No 221
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=91.94 E-value=0.74 Score=26.02 Aligned_cols=64 Identities=22% Similarity=0.352 Sum_probs=37.0
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC-CCCCCCCC-CHHCCCHHHHHCCCCCCEEEECC
Q ss_conf 26999982566789999999998999999739965999998268520-02788771-02207888984488998999864
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI-DRGIDCLR-YEWFDDPLIMAGEADIDVFVELI 81 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k-~~~~~~~~-~~~~~d~~~li~~~~IDvVVEli 81 (438)
.|||+|+|+|-+|.+++.-|.+. | .+|.++ +++.+. ++.....- ....+++. .+ .+.|+||=++
T Consensus 1 ~mkI~IiGlGLIGgSla~al~~~--------~--~~V~g~-d~~~~~~~~A~~~g~id~~~~~~~-~~--~~aDliila~ 66 (280)
T PRK07417 1 SMNIGIVGLGLIGGSLGLDLRSL--------G--HTVYGV-SRRESTCERAIERGLVDEASTDLS-LL--KDCDLVILAL 66 (280)
T ss_pred CCEEEEEECCHHHHHHHHHHHHC--------C--CEEEEE-ECCHHHHHHHHHCCCCCEECCCHH-HH--CCCCEEEECC
T ss_conf 97899993185799999999968--------9--979999-799999999998699752027874-60--5799899879
No 222
>CHL00194 ycf39 Ycf39; Provisional
Probab=91.90 E-value=0.75 Score=25.98 Aligned_cols=106 Identities=15% Similarity=0.112 Sum_probs=51.2
Q ss_pred EEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCH-H---CCCHHHHHC-CCCCCEEE
Q ss_conf 6999982-5667899999999989999997399659999982685200278877102-2---078889844-88998999
Q gi|254780900|r 5 LKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYE-W---FDDPLIMAG-EADIDVFV 78 (438)
Q Consensus 5 ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~-~---~~d~~~li~-~~~IDvVV 78 (438)
|+|-++| .|++|+.+++.|.++ |.+ + .+.+|+..+.......... + .+|+..+.. -..+|.|+
T Consensus 1 M~ILV~GATG~lGr~vVr~Ll~~--------G~~--V-r~lvRnp~ka~~l~~~Gve~v~gDl~dpesl~~Al~GvdaVi 69 (319)
T CHL00194 1 MSLLVIGATGTLGRQIVRRALDE--------GYQ--V-KCLVRNLRKAAFLKEWGAELVYGDLSLPETIPPALEGITAII 69 (319)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--------CCC--E-EEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEE
T ss_conf 97999899858999999999968--------890--8-999578676323421596799942788778999965996799
Q ss_pred ECCCCCCCCHHHHHHHHHHCCEEEEEECH-HHHHHHHHHHHHHHHHCCCE-EEEECCCCCH
Q ss_conf 86488885113578888632702885041-77887689999875313966-9960564530
Q gi|254780900|r 79 ELIGGEDYPAYDAVRIALMRGCHVVTANK-ALIASHGKDLALLAQKNNAI-LNFEAAVAGG 137 (438)
Q Consensus 79 EliGg~~~pA~~~i~~AL~~GkhVVTANK-allA~~g~eL~~lA~~~gv~-l~~easV~gg 137 (438)
.+.+. .|.... +- ..-......+.++|++.||. +-|=.+.++.
T Consensus 70 ~~~~~--~~~~~~--------------~~~~vd~~g~~~li~AAk~aGVkr~V~lS~lga~ 114 (319)
T CHL00194 70 DASTS--RPSDLN--------------NAYQIDLEGKLALIEAAKAAKVKRFIFFSILNAE 114 (319)
T ss_pred EECCC--CCCCCC--------------HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 94566--778862--------------0889889889999999998499889996135666
No 223
>PRK05442 malate dehydrogenase; Provisional
Probab=91.89 E-value=1.1 Score=24.79 Aligned_cols=77 Identities=22% Similarity=0.302 Sum_probs=41.9
Q ss_pred CCCCEEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC--CCCC---------C-CCCCHHCCCHHH
Q ss_conf 98726999982-566789999999998999999739965999998268520--0278---------8-771022078889
Q gi|254780900|r 1 MAGVLKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI--DRGI---------D-CLRYEWFDDPLI 67 (438)
Q Consensus 1 Msk~ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k--~~~~---------~-~~~~~~~~d~~~ 67 (438)
|++|+||.|+| .|.||+.++-.|.+. +.+-......+. ..+..... .++. . +.....++|+.+
T Consensus 1 m~~p~kV~I~GAaG~ig~~l~~~la~g-~l~g~~~~v~l~---L~Di~~~~~~l~G~ameL~d~a~p~l~~v~~~~~~~~ 76 (325)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASG-DMLGKDQPVILQ---LLEIPQAQKALKGVVMELEDCAFPLLAGVVITDDPKV 76 (325)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCH-HHCCCCCCEEEE---EECCCCCCCCCCEEEEEHHCCCCCCCCCEEEECCHHH
T ss_conf 999729999888868889999998661-320899846999---9657776665566773421167544487685088789
Q ss_pred HHCCCCCCEEEECCCCC
Q ss_conf 84488998999864888
Q gi|254780900|r 68 MAGEADIDVFVELIGGE 84 (438)
Q Consensus 68 li~~~~IDvVVEliGg~ 84 (438)
-++ +.|+|| +++|.
T Consensus 77 a~~--~aDvvi-itag~ 90 (325)
T PRK05442 77 AFK--DADVAL-LVGAR 90 (325)
T ss_pred HHC--CCCEEE-ECCCC
T ss_conf 837--998899-80786
No 224
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=91.80 E-value=0.6 Score=26.66 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=39.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC-----------------C---CCCCCCHHCCC
Q ss_conf 699998256678999999999899999973996599999826852002-----------------7---88771022078
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDR-----------------G---IDCLRYEWFDD 64 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~-----------------~---~~~~~~~~~~d 64 (438)
-|||++|.|++|+|++..+. ..|.++.+ .|.+.+..+ . .......++++
T Consensus 3 kkVAVIGAGvMGsGwAa~FA--------~aG~~V~L---~Dp~peA~~ki~~~l~~a~~al~~L~~~~l~~~grL~~~~s 71 (489)
T PRK07531 3 MKAACIGGGVIGGGWAARFL--------LNGWDVAV---FDPHPEAERIIGEVLANARRALPGLTDAPLPPEGRLSFCAS 71 (489)
T ss_pred CEEEEECCCHHHHHHHHHHH--------HCCCEEEE---EECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCC
T ss_conf 67999871886899999999--------57996999---94887899999999999999877532035564677686388
Q ss_pred HHHHHCCCCCCEEEECC
Q ss_conf 88984488998999864
Q gi|254780900|r 65 PLIMAGEADIDVFVELI 81 (438)
Q Consensus 65 ~~~li~~~~IDvVVEli 81 (438)
..+.+. +.|.|+|.+
T Consensus 72 L~eAV~--dADlVqEaV 86 (489)
T PRK07531 72 LAEAVA--GADWIQESV 86 (489)
T ss_pred HHHHHC--CCCEEEECC
T ss_conf 999974--799999878
No 225
>TIGR01693 UTase_glnD protein-P-II uridylyltransferase; InterPro: IPR010043 This entry describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for signal-transduction protein PII, and acts as the sensory component of the nitrogen regulation (ntr) system . The ntr system modulates nitrogen metabolism in response to the prevailing nitrogen source and the requirements of the cell. During nitrogen fixation, ammonia and 2-oxoglutarate can be used to produce glutamate. The activity of the PII protein is stimulated by glutamine and inhibited by 2-oxoglutarate. Under glutamate-limiting conditions, PII is uridylylated by GlnD leading to the activation of glutamate synthetase and to the stimulation of NtrC-dependent promoters. Under high concentrations of fixed nitrogen, PII is de-uridylylated leading to the inactivation of the glutamate synthetase pathway and switching off NtrC-dependent promoters . Not all homologues of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see IPR002332 from INTERPRO), but the modification site is preserved in the PII homologue of all species with a member of this family. ; GO: 0008773 [protein-PII] uridylyltransferase activity, 0006807 nitrogen compound metabolic process.
Probab=91.80 E-value=0.82 Score=25.71 Aligned_cols=108 Identities=10% Similarity=0.126 Sum_probs=68.8
Q ss_pred EECCCCCCC---CHHHHHHHHHHHHHCCCC--CCCC---CCCCCCCCC------CCCCCCCCHHHCCCCEEEEEEE--CC
Q ss_conf 726876661---020688999999741777--7655---666678310------0234438853446532799992--48
Q gi|254780900|r 299 TGPGAGGSA---TASAVLGDICSIAKTNTQ--KSVS---WALGKESSS------FSVIHCDGVYEEEKEYFIRLTI--RN 362 (438)
Q Consensus 299 ~G~GAG~~~---TAsaV~sDli~i~~~~~~--~~~~---~~~~~~~~~------~~~~~~~~~~~~~~~yYLRl~v--~D 362 (438)
+|.--+..+ -..++..=+.++..+... .... .+-.+.... +...+-..+.+..++-+.-+++ .|
T Consensus 761 ~G~~~~~~~~R~r~~~~~~~~~~~L~~~~~r~~~~~~~r~~~~r~~~hGvPvtrF~~~p~V~~~~~as~~~T~~E~~a~D 840 (903)
T TIGR01693 761 NGSPVEEERVRARLQELRQGLVDVLSGLKKRDPDTIKARRARRRQLQHGVPVTRFAVPPRVTILNTASKKATVMEVRALD 840 (903)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCEEEEEEECC
T ss_conf 16870046788999999999999983544577200542566667666888510245787124344215454488886378
Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHH
Q ss_conf 8874899999988669957888822677877613599992104889
Q gi|254780900|r 363 FEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGK 408 (438)
Q Consensus 363 kpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~ 408 (438)
+||=|+.|+++|.+.+.+|.+=-- .--++..+.+|++|.....+
T Consensus 841 rpGLL~~v~~~l~~~~l~i~~AkI--~T~GE~A~D~Fyvt~~~g~~ 884 (903)
T TIGR01693 841 RPGLLAAVGKTLEELGLSIQSAKI--TTLGEKAEDVFYVTDLFGLK 884 (903)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEE--ECCCCCEEEEEEEECCCCCC
T ss_conf 646289999998750675343456--05466458877640545752
No 226
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.70 E-value=1.2 Score=24.64 Aligned_cols=68 Identities=9% Similarity=0.179 Sum_probs=53.0
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCC
Q ss_conf 532799992488874899999988669957888822677877613599992104889999999986238
Q gi|254780900|r 352 KEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGK 420 (438)
Q Consensus 352 ~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l 420 (438)
.+.-|-|+..+++|-|+++.++|-++++++--+--......+...++ ++...+...++..+|..|...
T Consensus 40 ~~~~llFsLk~~~gsL~r~LkvFe~~~~~l~HiESRpsk~~~~~~e~-fV~ce~~~~~l~~lI~sLr~v 107 (115)
T cd04930 40 QKATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEV-LVRCEVHRSDLLQLISSLRQV 107 (115)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEE-EEEEECCHHHHHHHHHHHHHH
T ss_conf 06889999667753699999999864846999762455678876379-999605586699999999998
No 227
>PRK06141 ornithine cyclodeaminase; Validated
Probab=91.67 E-value=0.65 Score=26.44 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=10.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 2321178999999999998188555310001223
Q gi|254780900|r 197 FDINGVDSSHKIAILSAIAFGIDTSVEGVYCEGI 230 (438)
Q Consensus 197 ~Di~G~Daa~Kl~ILa~~~~g~~~~~~~v~~~gI 230 (438)
.=+=|--...+..+.+-.+ -.++++|.+-+.
T Consensus 128 l~iiG~G~QA~~~l~a~~~---v~~i~~v~v~~r 158 (313)
T PRK06141 128 LLVVGTGRLASLLALAHAS---VRPIKQVRVWGR 158 (313)
T ss_pred EEEECCHHHHHHHHHHHHH---HCCCCEEEEECC
T ss_conf 9997788999999999997---289758999938
No 228
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.63 E-value=0.4 Score=27.92 Aligned_cols=85 Identities=20% Similarity=0.174 Sum_probs=47.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC-CCCC-CCHHCCCHHHHHCCCCCCEEEECCC
Q ss_conf 6999982566789999999998999999739965999998268520027-8877-1022078889844889989998648
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRG-IDCL-RYEWFDDPLIMAGEADIDVFVELIG 82 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~-~~~~-~~~~~~d~~~li~~~~IDvVVEliG 82 (438)
=||+|+|+|.-|.++++.|.++ |.+ + .++|.+...... .... ......+..+.+ .+.|+||=- .
T Consensus 13 k~V~V~GlG~sG~a~a~~L~~~--------G~~--v-~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~vV~S-P 78 (487)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRF--------GAR--P-TVCDDDPDALRPHAERGVATVSSSDAVQQI--ADYALVVTS-P 78 (487)
T ss_pred CEEEEEEECHHHHHHHHHHHHC--------CCE--E-EEEECCCHHHHHHHHCCCCEECCCCCHHHH--CCCCEEEEC-C
T ss_conf 9899991568389999999978--------697--9-999898257799986599486376226564--677889989-9
Q ss_pred CCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 8885113578888632702885
Q gi|254780900|r 83 GEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 83 g~~~pA~~~i~~AL~~GkhVVT 104 (438)
|+. +....+.+|.++|..|++
T Consensus 79 GI~-~~~p~l~~a~~~gi~i~~ 99 (487)
T PRK03369 79 GFP-PTAPVLAAAAAAGVPIWG 99 (487)
T ss_pred CCC-CCCHHHHHHHHCCCCEEE
T ss_conf 579-989999999988990765
No 229
>PRK08639 threonine dehydratase; Validated
Probab=91.50 E-value=1.2 Score=24.50 Aligned_cols=290 Identities=14% Similarity=0.119 Sum_probs=134.7
Q ss_pred HCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHEEHHHCCCC
Q ss_conf 32702885041778876899998753139669960564530131899987641286203433314200000000100687
Q gi|254780900|r 97 MRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILKNYVEYDEINRVYGIINGTCNYILSHMNNLGL 176 (438)
Q Consensus 97 ~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~~~g~ 176 (438)
+..++||+|.- -.|+.-+.-.|+..|+.-.. -+--..|-.+.-+--.-|.++-. =++- |.
T Consensus 71 ~~~~GVV~aSa---GNHaqgvA~aa~~lgi~a~I--vmP~~tp~~Ki~~~r~~Ga~~ve--V~l~-------------G~ 130 (418)
T PRK08639 71 EKAAGVVCASA---GNHAQGVAYACRHLGIPGVI--FMPVTTPKQKIDQVRFFGGEFVE--IVLV-------------GD 130 (418)
T ss_pred HHCCCEEEECC---CHHHHHHHHHHHHHCCCEEE--EECCCCHHHHHHHHHHCCCCEEE--EEEC-------------CC
T ss_conf 61781899778---58999999999983996899--93666759999999962996699--9971-------------89
Q ss_pred CHHHH----HHHHHHCCCCCCCCCCCCCHH---HHHHHHHHHHHHHHCCCCCCCCCHH--HH---HHHCCHHHHHHHHHC
Q ss_conf 78899----887876176156532232117---8999999999998188555310001--22---320476740347871
Q gi|254780900|r 177 SFQDC----LEEARRQGYAEGDATFDINGV---DSSHKIAILSAIAFGIDTSVEGVYC--EG---ISNITLEDIRGAADF 244 (438)
Q Consensus 177 ~f~~a----l~~Aq~lGyaE~DP~~Di~G~---Daa~Kl~ILa~~~~g~~~~~~~v~~--~g---I~~i~~~di~~a~~~ 244 (438)
+|+++ .+.|++.|+.--+|-+|.+=+ -+. =+=|+..+ +-.+|-+.+ -| |+.+ -.+.+++
T Consensus 131 ~~dea~~~A~~~a~~~g~~~i~pfdd~~vIaGqGTi-glEI~eq~----~~~~D~vvvpvGGGGLiaGi----a~~lK~~ 201 (418)
T PRK08639 131 TFDDSAAAAQEYAEETGATFIPPFDDPDVIAGQGTV-AVEILEQL----EEEPDYVFVPVGGGGLISGV----TTYLKEV 201 (418)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCHHH-HHHHHHHC----CCCCCEEEEEECCCHHHHHH----HHHHHHH
T ss_conf 879999999999997097145877883446321469-99999856----88788899961873689999----9999850
Q ss_pred CCEEEEEEEEEECCCCCEEE---EEEEEE--------------ECCCCCCCC-CCCCCEEEEEEEEE----------EEE
Q ss_conf 98587410133136783569---999864--------------167730003-66541689831131----------005
Q gi|254780900|r 245 GYCIKFLAMARRKGKGIIRY---VYPVLL--------------KYDSVMALV-DGITNAVVIETNGL----------GKL 296 (438)
Q Consensus 245 g~~ikli~~~~~~~~~i~~~---V~P~li--------------~~~~~la~v-~g~~Nai~i~~~~~----------g~~ 296 (438)
.-.+|.+|+--.....+..+ =+|+-+ +-+.+|.-+ +.++..+.|.-+.. -.+
T Consensus 202 ~P~ikIiGVEp~~a~~m~~Sl~~g~~v~~~~~~t~aDG~av~~~G~~tf~i~~~~vd~iv~V~e~eI~~Am~~l~e~~k~ 281 (418)
T PRK08639 202 SPKTKVIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVARVGDLTFEILKDVVDDVILVPEGAVCTTILELYNKEGI 281 (418)
T ss_pred CCCCEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHCCC
T ss_conf 99971899815897689999985996006876761133433545567899998628970772899999999999996598
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCC--CCCCCCCCHHHCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf 8972687666102068899999974177776556-66678310--02344388534465327999924888748999999
Q gi|254780900|r 297 TMTGPGAGGSATASAVLGDICSIAKTNTQKSVSW-ALGKESSS--FSVIHCDGVYEEEKEYFIRLTIRNFEGILDKITSQ 373 (438)
Q Consensus 297 ~~~G~GAG~~~TAsaV~sDli~i~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~yYLRl~v~DkpGVLa~It~i 373 (438)
++.|.|| .+-| |++..- +-.++. ++-. .-|-+.+. +....-...-..-..+|++++..|+||.|.+..+.
T Consensus 282 vvEpaGA--~~lA-al~~~~-~~~~gk---~Vv~ilsGgNiD~~~l~~i~er~l~~~gr~~~~~v~~pd~PG~l~~f~~~ 354 (418)
T PRK08639 282 VAEPAGA--LSIA-ALDEYK-DEIKGK---TVVCVISGGNNDIERMPEIKERSLRYEGLKHYFIVNFPQRPGALREFLDD 354 (418)
T ss_pred CCCCHHH--HHHH-HHHHCH-HHHCCC---EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHH
T ss_conf 2245289--9999-998461-552698---09999815888988999999998786298699999789999769999999
Q ss_pred HHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCC
Q ss_conf 88669957888822677877613599992104889999999986238300
Q gi|254780900|r 374 MSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDA 423 (438)
Q Consensus 374 lak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v 423 (438)
+...+-+|-.+... ...+.+..++++--+.-....++..++.|++..+-
T Consensus 355 ~lg~~~~It~f~y~-r~~~~~~~~v~vgie~~~~~~~~~l~~~l~~~g~~ 403 (418)
T PRK08639 355 VLGPDDDITRFEYL-KKNNRETGPVLIGIELKDAEDYDGLLARMEAFGPS 403 (418)
T ss_pred HCCCCCCEEEEEEE-ECCCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 72999856899878-62688704599999959877899999999977997
No 230
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.47 E-value=1.2 Score=24.48 Aligned_cols=70 Identities=24% Similarity=0.199 Sum_probs=38.2
Q ss_pred CC-CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC--CCC--------CCCHHCCCHHHHH
Q ss_conf 98-726999982566789999999998999999739965999998268520027--887--------7102207888984
Q gi|254780900|r 1 MA-GVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRG--IDC--------LRYEWFDDPLIMA 69 (438)
Q Consensus 1 Ms-k~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~--~~~--------~~~~~~~d~~~li 69 (438)
|+ |.-||+|+|+|+||+.++-.|..+ +.-=++. ..|.+.++.++ .++ +......|+.++
T Consensus 2 m~~k~~KI~IIGaG~VG~~~a~~l~~~--------~l~~el~-LiD~~~~~a~g~a~Dl~h~~~~~~~~~i~~gdy~~~- 71 (315)
T PRK00066 2 MKKKHNKVVLVGDGAVGSSYAYALVNQ--------GIADELV-IIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDC- 71 (315)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC--------CCCCEEE-EEECCCCCCHHHHHHHHHHCCCCCCCEEEECCHHHH-
T ss_conf 887898499999798899999999866--------9988899-980898710789998885412368847973999996-
Q ss_pred CCCCCCEEEECCC
Q ss_conf 4889989998648
Q gi|254780900|r 70 GEADIDVFVELIG 82 (438)
Q Consensus 70 ~~~~IDvVVEliG 82 (438)
.+.|+||=.-|
T Consensus 72 --~daDvVVitAG 82 (315)
T PRK00066 72 --KDADLVVITAG 82 (315)
T ss_pred --CCCCEEEECCC
T ss_conf --79999998999
No 231
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=91.46 E-value=0.51 Score=27.16 Aligned_cols=165 Identities=16% Similarity=0.213 Sum_probs=81.4
Q ss_pred CCC-CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC-----C-CCCCHHCCCHHHHHC---
Q ss_conf 987-269999825667899999999989999997399659999982685200278-----8-771022078889844---
Q gi|254780900|r 1 MAG-VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGI-----D-CLRYEWFDDPLIMAG--- 70 (438)
Q Consensus 1 Msk-~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~-----~-~~~~~~~~d~~~li~--- 70 (438)
|.. +-.||++|+|.+|+.++..|.++ | ++ +.+.+|+.++...+ . .....-+.+..++++
T Consensus 1 m~~~~~~IGiIGLGvMG~nmA~Nl~~~--------G--~~-V~vynrt~~k~~~~~~~~~~~~~~i~~~~sl~e~v~sl~ 69 (474)
T PTZ00142 1 MDEGESDIGLIGLAVMGQNLSLNMYSR--------G--FK-VSVYNRTTEKVEEFMKKAKEGNKFVKGYHSLEELVNSLK 69 (474)
T ss_pred CCCCCCCEEEEEEHHHHHHHHHHHHHC--------C--CE-EEEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 997767466873638679999999978--------9--87-999779879999999853224677646678999997379
Q ss_pred CCCCCEEEECC-CCCCCCHH---HHHHHHHHCCEEEEE-ECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH-------
Q ss_conf 88998999864-88885113---578888632702885-0417788768999987531396699605645301-------
Q gi|254780900|r 71 EADIDVFVELI-GGEDYPAY---DAVRIALMRGCHVVT-ANKALIASHGKDLALLAQKNNAILNFEAAVAGGI------- 138 (438)
Q Consensus 71 ~~~IDvVVEli-Gg~~~pA~---~~i~~AL~~GkhVVT-ANKallA~~g~eL~~lA~~~gv~l~~easV~ggi------- 138 (438)
.|. .|+-++ .| .|-. +-+...|+.|-=||= .|=- ...-.+..+..+++|+.|. .+-|-||-
T Consensus 70 ~pr--~Iilmv~aG--~~Vd~vi~~L~~~L~~GDIIID~GNs~--~~dt~rr~~~l~~kgI~fl-d~GVSGGe~GAr~Gp 142 (474)
T PTZ00142 70 RPR--RVMLLIKAG--EAVDEFIDNILPHLEKGDIIIDGGNEW--YNNSERRIKLCKEKGILYI-GMGVSGGEEGARYGP 142 (474)
T ss_pred CCC--EEEEEECCC--HHHHHHHHHHHHCCCCCCEEEECCCCC--HHHHHHHHHHHHHCCCCEE-CCCCCCCHHHHHCCC
T ss_conf 999--899982698--259999999985088999898799888--6579999999985799186-478884357773398
Q ss_pred -----------HHHHHHHHHHHCC----CCEEEEEEECCCHHHHEEHHHCCCCCHHHH--HHHHH
Q ss_conf -----------3189998764128----620343331420000000010068778899--88787
Q gi|254780900|r 139 -----------PIIRILKNYVEYD----EINRVYGIINGTCNYILSHMNNLGLSFQDC--LEEAR 186 (438)
Q Consensus 139 -----------Pii~~l~~~l~~~----~i~~i~GIlnGT~nyIL~~m~~~g~~f~~a--l~~Aq 186 (438)
..++++-+.+++. .--..-| -.|.=.| -+|--+|..|.+- +.|+-
T Consensus 143 siMvGG~~~a~~~v~Pileaiaak~~~~~c~~~~G-~~GaGH~--vKMVHNGIEY~~mq~iaE~y 204 (474)
T PTZ00142 143 SLMPGGNPYAYDHVKDIFQACSAKVGDSPCCDYVG-PGSSGHY--VKMVHNGIEYGDMQLISEAY 204 (474)
T ss_pred EECCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEC-CCCCCHH--HHHHCCCCHHHHHHHHHHHH
T ss_conf 21358868899987689999716169998710368-9871031--00103540389999999999
No 232
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=91.38 E-value=1.3 Score=24.42 Aligned_cols=114 Identities=15% Similarity=0.130 Sum_probs=65.3
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC------CCCCCC---CCHHCCCHHHHHCCCCC
Q ss_conf 269999825667899999999989999997399659999982685200------278877---10220788898448899
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNID------RGIDCL---RYEWFDDPLIMAGEADI 74 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~------~~~~~~---~~~~~~d~~~li~~~~I 74 (438)
||||-+.|.|. |.++++.|++ .+.+..|.+. |.+..-. +....+ ...+.+...+++...+|
T Consensus 1 m~nILvt~~G~-~~~ii~~lk~--------~~~~~~Vi~~-D~~~~a~~~~~aD~~y~~P~~~d~~y~~~ll~i~~~~~i 70 (325)
T PRK12767 1 MMNILVTSAGR-RVQLVKALKK--------SLLGGKVIGA-DISPLAPALYFADKFYVVPKVTDPNYIDALLDICKKENI 70 (325)
T ss_pred CCEEEEECCCC-HHHHHHHHHH--------CCCCCEEEEE-CCCCCCCCHHHCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 94899986786-8999999997--------6998599996-899899534454889987888987899999999998799
Q ss_pred CEEEECCCCCCCCHHH-HHHHHHHCCEEEEEECHHHHH--HHHHHHHHHHHHCCCEE
Q ss_conf 8999864888851135-788886327028850417788--76899998753139669
Q gi|254780900|r 75 DVFVELIGGEDYPAYD-AVRIALMRGCHVVTANKALIA--SHGKDLALLAQKNNAIL 128 (438)
Q Consensus 75 DvVVEliGg~~~pA~~-~i~~AL~~GkhVVTANKallA--~~g~eL~~lA~~~gv~l 128 (438)
|+|+-.+. .+.+... ......+.|.+|+..+...+. ..=..+.+.++++|+..
T Consensus 71 d~iiP~~d-~El~~la~~~~~l~~~gi~v~~~~~e~i~~~~DK~~~~~~l~~~gip~ 126 (325)
T PRK12767 71 DALIPLID-PELPLLAQHRDEFKEIGVKVLVSSKEVIEICNDKWLTYEFLKENGINT 126 (325)
T ss_pred CEEEECCC-HHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCC
T ss_conf 99997785-026689999999996799895697999998549999999999759998
No 233
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=91.28 E-value=0.67 Score=26.33 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=19.5
Q ss_pred CEEEEEECCCHHHHHHHHHHHH
Q ss_conf 2699998256678999999999
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQK 25 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~ 25 (438)
|++++|+|.|++|+++++.+.+
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ 22 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAK 22 (211)
T ss_pred CCEEEEECCCHHHHHHHHHHHH
T ss_conf 9179996257187899999996
No 234
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=91.12 E-value=1.1 Score=24.91 Aligned_cols=30 Identities=23% Similarity=0.165 Sum_probs=21.5
Q ss_pred CCCCCCCCHHHHHHHCCHHHHHHHHHCCCE
Q ss_conf 855531000122320476740347871985
Q gi|254780900|r 218 IDTSVEGVYCEGISNITLEDIRGAADFGYC 247 (438)
Q Consensus 218 ~~~~~~~v~~~gI~~i~~~di~~a~~~g~~ 247 (438)
..+.-+++.+-|--.+-..-++.|+.+|.+
T Consensus 160 ~~~~g~~VlV~GaG~vGl~~~~~ak~~Ga~ 189 (341)
T PRK05396 160 FDLVGEDVLITGAGPIGIMAAAVAKHVGAR 189 (341)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCE
T ss_conf 577888699989975432999999984992
No 235
>PRK06635 aspartate kinase; Reviewed
Probab=91.10 E-value=0.87 Score=25.53 Aligned_cols=247 Identities=12% Similarity=0.160 Sum_probs=104.4
Q ss_pred HHHHHHHCCCCEEEEEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH-----HHHHHHHHC
Q ss_conf 998764128620343331420000000010068778899887876176156532232117899999-----999999818
Q gi|254780900|r 143 ILKNYVEYDEINRVYGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHKI-----AILSAIAFG 217 (438)
Q Consensus 143 ~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl-----~ILa~~~~g 217 (438)
.++..|...++-=+.|-.-.|.+=-.+.+-..|.+|+.++ -|..|+--|-.=--||+|+-+|.-= ..|..+.|.
T Consensus 120 ~~~~~l~~~~v~Vv~GF~g~~~~G~~ttLgRGGSD~sA~~-~a~~l~A~~~~IwtDV~Gi~taDPr~V~~A~~i~~isy~ 198 (402)
T PRK06635 120 RIREALDEGKVVVVAGFQGVDEDGEITTLGRGGSDTTAVA-LAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYE 198 (402)
T ss_pred HHHHHHHCCCEEEECCCEEECCCCCEEEECCCCCHHHHHH-HHHHCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCHH
T ss_conf 8999984697799737312257896677358872189999-998607758999853563051587546777215725999
Q ss_pred CCCCCCCCHHHHHHHCCHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEE
Q ss_conf 85553100012232047674034787198587410133136783569999864167730003665416898311310058
Q gi|254780900|r 218 IDTSVEGVYCEGISNITLEDIRGAADFGYCIKFLAMARRKGKGIIRYVYPVLLKYDSVMALVDGITNAVVIETNGLGKLT 297 (438)
Q Consensus 218 ~~~~~~~v~~~gI~~i~~~di~~a~~~g~~ikli~~~~~~~~~i~~~V~P~li~~~~~la~v~g~~Nai~i~~~~~g~~~ 297 (438)
. ..+...-|-.=+.|.-++.|.+.|-.|+....-... .|- .+. +..++.- ++.-.+|....+. --+.
T Consensus 199 E---a~ELa~~GAkVlHp~ti~pa~~~~Ipi~v~nTf~p~-~GT--~I~----~~~~~~~--~~~V~gIa~~~~~-~~i~ 265 (402)
T PRK06635 199 E---MLELASLGAKVLHPRSVELAKKYNVPLRVRSSFSEE-PGT--LIT----EEEEIME--QPVVTGIAFDKDE-AKVT 265 (402)
T ss_pred H---HHHHHHCCCCCCCHHHHHHHHHCCCEEEEEECCCCC-CCE--EEE----CCCCCCC--CCCEEEEECCCHH-HHHH
T ss_conf 9---999997698756788899999749808998567898-973--995----3886443--4430134213214-4310
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCCCCC--C----------CCCCCCCCCCCCCCCCCCHHHCCC-CEEEEEEE----
Q ss_conf 972687666102068899999974177776--5----------566667831002344388534465-32799992----
Q gi|254780900|r 298 MTGPGAGGSATASAVLGDICSIAKTNTQKS--V----------SWALGKESSSFSVIHCDGVYEEEK-EYFIRLTI---- 360 (438)
Q Consensus 298 ~~G~GAG~~~TAsaV~sDli~i~~~~~~~~--~----------~~~~~~~~~~~~~~~~~~~~~~~~-~yYLRl~v---- 360 (438)
+.| .. ...++++.+.+......... + +..+...........- -.++... ..+-++++
T Consensus 266 ~~~--~~---~~~G~~~~vf~~l~~~~i~vd~Isq~~s~~~~~~is~~v~~~d~~~~~~-~l~~~~~~~~~~~v~~~~~~ 339 (402)
T PRK06635 266 VVG--VP---DKPGIAAQIFGPLADANINVDMIVQNVSEDGKTDLTFTVPRSDLEKALE-LLEEVKDEIGAESVTYDDDI 339 (402)
T ss_pred HHC--CC---CCCCHHHHHHHHHHHCCEEEEEEEEECCCCCCEEEEEEECHHHHHHHHH-HHHHHHHHCCCCEEEECCCE
T ss_conf 104--78---8666899998888743536789997127899601899963888999999-99999974698638985996
Q ss_pred ----------CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHC
Q ss_conf ----------48887489999998866995788882267787761359999210488999999998623
Q gi|254780900|r 361 ----------RNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNG 419 (438)
Q Consensus 361 ----------~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~ 419 (438)
.+.||+.+++.+.|++++|+|..+.+ ++....+++ .+++.+.|++.|..
T Consensus 340 a~VsvVG~gm~~~~gia~r~f~aL~~~~InI~~Iss-----Se~nIs~vV-----~~~d~~~Av~aLH~ 398 (402)
T PRK06635 340 AKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIST-----SEIKISVLI-----DEKYLELAVRALHE 398 (402)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEC-----CCCEEEEEE-----CHHHHHHHHHHHHH
T ss_conf 999998887356823999999999978997699970-----568799998-----18999999999998
No 236
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=91.09 E-value=1.2 Score=24.54 Aligned_cols=109 Identities=15% Similarity=0.036 Sum_probs=60.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC----CC--CCCHHCCCHHHHHCCCCCCEEE
Q ss_conf 69999825667899999999989999997399659999982685200278----87--7102207888984488998999
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGI----DC--LRYEWFDDPLIMAGEADIDVFV 78 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~----~~--~~~~~~~d~~~li~~~~IDvVV 78 (438)
=+|.|+|+|..+++++..|.+. |. .-..|.+|+.++...+ .. ....+ .++... ..++|+||
T Consensus 20 k~vlIlGaGGaarai~~aL~~~--------g~--~~I~i~nR~~~r~~~l~~~~~~~~~~~~~-~~~~~~--~~~~dliI 86 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAEL--------GA--AKIVIVNRTLEKAKALAERFGELGIAIAY-LDLEEL--LAEADLII 86 (155)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--------CC--CEEEEEECCHHHHHHHHHHHHHCCCCEEE-CCHHHH--HCCCCEEE
T ss_conf 9999986758999999999971--------99--82288608999999999985013664010-453443--15688798
Q ss_pred ECCC--CCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 8648--88851135788886327028850417788768999987531396699
Q gi|254780900|r 79 ELIG--GEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILN 129 (438)
Q Consensus 79 EliG--g~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~ 129 (438)
.++. ........+-...+..++.|.=.+-.|. -..|.+.|+++|....
T Consensus 87 N~tp~G~~~~~~~p~~~~~~~~~~~~~D~iY~P~---~T~ll~~a~~~g~~~i 136 (155)
T cd01065 87 NTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPL---ETPLLKEARALGAKTI 136 (155)
T ss_pred ECCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCC---CCHHHHHHHHCCCEEE
T ss_conf 7677877787767678877599868986531787---8899999999839587
No 237
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.07 E-value=0.67 Score=26.32 Aligned_cols=102 Identities=13% Similarity=0.096 Sum_probs=47.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEEECCCCC
Q ss_conf 69999825667899999999989999997399659999982685200278877102207888984488998999864888
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFVELIGGE 84 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVVEliGg~ 84 (438)
++|+++|=- .+++.- .+.+. ..|..+.+.+.-. .. .........+...+.+. +.|++|==+.++
T Consensus 3 ~~iaviGGD------~Rq~~l-~~~L~-~~g~~V~~~gf~~--~~----~~~~~~~~~~~~~~~~~--~~d~iIlPvpg~ 66 (296)
T PRK08306 3 MHIAVIGGD------ARQLEL-IRKLV-ELGAKVSLVGFDQ--LD----HGFTGVAKCSSLEEALS--DVDVIILPVPGT 66 (296)
T ss_pred CEEEEECCC------HHHHHH-HHHHH-HCCCEEEEEECCC--CC----CCCCCEEEECCHHHHHH--CCCEEEECCCCC
T ss_conf 489997875------899999-99999-7799799983576--55----56676177346788872--399999788322
Q ss_pred C-C----------C-H-HHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 8-5----------1-1-3578888632702885041778876899998753139669
Q gi|254780900|r 85 D-Y----------P-A-YDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAIL 128 (438)
Q Consensus 85 ~-~----------p-A-~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l 128 (438)
. . + . .+-..+.+..|.+|.+-. + -++|.++++++|+.+
T Consensus 67 ~d~g~i~~~~~~~~~~l~~~~~~~l~~~~~vf~G~----~--~~~l~~~~~~~~~~~ 117 (296)
T PRK08306 67 NDEGEVDTVFSNEKLVLTKELLEKTPEHCTIFSGI----A--NPYLKELAETTGRKL 117 (296)
T ss_pred CCCCEEECCCCCCCCCHHHHHHHHCCCCCEEEEEC----C--CHHHHHHHHHCCCCE
T ss_conf 58963855346787632299997469998799955----9--989999999759836
No 238
>PRK06823 ornithine cyclodeaminase; Validated
Probab=91.04 E-value=0.82 Score=25.73 Aligned_cols=86 Identities=12% Similarity=0.131 Sum_probs=46.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC-----C-CCCHHCCCHHHHHCCCCCCEEE
Q ss_conf 699998256678999999999899999973996599999826852002788-----7-7102207888984488998999
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGID-----C-LRYEWFDDPLIMAGEADIDVFV 78 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~-----~-~~~~~~~d~~~li~~~~IDvVV 78 (438)
=.+||+|+|..+...++.+... .+++-+.|.+|+..+.+.+. . ......+|+.+.+.+ .|||+
T Consensus 129 ~~l~iiGtG~QA~~~l~a~~~v---------~~i~~v~v~~r~~~~~~~f~~~~~~~~~~v~~~~~~~eav~~--ADIIv 197 (315)
T PRK06823 129 KAIGIVGTGIQARMQLMYLKNV---------TDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHA--ANLIV 197 (315)
T ss_pred CEEEEECCHHHHHHHHHHHHHH---------CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHH--CCEEE
T ss_conf 5699977189999999999871---------871099994699799999999998619907994899999742--77479
Q ss_pred ECCCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 86488885113578888632702885
Q gi|254780900|r 79 ELIGGEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 79 EliGg~~~pA~~~i~~AL~~GkhVVT 104 (438)
-++...+ |-.+ ...|+.|.||..
T Consensus 198 taT~s~~-Pv~~--~~~lkpG~hi~~ 220 (315)
T PRK06823 198 TTTPSRE-PLLQ--AEDIQPGTHITA 220 (315)
T ss_pred EEECCCC-CCCC--CCCCCCCCEEEE
T ss_conf 8878999-6416--555789967984
No 239
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=91.03 E-value=0.81 Score=25.75 Aligned_cols=85 Identities=13% Similarity=0.166 Sum_probs=39.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC------C-CCCHHCCCHHHHHCCCCCCEEE
Q ss_conf 99998256678999999999899999973996599999826852002788------7-7102207888984488998999
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGID------C-LRYEWFDDPLIMAGEADIDVFV 78 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~------~-~~~~~~~d~~~li~~~~IDvVV 78 (438)
.++|+|+|.-+...++.+.. . .+++-+.|.+|+.++.+.+. + ......+++.+.+.+ .|||+
T Consensus 120 ~l~iiG~G~QA~~~~~a~~~-------v--~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~e~av~~--aDiI~ 188 (302)
T PRK06407 120 NFTIIGSGFQAETQLEGMAS-------V--YNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRD--ADTIT 188 (302)
T ss_pred EEEEEEEHHHHHHHHHHHHH-------H--CCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH--CCEEE
T ss_conf 89999665999999999997-------4--0773899980888999999999864409957994899999834--99999
Q ss_pred ECCCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 86488885113578888632702885
Q gi|254780900|r 79 ELIGGEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 79 EliGg~~~pA~~~i~~AL~~GkhVVT 104 (438)
-+|...+ |-. -..+|+.|.||..
T Consensus 189 taT~s~~-Pv~--~~~~l~~g~hi~a 211 (302)
T PRK06407 189 SITNSDT-PIF--NRKYLGDEYHVNL 211 (302)
T ss_pred EECCCCC-CCC--CHHHCCCCCEEEE
T ss_conf 9418988-671--5888799948996
No 240
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.01 E-value=1.2 Score=24.51 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 48887489999998866995788882267787761359999210488999999998623
Q gi|254780900|r 361 RNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNG 419 (438)
Q Consensus 361 ~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~ 419 (438)
...||+.+++-+.|++++|+|.-+.|-. ++....++ +.+++.+.|++.|.+
T Consensus 12 ~~~~GvaariF~aLa~~~INI~mIsQgs---SE~sIs~~-----V~~~d~~~Av~alh~ 62 (66)
T cd04924 12 RGTPGVAGRVFGALGKAGINVIMISQGS---SEYNISFV-----VAEDDGWAAVKAVHD 62 (66)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECCC---CCCEEEEE-----ECHHHHHHHHHHHHH
T ss_conf 7896779999999997799789997377---63079999-----948999999999998
No 241
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=90.84 E-value=1.4 Score=24.12 Aligned_cols=52 Identities=12% Similarity=0.215 Sum_probs=39.5
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 248887489999998866995788882267787761359999210488999999998623
Q gi|254780900|r 360 IRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNG 419 (438)
Q Consensus 360 v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~ 419 (438)
....||+-+++-+.|++++|+|.-+.|-. ++....+ -+.+++.+.|++.|.+
T Consensus 11 M~~~~Gvaar~F~aL~~~~INi~mIsQgs---SE~sIs~-----~V~~~d~~~Av~~lh~ 62 (66)
T cd04922 11 MAGTPGVAATFFSALAKANVNIRAIAQGS---SERNISA-----VIDEDDATKALRAVHE 62 (66)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECCC---CCCEEEE-----EEEHHHHHHHHHHHHH
T ss_conf 67895779999999998899789996488---7327999-----9808999999999999
No 242
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=90.76 E-value=0.78 Score=25.87 Aligned_cols=10 Identities=10% Similarity=0.079 Sum_probs=5.6
Q ss_pred CCEEEEEECH
Q ss_conf 2702885041
Q gi|254780900|r 98 RGCHVVTANK 107 (438)
Q Consensus 98 ~GkhVVTANK 107 (438)
=||.++..+.
T Consensus 100 GGKGgi~~DP 109 (411)
T COG0334 100 GGKGGIIVDP 109 (411)
T ss_pred CCCEEEECCC
T ss_conf 8752266786
No 243
>PRK08291 ornithine cyclodeaminase; Validated
Probab=90.73 E-value=1.2 Score=24.59 Aligned_cols=86 Identities=20% Similarity=0.171 Sum_probs=46.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC-------CCCHHCCCHHHHHCCCCCCEE
Q ss_conf 6999982566789999999998999999739965999998268520027887-------710220788898448899899
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDC-------LRYEWFDDPLIMAGEADIDVF 77 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~-------~~~~~~~d~~~li~~~~IDvV 77 (438)
=.++|+|+|.-+...++.+... .+++-+.|.+|+.++...+.. ......+++.+.+.+. |||
T Consensus 133 ~~l~iiG~G~QA~~~l~Al~~v---------~~i~~v~v~~r~~~~a~~f~~~~~~~~g~~v~~~~~~~~av~~a--DII 201 (330)
T PRK08291 133 SRVAVFGAGEQARLQLEALTLV---------RDIREVRVWARDAAKAEAFAAELRAALGIPVTVARDVHAALAGA--DIV 201 (330)
T ss_pred CEEEEECCHHHHHHHHHHHHHH---------CCCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHCC--CEE
T ss_conf 5699987648899999999973---------89768999838989999999999897699669929999997228--889
Q ss_pred EECCCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 986488885113578888632702885
Q gi|254780900|r 78 VELIGGEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 78 VEliGg~~~pA~~~i~~AL~~GkhVVT 104 (438)
+-++... .|-. -...|+.|.||..
T Consensus 202 vtaT~s~-~Pv~--~~~~lkpG~hI~a 225 (330)
T PRK08291 202 VTTTPSE-EPIL--KAEWLHPGLHVTA 225 (330)
T ss_pred EEEECCC-CCCC--CHHHCCCCCEEEE
T ss_conf 9976899-9501--5100699828997
No 244
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=90.71 E-value=0.56 Score=26.90 Aligned_cols=108 Identities=15% Similarity=0.118 Sum_probs=52.0
Q ss_pred EEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC-CCCCC------CCCCCCCHHC-------CCHHHHH
Q ss_conf 6999982-566789999999998999999739965999998268-52002------7887710220-------7888984
Q gi|254780900|r 5 LKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARD-KNIDR------GIDCLRYEWF-------DDPLIMA 69 (438)
Q Consensus 5 ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~-~~k~~------~~~~~~~~~~-------~d~~~li 69 (438)
|||-|.| .|.||+.+++.|.++ |. +|..+ ++- ..+.. ........++ ....+++
T Consensus 1 MkvLVTGg~GFIGs~l~~~Ll~~--------g~--~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~~~~~~ 69 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQN--------GH--DVVIL-DNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEIL 69 (338)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--------CC--EEEEE-ECCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHH
T ss_conf 91999898767999999999978--------49--89999-889887376788888614788759983279989999999
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCE-EEEECC
Q ss_conf 4889989998648888511357888863270288504177887689999875313966-996056
Q gi|254780900|r 70 GEADIDVFVELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAI-LNFEAA 133 (438)
Q Consensus 70 ~~~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~-l~~eas 133 (438)
.+..+|+|+-+-+-. .+.. ...+-......|- .. -..|.+.|+++|+. |.|-+|
T Consensus 70 ~~~~~d~V~HlAa~~-~~~~-----~~~~p~~~~~~Nv--~g--t~nllea~~~~~vkr~v~~SS 124 (338)
T PRK10675 70 HDHAIDTVIHFAGLK-AVGE-----SVQKPLEYYDNNV--NG--TLRLISAMRAANVKNLIFSSS 124 (338)
T ss_pred HHCCCCEEEECCCCC-CCCC-----HHHCHHHHHHHHH--HH--HHHHHHHHHHCCCCEEEEECC
T ss_conf 865999999898654-5462-----1109899988689--88--999999999739887999637
No 245
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=90.68 E-value=1.4 Score=23.98 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=16.9
Q ss_pred EEEEEECCCHHHHHHHHHHH
Q ss_conf 69999825667899999999
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQ 24 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~ 24 (438)
-+|.++|+|.+|+.++..|.
T Consensus 33 s~VlivG~GGlG~~~~~~La 52 (245)
T PRK05690 33 ARVLVVGLGGLGCAAAQYLA 52 (245)
T ss_pred CCEEEECCCHHHHHHHHHHH
T ss_conf 97899877777899999999
No 246
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.65 E-value=1.5 Score=23.96 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=36.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCH
Q ss_conf 9999248887489999998866995788882267787761359999210488
Q gi|254780900|r 356 IRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSG 407 (438)
Q Consensus 356 LRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e 407 (438)
+-++-.|+||-||+|+.+|++.+.+|.+-.-- -.++-.+.++.+|+..+.
T Consensus 3 iEltg~DRPGLLsei~avLsdl~~~v~~A~iw--T~~~Rva~v~yvtD~~tG 52 (74)
T cd04925 3 IELTGTDRPGLLSEVFAVLADLHCNVVEARAW--THNGRLACVIYVRDEETG 52 (74)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEE--ECCCEEEEEEEEEECCCC
T ss_conf 88713998726999999998687845887852--237717999999726789
No 247
>KOG2380 consensus
Probab=90.64 E-value=0.36 Score=28.23 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=36.2
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC--CCCCCCCCCCHHCCCHHHHHCCCCCCEEE
Q ss_conf 9872699998256678999999999899999973996599999826852--00278877102207888984488998999
Q gi|254780900|r 1 MAGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKN--IDRGIDCLRYEWFDDPLIMAGEADIDVFV 78 (438)
Q Consensus 1 Msk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~--k~~~~~~~~~~~~~d~~~li~~~~IDvVV 78 (438)
|+.+.+|||+|||+.|+=+++-+.++ |-.+ -.++|+.- .++.. ....++++.++++. .-|+|+
T Consensus 49 ~k~tl~IaIIGfGnmGqflAetli~a--------Gh~l---i~hsRsdyssaa~~y---g~~~ft~lhdlcer-hpDvvL 113 (480)
T KOG2380 49 WKATLVIAIIGFGNMGQFLAETLIDA--------GHGL---ICHSRSDYSSAAEKY---GSAKFTLLHDLCER-HPDVVL 113 (480)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHC--------CCEE---EECCCCHHHHHHHHH---CCCCCCCHHHHHHC-CCCEEE
T ss_conf 16644899971370889999999864--------8626---744750068999974---12334617778754-899799
Q ss_pred EC
Q ss_conf 86
Q gi|254780900|r 79 EL 80 (438)
Q Consensus 79 El 80 (438)
=+
T Consensus 114 lc 115 (480)
T KOG2380 114 LC 115 (480)
T ss_pred EE
T ss_conf 97
No 248
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.63 E-value=1.4 Score=24.04 Aligned_cols=50 Identities=16% Similarity=0.345 Sum_probs=38.0
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 248887489999998866995788882267787761359999210488999999998623
Q gi|254780900|r 360 IRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNG 419 (438)
Q Consensus 360 v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~ 419 (438)
....|||.+++.+.|++.+|+|.-+.+ ++-...++ +.+++.+.+++.|.+
T Consensus 10 m~~~~Gvaarif~aL~~~~Inv~~iss-----SE~~Is~v-----V~~~d~~~Av~aLh~ 59 (63)
T cd04923 10 MRSHPGVAAKMFKALAEAGINIEMIST-----SEIKISCL-----VDEDDAEKAVRALHE 59 (63)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEEC-----CCCEEEEE-----EEHHHHHHHHHHHHH
T ss_conf 478943999999999987998799982-----56779999-----808999999999998
No 249
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.61 E-value=1.4 Score=23.99 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 48887489999998866995788882267787761359999210488999999998623
Q gi|254780900|r 361 RNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNG 419 (438)
Q Consensus 361 ~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~ 419 (438)
...||+.+++-+.|++++|+|+-+.|=- ++-... --+.+++.+.|++.|-.
T Consensus 12 ~~~~Gvaar~F~~La~~~INI~mIsQGs---SEinIs-----~vV~~~d~~~Av~alH~ 62 (66)
T cd04919 12 KNMIGIAGRMFTTLADHRINIEMISQGA---SEINIS-----CVIDEKDAVKALNIIHT 62 (66)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECCC---CEEEEE-----EEEEHHHHHHHHHHHHH
T ss_conf 3596679999999998799879885278---604799-----99828999999999999
No 250
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=90.55 E-value=1.5 Score=23.90 Aligned_cols=179 Identities=11% Similarity=0.116 Sum_probs=84.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC----CCCCCCC--CC------CHHCCCHHHHHCCC
Q ss_conf 699998256678999999999899999973996599999826852----0027887--71------02207888984488
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKN----IDRGIDC--LR------YEWFDDPLIMAGEA 72 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~----k~~~~~~--~~------~~~~~d~~~li~~~ 72 (438)
|||+++|.|.||+-++-.|.+ .|.++.+ + .|+.. +..++.+ +. .....+..+. ..
T Consensus 1 MkI~I~GaGAiG~~~a~~L~~--------~g~~V~l--v-~r~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~--~~ 67 (306)
T PRK12921 1 MKIAVVGAGAVGGTFGARLLE--------AGRDVTF--L-GRSARAEALREKGLVIRSDHGDVTVPGPVITDPEEI--TG 67 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHH--------CCCCEEE--E-EECCHHHHHHHCCEEEEECCCEEEEECCCCCCCHHH--CC
T ss_conf 989999924999999999983--------6998899--9-700099999978969997797699806105080565--68
Q ss_pred CCCEEEECCCCCCC-CHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCC
Q ss_conf 99899986488885-11357888863270288504177887689999875313966996056453013189998764128
Q gi|254780900|r 73 DIDVFVELIGGEDY-PAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILKNYVEYD 151 (438)
Q Consensus 73 ~IDvVVEliGg~~~-pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~~~l~~~ 151 (438)
.+|+++=++=..+. .+.+.++..+..+..||+.--++ .+.+.|.+..-+..+. .--+.+++.. . ...
T Consensus 68 ~~D~viva~Ks~~~~~a~~~l~~~~~~~t~il~lQNG~--g~~~~l~~~~~~~~v~-~gv~~~~a~~-------~--~pg 135 (306)
T PRK12921 68 PFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGI--GHLETLEKYFGRERVL-GGVVYISAQL-------E--GDG 135 (306)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCC--CHHHHHHHHCCCCCEE-EEEEEEEEEE-------E--CCE
T ss_conf 97689997045677999999986339994899934877--5388998655755378-9999975897-------0--782
Q ss_pred CCEEEEEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 62034333142000000001006877889988787617615653223211789999999999
Q gi|254780900|r 152 EINRVYGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHKIAILSA 213 (438)
Q Consensus 152 ~i~~i~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa~ 213 (438)
.|... .++..+.+.+......+..+.+.++-+...-+...+.|+... -..|+.+-+.
T Consensus 136 ~i~~~----~~~~~~~~g~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~-~W~Kl~~N~~ 192 (306)
T PRK12921 136 VVVQR----SPALRLTFGEIDGQRSERTRAVRDALAGAGLEVVLSDNIRQD-IWRKLLFNLA 192 (306)
T ss_pred EEEEE----CCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCEECCHHHHH-HHHHHHHHHH
T ss_conf 79993----699759826889875688999999997189995761077999-9999998863
No 251
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=90.35 E-value=0.61 Score=26.62 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=6.1
Q ss_pred CCHHHHHHHHHHCC
Q ss_conf 77889988787617
Q gi|254780900|r 176 LSFQDCLEEARRQG 189 (438)
Q Consensus 176 ~~f~~al~~Aq~lG 189 (438)
.+++.|-.-|++.|
T Consensus 214 Rt~~ra~~la~~~~ 227 (429)
T PRK00045 214 RTLERAEELAEEFG 227 (429)
T ss_pred CCHHHHHHHHHHCC
T ss_conf 86778999999759
No 252
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=90.34 E-value=1.5 Score=23.78 Aligned_cols=10 Identities=20% Similarity=0.351 Sum_probs=5.7
Q ss_pred HHHHHHHCCC
Q ss_conf 9999974177
Q gi|254780900|r 315 DICSIAKTNT 324 (438)
Q Consensus 315 Dli~i~~~~~ 324 (438)
||++..++.+
T Consensus 243 aL~~AL~~g~ 252 (330)
T PRK12480 243 DLIAAVNDGT 252 (330)
T ss_pred HHHHHHHCCC
T ss_conf 9999997598
No 253
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=90.25 E-value=1.4 Score=24.18 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECC----HHHHHHHHHHHHCCCCCC
Q ss_conf 4888748999999886699578888226778776135999921048----899999999862383000
Q gi|254780900|r 361 RNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVS----GKLIRDAIECFNGKSDAI 424 (438)
Q Consensus 361 ~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~----e~~i~~ai~~i~~l~~v~ 424 (438)
.-.+|-|+++=.+|++|++|++-+.- ..+.+-+.-+++. ...++.++++|++...|.
T Consensus 12 ~~~~GFLa~vF~if~~~~vsVDlisT-------SEvsVS~tlD~~~~~~~~~~l~~l~~eL~~~g~V~ 72 (75)
T cd04912 12 LGAHGFLAKVFEIFAKHGLSVDLIST-------SEVSVSLTLDPTKNLSDQLLLDALVKDLSQIGDVE 72 (75)
T ss_pred HHHCCHHHHHHHHHHHCCCCEEEEEC-------CCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCEEE
T ss_conf 65632899999999982995589980-------55189999848875320667999999999555489
No 254
>PRK06046 alanine dehydrogenase; Validated
Probab=90.22 E-value=1.1 Score=24.75 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=44.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC------C-CCCHHCCCHHHHHCCCCCCEE
Q ss_conf 699998256678999999999899999973996599999826852002788------7-710220788898448899899
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGID------C-LRYEWFDDPLIMAGEADIDVF 77 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~------~-~~~~~~~d~~~li~~~~IDvV 77 (438)
-+++|+|+|..+...++.+..- .+++-+.|.+|+.++.+.+. . ......++..+.. +.|+|
T Consensus 130 ~~l~iiG~G~Qa~~~~~al~~v---------~~i~~i~v~~r~~~~~~~fa~~~~~~~~~~v~~~~~~~~~~---~aDiI 197 (326)
T PRK06046 130 KVIGIIGAGNQARTQLEALSRV---------FDLEEVRVYDRTKESCEKFISEMSDFVPCEIVYEEDVEEAC---DCDIL 197 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHHH---------CCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEECCCHHHHH---CCCEE
T ss_conf 5589965708899999999973---------89778999918999999999999865598659739999982---79999
Q ss_pred EECCCCCCCCHHHHHHHHHHCCEEEE
Q ss_conf 98648888511357888863270288
Q gi|254780900|r 78 VELIGGEDYPAYDAVRIALMRGCHVV 103 (438)
Q Consensus 78 VEliGg~~~pA~~~i~~AL~~GkhVV 103 (438)
+-++...+ |-.+ ...|+.|.||.
T Consensus 198 ~taT~s~~-P~~~--~~~l~pG~hi~ 220 (326)
T PRK06046 198 VTTTPSRK-PVVK--ADWVKEGTHIN 220 (326)
T ss_pred EEEECCCC-CEEC--CCCCCCCCEEE
T ss_conf 99828998-4514--43357871774
No 255
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=90.08 E-value=1.4 Score=24.12 Aligned_cols=106 Identities=19% Similarity=0.260 Sum_probs=54.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC-CCCCCCCHHCCCHHHHHCCCCCCEEEEC-CC
Q ss_conf 699998256678999999999899999973996599999826852002-7887710220788898448899899986-48
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDR-GIDCLRYEWFDDPLIMAGEADIDVFVEL-IG 82 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~-~~~~~~~~~~~d~~~li~~~~IDvVVEl-iG 82 (438)
-+|+|-|||+||+.+++.|.+. |..+. +++-+..+.. ........+. +..+++ .-++||++-+ ++
T Consensus 29 k~VaIqG~GnVG~~~A~~l~~~--------Gakvv---v~d~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~DIl~PcA~~ 95 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEE--------GAKLI---VADINEEAVARAAELFGATVV-APEEIY-SVDADVFAPCALG 95 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--------CCEEE---EEECCHHHHHHHHHCCCCEEE-CCHHHH-CCCCCEEEECCCC
T ss_conf 9999989879999999999967--------99799---982688999999856898893-733232-2777688651411
Q ss_pred CCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 88851135788886327028850417788768999987531396699
Q gi|254780900|r 83 GEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILN 129 (438)
Q Consensus 83 g~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~ 129 (438)
+. ...+-+. .|+...=|=-||-.+.. ++..+.-+++|+.+.
T Consensus 96 ~~--i~~~~a~-~i~ak~I~e~AN~p~t~---~~~~~~L~~rgI~~i 136 (200)
T cd01075 96 GV--INDDTIP-QLKAKAIAGAANNQLAD---PRHGQMLHERGILYA 136 (200)
T ss_pred CC--CCHHHHH-HCCCCEEEECCCCCCCC---HHHHHHHHHCCEEEE
T ss_conf 54--6899998-70896997356799999---789999985992996
No 256
>KOG2018 consensus
Probab=90.03 E-value=0.28 Score=28.94 Aligned_cols=91 Identities=21% Similarity=0.229 Sum_probs=53.3
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHCCC-CEEEEE---EEECCCCCC--------------------------CCCCC
Q ss_conf 999825667899999999989999997399-659999---982685200--------------------------27887
Q gi|254780900|r 7 VGVAGLGTVGSALIRSIQKREGRFKDLDQH-SFVVSA---ISARDKNID--------------------------RGIDC 56 (438)
Q Consensus 7 IgiiG~G~VG~~~~~~l~~~~~~l~~~~g~-~i~i~~---i~~r~~~k~--------------------------~~~~~ 56 (438)
|-++|+|.||+-++..|.+ .|+ +++++- |+-.++++. -.++.
T Consensus 77 VVVVG~GgVGSwv~nmL~R--------SG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIda 148 (430)
T KOG2018 77 VVVVGAGGVGSWVANMLLR--------SGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDA 148 (430)
T ss_pred EEEEECCCHHHHHHHHHHH--------HCCCEEEEECHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEECH
T ss_conf 9999168522999999998--------26863899531014575632235246765388168999999985286012008
Q ss_pred CCCHHCCCHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEEC
Q ss_conf 71022078889844889989998648888511357888863270288504
Q gi|254780900|r 57 LRYEWFDDPLIMAGEADIDVFVELIGGEDYPAYDAVRIALMRGCHVVTAN 106 (438)
Q Consensus 57 ~~~~~~~d~~~li~~~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTAN 106 (438)
....|+.+-.+-+...+.|-||++|...++ --++...|-++|..|+++-
T Consensus 149 r~~l~~~~s~edll~gnPdFvvDciDNidt-KVdLL~y~~~~~l~Viss~ 197 (430)
T KOG2018 149 RNMLWTSSSEEDLLSGNPDFVVDCIDNIDT-KVDLLEYCYNHGLKVISST 197 (430)
T ss_pred HHHHCCCCCHHHHHCCCCCEEEEHHHHHHH-HHHHHHHHHHCCCCEEECC
T ss_conf 776318775223422799857671210212-5579999987698567336
No 257
>PRK08618 ornithine cyclodeaminase; Validated
Probab=90.02 E-value=1 Score=25.00 Aligned_cols=167 Identities=18% Similarity=0.203 Sum_probs=79.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC------C-CCCHHCCCHHHHHCCCCCCEE
Q ss_conf 699998256678999999999899999973996599999826852002788------7-710220788898448899899
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGID------C-LRYEWFDDPLIMAGEADIDVF 77 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~------~-~~~~~~~d~~~li~~~~IDvV 77 (438)
=.++|+|+|..+...++.+.. -.+++-+.+.+|+.++.+.+. . -.....+++.+.+.+. |||
T Consensus 128 ~~l~iiGaG~QA~~~~~a~~~---------v~~i~~v~v~~r~~~~~~~f~~~~~~~~g~~v~~~~~~~~av~~a--DiV 196 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLA---------VRDIEKVRVYSRTFEKAYAFAQEIQSKFNTEIYVVESADEAIEEA--DII 196 (325)
T ss_pred CEEEEECCHHHHHHHHHHHHH---------CCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHC--CEE
T ss_conf 569997560799999999986---------089668999947999999999999875099669958999998439--889
Q ss_pred EECCCCCCCCHHHHHHHHHHCCEEEEEE--CHHHHHHHHHHHHHHHHHCCCEE-EEECCCCCHHHHHHHHHHHH-HCCCC
Q ss_conf 9864888851135788886327028850--41778876899998753139669-96056453013189998764-12862
Q gi|254780900|r 78 VELIGGEDYPAYDAVRIALMRGCHVVTA--NKALIASHGKDLALLAQKNNAIL-NFEAAVAGGIPIIRILKNYV-EYDEI 153 (438)
Q Consensus 78 VEliGg~~~pA~~~i~~AL~~GkhVVTA--NKallA~~g~eL~~lA~~~gv~l-~~easV~ggiPii~~l~~~l-~~~~i 153 (438)
+-++...+ |- ....++.|.||... ...-..+-..++..-|. .+.. -.|++..-.--++..+++++ ..++|
T Consensus 197 ~taT~s~~-Pv---~~~~l~~g~hi~aiGs~~p~~~El~~~~l~~a~--~vvvD~~~~~~~e~Gdl~~~~~~g~~~~~~i 270 (325)
T PRK08618 197 VTVTNAKT-PV---FSEKLKKGVHINAVGSFRPDMQEIPSEAIARAD--KVVVESKEAALEETGDLIVPLKEGLIKKDDI 270 (325)
T ss_pred EEECCCCC-CC---CCCCCCCCEEECCCCCCCCCCCCCCHHHHHHCC--EEEECCHHHHHHHHHHHHHHHHHCCCCHHHC
T ss_conf 99259998-64---454358871751324689863457899995199--8999878998774232677997188775423
Q ss_pred E-EEEEEECCCHHH-------HEEHHHCCCCCHHH------HHHHHHHCCC
Q ss_conf 0-343331420000-------00001006877889------9887876176
Q gi|254780900|r 154 N-RVYGIINGTCNY-------ILSHMNNLGLSFQD------CLEEARRQGY 190 (438)
Q Consensus 154 ~-~i~GIlnGT~ny-------IL~~m~~~g~~f~~------al~~Aq~lGy 190 (438)
. ++.-+++|..-- ++.+ .-|...+| +++.|.+.|.
T Consensus 271 ~~elg~v~~g~~~gr~~~~~itvf~--s~Glai~Dla~A~~vy~~A~~~g~ 319 (325)
T PRK08618 271 HGELGQIISGEIAGRESDEEITLFK--SVGLAVVDIVVAKYIYEKAVENGV 319 (325)
T ss_pred CCCHHHHHCCCCCCCCCCCCCEEEE--CCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 0459998769988888999819998--988699999999999999997399
No 258
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.98 E-value=0.79 Score=25.81 Aligned_cols=86 Identities=23% Similarity=0.263 Sum_probs=46.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC----CCCCCCCH--HCCCHHHHHCCCCCCEEE
Q ss_conf 699998256678999999999899999973996599999826852002----78877102--207888984488998999
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDR----GIDCLRYE--WFDDPLIMAGEADIDVFV 78 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~----~~~~~~~~--~~~d~~~li~~~~IDvVV 78 (438)
.||+++|+|.-|.++++.|.++ |.. +...-+++..... ........ +-.+...+. .++|+||
T Consensus 15 k~v~V~GlG~sG~s~a~~L~~~--------G~~--v~~~D~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~--~~~d~vV 82 (481)
T PRK01438 15 LRVVVAGLGVSGFPAADALHEL--------GAS--VTVVADGDDDRSRERAALLEVLGATVRLGDGETTLP--EGTELVV 82 (481)
T ss_pred CEEEEEEECHHHHHHHHHHHHC--------CCE--EEEEECCCCCCCHHHHHHHHHCCCEEEECCCHHHHH--CCCCEEE
T ss_conf 9899995758899999999967--------998--999979987448689998885498899688756662--4899999
Q ss_pred ECCCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 86488885113578888632702885
Q gi|254780900|r 79 ELIGGEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 79 EliGg~~~pA~~~i~~AL~~GkhVVT 104 (438)
=- .|+. |....+..|.++|..|++
T Consensus 83 ~S-PGI~-~~~p~~~~a~~~gi~i~~ 106 (481)
T PRK01438 83 TS-PGWR-PTHPLLAAAAEAGIPVWG 106 (481)
T ss_pred EC-CCCC-CCCHHHHHHHHCCCCEEC
T ss_conf 89-9789-989999999986993861
No 259
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=89.98 E-value=1.3 Score=24.35 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=19.1
Q ss_pred EEEEECCHHHHHHHHHHHHCCCCC
Q ss_conf 992104889999999986238300
Q gi|254780900|r 400 MITHKVSGKLIRDAIECFNGKSDA 423 (438)
Q Consensus 400 iiTh~~~e~~i~~ai~~i~~l~~v 423 (438)
++||..+-.++++|++...+-+..
T Consensus 313 lIt~~~~le~~~~Af~~a~~~~~~ 336 (343)
T PRK09880 313 LLSAEYPFTDLEEALIFAGDKTQA 336 (343)
T ss_pred EEEEEEEHHHHHHHHHHHHCCCCC
T ss_conf 588798799999999984287981
No 260
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=89.89 E-value=1.4 Score=24.08 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=38.5
Q ss_pred EEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHC---C-CCCCEEEE
Q ss_conf 6999982-56678999999999899999973996599999826852002788771022078889844---8-89989998
Q gi|254780900|r 5 LKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAG---E-ADIDVFVE 79 (438)
Q Consensus 5 ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~---~-~~IDvVVE 79 (438)
|||||+| -|.+|+.+++-.. ...-++++| +|+.+|-.... .....-.|..++-. + ..-|+||.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~----------~RGHeVTAi-vRn~~K~~~~~-~~~i~q~Difd~~~~a~~l~g~DaVIs 68 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEAL----------KRGHEVTAI-VRNASKLAARQ-GVTILQKDIFDLTSLASDLAGHDAVIS 68 (211)
T ss_pred CEEEEEECCCHHHHHHHHHHH----------HCCCEEEEE-EECHHHCCCCC-CCEEECCCCCCHHHHHHHHCCCCEEEE
T ss_conf 907899537456799999998----------679804899-80767665223-530200022274566766358766997
Q ss_pred CCCCC
Q ss_conf 64888
Q gi|254780900|r 80 LIGGE 84 (438)
Q Consensus 80 liGg~ 84 (438)
..|..
T Consensus 69 A~~~~ 73 (211)
T COG2910 69 AFGAG 73 (211)
T ss_pred ECCCC
T ss_conf 21578
No 261
>pfam00208 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase.
Probab=89.88 E-value=1.7 Score=23.53 Aligned_cols=106 Identities=21% Similarity=0.238 Sum_probs=54.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC--CCCCCCCC-------------------CHHCC
Q ss_conf 6999982566789999999998999999739965999998268520--02788771-------------------02207
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI--DRGIDCLR-------------------YEWFD 63 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k--~~~~~~~~-------------------~~~~~ 63 (438)
-+|+|-|||+||+.+++.|.+. | ..+++++|.+... +.+++.+. ..+.
T Consensus 33 ~~v~IqGfGnVG~~~a~~l~~~--------G--akvvavsD~~G~i~~~~Gldi~~l~~~~~~~~~~~~~~~~~~~~~i- 101 (237)
T pfam00208 33 KTVAVQGFGNVGSYAAEKLLEL--------G--AKVVAVSDSSGYIYDPNGIDIEELLELKEEGGGRVVEYAGSGAEYI- 101 (237)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--------C--CEEEEEECCCCEEECCCCCCHHHHHHHHHHHCCEEECCCCCCCEEC-
T ss_conf 9999989889999999999987--------9--9699998287679999999999999999971984312466575344-
Q ss_pred CHHHHHCCCCCCEEEEC-CCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 88898448899899986-4888851135788886327028850417788768999987531396699
Q gi|254780900|r 64 DPLIMAGEADIDVFVEL-IGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILN 129 (438)
Q Consensus 64 d~~~li~~~~IDvVVEl-iGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~ 129 (438)
+..+++. -++||++-+ +++. ...+-+. .|++..=|=-||-.+ ....++ .-+++|+.+.
T Consensus 102 ~~~~~~~-~~~DIliPaA~~~~--I~~~na~-~i~ak~I~EgAN~p~-t~eA~~---~L~~rgI~vi 160 (237)
T pfam00208 102 SGEELWE-IDCDILVPCATQNE--INEENAK-LIKAKAVVEGANMPT-TPEADE---ILEERGILYA 160 (237)
T ss_pred CCCCCCC-CCCCEEEECCCCCC--CCHHHHH-HCCCCEEEECCCCCC-CHHHHH---HHHHCCCEEE
T ss_conf 8710004-76668864455688--9989998-627548975378988-978999---9998899896
No 262
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=89.77 E-value=1.7 Score=23.47 Aligned_cols=50 Identities=14% Similarity=0.343 Sum_probs=38.3
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 248887489999998866995788882267787761359999210488999999998623
Q gi|254780900|r 360 IRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNG 419 (438)
Q Consensus 360 v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~ 419 (438)
....|||.+++.+.|++++|+|.-+.+ ++-...++ +.+++.+.+++.|.+
T Consensus 10 m~~~~Gvaarif~aL~~~~Ini~mIss-----SE~~Is~v-----V~~~~~~~Av~~Lh~ 59 (63)
T cd04936 10 MRSHPGVAAKMFEALAEAGINIEMIST-----SEIKISCL-----IDEDDAEKAVRALHE 59 (63)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEEC-----CCCEEEEE-----ECHHHHHHHHHHHHH
T ss_conf 478922999999999987998599983-----56669999-----829999999999998
No 263
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=89.71 E-value=1.7 Score=23.44 Aligned_cols=91 Identities=11% Similarity=0.141 Sum_probs=47.4
Q ss_pred CC-CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC-C--CCCCC---------CCCCCHHCCCHHH
Q ss_conf 98-7269999825667899999999989999997399659999982685-2--00278---------8771022078889
Q gi|254780900|r 1 MA-GVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDK-N--IDRGI---------DCLRYEWFDDPLI 67 (438)
Q Consensus 1 Ms-k~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~-~--k~~~~---------~~~~~~~~~d~~~ 67 (438)
|. ++.||+|+|.|.||+-++-.|.+ .|.++.+ + .|+. + +.+++ .......++++.+
T Consensus 1 M~~~~~kI~IiGaGAiG~~~a~~L~~--------aG~~V~l--i-~r~~~~ai~~~Gl~i~~~~g~~~~~~~~~~~~~~~ 69 (313)
T PRK06249 1 MDSETPRIAIIGTGAIGGFYGAMLAR--------AGFDVHF--L-LRSDYEAVRENGLQVDSVHGDFHLPQVQAYRSAED 69 (313)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH--------CCCCEEE--E-ECCHHHHHHHCCEEEEECCCCEEECCCEEECCHHH
T ss_conf 99998889999914999999999996--------6995699--9-67559999868859996698289768402369778
Q ss_pred HHCCCCCCEEEECCCCCCC-CHHHHHHHHHHCCEEEEEE
Q ss_conf 8448899899986488885-1135788886327028850
Q gi|254780900|r 68 MAGEADIDVFVELIGGEDY-PAYDAVRIALMRGCHVVTA 105 (438)
Q Consensus 68 li~~~~IDvVVEliGg~~~-pA~~~i~~AL~~GkhVVTA 105 (438)
+ +.+|+|+=++=..+. .+.+.++..+..+-.|++.
T Consensus 70 ~---~~~D~viv~vKs~~~~~~~~~l~~~~~~~t~il~l 105 (313)
T PRK06249 70 M---PPCDWVLVGLKTTANALLAPLIPQVAAPGAKVLLL 105 (313)
T ss_pred C---CCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 3---99658999536677899999878644899589994
No 264
>pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Probab=89.65 E-value=1.7 Score=23.41 Aligned_cols=21 Identities=43% Similarity=0.607 Sum_probs=18.1
Q ss_pred EEEEEECCC-HHHHHHHHHHHH
Q ss_conf 699998256-678999999999
Q gi|254780900|r 5 LKVGVAGLG-TVGSALIRSIQK 25 (438)
Q Consensus 5 ikIgiiG~G-~VG~~~~~~l~~ 25 (438)
|||+|+|+| +||+.++-.|..
T Consensus 1 mKV~IIGagg~VG~~~A~~l~~ 22 (142)
T pfam00056 1 VKVAVVGAGGGVGSSLAFALAL 22 (142)
T ss_pred CEEEEECCCHHHHHHHHHHHHC
T ss_conf 9899989877899999999974
No 265
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=89.56 E-value=1.8 Score=23.36 Aligned_cols=69 Identities=25% Similarity=0.237 Sum_probs=38.3
Q ss_pred CCCC---EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC--CCC--------C--CHHCCCH
Q ss_conf 9872---69999825667899999999989999997399659999982685200278--877--------1--0220788
Q gi|254780900|r 1 MAGV---LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGI--DCL--------R--YEWFDDP 65 (438)
Q Consensus 1 Msk~---ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~--~~~--------~--~~~~~d~ 65 (438)
|++| =||+|+|+|.||+.++-.+.. .+.. ++ ...|.+..+.++. ++. . ..-..|+
T Consensus 1 ~~~~~~~~KV~IIGaG~VG~~~A~~l~~--------~~l~-ei-vLiDi~~~~a~g~a~Dl~h~~~~~~~~~~v~~~~dy 70 (322)
T PTZ00082 1 MAKMIPRKKISLIGSGNIGGVMAYLIQL--------KNLA-DV-VLFDIVPNIPAGKALDIMHANVMAGSNCKVIGTNSY 70 (322)
T ss_pred CCCCCCCCCEEEECCCHHHHHHHHHHHC--------CCCC-EE-EEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCH
T ss_conf 9110179829998969899999999963--------8997-79-999788980088999876636446888579837999
Q ss_pred HHHHCCCCCCEEEECCC
Q ss_conf 89844889989998648
Q gi|254780900|r 66 LIMAGEADIDVFVELIG 82 (438)
Q Consensus 66 ~~li~~~~IDvVVEliG 82 (438)
.++ .+.|+||=.-|
T Consensus 71 ~~~---~~aDiVVitAG 84 (322)
T PTZ00082 71 DDI---AGSDVVIVTAG 84 (322)
T ss_pred HHH---CCCCEEEECCC
T ss_conf 997---79999998988
No 266
>pfam00670 AdoHcyase_NAD S-adenosyl-L-homocysteine hydrolase, NAD binding domain.
Probab=89.50 E-value=0.91 Score=25.38 Aligned_cols=85 Identities=15% Similarity=0.152 Sum_probs=50.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEEECCCCCC
Q ss_conf 99998256678999999999899999973996599999826852002788771022078889844889989998648888
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFVELIGGED 85 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVVEliGg~~ 85 (438)
++.++|||-+|+|+++.++. .|..+ .|...|+-+.-..-.+...+ ....+.+ +..|+||-+||..+
T Consensus 25 ~vvV~GYG~~GkGvA~~~rg--------~Ga~V---~V~EvDPi~aleA~mdGf~V-~~~~ea~--~~aDi~VTaTG~~~ 90 (162)
T pfam00670 25 VAVVCGYGDVGKGCAASLKG--------QGARV---IVTEIDPICALQAAMEGFQV-VTLEEVV--KKADIFVTTTGNKD 90 (162)
T ss_pred EEEEECCCCCCHHHHHHHHC--------CCCEE---EEEECCCHHHHHHHHCCCCC-CCHHHHH--HCCCEEEECCCCCC
T ss_conf 89996787667779998622--------99989---99947930699998649954-7888986--04999999248977
Q ss_pred CCHHHHHHHHHHCCEEEEEECH
Q ss_conf 5113578888632702885041
Q gi|254780900|r 86 YPAYDAVRIALMRGCHVVTANK 107 (438)
Q Consensus 86 ~pA~~~i~~AL~~GkhVVTANK 107 (438)
..-.++.. .++.|.= .||-
T Consensus 91 vi~~eh~~-~mKdgaI--laN~ 109 (162)
T pfam00670 91 IITGEHMA-KMKNDAI--VCNI 109 (162)
T ss_pred CCCHHHHH-HHCCCEE--EECC
T ss_conf 47399999-8448869--9877
No 267
>PRK06487 glycerate dehydrogenase; Provisional
Probab=89.50 E-value=1.8 Score=23.33 Aligned_cols=15 Identities=7% Similarity=0.144 Sum_probs=6.0
Q ss_pred ECCHHHHHHHHHHHH
Q ss_conf 048899999999862
Q gi|254780900|r 404 KVSGKLIRDAIECFN 418 (438)
Q Consensus 404 ~~~e~~i~~ai~~i~ 418 (438)
++.+.-...+++++.
T Consensus 291 ea~~~~~~~~~~ni~ 305 (317)
T PRK06487 291 EARQRIVGQLAENAR 305 (317)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999999
No 268
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.49 E-value=1.4 Score=24.02 Aligned_cols=50 Identities=14% Similarity=0.435 Sum_probs=41.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEE
Q ss_conf 279999248887489999998866995788882267787761359999210
Q gi|254780900|r 354 YFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHK 404 (438)
Q Consensus 354 yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~ 404 (438)
|.|.+...|++|.|..||..|-+-...|.++----.. .+..+.+++||..
T Consensus 1 ylLk~~~~DR~GLLHDVt~~L~eLeltI~rvKVsTtP-dgrv~DlFfiTD~ 50 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTP-DGRVLDLFFITDA 50 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHEEEEEEEEEEECCC-CCCEEEEEEEECC
T ss_conf 9489998256733888999987612788998987189-9828999999275
No 269
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=89.46 E-value=1.8 Score=23.31 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=17.8
Q ss_pred EEEEEECCCHHHHHHHHHHH
Q ss_conf 69999825667899999999
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQ 24 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~ 24 (438)
-||.++|+|.+|+.+++.|.
T Consensus 2 skVlivG~GglG~~~~~~La 21 (134)
T pfam00899 2 SRVLVVGAGGLGSPAAEYLA 21 (134)
T ss_pred CEEEEECCCHHHHHHHHHHH
T ss_conf 88999898889999999999
No 270
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.43 E-value=1.1 Score=24.69 Aligned_cols=86 Identities=22% Similarity=0.208 Sum_probs=47.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC----CCCCCCCCHH--CCCHHHHHCCCCCCEEE
Q ss_conf 69999825667899999999989999997399659999982685200----2788771022--07888984488998999
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNID----RGIDCLRYEW--FDDPLIMAGEADIDVFV 78 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~----~~~~~~~~~~--~~d~~~li~~~~IDvVV 78 (438)
=||.++|+|.-|.+.++.|.++ |.. + .+.|.+.... ..+......+ -.++.+++. .++|+||
T Consensus 10 k~i~viGlG~sG~s~a~~L~~~--------G~~--V-~~~D~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~-~~~d~vV 77 (450)
T PRK02472 10 KKVLVLGLAKSGYAAAKLLHKL--------GAN--V-TVNDGKPFSENPAAQELLEEGIKVICGSHPLELLD-ENFDLMV 77 (450)
T ss_pred CEEEEEEECHHHHHHHHHHHHC--------CCE--E-EEEECCCCCCCHHHHHHHHCCCEEEECCCHHHHCC-CCCCEEE
T ss_conf 9899997789999999999988--------698--9-99848866579899999967998997888078605-7887999
Q ss_pred ECCCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 86488885113578888632702885
Q gi|254780900|r 79 ELIGGEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 79 EliGg~~~pA~~~i~~AL~~GkhVVT 104 (438)
=- .|+. +....+.+|.++|+.|++
T Consensus 78 ~S-PgI~-~~~p~~~~a~~~~i~v~~ 101 (450)
T PRK02472 78 KN-PGIP-YDNPMVEEALEKGIPIIT 101 (450)
T ss_pred EC-CCCC-CCCHHHHHHHHCCCCEEE
T ss_conf 89-9879-999999999986996743
No 271
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.39 E-value=0.85 Score=25.62 Aligned_cols=86 Identities=17% Similarity=0.140 Sum_probs=45.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC----CCCCCHH-CCCHHHHHCCCCCCEEEE
Q ss_conf 69999825667899999999989999997399659999982685200278----8771022-078889844889989998
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGI----DCLRYEW-FDDPLIMAGEADIDVFVE 79 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~----~~~~~~~-~~d~~~li~~~~IDvVVE 79 (438)
=||.++|+|.-|.++++.|.++ |.++ .+.|.+...++.. ..+...+ .....+.+ ..++|+||=
T Consensus 6 k~v~viGlG~sG~s~a~~L~~~--------G~~v---~~~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~-~~~~d~vV~ 73 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKN--------GAEV---AAYDAELKAERVAQIGKMFDGLVFYTGRLKDAL-DNGFDILAL 73 (445)
T ss_pred CEEEEEEECHHHHHHHHHHHHC--------CCEE---EEEECCCCCCHHHHHHHCCCCCEEEECCCHHHH-CCCCCEEEE
T ss_conf 9899999899999999999978--------9919---999799995318999743699689937863650-159999998
Q ss_pred CCCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 6488885113578888632702885
Q gi|254780900|r 80 LIGGEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 80 liGg~~~pA~~~i~~AL~~GkhVVT 104 (438)
- .|+. +....+.+|.++|+.|++
T Consensus 74 S-PgI~-~~~p~l~~a~~~gi~i~~ 96 (445)
T PRK04308 74 S-PGIS-ERQPDIEAFKQNGGRVLG 96 (445)
T ss_pred C-CCCC-CCCHHHHHHHHCCCCEEC
T ss_conf 9-9538-999999999975995715
No 272
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=89.36 E-value=1.5 Score=23.93 Aligned_cols=24 Identities=8% Similarity=0.196 Sum_probs=20.3
Q ss_pred EEEEECCHHHHHHHHHHHHCCCCC
Q ss_conf 992104889999999986238300
Q gi|254780900|r 400 MITHKVSGKLIRDAIECFNGKSDA 423 (438)
Q Consensus 400 iiTh~~~e~~i~~ai~~i~~l~~v 423 (438)
+|||..+-.++++|.+.+++=+.+
T Consensus 329 lIt~~~~Le~~~eAfe~~~~g~~~ 352 (358)
T TIGR03451 329 FVTERIGLDDVEEAFDKMHAGDVL 352 (358)
T ss_pred CEEEEEEHHHHHHHHHHHHCCCCE
T ss_conf 389998799999999998779972
No 273
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF; InterPro: IPR012729 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the divergent clade of putative ThiF proteins as found in Campylobacter..
Probab=89.32 E-value=0.67 Score=26.31 Aligned_cols=94 Identities=19% Similarity=0.206 Sum_probs=49.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC----CCCC-------------C--------CC
Q ss_conf 699998256678999999999899999973996599999826852002----7887-------------7--------10
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDR----GIDC-------------L--------RY 59 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~----~~~~-------------~--------~~ 59 (438)
=+|||+|.|.-||.++=-|.+- -+...--+|+.++-++ |+++.. .+.- + ..
T Consensus 22 a~VAicGlGGLGS~~AinLAR~--GigkLiLvDfDvveps--NLnRQqY~~s~~G~~KteAlke~i~einPy~~ie~~d~ 97 (200)
T TIGR02354 22 ASVAICGLGGLGSNVAINLARA--GIGKLILVDFDVVEPS--NLNRQQYKVSDVGKKKTEALKENISEINPYVEIEIIDE 97 (200)
T ss_pred CCEEEEECCCCHHHHHHHHHHH--CCCCEEEEEECEECCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 8278970161168999999873--0220256640432366--56132578762486217999987865088421231102
Q ss_pred HH-CCCHHHHHCCCCCCEEEECCCCCCCC-HHHHHHHHH---HCCEEEEEECH
Q ss_conf 22-07888984488998999864888851-135788886---32702885041
Q gi|254780900|r 60 EW-FDDPLIMAGEADIDVFVELIGGEDYP-AYDAVRIAL---MRGCHVVTANK 107 (438)
Q Consensus 60 ~~-~~d~~~li~~~~IDvVVEliGg~~~p-A~~~i~~AL---~~GkhVVTANK 107 (438)
++ .++...++ .|+|||+|+= |.| |+.++-.+. -.-|.+|||.=
T Consensus 98 ki~E~N~~~~f--kdaDiv~EAF---Dna~aKam~~n~vl~~ykdk~li~ASG 145 (200)
T TIGR02354 98 KIDEENLDKLF--KDADIVCEAF---DNAEAKAMLVNAVLEKYKDKKLIAASG 145 (200)
T ss_pred CCCHHHHHHHH--HCCCEEEECC---CCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 12766798784--0674788716---998899999999997678645876026
No 274
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase; InterPro: IPR005986 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor. This entry represents the subgroup of aspartate-semialdehyde dehydrogenase most commonly found in bacteria. Note that some bacteria, such as Chlamydia, contain the enzyme from the other subgroup (IPR005676 from INTERPRO) instead.; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0009086 methionine biosynthetic process, 0009088 threonine biosynthetic process.
Probab=89.29 E-value=0.46 Score=27.46 Aligned_cols=213 Identities=17% Similarity=0.168 Sum_probs=125.3
Q ss_pred EEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE-EEECCCCCCCCCCCCCCHHCCCHHH-HHCCCCCCEEEECCC
Q ss_conf 999982-5667899999999989999997399659999-9826852002788771022078889-844889989998648
Q gi|254780900|r 6 KVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSA-ISARDKNIDRGIDCLRYEWFDDPLI-MAGEADIDVFVELIG 82 (438)
Q Consensus 6 kIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~-i~~r~~~k~~~~~~~~~~~~~d~~~-li~~~~IDvVVEliG 82 (438)
+|||+| .|.||+.+++.|.++.= .++ .+.. .+.|+..++-.+.-..+.+.+--.+ -.++..|||=.=.=|
T Consensus 1 ~vAiVGATG~VGq~~lk~LeeR~F------P~~-~~~~~AS~RS~G~~~~F~gke~~v~~~~~~n~F~gekidIAlFSAG 73 (350)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNF------PID-KLVLLASERSAGRKVTFKGKELEVEEAKKENSFEGEKIDIALFSAG 73 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCC------CHH-HHHHHCCCCCCCCEEEECCCEEEEECCCCCCCCCCCEEEEEEECCC
T ss_conf 947896267479999876413678------775-5644105678885785127536601010014888770334565153
Q ss_pred CCCCCHHHHHHHHHHCCEEEEE------ECHH-HHHH---HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCC
Q ss_conf 8885113578888632702885------0417-7887---6899998753139669960564530131899987641286
Q gi|254780900|r 83 GEDYPAYDAVRIALMRGCHVVT------ANKA-LIAS---HGKDLALLAQKNNAILNFEAAVAGGIPIIRILKNYVEYDE 152 (438)
Q Consensus 83 g~~~pA~~~i~~AL~~GkhVVT------ANKa-llA~---~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~~~l~~~~ 152 (438)
|. .+++++-+|-+.|.=||= +|+. ||.. ...++.+ .+.+|..=-=-+|+..-++++++|+... +
T Consensus 74 gs--vSke~aP~a~k~g~~VIDntS~fR~D~dVPLVVPEVN~~~~~~-~~~kgIIANPNCstIqmv~~LkPl~~~~---~ 147 (350)
T TIGR01296 74 GS--VSKEFAPKAAKAGVIVIDNTSAFRMDPDVPLVVPEVNLEDLKE-FNKKGIIANPNCSTIQMVVVLKPLHDEA---K 147 (350)
T ss_pred HH--HHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEECCCCHHHHHC-CCCCCCEECCCCCHHHHHHHHHHHHHHC---C
T ss_conf 13--3488878886087579817620005789863443778477634-7888814588600777988404656306---7
Q ss_pred CEEEEEEECCCHHHHEEHHHC-----CCCCHHHHHHHHH-HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 203433314200000000100-----6877889988787-6176156532232117899999999999818855531000
Q gi|254780900|r 153 INRVYGIINGTCNYILSHMNN-----LGLSFQDCLEEAR-RQGYAEGDATFDINGVDSSHKIAILSAIAFGIDTSVEGVY 226 (438)
Q Consensus 153 i~~i~GIlnGT~nyIL~~m~~-----~g~~f~~al~~Aq-~lGyaE~DP~~Di~G~Daa~Kl~ILa~~~~g~~~~~~~v~ 226 (438)
|.|+ .=.| +| .....+|.-.|+| .++..|.+|+.|..-+=-+.|- -..+||+.-+..+++.
T Consensus 148 ikrV---vVST--------YQAVSGAG~~g~~eL~nQtka~~~~~E~~p~i~~~~~~~a~kf--~~qIAFN~~P~Id~f~ 214 (350)
T TIGR01296 148 IKRV---VVST--------YQAVSGAGNKGVEELKNQTKAVLEGKEKEPEIDALEVLKAKKF--PYQIAFNAIPHIDKFK 214 (350)
T ss_pred EEEE---EEEE--------CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCC--CCCCHHCCCCCCCCCC
T ss_conf 4589---9972--------2003542799999989999998524588855554306888882--6750300001047412
Q ss_pred HHHHHHCCHHHHHHHHHCC
Q ss_conf 1223204767403478719
Q gi|254780900|r 227 CEGISNITLEDIRGAADFG 245 (438)
Q Consensus 227 ~~gI~~i~~~di~~a~~~g 245 (438)
=.| +.=|.||.+...|..
T Consensus 215 ~dG-sGYT~EE~Km~~Et~ 232 (350)
T TIGR01296 215 DDG-SGYTKEETKMLFETR 232 (350)
T ss_pred CCC-CCCCHHHHHHHHHHH
T ss_conf 287-866806678898634
No 275
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=89.28 E-value=1.6 Score=23.73 Aligned_cols=50 Identities=10% Similarity=0.144 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 8887489999998866995788882267787761359999210488999999998623
Q gi|254780900|r 362 NFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNG 419 (438)
Q Consensus 362 DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~ 419 (438)
..||+|++..+.|++++|++-.+.|-.++ -.+.+|+ .+++.+++++.|..
T Consensus 13 ~~~gvlar~~~AL~~~gInv~a~~Q~~r~---vnvqFVV-----~~~d~~~Ai~aLH~ 62 (66)
T cd04915 13 STPGVLARGLAALAEAGIEPIAAHQSMRN---VDVQFVV-----DRDDYDNAIKALHA 62 (66)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCE---EEEEEEE-----EHHHHHHHHHHHHH
T ss_conf 74427999999999889978988647850---3689998-----27999999999999
No 276
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=89.27 E-value=1.9 Score=23.22 Aligned_cols=37 Identities=11% Similarity=-0.159 Sum_probs=17.9
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 72699998256678999999999899999973996599999
Q gi|254780900|r 3 GVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAI 43 (438)
Q Consensus 3 k~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i 43 (438)
.+-..||+|.. |..++--.+++ .+.+..|.+.+...+
T Consensus 4 ~tk~~gliG~p-i~hS~SP~ihn---~~f~~~gl~~~Y~~~ 40 (275)
T PRK00258 4 KTDLYAVIGNP-IAHSKSPFIHN---AAAKQLGLDGEYLAF 40 (275)
T ss_pred CCCEEEEECCC-CCCCCCHHHHH---HHHHHCCCCCEEEEE
T ss_conf 76289998888-24130799999---999986999389988
No 277
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.18 E-value=0.063 Score=33.55 Aligned_cols=197 Identities=18% Similarity=0.136 Sum_probs=100.1
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC----------CC----CCCC-CCCHHCCCHHH
Q ss_conf 726999982566789999999998999999739965999998268520----------02----7887-71022078889
Q gi|254780900|r 3 GVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI----------DR----GIDC-LRYEWFDDPLI 67 (438)
Q Consensus 3 k~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k----------~~----~~~~-~~~~~~~d~~~ 67 (438)
|+=||+++|.|.+|++++.+|.++. . .+.. .|+... .+ .+.+ +....++|..+
T Consensus 5 k~~KI~ViGaGawGTALA~~la~n~--------~--~v~w--~r~~~~~~~In~~~~N~kyL~~~i~Lp~~i~~t~dl~~ 72 (340)
T PRK12439 5 REPKVVVLGGGSWGTTVASICARRG--------P--TLQW--VRSEETAKDINDNHRNSRYLGNDVVLSDTLRATTDFTE 72 (340)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--------C--EEEE--ECCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHH
T ss_conf 8992899896999999999999589--------9--8999--68999999999828887689987558987289789999
Q ss_pred HHCCCCCCEEEECCCCCCCCH---HHH---HHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH
Q ss_conf 844889989998648888511---357---88886327028850417788768999987531396699605645301318
Q gi|254780900|r 68 MAGEADIDVFVELIGGEDYPA---YDA---VRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPII 141 (438)
Q Consensus 68 li~~~~IDvVVEliGg~~~pA---~~~---i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii 141 (438)
.+++. |+||=++ |+ ++. +...++....+|++-|++-...+.-+ -
T Consensus 73 a~~~a--diii~av-----PS~~~r~~~~~l~~~l~~~~~iv~~sKGie~~t~~~~-----------------------s 122 (340)
T PRK12439 73 AANCA--DVVVMGV-----PSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRM-----------------------S 122 (340)
T ss_pred HHHCC--CEEEEEC-----CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCH-----------------------H
T ss_conf 98269--9899936-----8089999999998655788759973275027999879-----------------------9
Q ss_pred HHHHHHHHCCCCEEEEEEECCCHHH--H----EEHHHC--CCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH----H
Q ss_conf 9998764128620343331420000--0----000100--68778899887876176156532232117899999----9
Q gi|254780900|r 142 RILKNYVEYDEINRVYGIINGTCNY--I----LSHMNN--LGLSFQDCLEEARRQGYAEGDATFDINGVDSSHKI----A 209 (438)
Q Consensus 142 ~~l~~~l~~~~i~~i~GIlnGT~ny--I----L~~m~~--~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl----~ 209 (438)
..+++-+.+..+ ++|+|-+-= | .|.+.- ....+.+-+++.-.--|--..++.|+-|.-.+-=+ +
T Consensus 123 eii~e~l~~~~~----~vLSGPsfA~Eva~~~pta~viAs~~~~~a~~l~~lf~~~~frvy~s~DviGvElgGAlKNViA 198 (340)
T PRK12439 123 QIIEEVLPGHPA----GILAGPNIAREVAEGYAAAAVLAMPDQHLATRLSALFRTRRFRVYTTDDVVGVEMAGALKNVFA 198 (340)
T ss_pred HHHHHHCCCCCE----EEECCCCHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 999987579970----6863874499997089851366468889999999985868779997477044368799999999
Q ss_pred HHHHHHHCCCCC---CCCCHHHHHHHCCHHHHHHHHHCCCEEE
Q ss_conf 999998188555---3100012232047674034787198587
Q gi|254780900|r 210 ILSAIAFGIDTS---VEGVYCEGISNITLEDIRGAADFGYCIK 249 (438)
Q Consensus 210 ILa~~~~g~~~~---~~~v~~~gI~~i~~~di~~a~~~g~~ik 249 (438)
|-+-++-|..+- ..-+-++|+.++ .+++..+|....
T Consensus 199 IaaGi~dGl~~G~Na~aalitrgl~Em----~rl~~~~G~~~~ 237 (340)
T PRK12439 199 IAVGMGYSLGIGENTRALVIARALREM----TKLGVAMGGHRE 237 (340)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH----HHHHHHCCCCCC
T ss_conf 999998145899888999999999999----999997199966
No 278
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=89.17 E-value=1.5 Score=23.90 Aligned_cols=260 Identities=15% Similarity=0.182 Sum_probs=111.3
Q ss_pred ECCCCCHHHHHHH-----HHHHHHCCCCEEEEEEECCCHH-HHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 0564530131899-----9876412862034333142000-000001006877889988787617615653223211789
Q gi|254780900|r 131 EAAVAGGIPIIRI-----LKNYVEYDEINRVYGIINGTCN-YILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDS 204 (438)
Q Consensus 131 easV~ggiPii~~-----l~~~l~~~~i~~i~GIlnGT~n-yIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Da 204 (438)
...-.+.-|++.. +...+..++|-=+.|-.-.|-+ + ++-.-..|.+|+.++ -|-.+|--|-+=--||+|+-+
T Consensus 149 t~~~~~~a~i~~~~~~~~l~~~~~~~~v~Vv~GF~G~~~~G~-~tTLGRGGSD~SA~~-laa~l~Ad~~~I~TDVdGI~T 226 (447)
T COG0527 149 TDSNHGNARILDEDSERRLLRLLEEGKVPVVAGFQGINEDGE-TTTLGRGGSDYSAAA-LAAALGADEVEIWTDVDGVYT 226 (447)
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCEEECCCCC-EEEECCCCHHHHHHH-HHHHCCCCEEEEEECCCCCCC
T ss_conf 357666553103556666788744697799518665169998-898479847889999-999719988999987887756
Q ss_pred HHH-----HHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCC
Q ss_conf 999-----999999981885553100012232047674034787198587410133136783569999864167730003
Q gi|254780900|r 205 SHK-----IAILSAIAFGIDTSVEGVYCEGISNITLEDIRGAADFGYCIKFLAMARRKGKGIIRYVYPVLLKYDSVMALV 279 (438)
Q Consensus 205 a~K-----l~ILa~~~~g~~~~~~~v~~~gI~~i~~~di~~a~~~g~~ikli~~~~~~~~~i~~~V~P~li~~~~~la~v 279 (438)
|.- ...|..+.|. +..+...-|-.-+.+.-++.|.+.+-.++....-.....| -.+.+..-+..
T Consensus 227 aDPRiVp~Ar~i~~isye---Ea~ELA~~GAkVLHprav~pa~~~~Ip~~i~~t~~p~~~G--TlI~~~~~~~~------ 295 (447)
T COG0527 227 ADPRIVPDARLLPEISYE---EALELAYLGAKVLHPRAVEPAMRSGIPLRIKNTFNPDAPG--TLITAETESDE------ 295 (447)
T ss_pred CCCCCCCCCEECCCCCHH---HHHHHHHCCCHHCCHHHHHHHHHCCCCEEEEECCCCCCCC--EEEECCCCCCC------
T ss_conf 899778864576846999---9999997785214998888998769918997169999995--39956776767------
Q ss_pred CCCCCEEEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-------CCCCCCCCHHHCCC
Q ss_conf 66541689831131005897268766610206889999997417777655666678310-------02344388534465
Q gi|254780900|r 280 DGITNAVVIETNGLGKLTMTGPGAGGSATASAVLGDICSIAKTNTQKSVSWALGKESSS-------FSVIHCDGVYEEEK 352 (438)
Q Consensus 280 ~g~~Nai~i~~~~~g~~~~~G~GAG~~~TAsaV~sDli~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 352 (438)
..-.+|....+ .-.+.+.|++ ..+- .++.+.+..+.............+..... .........-....
T Consensus 296 -~~v~gIa~~~~-~~~i~v~~~~--~~~~-~g~~a~if~~l~~~~i~v~~I~q~~~~~~i~~~v~~~~~~~a~~~l~~~~ 370 (447)
T COG0527 296 -PVVKGIALDDN-VALITVSGPG--MNGM-VGFAARVFGILAEAGINVDLITQSISEVSISFTVPESDAPRALRALLEEK 370 (447)
T ss_pred -CCEEEEECCCC-EEEEEEECCC--CCCC-CCHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECHHHHHHHHHHHHHHH
T ss_conf -72488970798-5899997147--6665-24799999999975996799992367875999973445789999999988
Q ss_pred CEEE-EE--------------EECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHH
Q ss_conf 3279-99--------------92488874899999988669957888822677877613599992104889999999986
Q gi|254780900|r 353 EYFI-RL--------------TIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECF 417 (438)
Q Consensus 353 ~yYL-Rl--------------~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i 417 (438)
...+ ++ -....|||.+++.+.|++++|+|..+.. ++-.+.++ +.+.....+++.|
T Consensus 371 ~~~~~~v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~iss-----Se~~Is~v-----V~~~~~~~av~~L 440 (447)
T COG0527 371 LELLAEVEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMISS-----SEISISFV-----VDEKDAEKAVRAL 440 (447)
T ss_pred HHHCCEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEC-----CCCEEEEE-----ECCHHHHHHHHHH
T ss_conf 6314607841785599997435135967899999999747995799974-----78569999-----8428899999999
Q ss_pred H
Q ss_conf 2
Q gi|254780900|r 418 N 418 (438)
Q Consensus 418 ~ 418 (438)
-
T Consensus 441 H 441 (447)
T COG0527 441 H 441 (447)
T ss_pred H
T ss_conf 9
No 279
>PRK07340 ornithine cyclodeaminase; Validated
Probab=89.14 E-value=1.3 Score=24.25 Aligned_cols=84 Identities=17% Similarity=0.086 Sum_probs=34.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC-----CCCCHHCCCHHHHHCCCCCCEEEE
Q ss_conf 699998256678999999999899999973996599999826852002788-----771022078889844889989998
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGID-----CLRYEWFDDPLIMAGEADIDVFVE 79 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~-----~~~~~~~~d~~~li~~~~IDvVVE 79 (438)
-+++|+|+|.-+...++.+.. . .+++-+.|.+|+.++.+.+. ........++.+.+.+ .|||+-
T Consensus 126 ~~l~iiGaG~QA~~~~~a~~~-------v--~~~~~V~v~~r~~~~a~~~~~~~~~~~~~~~~~~~e~av~~--aDiI~t 194 (304)
T PRK07340 126 RDLLLIGTGVQAAHHLEALAA-------L--LPVRRVWVRGRTAASAAAFCAAARALGPTLEPLDGDAIPPA--VDVVVT 194 (304)
T ss_pred CEEEEECCHHHHHHHHHHHHH-------H--CCCCEEEEECCCHHHHHHHHHHHHCCCCCEEECCHHHHHHH--CCEEEE
T ss_conf 517997347999999999998-------5--99748999879989999999998600991797689999842--898999
Q ss_pred CCCCCCCCHHHHHHHHHHCCEEEE
Q ss_conf 648888511357888863270288
Q gi|254780900|r 80 LIGGEDYPAYDAVRIALMRGCHVV 103 (438)
Q Consensus 80 liGg~~~pA~~~i~~AL~~GkhVV 103 (438)
+|...+ |-. ..+++.|.||.
T Consensus 195 aT~S~~-Pv~---~~~~~~g~hI~ 214 (304)
T PRK07340 195 VTTSRT-PVY---PEAARAGRLVV 214 (304)
T ss_pred ECCCCC-CCC---CCCCCCCEEEE
T ss_conf 418997-644---65579981894
No 280
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=89.12 E-value=1.4 Score=24.01 Aligned_cols=15 Identities=27% Similarity=-0.022 Sum_probs=8.6
Q ss_pred HHHHHHHHHCCCCCC
Q ss_conf 899887876176156
Q gi|254780900|r 179 QDCLEEARRQGYAEG 193 (438)
Q Consensus 179 ~~al~~Aq~lGyaE~ 193 (438)
++-|+.|+++|....
T Consensus 155 ~~rl~~a~~~Ga~~~ 169 (280)
T TIGR03366 155 PDRRELALSFGATAL 169 (280)
T ss_pred HHHHHHHHHCCCCEE
T ss_conf 899999997399898
No 281
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=89.03 E-value=0.51 Score=27.17 Aligned_cols=49 Identities=16% Similarity=0.301 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHH
Q ss_conf 888748999999886699578888226778776135999921048899999999862
Q gi|254780900|r 362 NFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFN 418 (438)
Q Consensus 362 DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~ 418 (438)
..||++++|-+.|++++|+++-+.|-.. +... |..+.+.+.+.+++.|.
T Consensus 12 ~~~~~~~~if~~L~~~~i~v~~I~q~~s---~~~i-----sf~v~~~~~~~a~~~L~ 60 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQSES---EVNI-----SFTVDESDLEKAVKALH 60 (60)
T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHCCCC---CCEE-----EEEEEHHHHHHHHHHHC
T ss_conf 8837999999999984999889402677---4339-----99984899999999749
No 282
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.96 E-value=1.8 Score=23.33 Aligned_cols=123 Identities=20% Similarity=0.254 Sum_probs=61.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC---CCCCCHHC-CCHHHHHCCCCCCEEEEC
Q ss_conf 69999825667899999999989999997399659999982685200278---87710220-788898448899899986
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGI---DCLRYEWF-DDPLIMAGEADIDVFVEL 80 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~---~~~~~~~~-~d~~~li~~~~IDvVVEl 80 (438)
-||+++|+|.-|.+.++.|.++ |... ++.+.+ +....+.. ......+. +...+.+ .+.|.||--
T Consensus 9 kkv~V~GlG~sG~aaa~~L~~~--------g~~~-~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~d~vv~S 76 (468)
T PRK04690 9 KRVALWGWGREGRAAYRALRAQ--------LPAQ-PLTVFC-NAEEVREVGALADAALLVETEASAQRL--AAFEVVVKS 76 (468)
T ss_pred CEEEEEEECHHHHHHHHHHHHC--------CCEE-EEEECC-CCCCCHHHHHHCCCCCEEECCCCHHHH--HCCCEEEEC
T ss_conf 9799983478799999999966--------9904-999728-832464667620457567467785576--148899989
Q ss_pred CCCCCCCHHHHHHHHHHCCEEEEEECHHH---------------HH---HHH-----HHHHHHHHHCCCEEEEECCCCC-
Q ss_conf 48888511357888863270288504177---------------88---768-----9999875313966996056453-
Q gi|254780900|r 81 IGGEDYPAYDAVRIALMRGCHVVTANKAL---------------IA---SHG-----KDLALLAQKNNAILNFEAAVAG- 136 (438)
Q Consensus 81 iGg~~~pA~~~i~~AL~~GkhVVTANKal---------------lA---~~g-----~eL~~lA~~~gv~l~~easV~g- 136 (438)
.|+. |...++.+|.++|..|++- -++ ++ .+| .-|..+.++.|. .+.+||
T Consensus 77 -PGi~-~~~p~~~~a~~~~i~i~~e-iel~~~~~~~~~~~~~k~IaVTGTNGKTTTt~ll~~iL~~~g~----~~~~~GN 149 (468)
T PRK04690 77 -PGIS-PYRPEALAAAAQGTPFIGG-TALWFAEHAQPDGSVPGAVCVTGTKGKSTTTALLAHLLRAAGH----RTALVGN 149 (468)
T ss_pred -CCCC-CCCHHHHHHHHCCCCEEEH-HHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCC----CEEEECC
T ss_conf -9579-8689999999879948868-9999987531125678789996998589999999999985799----8289867
Q ss_pred -HHHHHHHHHH
Q ss_conf -0131899987
Q gi|254780900|r 137 -GIPIIRILKN 146 (438)
Q Consensus 137 -giPii~~l~~ 146 (438)
|.|+++.+.+
T Consensus 150 IG~P~~~~~~~ 160 (468)
T PRK04690 150 IGQPLLEVLAP 160 (468)
T ss_pred CCHHHHHHHCC
T ss_conf 76446765324
No 283
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.92 E-value=1.9 Score=23.10 Aligned_cols=84 Identities=17% Similarity=0.068 Sum_probs=45.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC--CCCCCCCCHH-C-CCHHHHHCCCCCCEEEEC
Q ss_conf 69999825667899999999989999997399659999982685200--2788771022-0-788898448899899986
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNID--RGIDCLRYEW-F-DDPLIMAGEADIDVFVEL 80 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~--~~~~~~~~~~-~-~d~~~li~~~~IDvVVEl 80 (438)
-||.++|+|.-|.++++.|.++ |.++ .+.|.+.... +.... ...+ . ....+.+ .+.|+||=-
T Consensus 7 k~v~V~GlG~sG~s~~~~L~~~--------G~~v---~~~D~~~~~~~~~~l~~-~~~~~~g~~~~~~~--~~~d~vV~S 72 (438)
T PRK03806 7 KNVVIIGLGLTGLSCVDFFLAR--------GVTP---RVMDTRMTPPGLDKLPE-NVERHTGSLNDEWL--LAADLIVAS 72 (438)
T ss_pred CEEEEEEECHHHHHHHHHHHHC--------CCEE---EEEECCCCCHHHHHHHC-CCCEEECCCCHHHH--CCCCEEEEC
T ss_conf 9899994578889999999978--------9969---99989999005788645-88466577796680--679999989
Q ss_pred CCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 488885113578888632702885
Q gi|254780900|r 81 IGGEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 81 iGg~~~pA~~~i~~AL~~GkhVVT 104 (438)
.|+. |....+.+|.++|+.|++
T Consensus 73 -PGI~-~~~p~~~~a~~~~i~i~s 94 (438)
T PRK03806 73 -PGIA-LAHPSLSAAADAGVEIVG 94 (438)
T ss_pred -CCCC-CCCHHHHHHHHCCCCEEE
T ss_conf -9789-989899999987994776
No 284
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.87 E-value=1.6 Score=23.72 Aligned_cols=85 Identities=16% Similarity=0.125 Sum_probs=46.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC-----CCCCCCCCHH--CCCHHHHHCCCCCCEE
Q ss_conf 69999825667899999999989999997399659999982685200-----2788771022--0788898448899899
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNID-----RGIDCLRYEW--FDDPLIMAGEADIDVF 77 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~-----~~~~~~~~~~--~~d~~~li~~~~IDvV 77 (438)
=||+++|+|.-|.++++.|.++ |.+ +. +.|.+.... +.+...+..+ -.++.+-+ +++|+|
T Consensus 15 kkv~i~GlG~sG~a~a~~L~~~--------g~~--v~-~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~--~~~d~v 81 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKL--------GAK--VT-AFDKKSEEELGEISLELKEKGVNLELGENYLDKL--TGFDVI 81 (458)
T ss_pred CEEEEEEECHHHHHHHHHHHHC--------CCE--EE-EEECCCCHHHHHHHHHHHHCCCEEEECCCHHHHC--CCCCEE
T ss_conf 9699997878899999999978--------897--99-9989884314899999985799899578405423--788889
Q ss_pred EECCCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 986488885113578888632702885
Q gi|254780900|r 78 VELIGGEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 78 VEliGg~~~pA~~~i~~AL~~GkhVVT 104 (438)
|=- .|+. +....+.+|.++|+.|++
T Consensus 82 v~S-PgI~-~~~p~~~~a~~~gi~v~~ 106 (458)
T PRK01710 82 FKT-PSMR-IDSPELVKAKEEGAYITS 106 (458)
T ss_pred EEC-CCCC-CCCHHHHHHHHCCCCEEC
T ss_conf 989-9879-989999999987993740
No 285
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=88.86 E-value=1.3 Score=24.34 Aligned_cols=26 Identities=23% Similarity=0.219 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 877889988787617615653223211
Q gi|254780900|r 175 GLSFQDCLEEARRQGYAEGDATFDING 201 (438)
Q Consensus 175 g~~f~~al~~Aq~lGyaE~DP~~Di~G 201 (438)
+.+++.|..-|+++| +|+.|-.++..
T Consensus 209 NRT~erA~~La~~~~-~~~~~l~el~~ 234 (414)
T COG0373 209 NRTLERAEELAKKLG-AEAVALEELLE 234 (414)
T ss_pred CCCHHHHHHHHHHHC-CEEECHHHHHH
T ss_conf 587899999999838-70221877887
No 286
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.71 E-value=1.7 Score=23.42 Aligned_cols=52 Identities=13% Similarity=0.254 Sum_probs=38.7
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 248887489999998866995788882267787761359999210488999999998623
Q gi|254780900|r 360 IRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNG 419 (438)
Q Consensus 360 v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~ 419 (438)
....||+-+++-+.|++.+|||.-+.|-.. +-...+ -+.+++.+.|++.|..
T Consensus 11 M~~~~GvaariF~~L~~~~INI~mIsQgsS---E~~Is~-----~V~~~d~~~Av~alh~ 62 (66)
T cd04916 11 MKNTVGVSARATAALAKAGINIRMINQGSS---EISIMI-----GVHNEDADKAVKAIYE 62 (66)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECCCC---CCEEEE-----EECHHHHHHHHHHHHH
T ss_conf 167935899999999987998899862776---115999-----9818999999999999
No 287
>pfam10727 Rossmann-like Rossmann-like domain. This family of proteins contain a Rossmann-like domain.
Probab=88.54 E-value=1.6 Score=23.76 Aligned_cols=101 Identities=24% Similarity=0.240 Sum_probs=56.0
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC-CCCCCCCCCHHCCCHHHHHCCCCCCEEEECCCCCCC
Q ss_conf 9982566789999999998999999739965999998268520-027887710220788898448899899986488885
Q gi|254780900|r 8 GVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI-DRGIDCLRYEWFDDPLIMAGEADIDVFVELIGGEDY 86 (438)
Q Consensus 8 giiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k-~~~~~~~~~~~~~d~~~li~~~~IDvVVEliGg~~~ 86 (438)
|++|.|.||..+...|.+ .| ..+.++..|+... .+.-...... ..++.+++.+ .|+|+=.+ .|.
T Consensus 1 GiIGaGrvG~~L~~al~~--------aG--h~v~gv~srs~~s~~~a~~~~~~~-~~~~~ev~~~--adlv~itv--PDd 65 (111)
T pfam10727 1 GIISAGRVGVALGEALER--------AG--HVVHAISAISDASRERAERRLDSP-VLPIPDVIRR--AELVVLAV--PDA 65 (111)
T ss_pred CCCCCCHHHHHHHHHHHH--------CC--CEEEEEEECCHHHHHHHHHHCCCC-CCCHHHHHHH--CCEEEEEC--CHH
T ss_conf 943765779999999997--------89--828999838988999999866997-6795898976--79999989--788
Q ss_pred CHHHHHH---HHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 1135788---8863270288504177887689999875313966
Q gi|254780900|r 87 PAYDAVR---IALMRGCHVVTANKALIASHGKDLALLAQKNNAI 127 (438)
Q Consensus 87 pA~~~i~---~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~ 127 (438)
.-.+++. .....|+-|+-..- .++-++++-+++.|..
T Consensus 66 ~I~~vv~~la~~~~~GqiV~HtSG----a~g~~vL~pa~~~GA~ 105 (111)
T pfam10727 66 ELPGLVEGLAATVRRGQIVAHTSG----AHGIGILAPLETSGAI 105 (111)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCC----CCHHHHHCHHHHCCCE
T ss_conf 899999999832679979998668----7507761449878986
No 288
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=88.43 E-value=1.8 Score=23.31 Aligned_cols=126 Identities=25% Similarity=0.246 Sum_probs=65.5
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC----CCCCCCCHHCCCHHHHHCCCCCCEEEE
Q ss_conf 2699998256678999999999899999973996599999826852002----788771022078889844889989998
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDR----GIDCLRYEWFDDPLIMAGEADIDVFVE 79 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~----~~~~~~~~~~~d~~~li~~~~IDvVVE 79 (438)
..||.++|+|.-|.+.++.|.+. |. ++ .+.|.+..... ........+...........+.|+||-
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~--------G~--~v-~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~ 75 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL--------GA--EV-TVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVK 75 (448)
T ss_pred CCEEEEEECCCCCHHHHHHHHHC--------CC--EE-EEECCCCCCCCHHHHHHHCCCCEEECCCCCHHCCCCCCEEEE
T ss_conf 99799992665109999999977--------98--69-998389876532344442037223137641100134778998
Q ss_pred CCCCCCCCHHHHHHHHHHCCEEEEEEC--------HH-HHH---HHH-----HHHHHHHHHCCCEEEEECCCCC--HHHH
Q ss_conf 648888511357888863270288504--------17-788---768-----9999875313966996056453--0131
Q gi|254780900|r 80 LIGGEDYPAYDAVRIALMRGCHVVTAN--------KA-LIA---SHG-----KDLALLAQKNNAILNFEAAVAG--GIPI 140 (438)
Q Consensus 80 liGg~~~pA~~~i~~AL~~GkhVVTAN--------Ka-llA---~~g-----~eL~~lA~~~gv~l~~easV~g--giPi 140 (438)
- .|.. |...++.+|.++|..|++=- ++ .+| ..| .-+..+.++.|. .+-+|| |.|+
T Consensus 76 S-PGi~-~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~----~~~lgGNIG~p~ 149 (448)
T COG0771 76 S-PGIP-PTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGL----DALLGGNIGTPA 149 (448)
T ss_pred C-CCCC-CCCHHHHHHHHCCCCEEEHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCC----CCEECCCCCCCH
T ss_conf 9-9999-988899999986993774888898744899989997999628899999999985599----832135167137
Q ss_pred HHHHHH
Q ss_conf 899987
Q gi|254780900|r 141 IRILKN 146 (438)
Q Consensus 141 i~~l~~ 146 (438)
...+.+
T Consensus 150 l~~~~~ 155 (448)
T COG0771 150 LELLEQ 155 (448)
T ss_pred HHHHCC
T ss_conf 876201
No 289
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=88.20 E-value=0.55 Score=26.93 Aligned_cols=87 Identities=26% Similarity=0.316 Sum_probs=45.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC----CCCCCC------CCCCC---------------
Q ss_conf 69999825667899999999989999997399659999982685----200278------87710---------------
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDK----NIDRGI------DCLRY--------------- 59 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~----~k~~~~------~~~~~--------------- 59 (438)
=+|.|+|+|..|+.++..|. +.|+. -..++|.|. +..|.+ ..++.
T Consensus 28 s~VlivG~GGLG~~~a~~La--------~aGVG--~i~lvD~D~Ve~SNL~RQ~~~~~diG~~Ka~~a~~~l~~iNp~v~ 97 (209)
T PRK08644 28 AKVGIAGAGGLGSNIAVALA--------RSGVG--NLKLVDFDVVEPSNLNRQQYFISQIGMFKVEALKENLLRINPFVK 97 (209)
T ss_pred CCEEEECCCHHHHHHHHHHH--------HHCCC--EEEEEECCEECCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCEE
T ss_conf 96899888788999999999--------93898--189988999015411037567877597569999999874489828
Q ss_pred ------HH-CCCHHHHHCCCCCCEEEECCCCCCCCH-H-HHHHHHHH-CCEEEEEEC
Q ss_conf ------22-078889844889989998648888511-3-57888863-270288504
Q gi|254780900|r 60 ------EW-FDDPLIMAGEADIDVFVELIGGEDYPA-Y-DAVRIALM-RGCHVVTAN 106 (438)
Q Consensus 60 ------~~-~~d~~~li~~~~IDvVVEliGg~~~pA-~-~~i~~AL~-~GkhVVTAN 106 (438)
.+ .++..+++ ++.|+|++++ |... + -+...+.+ .++.+|++-
T Consensus 98 I~~~~~~l~~~n~~~l~--~~~DiViDct---DN~~tR~li~~~c~~~~~~plV~as 149 (209)
T PRK08644 98 IEVHQVKIDEDNIEELF--KDCDIVVEAF---DNAETKAMLVETVLEKKGKKVVSAS 149 (209)
T ss_pred EEEEECCCCHHHHHHHH--HCCCEEEECC---CCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99972248989999998--5799999999---9999999999999997799689996
No 290
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.17 E-value=1.7 Score=23.55 Aligned_cols=61 Identities=11% Similarity=0.258 Sum_probs=40.2
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEE--EECCHHHHHHHHH
Q ss_conf 2799992488874899999988669957888822677877613599992--1048899999999
Q gi|254780900|r 354 YFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMIT--HKVSGKLIRDAIE 415 (438)
Q Consensus 354 yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiT--h~~~e~~i~~ai~ 415 (438)
|=+-|+..|||..||++|.+|++-|.+|.--.-... .++-...|++++ +.-....++.+++
T Consensus 2 hEitfst~dkPklLsqls~lL~d~GLNI~EAH~fsT-~DGysLdVFVV~GW~~ee~~~l~~al~ 64 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFST-DDGLALDIFVVTGWKRGETAALGHALQ 64 (68)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHEEEC-CCCCEEEEEEECCCCHHHHHHHHHHHH
T ss_conf 069986178515899999999981734423422643-787278899981888253899999999
No 291
>KOG0022 consensus
Probab=88.07 E-value=1.1 Score=24.92 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=20.9
Q ss_pred EEEEECCHHHHHHHHHHHHCCCCCC
Q ss_conf 9921048899999999862383000
Q gi|254780900|r 400 MITHKVSGKLIRDAIECFNGKSDAI 424 (438)
Q Consensus 400 iiTh~~~e~~i~~ai~~i~~l~~v~ 424 (438)
+|||+-+=++|++|-+.|.+=+.+.
T Consensus 346 ~ITh~l~f~~In~AF~ll~~Gk~iR 370 (375)
T KOG0022 346 FITHELPFEEINKAFDLLHEGKSIR 370 (375)
T ss_pred HHHCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 5334667899899999985796679
No 292
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=88.00 E-value=1.6 Score=23.62 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=16.4
Q ss_pred EEEEEC-CCHHHHHHHHHHHHH
Q ss_conf 999982-566789999999998
Q gi|254780900|r 6 KVGVAG-LGTVGSALIRSIQKR 26 (438)
Q Consensus 6 kIgiiG-~G~VG~~~~~~l~~~ 26 (438)
||-|.| .|.+|+.+++.|.++
T Consensus 3 kILVTGgaGFIGs~Lv~~Ll~~ 24 (347)
T PRK11908 3 KVLILGVNGFIGHHLTKRILET 24 (347)
T ss_pred EEEEECCCCHHHHHHHHHHHHH
T ss_conf 8999757438999999999982
No 293
>PRK08328 hypothetical protein; Provisional
Probab=87.92 E-value=2.3 Score=22.62 Aligned_cols=20 Identities=35% Similarity=0.569 Sum_probs=17.1
Q ss_pred EEEEEECCCHHHHHHHHHHH
Q ss_conf 69999825667899999999
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQ 24 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~ 24 (438)
=+|.++|+|.+|+.++..|.
T Consensus 28 s~VlvvG~GGlGs~~~~~La 47 (230)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLA 47 (230)
T ss_pred CCEEEECCCHHHHHHHHHHH
T ss_conf 97899887878999999999
No 294
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.77 E-value=1 Score=25.04 Aligned_cols=57 Identities=14% Similarity=0.191 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEE----CCHHHHHHHHHHHHCCCCCC
Q ss_conf 48887489999998866995788882267787761359999210----48899999999862383000
Q gi|254780900|r 361 RNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHK----VSGKLIRDAIECFNGKSDAI 424 (438)
Q Consensus 361 ~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~----~~e~~i~~ai~~i~~l~~v~ 424 (438)
-..+|-|+++=.+|++|+||++-+.-- .+.|-++.++ .....++.++++|+++..|.
T Consensus 12 l~a~GFLa~VF~if~~h~iSVDlitTS-------EvsVslTlD~~~~~~~~~~l~~Ll~eL~~~c~V~ 72 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVSTS-------ETNVTVSLDPDPNGLDPDVLDALLDDLNQICRVK 72 (75)
T ss_pred HHHCCHHHHHHHHHHHCCCCEEEEEEE-------EEEEEEEECCCCCCCCHHHHHHHHHHHHHHCEEE
T ss_conf 656264999999999849717899701-------5799999758876546689999999998527079
No 295
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=87.59 E-value=2.4 Score=22.49 Aligned_cols=70 Identities=19% Similarity=0.265 Sum_probs=50.4
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 532799992488874899999988669957888822677877613599992104889999999986238300047
Q gi|254780900|r 352 KEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRY 426 (438)
Q Consensus 352 ~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~ 426 (438)
..+|+++++. |+-+..+...|.++++.|.++..++.+ ++...++.+..++ ..++++.+..|++++.|+..
T Consensus 143 ~~~~~~i~~~--~~~~~~i~~~l~~~~i~i~~v~i~~~~-~~~~v~l~v~~~~--~~~~~dl~~~L~~i~gV~~V 212 (215)
T PRK09977 143 KNYHLQLTLV--NGNTVSMLDWFKQQKIKTDLVSLQENE-DHEVVTIDITLHA--TTSIEDLLRLLKGMAGVKGV 212 (215)
T ss_pred CCEEEEEEEE--CCCHHHHHHHHHHCCCEEEEEEEEECC-CCCEEEEEEEECC--CCCHHHHHHHHHCCCCCEEE
T ss_conf 6516999993--582779999999849758999989828-8858999999779--87499999998559993588
No 296
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating); InterPro: IPR004849 This family resembles a larger family of bacterial and eukaryotic 6-phosphogluconate dehydrogenases (Gnd) but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain Gnd, and in Aquifex aeolicus. .
Probab=87.55 E-value=2.4 Score=22.47 Aligned_cols=22 Identities=32% Similarity=0.813 Sum_probs=19.0
Q ss_pred EE-EEEECCCHHHHHHHHHHHHH
Q ss_conf 69-99982566789999999998
Q gi|254780900|r 5 LK-VGVAGLGTVGSALIRSIQKR 26 (438)
Q Consensus 5 ik-IgiiG~G~VG~~~~~~l~~~ 26 (438)
|| ++|||+|.+|..++++|.+.
T Consensus 1 MktlglIGLGrMG~ni~~rl~~r 23 (341)
T TIGR00872 1 MKTLGLIGLGRMGANIAKRLADR 23 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC
T ss_conf 95244313346789999998527
No 297
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=87.52 E-value=2.4 Score=22.46 Aligned_cols=86 Identities=24% Similarity=0.237 Sum_probs=45.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC----CCCCCC----CCCCC------------------
Q ss_conf 9999825667899999999989999997399659999982685----200278----87710------------------
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDK----NIDRGI----DCLRY------------------ 59 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~----~k~~~~----~~~~~------------------ 59 (438)
||.|+|+|..|+..+..|. +.|+. -..+.|.|. +..|.+ +..+.
T Consensus 1 kV~IvG~GGLG~~~a~~La--------~aGvg--~i~lvD~D~Ve~SNL~RQ~~~~~diG~~Ka~~a~~~l~~iNp~i~i 70 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLA--------RSGVG--NLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKI 70 (174)
T ss_pred CEEEECCCHHHHHHHHHHH--------HHCCC--EEEEEECCCCCCCCHHCCHHHHHHCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 9899876788999999999--------81897--3999989946664430132477747974999999999987979889
Q ss_pred -----HHC-CCHHHHHCCCCCCEEEECCCCCCCC-HHHHH-HHHHH-CCEEEEEEC
Q ss_conf -----220-7888984488998999864888851-13578-88863-270288504
Q gi|254780900|r 60 -----EWF-DDPLIMAGEADIDVFVELIGGEDYP-AYDAV-RIALM-RGCHVVTAN 106 (438)
Q Consensus 60 -----~~~-~d~~~li~~~~IDvVVEliGg~~~p-A~~~i-~~AL~-~GkhVVTAN 106 (438)
.++ ++..++++ +.|+|++++ |.. ++.++ ..+.. .+|.+|++.
T Consensus 71 ~~~~~~l~~~n~~~l~~--~~D~ViD~~---Dn~~tr~~l~~~~~~~~~~plv~as 121 (174)
T cd01487 71 EAINIKIDENNLEGLFG--DCDIVVEAF---DNAETKAMLAESLLGNKNKPVVCAS 121 (174)
T ss_pred EEEECCCCHHHHHHHHH--CCCEEEECC---CCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99914449999999983--799999999---9989999999999998799599997
No 298
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=87.41 E-value=0.83 Score=25.68 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=42.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC--CCC----CHHCCCHHHHHCCCCCCEEE
Q ss_conf 699998256678999999999899999973996599999826852002788--771----02207888984488998999
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGID--CLR----YEWFDDPLIMAGEADIDVFV 78 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~--~~~----~~~~~d~~~li~~~~IDvVV 78 (438)
-|+.++|.|.+|+.+++.|.++ | +.-..++.|+.++.+.+. .+. ..-+++..+.+ .+.|+||
T Consensus 13 ~~vlVIGaG~~~~~~~~~L~~~--------g--~~~i~v~nRt~~ka~~la~~~~~~~~~~~~~~~l~~~l--~~~DivI 80 (134)
T pfam01488 13 KKVLLIGAGEMARLAAKHLLSK--------G--AKKITIANRTLEKAKELAEEFGGEEVEALPLDELEELL--AEADIVI 80 (134)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--------C--CCEEEEECCCHHHHHHHHHHCCCCCEEEEECHHHHHHH--HHCCEEE
T ss_conf 9899999609999999999975--------9--98899954757899999998499725898513544136--3199999
Q ss_pred ECCCCC
Q ss_conf 864888
Q gi|254780900|r 79 ELIGGE 84 (438)
Q Consensus 79 EliGg~ 84 (438)
-+++..
T Consensus 81 ~aT~s~ 86 (134)
T pfam01488 81 SATSAP 86 (134)
T ss_pred EECCCC
T ss_conf 925999
No 299
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=87.35 E-value=0.68 Score=26.30 Aligned_cols=71 Identities=10% Similarity=0.107 Sum_probs=57.2
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 32799992488874899999988669957888822677877613599992104889999999986238300047
Q gi|254780900|r 353 EYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRY 426 (438)
Q Consensus 353 ~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~ 426 (438)
+|.|-+.+.++|++|..|..+.-.-|..|.++.-... .+++.+.|-++ ..++.-++-..++|++|-.|...
T Consensus 3 ~h~L~i~a~~rPevLERiLRVvRHRGF~v~~m~m~~~-~~~~~~~i~lt--V~SdR~i~lL~~QL~KL~DV~~v 73 (76)
T PRK11152 3 QHQLTIKARFRPEVLERVLRVVRHRGFQVCQMNMTAN-SDAQNINIELT--VASERAIDLLSSQLNKLVDVAHV 73 (76)
T ss_pred EEEEEEEEECCCHHHEEEEEEEEECCEEEEEEEEEEC-CCCCEEEEEEE--EECCCHHHHHHHHHHHHCCEEEE
T ss_conf 1899999706977831263478416849999762673-89988999999--90577399999988742716899
No 300
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=87.12 E-value=1.8 Score=23.34 Aligned_cols=93 Identities=23% Similarity=0.350 Sum_probs=45.6
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC---CCCCCCC-CHHCCCHHHHHCCCCCCEEE
Q ss_conf 7269999825667899999999989999997399659999982685200---2788771-02207888984488998999
Q gi|254780900|r 3 GVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNID---RGIDCLR-YEWFDDPLIMAGEADIDVFV 78 (438)
Q Consensus 3 k~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~---~~~~~~~-~~~~~d~~~li~~~~IDvVV 78 (438)
...+|+|+|+|.+|+.+++-|.+. |... .|..++.+.. +...++- ...+++. ......+-|+||
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~--------g~~v---~i~g~d~~~~~~~~a~~lgv~d~~~~~~-~~~~~~~aDlVi 69 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEA--------GLVV---RIIGRDRSAATLKAALELGVIDELTVAG-LAEAAAEADLVI 69 (279)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--------CCEE---EEECCCCCHHHHHHHHHCCCCHHHCCCH-HHHHCCCCCEEE
T ss_conf 864899987746779999999976--------9847---9972477467787766358530100115-554135699899
Q ss_pred ECCCCCCCCH-HHHHHH---HHHCCEEE--EEECHHHH
Q ss_conf 8648888511-357888---86327028--85041778
Q gi|254780900|r 79 ELIGGEDYPA-YDAVRI---ALMRGCHV--VTANKALI 110 (438)
Q Consensus 79 EliGg~~~pA-~~~i~~---AL~~GkhV--VTANKall 110 (438)
=++ ...+ -+++++ .|+.|.-| ||.-|..+
T Consensus 70 vav---Pi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v 104 (279)
T COG0287 70 VAV---PIEATEEVLKELAPHLKKGAIVTDVGSVKSSV 104 (279)
T ss_pred EEC---CHHHHHHHHHHHCCCCCCCCEEECCCCHHHHH
T ss_conf 957---78899999998630379998897364201789
No 301
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=87.11 E-value=1.2 Score=24.54 Aligned_cols=102 Identities=18% Similarity=0.184 Sum_probs=43.3
Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 96056453013189998764128620343331420000000010068778899887876176156532232117899999
Q gi|254780900|r 129 NFEAAVAGGIPIIRILKNYVEYDEINRVYGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHKI 208 (438)
Q Consensus 129 ~~easV~ggiPii~~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl 208 (438)
+.+.-|-|=--|+.-+|+.+.-. -=.||++-+|+++++ ..|.-+=+--.+-++.+.-.| .++-.
T Consensus 102 GLdS~VlGE~qIlgQvK~A~~~A-------~~~g~~g~~L~~lfq--~A~~~aKrVRteT~I~~~~vS-------v~~~a 165 (311)
T cd05213 102 GLDSMVVGETQILGQVKNAYKLA-------KEAGTSGKLLNRLFQ--KAIKVGKRVRTETGISRGAVS-------ISSAA 165 (311)
T ss_pred CCCHHHCCCHHHHHHHHHHHHHH-------HHCCCCHHHHHHHHH--HHHHHHHHHHHHCCCCCCCCC-------HHHHH
T ss_conf 34001048478999999999999-------981981389999999--999999988761678889888-------99999
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCE
Q ss_conf 999999818855531000122320476740347871985
Q gi|254780900|r 209 AILSAIAFGIDTSVEGVYCEGISNITLEDIRGAADFGYC 247 (438)
Q Consensus 209 ~ILa~~~~g~~~~~~~v~~~gI~~i~~~di~~a~~~g~~ 247 (438)
.=++.-.||. +.-..+.+=|--++...-.++-.+.|..
T Consensus 166 v~~a~~~~~~-l~~~~vLviGaGem~~l~~~~L~~~g~~ 203 (311)
T cd05213 166 VELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAAKGVA 203 (311)
T ss_pred HHHHHHHHCC-CCCCEEEEECCCHHHHHHHHHHHHCCCC
T ss_conf 9999987187-2116799986879999999999965998
No 302
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.86 E-value=2.6 Score=22.21 Aligned_cols=98 Identities=21% Similarity=0.171 Sum_probs=47.9
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC--CC---------CCCHHCCCHHHHHCCC
Q ss_conf 269999825667899999999989999997399659999982685200278--87---------7102207888984488
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGI--DC---------LRYEWFDDPLIMAGEA 72 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~--~~---------~~~~~~~d~~~li~~~ 72 (438)
.-||+|+|+|+||+.++-.|..+ +.-=++. ..|.+..+..+. ++ ......+|+.++ .
T Consensus 3 r~Kv~IIGaG~VG~~~A~~l~~~--------~l~~el~-L~Di~~~~a~g~a~Dl~h~~~~~~~~~v~~~~d~~~~---~ 70 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAK--------GLADELV-LVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT---A 70 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--------CCCCEEE-EEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCHHHH---C
T ss_conf 88699989788899999999966--------9988799-9938898332688886604012798559937999996---8
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHH
Q ss_conf 9989998648888511357888863270288504177887689999875
Q gi|254780900|r 73 DIDVFVELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLA 121 (438)
Q Consensus 73 ~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA 121 (438)
+.|+||=.-|-...|.- .+. .....|-..+...++.+.+.+
T Consensus 71 ~aDvVVitAG~~~k~g~--~R~------dLl~~N~~I~~~i~~~i~~~~ 111 (312)
T cd05293 71 NSKVVIVTAGARQNEGE--SRL------DLVQRNVDIFKGIIPKLVKYS 111 (312)
T ss_pred CCCEEEECCCCCCCCCC--CHH------HHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999988999999898--889------999988999999999988419
No 303
>PRK06291 aspartate kinase; Provisional
Probab=86.74 E-value=2.6 Score=22.17 Aligned_cols=246 Identities=13% Similarity=0.146 Sum_probs=103.8
Q ss_pred HHCCCCEEEEEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH-----HHHHHHHCCCCCC
Q ss_conf 41286203433314200000000100687788998878761761565322321178999999-----9999981885553
Q gi|254780900|r 148 VEYDEINRVYGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHKIA-----ILSAIAFGIDTSV 222 (438)
Q Consensus 148 l~~~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl~-----ILa~~~~g~~~~~ 222 (438)
+..+.|-=+.|-.-.|.+-..+.+-.+|.+|+.++- |..++=-|-.=--||+|+-+|.-=. .|.++.|.. .
T Consensus 185 ~~~~~v~vv~GFig~~~~G~~ttLGRGGSD~TAa~l-A~~l~A~~~~IwTDV~Gi~taDPriV~~A~~i~~lsy~E---A 260 (466)
T PRK06291 185 LKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAII-GAALDADEIWIWTDVDGVMTADPRIVPEARTIPKISYIE---A 260 (466)
T ss_pred HCCCCEEEECCCCEECCCCCEEEECCCCHHHHHHHH-HHHCCCCEEEEEECCCCEEECCCCCCCCCEECCCCCHHH---H
T ss_conf 404836897361048899977870799618999999-995788699994056734716998787775437459999---9
Q ss_pred CCCHHHHHHHCCHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEEEECC
Q ss_conf 10001223204767403478719858741013313678356999986416773000366541689831131005897268
Q gi|254780900|r 223 EGVYCEGISNITLEDIRGAADFGYCIKFLAMARRKGKGIIRYVYPVLLKYDSVMALVDGITNAVVIETNGLGKLTMTGPG 302 (438)
Q Consensus 223 ~~v~~~gI~~i~~~di~~a~~~g~~ikli~~~~~~~~~i~~~V~P~li~~~~~la~v~g~~Nai~i~~~~~g~~~~~G~G 302 (438)
.+...-|-.-+.|.-++.+.+.|-.++....-.....|- .+.+.--+.+++.-.+.+..|... +.+.|.|
T Consensus 261 ~ELa~~GakVlHp~ti~p~~~~~IPi~I~nt~~P~~~GT--~I~~~~~~~~~~Vk~Ia~~~~i~~--------i~i~~~~ 330 (466)
T PRK06291 261 MELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNPEFPGT--LITSESEQSNGVVKAVTLIKNVAL--------INISGAG 330 (466)
T ss_pred HHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCE--EEECCCCCCCCCEEEEECCCCEEE--------EEEECCC
T ss_conf 999975876456778999998099389982689899972--896477667552210103577379--------9971576
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCC---------CCCCCCCCCCCCCCCHH-HCCCCEEEE---------EE----
Q ss_conf 76661020688999999741777765566---------66783100234438853-446532799---------99----
Q gi|254780900|r 303 AGGSATASAVLGDICSIAKTNTQKSVSWA---------LGKESSSFSVIHCDGVY-EEEKEYFIR---------LT---- 359 (438)
Q Consensus 303 AG~~~TAsaV~sDli~i~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~yYLR---------l~---- 359 (438)
= +-..++.+.+.++.........-.. +.......+.. ..... +.......+ ++
T Consensus 331 m---~~~~g~~~~if~~l~~~~i~v~~i~q~ss~~~is~~v~~~~~~~~-~~~l~~~~~~~~~~~v~~~~~~a~vsvVG~ 406 (466)
T PRK06291 331 M---VGVPGVAARIFSALAREGVNVIMISQGSSESNISLVIDEADVEKA-LKALRREFNRGIVRDITFDKDVCVVAVVGA 406 (466)
T ss_pred C---CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEECHHHHHHH-HHHHHHHHHHCCCCCEEECCCEEEEEEECC
T ss_conf 5---530006899989998739808999804887605899618889999-999999876436672797389589999896
Q ss_pred -ECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHC
Q ss_conf -248887489999998866995788882267787761359999210488999999998623
Q gi|254780900|r 360 -IRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNG 419 (438)
Q Consensus 360 -v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~ 419 (438)
..+.||+.+++-+.|++++|+|.-+.|-. ++-...+|+ .+++.+.+++.|-+
T Consensus 407 gm~~~~gv~~~~f~aL~~~~InI~~Isqgs---Se~nIs~vV-----~~~d~~~Av~~LH~ 459 (466)
T PRK06291 407 GMAGTPGVAGRLFGALGESGINIKMISQGS---SEVNISFVV-----KEEDGERAVKVLHD 459 (466)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCC---CCCEEEEEE-----EHHHHHHHHHHHHH
T ss_conf 613482199999999986899889974588---877799998-----08999999999999
No 304
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=86.70 E-value=2.6 Score=22.15 Aligned_cols=210 Identities=14% Similarity=0.144 Sum_probs=92.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC-----CCCCCC--------CCCHHCCCHHHHHCC
Q ss_conf 6999982566789999999998999999739965999998268520-----027887--------710220788898448
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI-----DRGIDC--------LRYEWFDDPLIMAGE 71 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k-----~~~~~~--------~~~~~~~d~~~li~~ 71 (438)
|||+|+|+|.||+-++-.|.+ .|.++.+ .+|.... ..++.+ .....++++.++
T Consensus 1 MkI~IiGaGaiG~~~a~~L~~--------ag~~V~l---i~r~~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~--- 66 (307)
T PRK06522 1 MKIAILGAGAIGGLFGARLAQ--------AGHDVTL---VARGATLAEALNENGLRLLEGGEVFVVPVPAADDPAEL--- 66 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHH--------CCCCEEE---EECCHHHHHHHHHCCEEEECCCCEEECCCCCCCCHHHC---
T ss_conf 989999914999999999984--------8998899---97888899999968939952897698055034886674---
Q ss_pred CCCCEEEECCCCCCC-CHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHC
Q ss_conf 899899986488885-1135788886327028850417788768999987531396699605645301318999876412
Q gi|254780900|r 72 ADIDVFVELIGGEDY-PAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILKNYVEY 150 (438)
Q Consensus 72 ~~IDvVVEliGg~~~-pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~~~l~~ 150 (438)
...|+++=++=..+. .+.+.++..+..+..||+.-.++ .+.+.|.+.--.+.+. .--+..++..+ ..
T Consensus 67 ~~~D~iiv~vKs~~~~~a~~~l~~~l~~~t~iv~lqNG~--g~~~~l~~~~~~~~v~-~gv~~~~a~~~---------~p 134 (307)
T PRK06522 67 GPQDLVILAVKAYQLPAALPDLAPLLGPETVVLFLQNGV--GHEEVLAAYIGPERVL-GGVVTHAAELE---------GP 134 (307)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCC--CHHHHHHHHCCCCCEE-EEEEEEEEEEC---------CC
T ss_conf 898889998066689999999986459994899961686--7799998653725399-99989989971---------88
Q ss_pred CCCEEEEEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH-----HHCCCCCCCCC
Q ss_conf 8620343331420000000010068778899887876176156532232117899999999999-----81885553100
Q gi|254780900|r 151 DEINRVYGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHKIAILSAI-----AFGIDTSVEGV 225 (438)
Q Consensus 151 ~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa~~-----~~g~~~~~~~v 225 (438)
.+|.. .|...+.+...........+.|.++-+..--+...+.|+.+. -..|+++-+.+ .++.+. .++
T Consensus 135 g~v~~-----~~~g~~~~G~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~-~W~Kl~~N~~~N~ltal~~~~~--g~l 206 (307)
T PRK06522 135 GVVRH-----TGGGRTTIGEPDGQSSDRVEALADLLNAAGLDVEWSPDIRQE-IWRKLWVNCVINPLTALLGCTN--GEL 206 (307)
T ss_pred EEEEE-----CCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECHHHHH-HHHHHHHHHHHHHHHHHHCCCH--HHH
T ss_conf 38998-----489718971589874679999999997289966981347999-9857998860427889719977--888
Q ss_pred H-----HHHHHHCCHHHHHHHHHCCCEE
Q ss_conf 0-----1223204767403478719858
Q gi|254780900|r 226 Y-----CEGISNITLEDIRGAADFGYCI 248 (438)
Q Consensus 226 ~-----~~gI~~i~~~di~~a~~~g~~i 248 (438)
. .+=++.+-.|-...|+..|+.+
T Consensus 207 ~~~~~~~~l~~~l~~E~~~va~a~G~~~ 234 (307)
T PRK06522 207 LADPDGRALIRALMEEVAAVAEAEGVHL 234 (307)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 6397799999999999999999869999
No 305
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.62 E-value=1.4 Score=24.08 Aligned_cols=84 Identities=20% Similarity=0.206 Sum_probs=43.2
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC--CCCCCC-CCHHCCCHHHHHCCCCCCEEEEC
Q ss_conf 269999825667899999999989999997399659999982685200--278877-10220788898448899899986
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNID--RGIDCL-RYEWFDDPLIMAGEADIDVFVEL 80 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~--~~~~~~-~~~~~~d~~~li~~~~IDvVVEl 80 (438)
.=||+++|+|.-|.++++.|.+. + . ++...+....++ ...... .....++.. -.++|.||=
T Consensus 6 ~K~v~V~GlG~sG~a~~~~L~~~--------~-~--~~~~dd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~d~iV~- 69 (450)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQNK--------Y-D--LIVYDDLKANRDIFEELFSKNAIIALSDSR----WQNLDKIVL- 69 (450)
T ss_pred CCEEEEEEECHHHHHHHHHHHHC--------C-C--EEEEECCCCCHHHHHHHHCCCCEECCCCCC----HHCCCEEEE-
T ss_conf 99089995878799999999719--------9-9--899989965647899752148360257111----521999998-
Q ss_pred CCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 488885113578888632702885
Q gi|254780900|r 81 IGGEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 81 iGg~~~pA~~~i~~AL~~GkhVVT 104 (438)
-.|+. +...++.+|.++|..|++
T Consensus 70 SPGI~-~~~p~~~~a~~~~i~i~~ 92 (450)
T PRK01368 70 SPGIP-LTHEIVKIAKNFNIPITS 92 (450)
T ss_pred CCCCC-CCCHHHHHHHHCCCCEEE
T ss_conf 99619-989999999987995876
No 306
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=86.49 E-value=0.69 Score=26.23 Aligned_cols=140 Identities=19% Similarity=0.220 Sum_probs=58.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEE---ECC
Q ss_conf 69999825667899999999989999997399659999982685200278877102207888984488998999---864
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFV---ELI 81 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVV---Eli 81 (438)
-.+||+|+|+||+.+++.+. -.|. ++. .+| +.+... ....-+.+.++++.. .|+|. -++
T Consensus 117 ktvGIIG~G~IG~~va~~l~--------afG~--~vl-~~D--P~~~~~---~~~~~~~sleell~~--sDiIslHvPLt 178 (379)
T PRK00257 117 RTYGIVGVGHVGGRLVRVLR--------GLGW--KVL-VCD--PPRQEA---EGDGDFVSLERILEE--CDIISLHTPLT 178 (379)
T ss_pred CEEEEECCCHHHHHHHHHHH--------HCCC--EEE-EEC--CHHHHH---HCCCCEECHHHHHHH--CCEEEEECCCC
T ss_conf 87999771679999999999--------7799--899-978--457664---338603349999874--99999925777
Q ss_pred CCCCCCHHHH----HHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH--HHHHH-HHCCCC-
Q ss_conf 8888511357----888863270288504177887689999875313966996056453013189--99876-412862-
Q gi|254780900|r 82 GGEDYPAYDA----VRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIR--ILKNY-VEYDEI- 153 (438)
Q Consensus 82 Gg~~~pA~~~----i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~--~l~~~-l~~~~i- 153 (438)
-.-..|.+.+ ...+++.|.-+|-+--+.+... ..|.+..++... ..+---|=-.=|-++ .+... ++.-.|
T Consensus 179 ~~g~~~T~~Li~~~~L~~mk~~aiLINtsRG~VVDe-~ALl~aL~~g~~-~~a~LDVwe~EP~i~~~Ll~~~~iaTPHIA 256 (379)
T PRK00257 179 KEGEHPTWHLLDEAFLASLRPGAWLINASRGAVVDN-QALREALLSGED-LDAVLDVWEGEPQIDLELADLCTIATPHIA 256 (379)
T ss_pred CCCCCCCCCCCCHHHHHHCCCCCEEEECCCCHHCCH-HHHHHHHHHCCC-CEEEEECCCCCCCCCHHHHHCCCEECCCCC
T ss_conf 788753204719999960799809998897300199-999999981996-368864356799989889845878678134
Q ss_pred -EEEEEEECCCH
Q ss_conf -03433314200
Q gi|254780900|r 154 -NRVYGIINGTC 164 (438)
Q Consensus 154 -~~i~GIlnGT~ 164 (438)
.+++|=++||.
T Consensus 257 GyS~egK~rgT~ 268 (379)
T PRK00257 257 GYSLDGKARGTA 268 (379)
T ss_pred CCCHHHHHHHHH
T ss_conf 567889987999
No 307
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=86.49 E-value=2.7 Score=22.08 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=37.5
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 248887489999998866995788882267787761359999210488999999998623
Q gi|254780900|r 360 IRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNG 419 (438)
Q Consensus 360 v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~ 419 (438)
....|||.+++-+.|++.+|+|..+.. ++-...+ -..++++++|++.|.+
T Consensus 11 M~~~pGVaa~~f~aL~~~~InI~~ist-----Sei~IS~-----vV~~~d~~~Av~alH~ 60 (64)
T cd04937 11 IRGVPGVMAKIVGALSKEGIEILQTAD-----SHTTISC-----LVSEDDVKEAVNALHE 60 (64)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEEC-----CCCEEEE-----EEEHHHHHHHHHHHHH
T ss_conf 778852999999999978995799971-----6828999-----9808899999999998
No 308
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=86.31 E-value=2.8 Score=22.02 Aligned_cols=106 Identities=23% Similarity=0.260 Sum_probs=53.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC--------------------CCCCCCHHCCC
Q ss_conf 6999982566789999999998999999739965999998268520027--------------------88771022078
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRG--------------------IDCLRYEWFDD 64 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~--------------------~~~~~~~~~~d 64 (438)
|||+++|.|-||.-++-.+.+. | .++.++ |.+..+-.. ....+..+++|
T Consensus 1 MkI~ViGlGyVGl~~a~~lA~~--------G--~~V~g~-D~d~~~i~~l~~g~~p~~E~gl~~ll~~~~~~~~l~~ttd 69 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL--------G--HEVTGV-DIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTD 69 (411)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--------C--CCEEEE-ECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEECC
T ss_conf 9799989787799999999948--------9--948999-8999999999779899789898999999986399799878
Q ss_pred HHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf 88984488998999864888851135788886327028850417788768999987531396699605645301
Q gi|254780900|r 65 PLIMAGEADIDVFVELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGI 138 (438)
Q Consensus 65 ~~~li~~~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggi 138 (438)
+.+.+.+. |+++=+.+ +|.. +.|. ++-..+-..-+++.+..+. +.-+-.|+||-=|.
T Consensus 70 ~~~~i~~~--dii~I~V~---TP~~-------~~g~----~d~s~l~~a~~~i~~~l~~-~~lvii~STV~pGT 126 (411)
T TIGR03026 70 YEDAIRDA--DVIIICVP---TPLK-------EDGS----PDLSYVESAAETIAKHLRK-GATVVLESTVPPGT 126 (411)
T ss_pred HHHHHHHC--CEEEEECC---CCCC-------CCCC----CHHHHHHHHHHHHHHHCCC-CCEEEEECCCCCCE
T ss_conf 89987209--99999768---9866-------6887----2138999999999976689-99899957868681
No 309
>PRK09414 glutamate dehydrogenase; Provisional
Probab=85.77 E-value=2.3 Score=22.53 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=6.7
Q ss_pred HCCCCCCCCCCCCCHH
Q ss_conf 6176156532232117
Q gi|254780900|r 187 RQGYAEGDATFDINGV 202 (438)
Q Consensus 187 ~lGyaE~DP~~Di~G~ 202 (438)
.+|..=.+-+.=|+|+
T Consensus 222 ~~g~~l~gk~v~IqGf 237 (446)
T PRK09414 222 ARGDSFEGKTVVVSGS 237 (446)
T ss_pred HCCCCCCCCEEEEECC
T ss_conf 7499957887999777
No 310
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=85.46 E-value=3 Score=21.73 Aligned_cols=87 Identities=22% Similarity=0.238 Sum_probs=46.7
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC-CC--CCCCHH---CCCHHHHHC--CCCCCE
Q ss_conf 6999982566789999999998999999739965999998268520027-88--771022---078889844--889989
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRG-ID--CLRYEW---FDDPLIMAG--EADIDV 76 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~-~~--~~~~~~---~~d~~~li~--~~~IDv 76 (438)
+++.|+|+|.||..+++.|.++ |. +++.| +++.++.+. .. .....+ -+|...|.+ -.+.|+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~--------g~--~Vv~I-d~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE--------GH--NVVLI-DRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--------CC--EEEEE-ECCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCCE
T ss_conf 9899989857889999999878--------99--08999-7688999986320004499992688989998679863899
Q ss_pred EEECCCCCCCCHHHHHHHHHH-C-CEEEE
Q ss_conf 998648888511357888863-2-70288
Q gi|254780900|r 77 FVELIGGEDYPAYDAVRIALM-R-GCHVV 103 (438)
Q Consensus 77 VVEliGg~~~pA~~~i~~AL~-~-GkhVV 103 (438)
+|-++|..+ ...-.+.-|++ . -+.|+
T Consensus 70 vva~t~~d~-~N~i~~~la~~~~gv~~vi 97 (225)
T COG0569 70 VVAATGNDE-VNSVLALLALKEFGVPRVI 97 (225)
T ss_pred EEEEECCCH-HHHHHHHHHHHHCCCCEEE
T ss_conf 999808867-9999999999873998499
No 311
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.33 E-value=0.8 Score=25.78 Aligned_cols=64 Identities=23% Similarity=0.207 Sum_probs=35.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC--CCC--------CCHHCCCHHHHHCCCCC
Q ss_conf 69999825667899999999989999997399659999982685200278--877--------10220788898448899
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGI--DCL--------RYEWFDDPLIMAGEADI 74 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~--~~~--------~~~~~~d~~~li~~~~I 74 (438)
|||+|+|+|.||+.++-.|..+. .-=++ ...|.+..+..+. ++. ......|+.++ .+.
T Consensus 1 mKI~IIGaG~VG~~~A~~l~~~~--------l~~el-~L~Di~~~~a~g~a~DL~~a~~~~~~~~i~~~~~~~l---~da 68 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRG--------LASEI-VLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADC---KGA 68 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--------CCCEE-EEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCHHHH---CCC
T ss_conf 97999994888999999998679--------98879-9991889845125687662410368816840999997---799
Q ss_pred CEEEEC
Q ss_conf 899986
Q gi|254780900|r 75 DVFVEL 80 (438)
Q Consensus 75 DvVVEl 80 (438)
|+||=.
T Consensus 69 DvVVit 74 (308)
T cd05292 69 DVVVIT 74 (308)
T ss_pred CEEEEC
T ss_conf 999989
No 312
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=85.16 E-value=1.5 Score=23.96 Aligned_cols=130 Identities=12% Similarity=0.039 Sum_probs=68.2
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCC---CHHHHHCCCCCCEEE
Q ss_conf 87269999825667899999999989999997399659999982685200278877102207---888984488998999
Q gi|254780900|r 2 AGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFD---DPLIMAGEADIDVFV 78 (438)
Q Consensus 2 sk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~---d~~~li~~~~IDvVV 78 (438)
++.+||.++|-|.|+.-=++.|. .+|..+.|++-.. +.+...-.......|.. ++.++ .+.++||
T Consensus 22 s~klkvLVVGGG~VA~RKi~~Ll--------~agA~VtVVSP~~-~~el~~L~~~~~I~~i~r~y~~~dL---~~~~LVI 89 (222)
T PRK05562 22 SNKIKVLVIGGGKAAFIKGKTFL--------KKGCYVEILSKEF-SKEFLDLKKYGNLKLIKGNYDKEFI---KDKHLII 89 (222)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--------HCCCEEEEECCCC-CHHHHHHHHCCCEEEEECCCCHHHC---CCCCEEE
T ss_conf 26766999998799999999998--------7899899987866-8899999975986999686797780---8873999
Q ss_pred ECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHH-HHHHHHH
Q ss_conf 864888851135788886327028850417788768999987531396699605645301318-9998764
Q gi|254780900|r 79 ELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPII-RILKNYV 148 (438)
Q Consensus 79 EliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii-~~l~~~l 148 (438)
-+|...+ .-..+.+.|=++|+-|..+.-. ..+.-++-.--.+| .+..--|.+|+-|++ +.+|+-|
T Consensus 90 aATdd~~-lN~~I~~~a~~~~ilvNvvddp---~~~~fi~Paiv~Rg-~L~IAIST~G~SP~lAr~iR~kl 155 (222)
T PRK05562 90 IATDDEE-LNNKIRKHCDRLYKLYIDCSDF---KKGLCVIPYQRSSK-NMVFALNTKGGSPKTSVFIGEKV 155 (222)
T ss_pred EECCCHH-HHHHHHHHHHHHCCEEEECCCC---CCCCEEECEEEEEC-CEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9479889-9999999999809988985788---76817977099728-97999989998979999999999
No 313
>PRK06223 malate dehydrogenase; Reviewed
Probab=84.82 E-value=0.88 Score=25.50 Aligned_cols=97 Identities=21% Similarity=0.294 Sum_probs=48.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC--CCC----------CCHHCCCHHHHHCCC
Q ss_conf 69999825667899999999989999997399659999982685200278--877----------102207888984488
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGI--DCL----------RYEWFDDPLIMAGEA 72 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~--~~~----------~~~~~~d~~~li~~~ 72 (438)
|||+|+|+|+||+.++-.|..+ +.--++ ...|.+.++.++. ++. ......|+.++ .
T Consensus 1 mKI~IiGaG~VG~~~a~~l~~~--------~l~~el-~L~Di~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~d~~~~---~ 68 (312)
T PRK06223 1 MKISIIGAGNVGATLAHLLALK--------ELGKDV-VLFDIPEGIPQGKALDIAESSAVDGFDAKITGTNDYADI---A 68 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--------CCCCEE-EEECCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCHHHH---C
T ss_conf 9799999698999999999857--------998748-997699973367988876514336888479837888995---7
Q ss_pred CCCEEEECCCCCC-CCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHH
Q ss_conf 9989998648888-5113578888632702885041778876899998753
Q gi|254780900|r 73 DIDVFVELIGGED-YPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQ 122 (438)
Q Consensus 73 ~IDvVVEliGg~~-~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~ 122 (438)
+.|+||= ++|.. .|..+ + ......|-..+...++++.+.+.
T Consensus 69 daDiVVi-tag~~rk~g~t--R------~dll~~N~~I~k~i~~~i~~~~p 110 (312)
T PRK06223 69 GSDVVII-TAGVPRKPGMS--R------DDLLGINAKIMKDVGEGIKKYAP 110 (312)
T ss_pred CCCEEEE-ECCCCCCCCCC--H------HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999-06778999988--6------89999878999999999984099
No 314
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase; InterPro: IPR005961 This entry represents the large, tetrameric form of phenylalanine-4-hydroxylase (PAH; 1.14.16.1 from EC), as found in metazoans. PAH irreversibly converts phenylalanine to tyrosine, and is known to be the rate-limiting step in phenylalanine catabolism in some systems. It is closely related to metazoan tyrosine 3-monooxygenase and tryptophan 5-monoxygenase, and more distantly to monomeric phenylalanine-4-hydroxylases of some Gram-negative bacteria. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity . However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered. A deficiency in PAH can lead to phenylketonuria (PKU), an autosomal recessive genetic disorder characterised by an inability to metabolise phenylalanine, resulting in elevated Phe levels in the bloodstream that can lead to mental retardation if left untreated . More information about these proteins can be found at Protein of the Month: Phenylalanine Hydroxylase .; GO: 0004505 phenylalanine 4-monooxygenase activity, 0006559 L-phenylalanine catabolic process.
Probab=84.78 E-value=3.2 Score=21.52 Aligned_cols=73 Identities=15% Similarity=0.317 Sum_probs=39.8
Q ss_pred HCCCCEEEEEEECCC---CCHHHHHHHHHHHCCCCEEEEEECCCCCCC-CEEEEEEEEEECCH-HHHHHHHHHHHCCC
Q ss_conf 446532799992488---874899999988669957888822677877-61359999210488-99999999862383
Q gi|254780900|r 349 EEEKEYFIRLTIRNF---EGILDKITSQMSDFNISLRLFSCPHQEENS-QEFSVFMITHKVSG-KLIRDAIECFNGKS 421 (438)
Q Consensus 349 ~~~~~yYLRl~v~Dk---pGVLa~It~ilak~~ISIesi~Q~~~~~~~-~~~~IViiTh~~~e-~~i~~ai~~i~~l~ 421 (438)
+-...-=|-|+.+|+ .|.|+++-++|.+++|++-=|--.....+. +..++.+-...++. ..+.++|+.+....
T Consensus 14 ~~~~~~~l~Fslk~~sls~GaLa~~L~~F~~~dvNL~HiESRpS~~~~G~~Yef~v~~d~~~~h~~~~~~i~~l~~~~ 91 (445)
T TIGR01268 14 ENSAKTSLIFSLKEESLSAGALAEVLKLFQEHDVNLTHIESRPSKTKPGDEYEFFVELDEKSDHDKLEDVIESLREKA 91 (445)
T ss_pred CCCCCEEEEEECCHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 135777899841400001104899988887568845773045456889971035764124775457999999999852
No 315
>PRK08655 prephenate dehydrogenase; Provisional
Probab=84.67 E-value=2.6 Score=22.19 Aligned_cols=101 Identities=20% Similarity=0.287 Sum_probs=55.3
Q ss_pred EEEEEE-CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC-CCCCHHCCCHHHHHCCCCCCEEEECCC
Q ss_conf 699998-256678999999999899999973996599999826852002788-771022078889844889989998648
Q gi|254780900|r 5 LKVGVA-GLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGID-CLRYEWFDDPLIMAGEADIDVFVELIG 82 (438)
Q Consensus 5 ikIgii-G~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~-~~~~~~~~d~~~li~~~~IDvVVEliG 82 (438)
|||+|+ |.|..|+-+++.+.. .|.+ | .|..|+..+.+... -....+..|..+++.+. |+|+=.+.
T Consensus 1 mkI~IIGG~G~MG~~Fa~~f~~--------sGye--V-~I~gRd~~k~~~va~~LGv~~~~~~~e~~~~a--dvVIvsVP 67 (441)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKD--------KGYE--V-IVWGRDPKKGKEVAKELGVEYASDNIDAAKDG--DIVIVSVP 67 (441)
T ss_pred CEEEEEECCCHHHHHHHHHHHH--------CCCE--E-EEEECCCCHHHHHHHHHCCCCCCCHHHHHHCC--CEEEEECC
T ss_conf 9799994798177999999986--------7988--9-99815731356788873862224478897249--99999848
Q ss_pred CCCCCHHHHHHHH---HHCCEEE--EEECHHHHHHHHHHHHHHHHH
Q ss_conf 8885113578888---6327028--850417788768999987531
Q gi|254780900|r 83 GEDYPAYDAVRIA---LMRGCHV--VTANKALIASHGKDLALLAQK 123 (438)
Q Consensus 83 g~~~pA~~~i~~A---L~~GkhV--VTANKallA~~g~eL~~lA~~ 123 (438)
+ ...-+.+++. |..+.=+ +|.=|.-.. ..+.+.+..
T Consensus 68 -I-~~T~~VI~~laP~l~~~~lL~DitSvK~~p~---~aMl~~~~~ 108 (441)
T PRK08655 68 -I-NVTEDVIREVAPHVKEGSLLMDVTSVKERPV---EAMKEFAPE 108 (441)
T ss_pred -H-HHHHHHHHHHHCCCCCCCEEEECCCCCHHHH---HHHHHHCCC
T ss_conf -8-9999999997424899969998310417799---999975657
No 316
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=84.66 E-value=3.3 Score=21.49 Aligned_cols=65 Identities=9% Similarity=0.103 Sum_probs=30.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 79999248887489999998866995788882267787761359999210488999999998623
Q gi|254780900|r 355 FIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNG 419 (438)
Q Consensus 355 YLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~ 419 (438)
-|-++.+|+||=|-++-+=+++.|.+|=+++.......+..+|+=++-.-..+....+.++.++.
T Consensus 7 tldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~e~ 71 (170)
T COG2061 7 TLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLLEE 71 (170)
T ss_pred EEEEEECCCCCCHHHHHCCHHHCCCCEEEEEEECCCCCCCCEEEEEEEEECCCHHHHHHHHHHHH
T ss_conf 99999448871264443205234861899996137434894048999983562788999999986
No 317
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=84.33 E-value=3.2 Score=21.55 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=14.5
Q ss_pred EEEECCHHHHHHHHHHHHCCC
Q ss_conf 921048899999999862383
Q gi|254780900|r 401 ITHKVSGKLIRDAIECFNGKS 421 (438)
Q Consensus 401 iTh~~~e~~i~~ai~~i~~l~ 421 (438)
+||..+..+..++.+.+..-.
T Consensus 320 it~~~~l~~~~~a~~~~~~~~ 340 (350)
T COG1063 320 ITHRLPLDDAAEAYELFADRK 340 (350)
T ss_pred CCEECCHHHHHHHHHHHHCCC
T ss_conf 024347888999999986067
No 318
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I; InterPro: IPR006424 This group of sequences represent glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilise NAD (1.2.1.12 from EC), NADP (1.2.1.13 from EC) or either (1.2.1.59 from EC). In some species, NAD- and NADP- utilising forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively . An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine . This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria . This enzyme is described by IPR006422 from INTERPRO. These two groups of sequences exhibit a close evolutionary relationship. There exists the possibility that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to possess a limited E4PD activity as well as a robust GAPDH activity ).; GO: 0008943 glyceraldehyde-3-phosphate dehydrogenase activity, 0051287 NAD binding, 0006006 glucose metabolic process.
Probab=84.03 E-value=0.86 Score=25.56 Aligned_cols=144 Identities=22% Similarity=0.321 Sum_probs=76.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEE-EEEEECCCCCC-----------CC--------CC----CCC---
Q ss_conf 99998256678999999999899999973996599-99982685200-----------27--------88----771---
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVV-SAISARDKNID-----------RG--------ID----CLR--- 58 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i-~~i~~r~~~k~-----------~~--------~~----~~~--- 58 (438)
||||=|||.+|+-+++.+.+... .|.++++ ++|-+.+.+.+ -+ +. ...
T Consensus 1 kvgINGFGRIGRlvlR~~~~~~~-----~g~~~~viv~inD~~~~~~~~ayLlkyDSvhG~~~y~~~~f~~~v~~~~~~~ 75 (366)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQG-----SGLDLEVIVAINDLSTDLEKLAYLLKYDSVHGRLAYLYFRFEGEVTVDEDKA 75 (366)
T ss_pred CEEEECCCHHHHHHHHHHHCCCC-----CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHEECCCCCEEEEEECCC
T ss_conf 93651478589999999850578-----8970589983148876889999886412355871103127885288830343
Q ss_pred ----CHH------------CCCHHHHH--CCCCCCEEEECCCCCCCCHHHHHHHHHHCC-----EEEEEEC---HH---H
Q ss_conf ----022------------07888984--488998999864888851135788886327-----0288504---17---7
Q gi|254780900|r 59 ----YEW------------FDDPLIMA--GEADIDVFVELIGGEDYPAYDAVRIALMRG-----CHVVTAN---KA---L 109 (438)
Q Consensus 59 ----~~~------------~~d~~~li--~~~~IDvVVEliGg~~~pA~~~i~~AL~~G-----khVVTAN---Ka---l 109 (438)
..+ ..||.++= +..++|+|||+||-.......-..+=|++| |=|+||= |. +
T Consensus 76 ~~~~~l~v~g~~~~~~~~~~~~P~~lpWt~~~~vD~V~EcTG~f~~~~~~~l~~Hl~~G~~gAkKVlisAP~k~~~~~~~ 155 (366)
T TIGR01534 76 EKTNGLVVNGKVKVIVVASERDPSDLPWTKALGVDIVIECTGKFRDKEKAALEKHLEAGNPGAKKVLISAPFKSKGDAAP 155 (366)
T ss_pred CCCCEEEECCCEEEEEEEECCCHHHCCCHHHHCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEE
T ss_conf 67416888680457887404785377871260732899588750276256898986367994126898368888889602
Q ss_pred HHHHH--HHHHH-HHHHCCCEEEEECCCCCHHHHHHHHH---HHHHCCCCEEEEEEECCCH
Q ss_conf 88768--99998-75313966996056453013189998---7641286203433314200
Q gi|254780900|r 110 IASHG--KDLAL-LAQKNNAILNFEAAVAGGIPIIRILK---NYVEYDEINRVYGIINGTC 164 (438)
Q Consensus 110 lA~~g--~eL~~-lA~~~gv~l~~easV~ggiPii~~l~---~~l~~~~i~~i~GIlnGT~ 164 (438)
.-.+| ++-++ -++++=+. -=++|.=+=.|+++.|. +. .||.+|++
T Consensus 156 t~V~GVN~~~y~~~~~~~iiS-nASCTTNclAP~~kvL~~hfe~---------FGI~~G~M 206 (366)
T TIGR01534 156 TIVYGVNHDEYDDPAEERIIS-NASCTTNCLAPLAKVLDEHFEE---------FGIVSGLM 206 (366)
T ss_pred EEEECCCHHHHCCCCCCEEEE-CCCCHHHHHHHHHHHHHHHHHC---------CCEEEEEE
T ss_conf 788667745604788860898-2555135789999999876510---------43010169
No 319
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=83.75 E-value=3.6 Score=21.23 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=11.9
Q ss_pred EEECCCCCHHHHHHHHHHH
Q ss_conf 9924888748999999886
Q gi|254780900|r 358 LTIRNFEGILDKITSQMSD 376 (438)
Q Consensus 358 l~v~DkpGVLa~It~ilak 376 (438)
|.-.|=||-+-++-+++-.
T Consensus 407 L~~y~WPGNVREL~n~ier 425 (513)
T PRK10820 407 LTRYGWPGNVRQLKNAIYR 425 (513)
T ss_pred HHHCCCCCHHHHHHHHHHH
T ss_conf 9708999799999999999
No 320
>pfam01370 Epimerase NAD dependent epimerase/dehydratase family. This family of proteins utilize NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions.
Probab=83.53 E-value=3.6 Score=21.17 Aligned_cols=107 Identities=19% Similarity=0.265 Sum_probs=50.9
Q ss_pred EEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC-CCCCCCCCH-----H--CCCHHHHHCCCCCCEE
Q ss_conf 99982-5667899999999989999997399659999982685200-278877102-----2--0788898448899899
Q gi|254780900|r 7 VGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNID-RGIDCLRYE-----W--FDDPLIMAGEADIDVF 77 (438)
Q Consensus 7 IgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~-~~~~~~~~~-----~--~~d~~~li~~~~IDvV 77 (438)
|-|.| .|.+|+.+++.|.++ | .++.++ +|+.... ......... + .++..+++.+..+|+|
T Consensus 1 ILItGasGfiG~~l~~~L~~~--------g--~~v~~~-~r~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~D~V 69 (235)
T pfam01370 1 ILVTGGTGFIGSALVRRLLQE--------G--YEVIVL-GRRRRSESLNTGRIRFRFHEGDLTDPDALERLLAEVQPDAV 69 (235)
T ss_pred EEEECCCCHHHHHHHHHHHHC--------C--CEEEEE-ECCCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCEE
T ss_conf 799728979999999999978--------7--989999-89973012221146765999658899999999853899899
Q ss_pred EECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCC-EEEEECCC
Q ss_conf 9864888851135788886327028850417788768999987531396-69960564
Q gi|254780900|r 78 VELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNA-ILNFEAAV 134 (438)
Q Consensus 78 VEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv-~l~~easV 134 (438)
+-+-+....+ . . .+.-......| ...-..|.+.++++++ .|-|=.|.
T Consensus 70 ihlAa~~~~~-~-~----~~~~~~~~~~N----~~~t~~ll~~~~~~~~~~~I~~SS~ 117 (235)
T pfam01370 70 IHLAAQSGVG-A-S----FEDPAEFIRAN----VLGTLNLLEAARRAGVKRFVFASSS 117 (235)
T ss_pred EECCCCCCCH-H-H----HCCHHHHHHHH----HHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9897747832-6-5----51999999999----9999999999998399989992563
No 321
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.13 E-value=3.8 Score=21.06 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECC-------HHHHHHHHHHHHCCCCC
Q ss_conf 888748999999886699578888226778776135999921048-------89999999986238300
Q gi|254780900|r 362 NFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVS-------GKLIRDAIECFNGKSDA 423 (438)
Q Consensus 362 DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~-------e~~i~~ai~~i~~l~~v 423 (438)
-..|-|+++=.+|++|++||+-+.- +.+.+-++.++.+ +..+++.++++++...|
T Consensus 13 ~a~GFLa~VF~if~~~~isVD~ItT-------SEVsVSlTlD~s~~~~~~l~~~~L~~lv~dLek~~~V 74 (78)
T cd04933 13 GQYGFLAKVFSIFETLGISVDVVAT-------SEVSISLTLDPSKLWSRELIQQELDHVVEELEKDAVV 74 (78)
T ss_pred HHCCHHHHHHHHHHHCCCCEEEEEE-------EEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEE
T ss_conf 7744599999999983995699982-------2579999975841012565599999999999870578
No 322
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase; InterPro: IPR005888 The conversion of dTDP-glucose into dTDP-4-keto-6-deoxyglucose by Escherichia coli dTDP-glucose 4,6-dehydratase) takes place in the active site in three steps: dehydrogenation to dTDP-4-ketoglucose, dehydration to dTDP-4-ketoglucose-5,6-ene, and rereduction of C6 to the methyl group. The 4,6-dehydratase makes use of tightly bound NAD^+ as the coenzyme for transiently oxidizing the substrate, activating it for the dehydration step . This and other 4,6-dehydratases catalyze the first committed step in all 6-deoxysugar biosynthetic pathways described to date. Numerous 6-deoxysugars are used in bacterial lipopolysaccharide production as well as in the biosynthesis of a diverse array of secondary metabolites.; GO: 0008460 dTDP-glucose 46-dehydratase activity, 0009225 nucleotide-sugar metabolic process.
Probab=83.07 E-value=3.8 Score=21.06 Aligned_cols=243 Identities=19% Similarity=0.190 Sum_probs=137.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC-----CCCCCCCC-CCCCCHH-------CCCHHHHHCCCCCCEE
Q ss_conf 256678999999999899999973996599999826-----85200278-8771022-------0788898448899899
Q gi|254780900|r 11 GLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISAR-----DKNIDRGI-DCLRYEW-------FDDPLIMAGEADIDVF 77 (438)
Q Consensus 11 G~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r-----~~~k~~~~-~~~~~~~-------~~d~~~li~~~~IDvV 77 (438)
|+|.+|+.|++.+.++.. +.+|+-+ |+ +++--+++ +.+...| ......++...++|.|
T Consensus 7 GaGFIGsnFvry~~~~~~--------D~~v~vl-DkLTYAgn~e~L~~l~~~pr~~Fv~GDI~D~~lv~~~~~e~~~D~V 77 (340)
T TIGR01181 7 GAGFIGSNFVRYILNEHP--------DAEVIVL-DKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVDRLLKEHDPDAV 77 (340)
T ss_pred CCCHHHHHHHHHHHHHCC--------CCEEEEE-ECCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCEE
T ss_conf 785256899999997479--------9579986-3544557865552332396615674230228899888400176778
Q ss_pred EECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH-HHHHHHHCCCCEEE
Q ss_conf 98648888511357888863270288504177887689999875313966996056453013189-99876412862034
Q gi|254780900|r 78 VELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIR-ILKNYVEYDEINRV 156 (438)
Q Consensus 78 VEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~-~l~~~l~~~~i~~i 156 (438)
|.. .|-+++-.+|..=---|..|= += -..|.+++++..-.|. |+.=++ ++ .+ ..+.|+ +
T Consensus 78 vhF------AAESHVDRSI~~P~~F~~TNv--~G--T~tLLEA~R~~w~aL~-e~~~a~----~r~l~--HiSTDE---V 137 (340)
T TIGR01181 78 VHF------AAESHVDRSISGPEAFIETNV--VG--TYTLLEAVRKYWHALR-EAKKAG----VRKLH--HISTDE---V 137 (340)
T ss_pred EEC------CCCCHHHHCCCCCHHHHHCCH--HH--HHHHHHHHHHHCCCCC-CCCCCC----CEEEE--EEECCE---E
T ss_conf 862------220523330145411444033--78--8999999974044566-445131----02635--760301---4
Q ss_pred EEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCC---CCCCCCHHHHHHHHHHHHH-HHHCCCCCCCCC-----HH
Q ss_conf 33314200000000100687788998878761761565---3223211789999999999-981885553100-----01
Q gi|254780900|r 157 YGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGD---ATFDINGVDSSHKIAILSA-IAFGIDTSVEGV-----YC 227 (438)
Q Consensus 157 ~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~D---P~~Di~G~Daa~Kl~ILa~-~~~g~~~~~~~v-----~~ 227 (438)
+|=|.-|=-+= |+|.| |+-==+=-=||.=++++|. --||.+...... ++
T Consensus 138 YGdl~~~~~~~----------------------ftE~tpl~PsSPYSASKAasD~LVrAy~rTYGLp~~ITrCsNNYGPY 195 (340)
T TIGR01181 138 YGDLEKGDPAS----------------------FTETTPLAPSSPYSASKAASDLLVRAYHRTYGLPVLITRCSNNYGPY 195 (340)
T ss_pred ECCCCCCCCEE----------------------EEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 40467896734----------------------42327887787245889888789888887548860576885577875
Q ss_pred HHHHHCCHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCC
Q ss_conf 22320476740347871985874101331367835699998641677300036654168983113100589726876661
Q gi|254780900|r 228 EGISNITLEDIRGAADFGYCIKFLAMARRKGKGIIRYVYPVLLKYDSVMALVDGITNAVVIETNGLGKLTMTGPGAGGSA 307 (438)
Q Consensus 228 ~gI~~i~~~di~~a~~~g~~ikli~~~~~~~~~i~~~V~P~li~~~~~la~v~g~~Nai~i~~~~~g~~~~~G~GAG~~~ 307 (438)
|--+++=|..|.-|.. |..+..=| +|-.+| =.|==.||-=| .. .|.-.| ..|++--.|- |.+-
T Consensus 196 QfpEKLIPl~I~nal~-G~plPvYG------dG~~vR--DWlyV~DHcrA----~~-~VL~~G-~~GE~YNIgg--~~Er 258 (340)
T TIGR01181 196 QFPEKLIPLMITNALA-GKPLPVYG------DGQQVR--DWLYVEDHCRA----IE-LVLEKG-RVGEVYNIGG--GNER 258 (340)
T ss_pred CCCCCCHHHHHHHHHC-CCCCCCCC------CCCCCE--EEEEHHHHHHH----HH-HHHHCC-CCCCEEECCC--CCCC
T ss_conf 6742013689999873-89983301------788320--32452347899----99-998269-5212564378--7622
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 02068899999974
Q gi|254780900|r 308 TASAVLGDICSIAK 321 (438)
Q Consensus 308 TAsaV~sDli~i~~ 321 (438)
|===||.=|+++.-
T Consensus 259 ~NlE~V~~Il~~lg 272 (340)
T TIGR01181 259 TNLEVVEIILELLG 272 (340)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 12889999998743
No 323
>pfam07755 DUF1611 Protein of unknown function (DUF1611). This region is found in a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.
Probab=83.05 E-value=1.6 Score=23.63 Aligned_cols=70 Identities=20% Similarity=0.175 Sum_probs=44.2
Q ss_pred HHCCCHHHHHCCCCCCEEEE---CCCCCCCCH-HHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 22078889844889989998---648888511-35788886327028850417788768999987531396699605
Q gi|254780900|r 60 EWFDDPLIMAGEADIDVFVE---LIGGEDYPA-YDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEA 132 (438)
Q Consensus 60 ~~~~d~~~li~~~~IDvVVE---liGg~~~pA-~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~ea 132 (438)
.++.+..+.+. ...+.+|= .-||.=.+. +..+++||++|.+||+-=-..++. -++|.++|+++|+++. +-
T Consensus 21 Pi~~sl~eA~~-~g~~~liiGiA~~GG~lp~~w~~~i~~Ai~~GldIvsGLH~~L~d-dp~l~~~A~~~g~~i~-Dv 94 (302)
T pfam07755 21 PIVSSLEEALA-AGADTLIIGIAPSGGVLPEAWREVLLEALEAGLDVVSGLHEFLSD-DPELAAAAKKHGVQII-DV 94 (302)
T ss_pred CEECCHHHHHH-CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHC-CHHHHHHHHHCCCEEE-EE
T ss_conf 98676999986-699989997416888489899999999998289262335777514-8989999998699799-91
No 324
>PRK08210 aspartate kinase I; Reviewed
Probab=82.81 E-value=3.9 Score=20.98 Aligned_cols=248 Identities=10% Similarity=0.082 Sum_probs=112.4
Q ss_pred HHHHHHHCCCCEEEEEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH-----HHHHHHHHHC
Q ss_conf 99876412862034333142000000001006877889988787617615653223211789999-----9999999818
Q gi|254780900|r 143 ILKNYVEYDEINRVYGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHK-----IAILSAIAFG 217 (438)
Q Consensus 143 ~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~K-----l~ILa~~~~g 217 (438)
.+++.|...++-=+.|-.-.|.+-..|.+-..|.+|..++ -|..|+=.|-.=--||+|+-+|-- ...|.++.|.
T Consensus 125 ~~~~~l~~~~v~vv~GF~g~~~~g~~ttLGRGGSD~TA~~-la~~l~A~~~~iwtDV~Gv~taDPr~v~~a~~i~~lsy~ 203 (405)
T PRK08210 125 RILEALEEGDVVVVAGFQGATENGDITTLGRGGSDTTAAA-LGVALKAEYIDIYTDVDGIMTADPRIVEDARLLDVVSYN 203 (405)
T ss_pred HHHHHHHCCCEEEECCCEEECCCCCEEEECCCCCCHHHHH-HHHHCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCHH
T ss_conf 9999874598599617465468995666258873279999-998639988999856776563799827665111624999
Q ss_pred CCCCCCCCHHHHHHHCCHHHHHHHHHCCCEEEEEEEEEECCCCCEEE-EEEEE---EECCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 85553100012232047674034787198587410133136783569-99986---416773000366541689831131
Q gi|254780900|r 218 IDTSVEGVYCEGISNITLEDIRGAADFGYCIKFLAMARRKGKGIIRY-VYPVL---LKYDSVMALVDGITNAVVIETNGL 293 (438)
Q Consensus 218 ~~~~~~~v~~~gI~~i~~~di~~a~~~g~~ikli~~~~~~~~~i~~~-V~P~l---i~~~~~la~v~g~~Nai~i~~~~~ 293 (438)
.- .+...-|-.=+.|.-++.|.+.+-.++....-. ...|-... ..+.. -+++++...+....|..
T Consensus 204 Ea---~ELa~~GakVlhp~tv~pa~~~~Ipi~I~nT~~-~~~GT~I~~~~~~~~~~~~~~~~VtgIa~~~~i~------- 272 (405)
T PRK08210 204 EV---FQMAYQGAKVIHPRAVEIAMQANIPLRIRSTYS-DSKGTLITSYGDATKGSDVEERLITGIAHVSNVT------- 272 (405)
T ss_pred HH---HHHHHCCCCCCCHHHHHHHHHCCCEEEEECCCC-CCCCCEEECCCCCCCCCCCCCCCEEEEEECCCEE-------
T ss_conf 99---999977986368899999997398399973689-9998679346765445543334248898028879-------
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCC-------CCCCCCCCCCCCCCCCCHHHCCCCEE-----EEEE--
Q ss_conf 005897268766610206889999997417777655-------66667831002344388534465327-----9999--
Q gi|254780900|r 294 GKLTMTGPGAGGSATASAVLGDICSIAKTNTQKSVS-------WALGKESSSFSVIHCDGVYEEEKEYF-----IRLT-- 359 (438)
Q Consensus 294 g~~~~~G~GAG~~~TAsaV~sDli~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~yY-----LRl~-- 359 (438)
.+.+.|.+ ...++.+.++.+.......... ..|........... .-.++....+- =.++
T Consensus 273 -~i~i~~~~-----~~~g~~~~if~~la~~~IsVd~Is~s~~~i~ftv~~~d~~~~~-~il~el~~~~~v~~~~a~VSvV 345 (405)
T PRK08210 273 -QIKVKAKE-----NAYDLQQEVFKALAEAGISVDLINIFPTEVVFTVSDEDSEKAK-EILEELGLKPSVTENCAKVSIV 345 (405)
T ss_pred -EEEEECCC-----CCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEECHHHHHHHH-HHHHHCCCCEEEECCEEEEEEE
T ss_conf -99996589-----9616899999999984981799993347679997589999999-9999748965996795999998
Q ss_pred ---ECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHC
Q ss_conf ---248887489999998866995788882267787761359999210488999999998623
Q gi|254780900|r 360 ---IRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNG 419 (438)
Q Consensus 360 ---v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~ 419 (438)
....||+.+++.+.|++.+|+|-.+.+ ++-...++ ..+++...|++.|-.
T Consensus 346 G~gM~~~~Gvaarif~aL~~~~InIi~~~s-----Se~nIS~v-----V~~~d~~~Av~aLH~ 398 (405)
T PRK08210 346 GAGMRGVPGVMAKIVTALSEEGIEILQSAD-----SHTTIWCL-----VKEEDLEKAVNALHD 398 (405)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEC-----CCCEEEEE-----EEHHHHHHHHHHHHH
T ss_conf 876135823999999999868986899835-----68689999-----818999999999999
No 325
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=82.65 E-value=2.1 Score=22.84 Aligned_cols=172 Identities=17% Similarity=0.100 Sum_probs=85.5
Q ss_pred EEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEEECCCCCC
Q ss_conf 99982-56678999999999899999973996599999826852002788771022078889844889989998648888
Q gi|254780900|r 7 VGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFVELIGGED 85 (438)
Q Consensus 7 IgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVVEliGg~~ 85 (438)
|.|.| .|-||+.+...|.++.. + +-|..|+..+.+..........+...+.. +-.+|+||.|-|-.
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh----------~-v~iltR~~~~~~~~~~~~v~~~~~~~~~~-~~~~DavINLAG~~- 67 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH----------Q-VTILTRRPPKASQNLHPNVTLWEGLADAL-TLGIDAVINLAGEP- 67 (297)
T ss_pred CEEECCCCCHHHHHHHHHHHCCC----------E-EEEEECCCCCHHHHCCCCCCCCCHHHHCC-CCCCCEEEECCCCC-
T ss_conf 95735665016899999984898----------6-99997478502332476533430124403-67877899888981-
Q ss_pred CCHH-------HHHH-----------HH---HHCCEE-----------------EEEECH-------HHHHHHHHHHHHH
Q ss_conf 5113-------5788-----------88---632702-----------------885041-------7788768999987
Q gi|254780900|r 86 YPAY-------DAVR-----------IA---LMRGCH-----------------VVTANK-------ALIASHGKDLALL 120 (438)
Q Consensus 86 ~pA~-------~~i~-----------~A---L~~Gkh-----------------VVTANK-------allA~~g~eL~~l 120 (438)
...+ +.+. ++ .+.+-+ ++|-|. +-+|..|++....
T Consensus 68 I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~g~~Fla~lc~~WE~~a~~ 147 (297)
T COG1090 68 IAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEESPPGDDFLAQLCQDWEEEALQ 147 (297)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 54465788999999997768999999999852679808985245777558886464157888777599999999999866
Q ss_pred HHHCCCEE---EE---ECCCCCHHHHHHHHHHHHHCCCC-------------------------EEEEEEECCCHHHHEE
Q ss_conf 53139669---96---05645301318999876412862-------------------------0343331420000000
Q gi|254780900|r 121 AQKNNAIL---NF---EAAVAGGIPIIRILKNYVEYDEI-------------------------NRVYGIINGTCNYILS 169 (438)
Q Consensus 121 A~~~gv~l---~~---easV~ggiPii~~l~~~l~~~~i-------------------------~~i~GIlnGT~nyIL~ 169 (438)
|+.-|..+ ++ =+.-||.+|-+.++...-.|.++ ..++|.+|=|.-+=
T Consensus 148 a~~~gtRvvllRtGvVLs~~GGaL~~m~~~fk~glGG~~GsGrQ~~SWIhieD~v~~I~fll~~~~lsGp~N~taP~P-- 225 (297)
T COG1090 148 AQQLGTRVVLLRTGVVLSPDGGALGKMLPLFKLGLGGKLGSGRQWFSWIHIEDLVNAILFLLENEQLSGPFNLTAPNP-- 225 (297)
T ss_pred HHHCCCEEEEEEEEEEECCCCCCHHHHCCHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCC--
T ss_conf 640684699998877861788603431013552257715898730343329999999999984757777510358986--
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 010068778899887876176156532
Q gi|254780900|r 170 HMNNLGLSFQDCLEEARRQGYAEGDAT 196 (438)
Q Consensus 170 ~m~~~g~~f~~al~~Aq~lGyaE~DP~ 196 (438)
. ....|..+|..|...=.-=+=|.
T Consensus 226 --V-~~~~F~~al~r~l~RP~~~~vP~ 249 (297)
T COG1090 226 --V-RNKEFAHALGRALHRPAILPVPS 249 (297)
T ss_pred --C-CHHHHHHHHHHHHCCCCCCCCCH
T ss_conf --7-28999999999867995356938
No 326
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.56 E-value=3.6 Score=21.23 Aligned_cols=57 Identities=12% Similarity=0.176 Sum_probs=45.0
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCC
Q ss_conf 24888748999999886699578888226778776135999921048899999999862383
Q gi|254780900|r 360 IRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKS 421 (438)
Q Consensus 360 v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~ 421 (438)
...+.|-..++.++|.+++||+|-+ |. +=+...||+=++..+....+..++.|+..-
T Consensus 11 MN~EvGF~rKvL~IlE~~~IS~EHm----PS-GID~~siiv~~~~l~~~~~~~ii~~I~~~l 67 (76)
T cd04911 11 MNREVGFGRKLLSILEDNGISYEHM----PS-GIDDISIIIRDNQLTDEKEQKILAEIKEEL 67 (76)
T ss_pred HCHHHHHHHHHHHHHHHCCCCEEEC----CC-CCCEEEEEEEHHHCCCHHHHHHHHHHHHHC
T ss_conf 0204648999999999839986455----88-866089998868747058999999999762
No 327
>PTZ00325 malate dehydrogenase; Provisional
Probab=82.21 E-value=1.4 Score=24.18 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=18.5
Q ss_pred CEEEEEECC-CHHHHHHHHHHHH
Q ss_conf 269999825-6678999999999
Q gi|254780900|r 4 VLKVGVAGL-GTVGSALIRSIQK 25 (438)
Q Consensus 4 ~ikIgiiG~-G~VG~~~~~~l~~ 25 (438)
|.||+|+|+ |.||+.++-.|..
T Consensus 1 m~KV~IIGA~G~VG~s~A~~l~~ 23 (313)
T PTZ00325 1 MFKVAVLGAAGGIGQPLSLLLKR 23 (313)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH
T ss_conf 93899989998699999999983
No 328
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=82.18 E-value=3.2 Score=21.61 Aligned_cols=46 Identities=22% Similarity=0.170 Sum_probs=23.6
Q ss_pred HCCCHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECH
Q ss_conf 20788898448899899986488885113578888632702885041
Q gi|254780900|r 61 WFDDPLIMAGEADIDVFVELIGGEDYPAYDAVRIALMRGCHVVTANK 107 (438)
Q Consensus 61 ~~~d~~~li~~~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTANK 107 (438)
.-+|....+....|.++-.- |.+..-.++++.++|..+-+++.-+-
T Consensus 82 TQDdvaAaL~~~Gi~VfA~~-g~t~eey~~~~~~~L~~~P~iiiDDG 127 (427)
T PRK05476 82 TQDHAAAALAAAGIPVFAWK-GETLEEYWEAIERALDWGPNMILDDG 127 (427)
T ss_pred CCHHHHHHHHHCCEEEEEEC-CCCHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 45799999986891699978-98999999999997555998787565
No 329
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=81.91 E-value=4.2 Score=20.75 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=9.5
Q ss_pred CEEEEEECHHHHHHHHHHHHHHHH
Q ss_conf 702885041778876899998753
Q gi|254780900|r 99 GCHVVTANKALIASHGKDLALLAQ 122 (438)
Q Consensus 99 GkhVVTANKallA~~g~eL~~lA~ 122 (438)
|.+|-...|.-+..+-+++-+.|+
T Consensus 62 G~nVTiP~K~~i~~~lD~ld~~A~ 85 (272)
T PRK12550 62 GCAVSMPFKEACIPLVDELDPSAK 85 (272)
T ss_pred EEEECCCCHHHHHHHHCCCCHHHH
T ss_conf 899864369999998543688899
No 330
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=81.83 E-value=3.2 Score=21.57 Aligned_cols=57 Identities=12% Similarity=0.146 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEE----ECCHHHHHHHHHHHHCCCCCC
Q ss_conf 4888748999999886699578888226778776135999921----048899999999862383000
Q gi|254780900|r 361 RNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITH----KVSGKLIRDAIECFNGKSDAI 424 (438)
Q Consensus 361 ~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh----~~~e~~i~~ai~~i~~l~~v~ 424 (438)
....|-|+++-.+|++|+||++-|.-- .+.|-++-+ ...+..++.+++.|++...|+
T Consensus 332 ~~~~GFla~vF~i~~~~~isvDli~TS-------Evsvs~tld~~~~~~~~~~~~~l~~~l~~~~~~~ 392 (865)
T PRK08961 332 WQQVGFLADVFTLFKKHGLSVDLIGSA-------ETNVTVSLDPSENLVNTDVLAALSDDLSQICKVK 392 (865)
T ss_pred HHHCCHHHHHHHHHHHCCCCEEEEEEE-------EEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCEE
T ss_conf 211365999999999839954899602-------4689999668645467799999999998542368
No 331
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=81.79 E-value=1.5 Score=23.82 Aligned_cols=68 Identities=19% Similarity=0.323 Sum_probs=39.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC--CCCCHH---CCCHHHHH--CCCCCCEE
Q ss_conf 699998256678999999999899999973996599999826852002788--771022---07888984--48899899
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGID--CLRYEW---FDDPLIMA--GEADIDVF 77 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~--~~~~~~---~~d~~~li--~~~~IDvV 77 (438)
|||-|+|+|.||+.+++.|... +.+ ++ +.+++..+-+.+. ++-..+ -+++..+- .-.+.|+|
T Consensus 1 M~IiI~GaG~vG~~La~~Ls~e--------~~d--V~-vID~d~~~~~~~~~~lDv~~i~Gd~~~~~~L~~Agi~~ad~~ 69 (455)
T PRK09496 1 MKIIILGAGQVGGTLAERLVGE--------NND--VT-VIDTDEERLRRLQDRLDVRTVVGNGSHPDVLREAGAEDADML 69 (455)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--------CCC--EE-EEECCHHHHHHHHHHCCEEEEEECCCCHHHHHHCCCCCCCEE
T ss_conf 9799999888999999999868--------997--99-998999999998862586899966899999996599869999
Q ss_pred EECCCC
Q ss_conf 986488
Q gi|254780900|r 78 VELIGG 83 (438)
Q Consensus 78 VEliGg 83 (438)
|-+|+.
T Consensus 70 IAvT~~ 75 (455)
T PRK09496 70 IAVTDS 75 (455)
T ss_pred EEECCC
T ss_conf 995797
No 332
>TIGR00656 asp_kin_monofn asparate kinase, monofunctional class; InterPro: IPR005260 Aspartate kinase catalyzes the first step in the biosynthesis of Lys (via its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of these three amino acid end products . The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenase, which catalyses the next step in the biosynthesis of these amino acids. Inn contrast, the Lys-sensitive form (III) is a monofunctional enzyme; homoserine dehydrogenase is not part of the Lys biosynthetic pathway. This entry represents a subclass of aspartate kinases that are mostly Lys-sensitive and are not fused to homoserine dehydrogenase. The E. coli enzyme is a homodimer, while the Bacillus and Corynebacterium enzymes are alpha 2/beta 2 heterotetramers, where the beta subunit is translated from an in-phase alternative initiator at Met-246 , . The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases. ; GO: 0004072 aspartate kinase activity, 0009058 biosynthetic process.
Probab=81.66 E-value=3.9 Score=20.94 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=34.0
Q ss_pred EEEE-EEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEE
Q ss_conf 2799-99248887489999998866995788882267787761359999
Q gi|254780900|r 354 YFIR-LTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMI 401 (438)
Q Consensus 354 yYLR-l~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IVii 401 (438)
+-++ ....+++|+++.+.+.+++++||++.+.|...++ +..+.+++-
T Consensus 330 ~~~~g~~~~~~~g~~~~~~~~la~~~~~~~~~~~~~~~d-~~~~~~~~~ 377 (480)
T TIGR00656 330 LTVPGPGMLGKPGFLAELFGALAERGINVDLISQTPSED-KTSISLTVD 377 (480)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCC-CCEEEEEEE
T ss_conf 886054323554058899988741574289985067766-330589972
No 333
>PRK10083 putative dehydrogenase; Provisional
Probab=81.60 E-value=4.3 Score=20.68 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=18.8
Q ss_pred EEEEECCHHHHHHHHHHHHCCC
Q ss_conf 9921048899999999862383
Q gi|254780900|r 400 MITHKVSGKLIRDAIECFNGKS 421 (438)
Q Consensus 400 iiTh~~~e~~i~~ai~~i~~l~ 421 (438)
+|||..+-.++.+|.+.+++-+
T Consensus 306 lIt~~f~L~~~~~A~~~~~~~~ 327 (339)
T PRK10083 306 LITHTFDFQHVADAIELFEKDQ 327 (339)
T ss_pred EEEEEEEHHHHHHHHHHHHCCC
T ss_conf 0899989899999999986599
No 334
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=81.41 E-value=4.3 Score=20.63 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=20.1
Q ss_pred EEEEECCHHHHHHHHHHHHCCCCC
Q ss_conf 992104889999999986238300
Q gi|254780900|r 400 MITHKVSGKLIRDAIECFNGKSDA 423 (438)
Q Consensus 400 iiTh~~~e~~i~~ai~~i~~l~~v 423 (438)
++||..+-.++++|.+.+++-...
T Consensus 302 ~i~~~~~l~~~~~A~~~l~~~~~~ 325 (332)
T PRK13771 302 VIAGHVSLSDIDKALEMLKDKSHI 325 (332)
T ss_pred EEEEEEEHHHHHHHHHHHHCCCCC
T ss_conf 572798289999999999779986
No 335
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=81.40 E-value=4.3 Score=20.63 Aligned_cols=59 Identities=14% Similarity=0.061 Sum_probs=37.0
Q ss_pred EEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCC
Q ss_conf 992488874899999988669957888822677877613599992104889999999986238
Q gi|254780900|r 358 LTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGK 420 (438)
Q Consensus 358 l~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l 420 (438)
.--.|+||..+++++.+++++-+|....+..- .+.++-+.++. -+...+...-..|+.+
T Consensus 6 ~iG~DrpGiv~~vs~~v~~~gcNi~dSrmt~l--g~~Fa~imlvs--G~w~~ia~lE~~L~~L 64 (77)
T cd04893 6 ALGTDRPGILNELTRAVSESGCNILDSRMAIL--GTEFALTMLVE--GSWDAIAKLEAALPGL 64 (77)
T ss_pred EECCCCCHHHHHHHHHHHHCCCCEEHHHHHHH--HCCEEEEEEEE--CCHHHHHHHHHHHHHH
T ss_conf 96289865999999999986998724378887--36038999995--2888999999862777
No 336
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=81.22 E-value=3.1 Score=21.64 Aligned_cols=148 Identities=18% Similarity=0.259 Sum_probs=76.6
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC----CCC-----------CCC----C-------
Q ss_conf 26999982566789999999998999999739965999998268520----027-----------887----7-------
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI----DRG-----------IDC----L------- 57 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k----~~~-----------~~~----~------- 57 (438)
+-.|-|-|||.+|+=++++|.++.. .|..+++.+|.+|.... +|. |+. +
T Consensus 129 p~DVVLYGFGRIGRLlAR~Lie~~g-----~g~~lrLrAIVvR~~~~~DL~KRAsLLr~DSvHG~F~Gti~vd~e~~~li 203 (479)
T PRK08289 129 PRDVVLYGFGRIGRLLARLLIEKTG-----GGNGLRLRAIVVRKGKEGDLEKRASLLRRDSVHGPFNGTITVDEENNAII 203 (479)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHC-----CCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEE
T ss_conf 8757997673799999999998628-----98746899999835965779999987601354667476089957889799
Q ss_pred ----CC--HHCCCHHHHH-CCCCCC--EEEECCCCCCCCHHHHHHHHHHC---CEEEEEEC-HHHH--HHHHHHHHHHHH
Q ss_conf ----10--2207888984-488998--99986488885113578888632---70288504-1778--876899998753
Q gi|254780900|r 58 ----RY--EWFDDPLIMA-GEADID--VFVELIGGEDYPAYDAVRIALMR---GCHVVTAN-KALI--ASHGKDLALLAQ 122 (438)
Q Consensus 58 ----~~--~~~~d~~~li-~~~~ID--vVVEliGg~~~pA~~~i~~AL~~---GkhVVTAN-Kall--A~~g~eL~~lA~ 122 (438)
.. ...+||.++- .+-.|| +|||.+|-... .+-..+-|++ .|-++||- |+-+ -.+|---..+-.
T Consensus 204 vNG~~I~v~~~~~P~~i~~~~~gi~~a~vie~TG~f~~--~~~~~~Hl~~~Ga~kV~lsaP~k~~~~~iV~GVN~~~~~~ 281 (479)
T PRK08289 204 ANGNYIQVIYANSPEEVDYTAYGINNALVVDNTGIWRD--EEGLGQHLKSPGVAKVLLTAPGKGDIKNIVHGVNHSDITD 281 (479)
T ss_pred ECCEEEEEEECCCHHHCCHHHHCCCEEEEEECCCCCCC--HHHHHHHHCCCCCCEEEEECCCCCCCCEEEECCCHHHCCC
T ss_conf 89959999978991019523409850389956673124--7787535348776869993578887534897456666698
Q ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHH
Q ss_conf 139669960564530131899987641286203433314200000
Q gi|254780900|r 123 KNNAILNFEAAVAGGIPIIRILKNYVEYDEINRVYGIINGTCNYI 167 (438)
Q Consensus 123 ~~gv~l~~easV~ggiPii~~l~~~l~~~~i~~i~GIlnGT~nyI 167 (438)
+..+.=-=++|.-+=.|+++.|.+.+ ||-+|...=|
T Consensus 282 ~~~IiSnASCTTNclAPv~KvL~d~f---------GI~~G~mtTV 317 (479)
T PRK08289 282 EDKIVSAASCTTNAITPVLKAVNDKY---------GIVNGHVETV 317 (479)
T ss_pred CCCEEECCCHHHHHHHHHHHHHHHCC---------CEEEEEEEEE
T ss_conf 66467547626531789999875334---------7479998863
No 337
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=80.71 E-value=4.6 Score=20.47 Aligned_cols=52 Identities=15% Similarity=0.265 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHH
Q ss_conf 4888748999999886699578888226778776135999921048899999999862
Q gi|254780900|r 361 RNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFN 418 (438)
Q Consensus 361 ~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~ 418 (438)
..+.|-+.+|-++|.+|++|++-+.- +...+++++=.... .+.++.++++|+
T Consensus 11 ~~~~GF~~~v~~il~~~~isv~~i~t-----~~~svs~~l~~~~~-~~~l~~l~~~L~ 62 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIPT-----SENSVTLYLDDSLL-PKKLKRLLAELE 62 (62)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEEC-----CCCEEEEEECCCCC-HHHHHHHHHHHC
T ss_conf 13265589999999981998798706-----64379999821012-057999999749
No 338
>PTZ00188 adrenodoxin reductase; Provisional
Probab=80.66 E-value=4.4 Score=20.57 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=35.3
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC----CCCCCCCC--C-HHCCCHHHHHCCCCC
Q ss_conf 8726999982566789999999998999999739965999998268520----02788771--0-220788898448899
Q gi|254780900|r 2 AGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI----DRGIDCLR--Y-EWFDDPLIMAGEADI 74 (438)
Q Consensus 2 sk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k----~~~~~~~~--~-~~~~d~~~li~~~~I 74 (438)
.+|+||||+|-|--|--.++.|.++ . +++| -+..|-+.. ..++.++. . ..++.+.++.++|.+
T Consensus 37 ~rPlRVAIVGSGPAGfYaA~~Llk~-------~--~v~V-D~fErLP~PfGLVRyGVAPDHpevKnv~~~f~~~a~~p~~ 106 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKH-------E--RVKV-DIFEKLPNPYGLIRYGVAPDHIHVKNTYRTFDLVFSSPNY 106 (506)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHCC-------C--CCEE-EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 8765799988883899999999638-------9--9779-8882689887411104688985660689999999658975
Q ss_pred C
Q ss_conf 8
Q gi|254780900|r 75 D 75 (438)
Q Consensus 75 D 75 (438)
.
T Consensus 107 r 107 (506)
T PTZ00188 107 R 107 (506)
T ss_pred E
T ss_conf 9
No 339
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase; InterPro: IPR011304 This entry represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme functions as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities.; GO: 0004459 L-lactate dehydrogenase activity, 0019642 anaerobic glycolysis, 0005737 cytoplasm.
Probab=80.28 E-value=3.3 Score=21.49 Aligned_cols=60 Identities=22% Similarity=0.177 Sum_probs=34.5
Q ss_pred EECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC--CCC---------C-CCHHCCCHHHHHCCCCCCE
Q ss_conf 982566789999999998999999739965999998268520027--887---------7-1022078889844889989
Q gi|254780900|r 9 VAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRG--IDC---------L-RYEWFDDPLIMAGEADIDV 76 (438)
Q Consensus 9 iiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~--~~~---------~-~~~~~~d~~~li~~~~IDv 76 (438)
|+|.|+||++++--|..+ |+.=|++-| |-+.+|.++ .++ + ...+..||.+. .|.|+
T Consensus 1 iiG~G~VGss~A~a~~~~--------g~a~E~vli-Din~~ka~Gea~DL~ha~~f~~~~~~~v~~gdY~dc---~daD~ 68 (302)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ--------GLADEIVLI-DINKDKAEGEAMDLQHAASFLPTPGVKVRAGDYSDC---KDADL 68 (302)
T ss_pred CCCCCCHHHHHHHHHHHC--------CCCCEEEEE-ECCHHHHHHHHHHHHCCHHHCCCCCEEEECCCHHHH---CCCCE
T ss_conf 911486189999999731--------503188788-347577898786552222223786117761897996---38978
Q ss_pred EEEC
Q ss_conf 9986
Q gi|254780900|r 77 FVEL 80 (438)
Q Consensus 77 VVEl 80 (438)
||=.
T Consensus 69 vVIT 72 (302)
T TIGR01771 69 VVIT 72 (302)
T ss_pred EEEE
T ss_conf 9993
No 340
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=80.25 E-value=1.6 Score=23.59 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=18.3
Q ss_pred EEEEEECC-CHHHHHHHHHHHH
Q ss_conf 69999825-6678999999999
Q gi|254780900|r 5 LKVGVAGL-GTVGSALIRSIQK 25 (438)
Q Consensus 5 ikIgiiG~-G~VG~~~~~~l~~ 25 (438)
|||+|+|+ |.||+.++-.|..
T Consensus 1 mKV~IiGAaG~VG~~~a~~l~~ 22 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAK 22 (309)
T ss_pred CEEEEECCCCHHHHHHHHHHHH
T ss_conf 9899999997699999999983
No 341
>pfam05221 AdoHcyase S-adenosyl-L-homocysteine hydrolase.
Probab=80.21 E-value=4 Score=20.87 Aligned_cols=20 Identities=10% Similarity=0.356 Sum_probs=11.5
Q ss_pred HHHHH-HHHHCCCCEEEEEEC
Q ss_conf 99999-988669957888822
Q gi|254780900|r 368 DKITS-QMSDFNISLRLFSCP 387 (438)
Q Consensus 368 a~It~-ilak~~ISIesi~Q~ 387 (438)
.+|+. -|..-||+|+.+.+.
T Consensus 391 ~~VA~lkL~~lg~~id~Lt~e 411 (430)
T pfam05221 391 EKVARLHLGKLGVKLTKLTDK 411 (430)
T ss_pred HHHHHHHHHHCCCEECCCCHH
T ss_conf 999999898659874438999
No 342
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=80.12 E-value=4.8 Score=20.34 Aligned_cols=22 Identities=50% Similarity=0.726 Sum_probs=18.9
Q ss_pred EEEEEEC-CCHHHHHHHHHHHHH
Q ss_conf 6999982-566789999999998
Q gi|254780900|r 5 LKVGVAG-LGTVGSALIRSIQKR 26 (438)
Q Consensus 5 ikIgiiG-~G~VG~~~~~~l~~~ 26 (438)
|||-+.| .|.||+.+++.|.++
T Consensus 1 MriLVTGgtGfiG~~l~~~L~~~ 23 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLER 23 (328)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC
T ss_conf 94999867779999999999978
No 343
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=79.92 E-value=4.5 Score=20.50 Aligned_cols=22 Identities=5% Similarity=-0.102 Sum_probs=9.0
Q ss_pred HHHHHHHHCCCEEEEECCCCCH
Q ss_conf 9998753139669960564530
Q gi|254780900|r 116 DLALLAQKNNAILNFEAAVAGG 137 (438)
Q Consensus 116 eL~~lA~~~gv~l~~easV~gg 137 (438)
.||+.|-.-+..++=|+..+.|
T Consensus 139 ~lf~~A~~~aKrVrteT~I~~~ 160 (414)
T PRK13940 139 RVFQKVFATAKRVRSETRIGHC 160 (414)
T ss_pred HHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999987788762345888
No 344
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=79.90 E-value=4.8 Score=20.29 Aligned_cols=70 Identities=19% Similarity=0.099 Sum_probs=43.9
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEEECC
Q ss_conf 7269999825667899999999989999997399659999982685200278877102207888984488998999864
Q gi|254780900|r 3 GVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFVELI 81 (438)
Q Consensus 3 k~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVVEli 81 (438)
+.=+|.++|.|..|..+++.+.++.. ..++++++.+-.... ....+..--.+|..+.+.+.+||-|+=+.
T Consensus 143 n~r~v~IvG~~~~~~~l~~~i~~~p~-------~G~~vvG~~dd~~~~--~~~~~~lG~~~~l~~~~~~~~id~V~ial 212 (464)
T PRK10124 143 NTRMVAVAGDLPAGQMLLESFRNQPW-------LGFEVVGVYHDPKPG--GVSNDWAGNLQQLVEDAKAGKIHNVYIAM 212 (464)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCC-------CCCEEEEEECCCCCC--CCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 84389998388899999999972966-------796699996688766--67899878999999999868999899966
No 345
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=79.80 E-value=2 Score=23.01 Aligned_cols=208 Identities=13% Similarity=0.092 Sum_probs=85.8
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC----CCCCCCC------------CCCHHCCCHHH
Q ss_conf 2699998256678999999999899999973996599999826852----0027887------------71022078889
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKN----IDRGIDC------------LRYEWFDDPLI 67 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~----k~~~~~~------------~~~~~~~d~~~ 67 (438)
|+||+|+|+|-||+-++-.|.+ .|.++.++ +|... +..++.+ ......+++.+
T Consensus 2 mmkI~IiGaGAvG~~~a~~L~~--------aG~~V~lv---~r~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~ 70 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAA--------AGADVTLI---GRARIGDEIRAHGLRLTDYRGRDVRVPPDAIAFSTDPAA 70 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--------CCCCEEEE---ECHHHHHHHHHCCCEEECCCCCEEEECCCEEEECCCHHH
T ss_conf 4779998967999999999985--------89987999---567899999967909963899768963661561488656
Q ss_pred HHCCCCCCEEEECCCCCCC-CHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 8448899899986488885-113578888632702885041778876899998753139669960564530131899987
Q gi|254780900|r 68 MAGEADIDVFVELIGGEDY-PAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILKN 146 (438)
Q Consensus 68 li~~~~IDvVVEliGg~~~-pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~~ 146 (438)
+ ...|+++=++=..+. .+.+.+...+..+-.|++.=-++ .+.+.|.+.--+..+ . .+.+..| ..+.
T Consensus 71 ~---~~~D~viv~vKa~~~~~a~~~l~~~l~~~t~il~lQNGl--g~~e~l~~~~~~~~v--~-~g~~~~~-----~~~~ 137 (341)
T PRK08229 71 L---ATADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGV--RNADVLRAALPGATV--L-AGMVPFN-----VISR 137 (341)
T ss_pred C---CCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCC--CCHHHHHHHCCCCCE--E-EEEEEEC-----EEEE
T ss_conf 5---899989997075788999999986438996899950477--719999986899829--9-9997855-----0996
Q ss_pred HHHCCCCEEEEEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH----HHHCCCCC-
Q ss_conf 6412862034333142000000001006877889988787617615653223211789999999999----98188555-
Q gi|254780900|r 147 YVEYDEINRVYGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHKIAILSA----IAFGIDTS- 221 (438)
Q Consensus 147 ~l~~~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa~----~~~g~~~~- 221 (438)
....++. .-.| ++.+. ..+....+.++-...--+...+.|+.+ .-..|+++=++ ..+|.+..
T Consensus 138 --gpg~~~~---~~~g--~~~~~-----~~~~~~~l~~~l~~agi~~~~~~dI~~-~~W~KL~~N~~n~l~al~~~~~~~ 204 (341)
T PRK08229 138 --GPGHFHQ---GTSG--ALAIE-----ASPALRPFAAAFERAGLPLVTHEDMRA-VQWAKLLLNLNNAVNALSGLPLKE 204 (341)
T ss_pred --CCCEEEE---CCCC--CCCCC-----CCHHHHHHHHHHHHCCCCCEECCHHHH-HHHHHHHHHCCCHHHHHHCCCHHH
T ss_conf --6947996---3788--60678-----887899999999847999776730799-999999865457588874997576
Q ss_pred -CC-CCHHHHHHHCCHHHHHHHHHCCCEE
Q ss_conf -31-0001223204767403478719858
Q gi|254780900|r 222 -VE-GVYCEGISNITLEDIRGAADFGYCI 248 (438)
Q Consensus 222 -~~-~v~~~gI~~i~~~di~~a~~~g~~i 248 (438)
++ .-+.+-+..+-.|-++-++..|+.+
T Consensus 205 ~~~~~~~~~~~~~~~~E~~~v~~a~gi~~ 233 (341)
T PRK08229 205 ELAQRSYRRCLALAQREALRVLKAAGIRP 233 (341)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 75294799999999999999999769970
No 346
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=79.64 E-value=4.9 Score=20.24 Aligned_cols=10 Identities=20% Similarity=0.328 Sum_probs=4.0
Q ss_pred HHHCCCCEEE
Q ss_conf 8866995788
Q gi|254780900|r 374 MSDFNISLRL 383 (438)
Q Consensus 374 lak~~ISIes 383 (438)
|...||.|+.
T Consensus 395 L~~~G~~i~~ 404 (420)
T COG0499 395 LEAMGIELDE 404 (420)
T ss_pred HHHHCCEEEE
T ss_conf 9971844122
No 347
>PTZ00117 malate dehydrogenase; Provisional
Probab=79.50 E-value=1.8 Score=23.31 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=35.5
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC--CCCCC--------CHH--CCCHHHHHCC
Q ss_conf 26999982566789999999998999999739965999998268520027--88771--------022--0788898448
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRG--IDCLR--------YEW--FDDPLIMAGE 71 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~--~~~~~--------~~~--~~d~~~li~~ 71 (438)
|-||+|+|+|.||+.++-.+.. .+.. ++. ..|.+..+.++ .++.. ..+ +.|+.++
T Consensus 1 M~KV~IIGaG~VG~~~A~~l~~--------~~~~-eiv-LiDi~~~~a~g~a~Dl~h~~~~~~~~~~i~~~~dy~~~--- 67 (313)
T PTZ00117 1 MKKISIIGSGQIGAIVGLLLLQ--------ENLG-DVY-LYDVIEGVPQGKALDLKHFSTIIGVNANILGTNNYEDI--- 67 (313)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--------CCCC-EEE-EEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHH---
T ss_conf 9789998979899999999970--------8998-799-99588983088998877242036898579837999996---
Q ss_pred CCCCEEEEC
Q ss_conf 899899986
Q gi|254780900|r 72 ADIDVFVEL 80 (438)
Q Consensus 72 ~~IDvVVEl 80 (438)
.+.|+||=.
T Consensus 68 ~daDiVVit 76 (313)
T PTZ00117 68 KDSDVIVIT 76 (313)
T ss_pred CCCCEEEEC
T ss_conf 899999989
No 348
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=79.47 E-value=5 Score=20.20 Aligned_cols=136 Identities=13% Similarity=-0.009 Sum_probs=63.1
Q ss_pred CCEEEEEECCCHHHHHH-HHHHHHHH---HHHHHHCCCCEEEEEEEECCCCCCCC-CCCCCCHHCCC-HHHHHCCCCCCE
Q ss_conf 72699998256678999-99999989---99999739965999998268520027-88771022078-889844889989
Q gi|254780900|r 3 GVLKVGVAGLGTVGSAL-IRSIQKRE---GRFKDLDQHSFVVSAISARDKNIDRG-IDCLRYEWFDD-PLIMAGEADIDV 76 (438)
Q Consensus 3 k~ikIgiiG~G~VG~~~-~~~l~~~~---~~l~~~~g~~i~i~~i~~r~~~k~~~-~~~~~~~~~~d-~~~li~~~~IDv 76 (438)
+.+|+.++|-+.||+.- +..+..+. +.+....+.++....+........-. .+......+.. ..... ...|+
T Consensus 3 ~vfk~~VlG~~~VGKTsLi~rf~~~~f~~~~y~~Ti~~~~~~k~v~v~g~~~~L~i~Dt~g~e~~~~l~~~~~--~~ad~ 80 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAEL--AACDV 80 (169)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHH--CCCCE
T ss_conf 0899999999998899999999649998666567546618999999899999999985565323556658875--46988
Q ss_pred EEECCCCCCCCHHHHHHHHHHCC-----EE-EEEECHHHHH----HHHHHHHHHHHHCCCEEEEECCCCCHHHH
Q ss_conf 99864888851135788886327-----02-8850417788----76899998753139669960564530131
Q gi|254780900|r 77 FVELIGGEDYPAYDAVRIALMRG-----CH-VVTANKALIA----SHGKDLALLAQKNNAILNFEAAVAGGIPI 140 (438)
Q Consensus 77 VVEliGg~~~pA~~~i~~AL~~G-----kh-VVTANKallA----~~g~eL~~lA~~~gv~l~~easV~ggiPi 140 (438)
++=+---++.-.++++...++.. .. |+-+||.=+. ....|-.+.|+++|..+.||.|.--|-=|
T Consensus 81 ~ilVyDit~~~SF~~i~~~~~~~~~~~~iP~vlVgNK~DL~~~rqV~~~e~~~~a~~~~~~~~~e~SAktg~nv 154 (169)
T cd01892 81 ACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSS 154 (169)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCH
T ss_conf 99999799878999999999970056898189998865542037546776999999839996669983279898
No 349
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.44 E-value=3.6 Score=21.24 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCH----HHHHHHHHHHHCCCCCC
Q ss_conf 48887489999998866995788882267787761359999210488----99999999862383000
Q gi|254780900|r 361 RNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSG----KLIRDAIECFNGKSDAI 424 (438)
Q Consensus 361 ~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e----~~i~~ai~~i~~l~~v~ 424 (438)
....|-|+++-.+|++|+||++-+.-- .+.+-++-+++.. .-.+.++++|+.+..|.
T Consensus 12 ~~~~GFLa~vF~if~~h~isVDlitTS-------EvsVslTlD~~~~~~~~~l~~~ll~eL~~~~~V~ 72 (75)
T cd04932 12 LHAQGFLAKVFGILAKHNISVDLITTS-------EISVALTLDNTGSTSDQLLTQALLKELSQICDVK 72 (75)
T ss_pred HHHCCHHHHHHHHHHHCCCCEEEEECC-------EEEEEEEECCCCCCCHHHHHHHHHHHHHHCCEEE
T ss_conf 665367999999999819954899704-------2699999758875303667999999999606289
No 350
>PRK08605 D-lactate dehydrogenase; Validated
Probab=79.40 E-value=5 Score=20.19 Aligned_cols=19 Identities=11% Similarity=0.268 Sum_probs=10.8
Q ss_pred CEEEEEECCCHHHHHHHHH
Q ss_conf 2699998256678999999
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRS 22 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~ 22 (438)
|+||.+.|.-..=..+.+.
T Consensus 1 m~Ki~~~~~~~~e~~~~~~ 19 (332)
T PRK08605 1 MTKIKLMSVRDEDAPYIKA 19 (332)
T ss_pred CCEEEEEECCHHHHHHHHH
T ss_conf 9769998276656999999
No 351
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC; InterPro: IPR011967 This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring . The sequences included in this entry are all found in possible operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN . Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. .
Probab=79.39 E-value=1.4 Score=24.19 Aligned_cols=166 Identities=16% Similarity=0.217 Sum_probs=79.6
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC-CCCC-----------C---CCC--CCH---
Q ss_conf 9872699998256678999999999899999973996599999826852-0027-----------8---877--102---
Q gi|254780900|r 1 MAGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKN-IDRG-----------I---DCL--RYE--- 60 (438)
Q Consensus 1 Msk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~-k~~~-----------~---~~~--~~~--- 60 (438)
|.+..+|++||.|++|+|.+++-- +.|..+.+ .|.+.+ ..++ + .+. ..+
T Consensus 2 l~~~v~vaVIGaGaMGaGIA~VAA--------~aGH~V~L---YD~r~eA~a~a~agIe~~L~~lV~kgkL~a~e~e~~l 70 (508)
T TIGR02279 2 LINVVKVAVIGAGAMGAGIAQVAA--------RAGHQVLL---YDIRAEALARAVAGIEKRLKSLVEKGKLTAEEAERTL 70 (508)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHH--------HCCCEEEE---ECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 654106899646852103899998--------25984887---2288899999999999998887523777788888887
Q ss_pred ----HCCCHHHHHCCCCCCEEEECCCCCCCCHHHHHHHH-------HHCCEEEEEECHHHHH--HHHHHHHHHHHHCCCE
Q ss_conf ----20788898448899899986488885113578888-------6327028850417788--7689999875313966
Q gi|254780900|r 61 ----WFDDPLIMAGEADIDVFVELIGGEDYPAYDAVRIA-------LMRGCHVVTANKALIA--SHGKDLALLAQKNNAI 127 (438)
Q Consensus 61 ----~~~d~~~li~~~~IDvVVEliGg~~~pA~~~i~~A-------L~~GkhVVTANKallA--~~g~eL~~lA~~~gv~ 127 (438)
=.++..+ -.+-|+|||+| .|. .+. |++ |----.++|.|--=|+ .=.-+|.+=-+=.|..
T Consensus 71 ~Rl~PV~~l~a---lAdAgLvIEAi--vE~--L~V-K~aLFaqLe~lc~ad~iiasNTSSlSIta~AAglarP~rvaGlH 142 (508)
T TIGR02279 71 KRLVPVTDLEA---LADAGLVIEAI--VEN--LEV-KKALFAQLEELCTADAIIASNTSSLSITALAAGLARPERVAGLH 142 (508)
T ss_pred HCCCCHHHHHH---HHHCCCCHHHH--HHH--HHH-HHHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 31787789999---86027322467--740--677-79999989863670152562325777999997313877075111
Q ss_pred EEEECCCCCHHHHH----------HHHHHH-HH-C-CCCEEEEEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 99605645301318----------999876-41-2-86203433314200000000100687788998878761761565
Q gi|254780900|r 128 LNFEAAVAGGIPII----------RILKNY-VE-Y-DEINRVYGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGD 194 (438)
Q Consensus 128 l~~easV~ggiPii----------~~l~~~-l~-~-~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~D 194 (438)
|+==|=+|+=+=|+ .+|-+. .+ | .-|+. ..|=.||-++.-. ==|+|+|+-=||. ++|
T Consensus 143 FFNPAP~MaLVEVVSGLaT~~eVae~ly~~a~aWGK~PVh~-----~STPGFIVNRVAR--PyYaEalR~L~E~---~A~ 212 (508)
T TIGR02279 143 FFNPAPVMALVEVVSGLATEAEVAEQLYETARAWGKQPVHA-----RSTPGFIVNRVAR--PYYAEALRVLEEQ---VAE 212 (508)
T ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCC-----CCCCCCEECCCCC--CHHHHHHHHHHCC---CCC
T ss_conf 34865536215662363542899999999987328856323-----4698823426567--3178999873025---768
Q ss_pred C
Q ss_conf 3
Q gi|254780900|r 195 A 195 (438)
Q Consensus 195 P 195 (438)
|
T Consensus 213 p 213 (508)
T TIGR02279 213 P 213 (508)
T ss_pred H
T ss_conf 4
No 352
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=79.32 E-value=1.9 Score=23.09 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=17.5
Q ss_pred EEEEECCCHHHHHHHHHHHH
Q ss_conf 99998256678999999999
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQK 25 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~ 25 (438)
||+|+|+|+||+.++-.|..
T Consensus 2 KI~IIGaG~VG~~~a~~l~~ 21 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN 21 (306)
T ss_pred EEEEECCCHHHHHHHHHHHH
T ss_conf 59999969889999999985
No 353
>PRK09034 aspartate kinase; Reviewed
Probab=78.93 E-value=5.2 Score=20.09 Aligned_cols=52 Identities=15% Similarity=0.248 Sum_probs=38.9
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 248887489999998866995788882267787761359999210488999999998623
Q gi|254780900|r 360 IRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNG 419 (438)
Q Consensus 360 v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~ 419 (438)
....||+.+++-+.|++++|+|.-+.|- . ++-...+|+ .+++.+.|++.|..
T Consensus 395 m~~~~Gva~r~f~aL~~~~InI~~Isqg-s--Se~nIs~vV-----~~~d~~~Av~aLH~ 446 (450)
T PRK09034 395 MRKTVGVAAKITKALAEAKINIRMINQG-S--SEISIMFGV-----HNEDEEKAVKAIYN 446 (450)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEECC-C--CCCEEEEEE-----CHHHHHHHHHHHHH
T ss_conf 2579379999999999789987998227-8--877799998-----58999999999999
No 354
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=78.87 E-value=5.2 Score=20.08 Aligned_cols=87 Identities=24% Similarity=0.203 Sum_probs=49.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC----CCCCCC-------CCCC---------------
Q ss_conf 69999825667899999999989999997399659999982685----200278-------8771---------------
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDK----NIDRGI-------DCLR--------------- 58 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~----~k~~~~-------~~~~--------------- 58 (438)
=+|.++|+|.+|+-++..|. ..|+. -..+.|.|. +..|.+ ..++
T Consensus 29 s~VlvvG~GGLG~~~~~yLa--------~aGvG--~i~i~D~D~ve~sNL~RQ~l~~~~~iG~~K~~~a~~~l~~~np~i 98 (355)
T PRK05597 29 AKVSVIGAGGLGSPALLYLA--------GAGVG--HITIIDDDVVDLSNLHRQVIHTTAGVGTPKAESAREAMLALNPDV 98 (355)
T ss_pred CCEEEECCCHHHHHHHHHHH--------HCCCC--EEEEEECCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 96899877766899999999--------84997--599972999261213377565412179797999999999878997
Q ss_pred ------CHH-CCCHHHHHCCCCCCEEEECCCCCCCCHHH--HHHHHHHCCEEEEEEC
Q ss_conf ------022-07888984488998999864888851135--7888863270288504
Q gi|254780900|r 59 ------YEW-FDDPLIMAGEADIDVFVELIGGEDYPAYD--AVRIALMRGCHVVTAN 106 (438)
Q Consensus 59 ------~~~-~~d~~~li~~~~IDvVVEliGg~~~pA~~--~i~~AL~~GkhVVTAN 106 (438)
..+ .++..+++. +.|+||+++ |.++.. +-..|.+.||..|.+.
T Consensus 99 ~i~~~~~~l~~~na~~li~--~~DvVvD~t---Dn~~tR~lind~c~~~~~PlV~ga 150 (355)
T PRK05597 99 KVTVSVRRLDWSNALSELA--DADVILDGS---DNFDTRHVASWAAARLGIPHVWAS 150 (355)
T ss_pred CEEEEHHHCCHHHHHHHHH--CCCEEEECC---CCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 4275332157778997752--887898767---888899999999998699879965
No 355
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=78.65 E-value=5.3 Score=20.03 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=23.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 69999825667899999999989999997399659999982685
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDK 48 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~ 48 (438)
-+|.|+|+|..|+.++..|. +.|+. -..+.|+|.
T Consensus 25 a~VlVvGaGGLGs~~a~~La--------~aGVG--~i~ivD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLV--------RAGVG--KVTIVDRDY 58 (339)
T ss_pred CCEEEECCCHHHHHHHHHHH--------HCCCC--EEEEEECCE
T ss_conf 97899877777799999999--------84898--299980999
No 356
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=78.51 E-value=5.3 Score=20.01 Aligned_cols=17 Identities=6% Similarity=0.401 Sum_probs=9.0
Q ss_pred HHHH-HHHHCCCCEEEEE
Q ss_conf 9999-9886699578888
Q gi|254780900|r 369 KITS-QMSDFNISLRLFS 385 (438)
Q Consensus 369 ~It~-ilak~~ISIesi~ 385 (438)
+|+. -|+.-++.|+.+.
T Consensus 382 ~VA~lkL~~~g~~id~Lt 399 (413)
T cd00401 382 EVARLHLGKLGVKLTKLT 399 (413)
T ss_pred HHHHHHHHHCCCEECCCC
T ss_conf 999999986598615489
No 357
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=78.48 E-value=1.9 Score=23.16 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=17.6
Q ss_pred EEEEEEC-CCHHHHHHHHHHHH
Q ss_conf 6999982-56678999999999
Q gi|254780900|r 5 LKVGVAG-LGTVGSALIRSIQK 25 (438)
Q Consensus 5 ikIgiiG-~G~VG~~~~~~l~~ 25 (438)
|||+|+| .|+||+.++-.|..
T Consensus 1 mKV~IIGA~G~VG~~~A~~l~~ 22 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKL 22 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHH
T ss_conf 9899999998189999999972
No 358
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=78.45 E-value=3 Score=21.81 Aligned_cols=127 Identities=16% Similarity=0.150 Sum_probs=68.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC-CCCCCCCCCCCCHHCCCHHHHHCCCCCCEEEECCCC
Q ss_conf 6999982566789999999998999999739965999998268-520027887710220788898448899899986488
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARD-KNIDRGIDCLRYEWFDDPLIMAGEADIDVFVELIGG 83 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~-~~k~~~~~~~~~~~~~d~~~li~~~~IDvVVEliGg 83 (438)
-+|.++|-|.||.-=++.| ..+|.++.+ ++..- .+...-..-....|.++..+.-...+.++|+-+|+.
T Consensus 13 k~VlvvGgG~va~rKa~~l--------l~~ga~v~V--vs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d 82 (210)
T COG1648 13 KKVLVVGGGSVALRKARLL--------LKAGADVTV--VSPEFEPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDD 82 (210)
T ss_pred CEEEEECCCHHHHHHHHHH--------HHCCCEEEE--ECCCCCHHHHHHHHHCCCCHHHCCCCHHHHCCCEEEEEECCC
T ss_conf 7799989989999999999--------746997999--878744999999983485310022363653682499991699
Q ss_pred CCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH-HHHH
Q ss_conf 88511357888863270288504177887689999875313966996056453013189-9987
Q gi|254780900|r 84 EDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIR-ILKN 146 (438)
Q Consensus 84 ~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~-~l~~ 146 (438)
.+ ....+.+.|-++++-|-.+.+... +.-.+-..-+.+ .+...=|.+|.-|++. .+|+
T Consensus 83 ~~-ln~~i~~~a~~~~i~vNv~D~p~~---~~f~~Pa~~~r~-~l~iaIsT~G~sP~la~~ir~ 141 (210)
T COG1648 83 EE-LNERIAKAARERRILVNVVDDPEL---CDFIFPAIVDRG-PLQIAISTGGKSPVLARLLRE 141 (210)
T ss_pred HH-HHHHHHHHHHHHCCCEEECCCCCC---CCEEECEEECCC-CEEEEEECCCCCHHHHHHHHH
T ss_conf 89-999999999993993560488465---856601054358-879999779977499999999
No 359
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=78.38 E-value=5.4 Score=19.98 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=23.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 69999825667899999999989999997399659999982685
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDK 48 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~ 48 (438)
-+|.|+|+|..|+.++..|. +.|+. -..+.|+|.
T Consensus 25 s~VlIVGaGGLGs~~a~~La--------~aGVG--~l~ivD~D~ 58 (337)
T PRK12475 25 KHVLIIGAGALGAANAEALV--------RAGIG--KLTIADRDY 58 (337)
T ss_pred CCEEEECCCHHHHHHHHHHH--------HCCCC--EEEEEECCE
T ss_conf 96999977777899999999--------82898--699984998
No 360
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=78.07 E-value=4.1 Score=20.82 Aligned_cols=51 Identities=16% Similarity=0.299 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCC
Q ss_conf 48887489999998866995788882267787761359999210488999999998623830
Q gi|254780900|r 361 RNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSD 422 (438)
Q Consensus 361 ~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~ 422 (438)
-|.+|+|++|.+-|++++|+|=.+.-.+ .+ .|.+ .++++++|.+.|+...+
T Consensus 74 FgltGilasV~~pLsd~gigIFavStyd----tD--hiLV-----r~~dLekAv~~L~eaGh 124 (128)
T COG3603 74 FGLTGILASVSQPLSDNGIGIFAVSTYD----TD--HILV-----REEDLEKAVKALEEAGH 124 (128)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEECC----CC--EEEE-----EHHHHHHHHHHHHHCCC
T ss_conf 7830414665445765795279997125----74--6998-----34559999999997087
No 361
>TIGR00657 asp_kinases aspartate kinase; InterPro: IPR001341 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate kinase (2.7.2.4 from EC) (AK) catalyzes the first reaction in the aspartate pathway; the phosphorylation of aspartate. The product of this reaction can then be used in the biosynthesis of lysine or in the pathway leading to homoserine, which participates in the biosynthesis of threonine, isoleucine and methionine . In bacteria there are three different aspartate kinase isozymes which differ in sensitivity to repression and inhibition by Lys, Met and Thr. AK1 and AK2 are bifunctional enzymes which both consist of an N-terminal AK domain and a C-terminal homoserine dehydrogenase domain. AK1 is involved in threonine biosynthesis and AK2, in that of methionine. The third isozyme, AK3 is monofunctional and involved in lysine synthesis. In archaea and plants there may be a single isozyme of AK which in plants is multifunctional. This entry represents a region encoding aspartate kinase activity found in both the monofunctional and bifunctional enzymes. Synonym(s): Aspartokinase; GO: 0004072 aspartate kinase activity, 0008652 amino acid biosynthetic process.
Probab=77.99 E-value=5.5 Score=19.90 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=31.7
Q ss_pred HHHH-CCCCEEEEEEECCCHHHHEEHHHCCCCCHHHH-HHHHHHCCCCCCCCCCCCCHH
Q ss_conf 7641-28620343331420000000010068778899-887876176156532232117
Q gi|254780900|r 146 NYVE-YDEINRVYGIINGTCNYILSHMNNLGLSFQDC-LEEARRQGYAEGDATFDINGV 202 (438)
Q Consensus 146 ~~l~-~~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~a-l~~Aq~lGyaE~DP~~Di~G~ 202 (438)
..|. |+.|-=+.|=+=.|-+-=+|-+-..|-+|+.+ |+.| |+=-|-+=-=||+|+
T Consensus 189 ~~L~~g~~ipvvaGF~G~~~~g~~TtLGRGGSD~tA~llA~a--L~Ad~~~IyTDV~Gi 245 (504)
T TIGR00657 189 PLLEEGDIIPVVAGFQGATEKGEITTLGRGGSDYTAALLAAA--LKADECEIYTDVDGI 245 (504)
T ss_pred HHHHCCCEEEEEEEEEECCCCCEEEEEECCHHHHHHHHHHHH--HCCCEEEEEECCCCC
T ss_conf 998469879998400410577507983068068999999986--199689998727950
No 362
>PTZ00075 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=77.97 E-value=3.9 Score=20.93 Aligned_cols=13 Identities=8% Similarity=0.184 Sum_probs=6.7
Q ss_pred HHHCCCCEEEEEE
Q ss_conf 8866995788882
Q gi|254780900|r 374 MSDFNISLRLFSC 386 (438)
Q Consensus 374 lak~~ISIesi~Q 386 (438)
|..-||.|+.+.+
T Consensus 443 L~~lG~~ld~LT~ 455 (476)
T PTZ00075 443 LKKLGAKLTKLTD 455 (476)
T ss_pred HHHCCCEECCCCH
T ss_conf 9865977354899
No 363
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=77.93 E-value=5.5 Score=19.89 Aligned_cols=22 Identities=32% Similarity=0.804 Sum_probs=18.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHH
Q ss_conf 6999982566789999999998
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKR 26 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~ 26 (438)
++||++|+|.+|..+++.+.++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ 22 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG 22 (300)
T ss_pred CCCEEECCCHHHHHHHHHHHHC
T ss_conf 9011540005269999999838
No 364
>TIGR01777 yfcH conserved hypothetical protein TIGR01777; InterPro: IPR010099 This entry represents proteins of unknown function including the Escherichia coli YfcH protein..
Probab=77.89 E-value=4 Score=20.90 Aligned_cols=203 Identities=14% Similarity=0.127 Sum_probs=111.4
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC-CCCCHHCC------CHHHHH--CCCCCCEEEEC
Q ss_conf 2-56678999999999899999973996599999826852002788-77102207------888984--48899899986
Q gi|254780900|r 11 G-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGID-CLRYEWFD------DPLIMA--GEADIDVFVEL 80 (438)
Q Consensus 11 G-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~-~~~~~~~~------d~~~li--~~~~IDvVVEl 80 (438)
| .|-||+.+++.|.++.. -+.|..|+....+... .....+.+ +..+-- ..+.+|+||.|
T Consensus 6 gnTGfiG~~L~~~L~~~g~-----------~V~~l~R~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~W~~l~~~DaviNL 74 (307)
T TIGR01777 6 GNTGFIGRALTQRLTKSGH-----------EVTILTRSPQAESNTKKVGYKNWLAEGKLGIVIAESGWSALEGADAVINL 74 (307)
T ss_pred CCCCHHHHHHHHHHHHCCC-----------EEEEEEECCCCCCCHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEEC
T ss_conf 3302378999999984799-----------89999616864320002554455552212452072205667886279855
Q ss_pred CCCCCCCH-HHHH------------------HHHHHC------CEEE-----------------EEEC---H------HH
Q ss_conf 48888511-3578------------------888632------7028-----------------8504---1------77
Q gi|254780900|r 81 IGGEDYPA-YDAV------------------RIALMR------GCHV-----------------VTAN---K------AL 109 (438)
Q Consensus 81 iGg~~~pA-~~~i------------------~~AL~~------GkhV-----------------VTAN---K------al 109 (438)
-|-. ... +-|. -+++++ .-+| +|=+ + +-
T Consensus 75 AG~~-i~~P~RWt~~~K~~i~~SRi~~T~~L~~~i~~~~r~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~~~~ddFla~ 153 (307)
T TIGR01777 75 AGEP-IADPKRWTEERKQEIRDSRIDTTRALVEAIAAAPRAEQKPKVFISASAVGYYGHSEDRVFTEEDASGPGDDFLAE 153 (307)
T ss_pred CCCC-CCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCCCEEECCCCCCCCCCCHHH
T ss_conf 6888-577888787775756523347899999999846566788716885016663068998215116678887772189
Q ss_pred HHHHHHHHHHHHHHCCCEE---EE---ECCCCCHHHHHHHHHHHHHCCCC-------------------------EEEEE
Q ss_conf 8876899998753139669---96---05645301318999876412862-------------------------03433
Q gi|254780900|r 110 IASHGKDLALLAQKNNAIL---NF---EAAVAGGIPIIRILKNYVEYDEI-------------------------NRVYG 158 (438)
Q Consensus 110 lA~~g~eL~~lA~~~gv~l---~~---easV~ggiPii~~l~~~l~~~~i-------------------------~~i~G 158 (438)
+|..|++....|++-|++. ++ =+.=||.+|-+..+-....|-++ ..++|
T Consensus 154 lc~~WE~~A~~a~~~g~Rvv~~R~G~VLg~~GGaL~~m~~pf~~glGGplG~G~Q~~SWIH~~D~v~~I~~~l~~~~~~G 233 (307)
T TIGR01777 154 LCRDWEEAAQAAEQLGTRVVLLRTGIVLGPKGGALAKMLPPFRLGLGGPLGSGRQWFSWIHIEDLVQLILFALENASVSG 233 (307)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999998510533687389876413470898703454566765157423688414505358899999999985589963
Q ss_pred EECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHH
Q ss_conf 31420000000010068778899887876176156532232117899999999999818855531000122320476740
Q gi|254780900|r 159 IINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHKIAILSAIAFGIDTSVEGVYCEGISNITLEDI 238 (438)
Q Consensus 159 IlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa~~~~g~~~~~~~v~~~gI~~i~~~di 238 (438)
++|.|.=.-.+ +..|..+|..|-..=+-=+=|+ -.-+++||..-. +-.+| +++-|
T Consensus 234 p~N~tAP~Pv~-----n~~F~~~la~~l~RP~~~~vP~-------------~~~~~~LGe~a~---~~L~g-QrV~P--- 288 (307)
T TIGR01777 234 PVNATAPEPVR-----NKEFAKALARALHRPAFLPVPA-------------FVLRLLLGEMAD---LLLKG-QRVLP--- 288 (307)
T ss_pred CEEEECCCCCC-----HHHHHHHHHHHHCCCCCCCCHH-------------HHHHHHHHHHHH---HHHHH-HHHHH---
T ss_conf 25410788635-----7899999999818970101108-------------999988425588---89865-78999---
Q ss_pred HHHHHCCCEEEE
Q ss_conf 347871985874
Q gi|254780900|r 239 RGAADFGYCIKF 250 (438)
Q Consensus 239 ~~a~~~g~~ikl 250 (438)
+.+.+.||..++
T Consensus 289 ~kl~~~GF~F~Y 300 (307)
T TIGR01777 289 EKLLEAGFQFQY 300 (307)
T ss_pred HHHHHCCCEEEC
T ss_conf 999974976621
No 365
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=77.84 E-value=5.6 Score=19.87 Aligned_cols=66 Identities=11% Similarity=0.147 Sum_probs=50.4
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf 999248887489999998866995788882267787761359999210488999999998623830004735
Q gi|254780900|r 357 RLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRYSC 428 (438)
Q Consensus 357 Rl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~~~ 428 (438)
-++..|+-|..-+|-.+|..++|++..+--.. . + -+.+-.....-.++++.+.+|.+.+.|....+
T Consensus 4 eI~c~DRiGi~~eiL~lL~~~~IdL~giEi~~-~-g----~IYl~~~~l~f~~~~~Lm~~ir~I~GV~dVkt 69 (74)
T cd04877 4 EITCEDRLGITQEVLDLLVEHNIDLRGIEIDP-K-G----RIYLNFPTIEFEKLQTLMPEIRRIDGVEDVKT 69 (74)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECC-C-C----EEEEECCCCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 99973000149999999997799832888726-8-8----18997787898999999999847898316788
No 366
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=77.69 E-value=5.6 Score=19.84 Aligned_cols=87 Identities=21% Similarity=0.167 Sum_probs=49.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC----CCCCCCC-----CCCC----------------
Q ss_conf 69999825667899999999989999997399659999982685----2002788-----7710----------------
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDK----NIDRGID-----CLRY---------------- 59 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~----~k~~~~~-----~~~~---------------- 59 (438)
=+|.++|+|..|+.++..|. ..|+. -..+.|.|. +..|.+- ....
T Consensus 43 a~VlvvG~GGLG~~~~~yLa--------aaGvG--~i~ivD~D~v~~sNL~RQil~~~~dvG~~K~~~a~~~l~~~Np~v 112 (392)
T PRK07878 43 ARVLVIGAGGLGSPTLLYLA--------AAGVG--TIGIVEFDVVDESNLQRQIIHGQSDVGRSKAQSARDSIVEINPLV 112 (392)
T ss_pred CCEEEECCCHHHHHHHHHHH--------HCCCC--EEEEECCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCC
T ss_conf 97899878757899999999--------82897--599987899674557720056843358707999999999878985
Q ss_pred -------HH-CCCHHHHHCCCCCCEEEECCCCCCCCHHH--HHHHHHHCCEEEEEEC
Q ss_conf -------22-07888984488998999864888851135--7888863270288504
Q gi|254780900|r 60 -------EW-FDDPLIMAGEADIDVFVELIGGEDYPAYD--AVRIALMRGCHVVTAN 106 (438)
Q Consensus 60 -------~~-~~d~~~li~~~~IDvVVEliGg~~~pA~~--~i~~AL~~GkhVVTAN 106 (438)
.+ .++..++++ +.|+||+++ |.++.. +-..|.+.||..|.+.
T Consensus 113 ~v~~~~~~l~~~n~~~li~--~~DvViD~t---DN~~tR~lindac~~~~~PlV~ga 164 (392)
T PRK07878 113 NVRLHEFRLEPSNAVDLFA--QYDLILDGT---DNFATRYLVNDAAVLAGKPYVWGS 164 (392)
T ss_pred CCEEHHHCCCHHHHHHHHC--CCCEEEECC---CCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 3121131378889876431--776898668---998999999999999699879976
No 367
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=77.29 E-value=5.8 Score=19.77 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=43.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC-CCCCCCHHCCCHHHHHCCCCCCEEEEC
Q ss_conf 6999982566789999999998999999739965999998268520027-887710220788898448899899986
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRG-IDCLRYEWFDDPLIMAGEADIDVFVEL 80 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~-~~~~~~~~~~d~~~li~~~~IDvVVEl 80 (438)
-|+-++|.|.-|..+++.+.++.+ ...+++++.+-+...... ...+..-..+|..++++..++|-|+=+
T Consensus 129 rrvLIIG~g~~~~~l~~~l~~~~~-------~G~~vvG~vdd~~~~~~~~~~~pvlg~~~~l~~~i~~~~ideViia 198 (451)
T TIGR03023 129 RRVLIVGAGELGRRLAERLARNPE-------LGYRVVGFFDDRPDARTGVRGVPVLGKLDDLEELIREGEVDEVYIA 198 (451)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCC-------CCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 549999686899999999971943-------6848999983885444445799736989999999996799889995
No 368
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=77.18 E-value=5.8 Score=19.75 Aligned_cols=70 Identities=11% Similarity=0.156 Sum_probs=44.9
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC-CCCCCHHCCCHHHHHCCCCCCEEEEC
Q ss_conf 269999825667899999999989999997399659999982685200278-87710220788898448899899986
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGI-DCLRYEWFDDPLIMAGEADIDVFVEL 80 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~-~~~~~~~~~d~~~li~~~~IDvVVEl 80 (438)
.-|+.++|.|.-|..+++.+.++.. ..++++++.+-+.+..... ..+..-..++..++++..++|-|+=+
T Consensus 125 ~rrvlIIG~g~~~~~l~~~l~~~~~-------~g~~vvG~~dd~~~~~~~~~~~p~lg~~~~l~~~i~~~~ideViIa 195 (445)
T TIGR03025 125 LRRVLIVGTGELAEELAAALSRNPD-------LGYRVVGFVDDRPEDRVEVAGLPVLGKLDDLVELVRAHRVDEVIIA 195 (445)
T ss_pred CCEEEEEECCHHHHHHHHHHHHCCC-------CCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 7239999084899999999982846-------8848999977875444556788601889999999997699889996
No 369
>pfam01177 Asp_Glu_race Asp/Glu/Hydantoin racemase. This family contains aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase.
Probab=76.95 E-value=5.9 Score=19.71 Aligned_cols=12 Identities=25% Similarity=0.205 Sum_probs=6.0
Q ss_pred HHHCCCCCCEEE
Q ss_conf 984488998999
Q gi|254780900|r 67 IMAGEADIDVFV 78 (438)
Q Consensus 67 ~li~~~~IDvVV 78 (438)
+.+.+..+|+++
T Consensus 58 ~~l~~~g~d~iv 69 (212)
T pfam01177 58 RRLAKAGADAIV 69 (212)
T ss_pred HHHHHCCCCEEE
T ss_conf 999867999999
No 370
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=76.37 E-value=3.2 Score=21.55 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=19.9
Q ss_pred CCEEEEEECC-CHHHHHHHHHHHH
Q ss_conf 7269999825-6678999999999
Q gi|254780900|r 3 GVLKVGVAGL-GTVGSALIRSIQK 25 (438)
Q Consensus 3 k~ikIgiiG~-G~VG~~~~~~l~~ 25 (438)
+|+||.|+|. |.||+.++-.|.+
T Consensus 1 ~p~KV~IiGAaG~IG~~la~~la~ 24 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIAS 24 (322)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHH
T ss_conf 970999989996899999999971
No 371
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=76.24 E-value=5.3 Score=20.01 Aligned_cols=138 Identities=12% Similarity=0.089 Sum_probs=67.9
Q ss_pred CCEEEEEECCCHHHHHHH-HHHHHHHHHHHHHCCCCEEEEEEEE-CCCCCCCCCCCCCC-HHC--CC--------HHHHH
Q ss_conf 726999982566789999-9999989999997399659999982-68520027887710-220--78--------88984
Q gi|254780900|r 3 GVLKVGVAGLGTVGSALI-RSIQKREGRFKDLDQHSFVVSAISA-RDKNIDRGIDCLRY-EWF--DD--------PLIMA 69 (438)
Q Consensus 3 k~ikIgiiG~G~VG~~~~-~~l~~~~~~l~~~~g~~i~i~~i~~-r~~~k~~~~~~~~~-~~~--~d--------~~~li 69 (438)
|+++||++|-=|+|++.+ ..|...+-+.-+=.|..++.+.-.- .+...-+-+|+|+. .++ ++ ..+.+
T Consensus 2 k~i~IALvGNPN~GKSTLFN~LTG~~q~VgNwPGvTVEkk~G~~~~~~~~~~ivDLPG~YSL~~~S~e~s~dE~Var~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 73569988899878999999986899835789976474238999968946999979977869999977773089999986
Q ss_pred CCCCCCEEEECCCCCCCCHH--HHHHHHHHCCEEEEE-ECHHHHHH-HHH--HHHHHHHHCCCEEE-EECCCCCHHHHH
Q ss_conf 48899899986488885113--578888632702885-04177887-689--99987531396699-605645301318
Q gi|254780900|r 70 GEADIDVFVELIGGEDYPAY--DAVRIALMRGCHVVT-ANKALIAS-HGK--DLALLAQKNNAILN-FEAAVAGGIPII 141 (438)
Q Consensus 70 ~~~~IDvVVEliGg~~~pA~--~~i~~AL~~GkhVVT-ANKallA~-~g~--eL~~lA~~~gv~l~-~easV~ggiPii 141 (438)
.+.+.|+||.+...+ ..-+ -+..+.++-|+.||. -|..-.|+ .|. +..+|+++=|+.+- ..|.-+-|+.-+
T Consensus 82 l~~~pDvvvnVvDAt-nLeRnLyLt~QllElg~PvVvaLNM~D~A~~~Gi~ID~~~Ls~~LGvPVV~~~A~~g~Gi~eL 159 (772)
T PRK09554 82 LSGDADLLINVVDAS-NLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEAL 159 (772)
T ss_pred HCCCCCEEEEEEECC-CHHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCEECHHHHHHHHCCCEEEEEECCCCCHHHH
T ss_conf 139998999980168-754428999999974999899987799898877932899999985899899982788799999
No 372
>PRK00907 hypothetical protein; Provisional
Probab=76.15 E-value=6.2 Score=19.56 Aligned_cols=75 Identities=11% Similarity=0.076 Sum_probs=62.7
Q ss_pred HCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCE--EEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCC
Q ss_conf 446532799992488874899999988669957--8888226778776135999921048899999999862383000
Q gi|254780900|r 349 EEEKEYFIRLTIRNFEGILDKITSQMSDFNISL--RLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAI 424 (438)
Q Consensus 349 ~~~~~yYLRl~v~DkpGVLa~It~ilak~~ISI--esi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~ 424 (438)
+..+.|=|...=.-.+|.-+.|..++..|...+ +.+..+. .++++++.+-++-..++..+++++-+.|...+.|+
T Consensus 13 eFP~~FpiKvMG~a~~~~~~~i~~iv~~~~~~~~~~~i~~r~-SS~GkYisvTi~i~AtSReQlD~iYraL~~HP~Vk 89 (92)
T PRK00907 13 QFPGTFELSAMGTAERGLETELPRLLAATGVELVQERISWKH-SSSGKYVSVRIGFRAESREQYDAAHQALRDHPEVK 89 (92)
T ss_pred ECCCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHEEECC-CCCCEEEEEEEEEEECCHHHHHHHHHHHHCCCCEE
T ss_conf 778878247747686008999999999957754852567644-78982799999999788999999999872598568
No 373
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase; InterPro: IPR011548 3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators . 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterised 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate . HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase. ; GO: 0008442 3-hydroxyisobutyrate dehydrogenase activity, 0051287 NAD binding.
Probab=76.15 E-value=5.4 Score=19.97 Aligned_cols=110 Identities=21% Similarity=0.270 Sum_probs=66.2
Q ss_pred ECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEEECCCCCCCCHH
Q ss_conf 82566789999999998999999739965999998268520027887710220788898448899899986488885113
Q gi|254780900|r 10 AGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFVELIGGEDYPAY 89 (438)
Q Consensus 10 iG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVVEliGg~~~pA~ 89 (438)
||+||+|..-++-|.|. |..++ +.|.+..--+.+.-.....-..+.+.++ +.|+||=. -||-
T Consensus 2 IGLGNMGgPMA~NL~KA--------GH~v~---~FDL~p~av~~~v~aG~~~A~S~~~a~~--~Ad~vITM-----LPAg 63 (290)
T TIGR01692 2 IGLGNMGGPMAANLLKA--------GHAVR---VFDLSPKAVEELVEAGAQAAASAAEAAE--GADVVITM-----LPAG 63 (290)
T ss_pred CCCCCCCHHHHHHHHHH--------CCEEE---EEECCHHHHHHHHHCCHHCCCCHHHHHC--CCCEEEEC-----CCCC
T ss_conf 78888822799998611--------87257---7517889999999600220545798845--58868634-----8860
Q ss_pred HHHHHHHHCCEEEEEEC--HH-HH-------HHHHHHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf 57888863270288504--17-78-------87689999875313966996056453013
Q gi|254780900|r 90 DAVRIALMRGCHVVTAN--KA-LI-------ASHGKDLALLAQKNNAILNFEAAVAGGIP 139 (438)
Q Consensus 90 ~~i~~AL~~GkhVVTAN--Ka-ll-------A~~g~eL~~lA~~~gv~l~~easV~ggiP 139 (438)
.+++.-+. |-.=|.++ |. || -..-+++.++|.++|..|. .|=|-||+=
T Consensus 64 ~HV~sVY~-gd~gIL~~~~K~~LlIDcSTIDpdsAr~~A~~Aa~~G~~f~-DAPVSGG~G 121 (290)
T TIGR01692 64 KHVISVYS-GDDGILAKVAKGSLLIDCSTIDPDSARKVAELAAAHGLVFV-DAPVSGGVG 121 (290)
T ss_pred HHHHHHHH-CCHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCEE-CCCCCCCHH
T ss_conf 34899983-31334113678896332456786789999999998187210-367775356
No 374
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=76.10 E-value=2.5 Score=22.31 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=18.0
Q ss_pred EEEEEECCCHHHHHHHHHHHH
Q ss_conf 699998256678999999999
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQK 25 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~ 25 (438)
|||+++|+|.||..++-.+.+
T Consensus 1 MkI~ViGlGyVGl~~a~~la~ 21 (185)
T pfam03721 1 MRIAVIGLGYVGLPTAVCLAE 21 (185)
T ss_pred CEEEEECCCHHHHHHHHHHHH
T ss_conf 979998978748999999994
No 375
>pfam02719 Polysacc_synt_2 Polysaccharide biosynthesis protein. This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI).
Probab=75.83 E-value=4 Score=20.90 Aligned_cols=18 Identities=50% Similarity=0.674 Sum_probs=14.0
Q ss_pred EEC-CCHHHHHHHHHHHHH
Q ss_conf 982-566789999999998
Q gi|254780900|r 9 VAG-LGTVGSALIRSIQKR 26 (438)
Q Consensus 9 iiG-~G~VG~~~~~~l~~~ 26 (438)
+-| +|.+|+.+++.|.++
T Consensus 3 VTGGaGFIGS~Lv~~Ll~~ 21 (280)
T pfam02719 3 VTGGGGSIGSELCRQILKF 21 (280)
T ss_pred EECCCCHHHHHHHHHHHHC
T ss_conf 9748867999999999968
No 376
>PRK07411 hypothetical protein; Validated
Probab=75.57 E-value=6.4 Score=19.46 Aligned_cols=87 Identities=20% Similarity=0.160 Sum_probs=49.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC----CCCCCC-------CCCC---------------
Q ss_conf 69999825667899999999989999997399659999982685----200278-------8771---------------
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDK----NIDRGI-------DCLR--------------- 58 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~----~k~~~~-------~~~~--------------- 58 (438)
=+|.++|+|..|+-++.-|. ..|+. -..+.|.|. +..|.+ ..++
T Consensus 39 a~VlvvG~GGLG~p~~~yLa--------aaGvG--~i~ivD~D~ve~sNL~RQ~l~~~~~vG~~K~~~a~~~l~~lnp~~ 108 (390)
T PRK07411 39 ASVLCIGTGGLGSPLLLYLA--------AAGIG--RIGIVDFDIVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYC 108 (390)
T ss_pred CCEEEECCCHHHHHHHHHHH--------HCCCC--EEEEEECCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCC
T ss_conf 97899888723799999999--------83897--599974899462347854366620079718999999999868986
Q ss_pred ------CHH-CCCHHHHHCCCCCCEEEECCCCCCCCH--HHHHHHHHHCCEEEEEEC
Q ss_conf ------022-078889844889989998648888511--357888863270288504
Q gi|254780900|r 59 ------YEW-FDDPLIMAGEADIDVFVELIGGEDYPA--YDAVRIALMRGCHVVTAN 106 (438)
Q Consensus 59 ------~~~-~~d~~~li~~~~IDvVVEliGg~~~pA--~~~i~~AL~~GkhVVTAN 106 (438)
..+ .++..+++. +.|+||+++ |.++ |-+-..|.+.||..|.+.
T Consensus 109 ~i~~~~~~l~~~na~~li~--~~DvvvD~t---DNf~tRylindac~~~~~PlV~ga 160 (390)
T PRK07411 109 QVDLYETRLSSENALDILA--PYDVVVDGT---DNFPTRYLVNDACVLLNKPNVYGS 160 (390)
T ss_pred CCEEHHHHCCHHHHHHHHC--CCCEEEECC---CCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 4210343255524887422--886899678---888999998999999699879976
No 377
>PRK05086 malate dehydrogenase; Provisional
Probab=75.16 E-value=2.8 Score=21.98 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=17.6
Q ss_pred EEEEEECC-CHHHHHHHHHHHH
Q ss_conf 69999825-6678999999999
Q gi|254780900|r 5 LKVGVAGL-GTVGSALIRSIQK 25 (438)
Q Consensus 5 ikIgiiG~-G~VG~~~~~~l~~ 25 (438)
|||+|+|. |+||+.++-.|..
T Consensus 1 mKV~IiGA~G~VG~s~A~~l~~ 22 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKT 22 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHH
T ss_conf 9899998998699999999982
No 378
>KOG0172 consensus
Probab=75.16 E-value=6.5 Score=19.39 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=75.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC----CCCCCCC--HHCCCHHHHHC-CCCCCEEE
Q ss_conf 99998256678999999999899999973996599999826852002----7887710--22078889844-88998999
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDR----GIDCLRY--EWFDDPLIMAG-EADIDVFV 78 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~----~~~~~~~--~~~~d~~~li~-~~~IDvVV 78 (438)
+|-++|.|.|.+-+++-|.++. +++++. +.|.+...+ +++.... .+.++-..+-. -.+.|+++
T Consensus 4 ~vlllgsg~v~~p~~d~ls~~~---------dv~vtv-a~~~~~~~~~~~~~~~~~av~ldv~~~~~~L~~~v~~~D~vi 73 (445)
T KOG0172 4 GVLLLGSGFVSRPVADFLSRKK---------DVNVTV-ASRTLKDAEALVKGINIKAVSLDVADEELALRKEVKPLDLVI 73 (445)
T ss_pred CEEEECCCCCCCHHHHHHHHCC---------CCEEEE-EHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHCCCCEEE
T ss_conf 2699537531334788874167---------823898-634677899984278865067774251788986515411266
Q ss_pred ECCCCCCCCHHHHHHHHHHCCEEEEEECH---HHHH----------------------HHHH--HHHHHHHHCCCEEEEE
Q ss_conf 86488885113578888632702885041---7788----------------------7689--9998753139669960
Q gi|254780900|r 79 ELIGGEDYPAYDAVRIALMRGCHVVTANK---ALIA----------------------SHGK--DLALLAQKNNAILNFE 131 (438)
Q Consensus 79 EliGg~~~pA~~~i~~AL~~GkhVVTANK---allA----------------------~~g~--eL~~lA~~~gv~l~~e 131 (438)
-|+.- +.+.-..+.|+.+++|+||+.= ++-. .|.. +-+.+++++|-.+--=
T Consensus 74 SLlP~--t~h~lVaK~~i~~~~~~vtsSyv~pe~~~L~~~~v~AG~ti~~e~gldpGidhm~a~~ti~~vh~hgg~i~sf 151 (445)
T KOG0172 74 SLLPY--TFHPLVAKGCIITKEDSVTSSYVDPELEELEKAAVPAGSTIMNEIGLDPGIDHMPAMKTIDLVHEHGGKIKSF 151 (445)
T ss_pred EECCC--HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHCCCHHHHHHCCEEEEH
T ss_conf 40430--1338899888886403541103688898621121478855764456674444413312436788633466551
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 56453013189998764128620343331420
Q gi|254780900|r 132 AAVAGGIPIIRILKNYVEYDEINRVYGIINGT 163 (438)
Q Consensus 132 asV~ggiPii~~l~~~l~~~~i~~i~GIlnGT 163 (438)
-+-|||+|...--.+.|..-==++..|+++|-
T Consensus 152 ~sycGglpape~s~nplgykfsws~~gvl~a~ 183 (445)
T KOG0172 152 KSYCGGLPAPERSNNPLGYKFSWSPLGVLLAL 183 (445)
T ss_pred HHHCCCCCCHHHCCCCCCEEECCCHHHHHHHC
T ss_conf 54327866742378976505514654566651
No 379
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=74.96 E-value=6.6 Score=19.35 Aligned_cols=48 Identities=21% Similarity=0.341 Sum_probs=33.6
Q ss_pred CEEEEC--CCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 899986--4888851135788886327028850417788768999987531396699
Q gi|254780900|r 75 DVFVEL--IGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILN 129 (438)
Q Consensus 75 DvVVEl--iGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~ 129 (438)
|+|+-. -|.++ ...+..+.|.++|.+|+.- . .|-.|.++|+++|..+.
T Consensus 45 ~lvi~~S~SGnTe-Etl~~~~~a~~~ga~vi~i-----t-sGG~L~~~a~~~~~p~v 94 (119)
T cd05017 45 TLVIAVSYSGNTE-ETLSAVEQAKERGAKIVAI-----T-SGGKLLEMAREHGVPVI 94 (119)
T ss_pred CEEEEECCCCCCH-HHHHHHHHHHHCCCEEEEE-----C-CCCHHHHHHHHCCCCEE
T ss_conf 7899992897968-9999999999859909998-----4-99559999988799989
No 380
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=74.38 E-value=6.8 Score=19.26 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.5
Q ss_pred EEEEECCHHHHHHHHHHHHCCCCC
Q ss_conf 992104889999999986238300
Q gi|254780900|r 400 MITHKVSGKLIRDAIECFNGKSDA 423 (438)
Q Consensus 400 iiTh~~~e~~i~~ai~~i~~l~~v 423 (438)
+|||..+-.++.+|++.+++-+..
T Consensus 316 lIt~~~~le~~~eA~~~l~~~~~~ 339 (347)
T PRK10309 316 LIAHRGSFESFAQAVRDLAGNPMP 339 (347)
T ss_pred EEEEEEEHHHHHHHHHHHHCCCCC
T ss_conf 454498499999999999819991
No 381
>KOG4777 consensus
Probab=74.28 E-value=6.5 Score=19.39 Aligned_cols=138 Identities=18% Similarity=0.163 Sum_probs=72.4
Q ss_pred EEE-EEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHH---CCCHHH-------HHCCCC
Q ss_conf 999-982-56678999999999899999973996599999826852002788771022---078889-------844889
Q gi|254780900|r 6 KVG-VAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEW---FDDPLI-------MAGEAD 73 (438)
Q Consensus 6 kIg-iiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~---~~d~~~-------li~~~~ 73 (438)
++| ++| .|+||+-++.+|..+.. ..+.+.+.+.|+..|.-.++.++.+. -....+ --.-.+
T Consensus 5 k~a~vlGaTGaVGQrFi~lLsdhP~-------f~ikvLgAS~RSAGK~ya~a~~wkqt~~lp~~~~e~~V~ec~~~~F~e 77 (361)
T KOG4777 5 KSAPVLGATGAVGQRFISLLSDHPY-------FSIKVLGASKRSAGKRYAFAGNWKQTDLLPESAHEYTVEECTADSFNE 77 (361)
T ss_pred CCCCEEECCCHHHHHHHHHHCCCCC-------CEEEEECCCCCCCCCCEEECCCCHHCCCCCCHHHHHHHHHCCHHHCCC
T ss_conf 1355210343147789998616985-------134230133314698157604411202465034341375558402366
Q ss_pred CCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH-----HHHHHH
Q ss_conf 989998648888511357888863270288504177887689999875313966996056453013189-----998764
Q gi|254780900|r 74 IDVFVELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIR-----ILKNYV 148 (438)
Q Consensus 74 IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~-----~l~~~l 148 (438)
+|++.--.++ + .|.++-+.+.++|.-+|.--| . ++.|-.|-=-+|.++ .++..+
T Consensus 78 cDIvfsglda-d-~ageiek~f~eag~iiVsNak-----n--------------yRre~~VPLvvP~VNpehld~ik~~~ 136 (361)
T KOG4777 78 CDIVFSGLDA-D-IAGEIEKLFAEAGTIIVSNAK-----N--------------YRREDGVPLVVPEVNPEHLDGIKVGL 136 (361)
T ss_pred CCEEEECCCC-H-HHHHHHHHHHHCCEEEEECCH-----H--------------CCCCCCCCEEECCCCHHHHHHHEECC
T ss_conf 5589852782-3-665654778866869986714-----3--------------02579974573345877842530222
Q ss_pred HCCCCEEEEEEECCCHHHHEEHH
Q ss_conf 12862034333142000000001
Q gi|254780900|r 149 EYDEINRVYGIINGTCNYILSHM 171 (438)
Q Consensus 149 ~~~~i~~i~GIlnGT~nyIL~~m 171 (438)
..++..+=.=|-|.-|+-+.--|
T Consensus 137 ~~~k~~~G~iI~nsNCSTa~~v~ 159 (361)
T KOG4777 137 DTGKMGKGAIIANSNCSTAICVM 159 (361)
T ss_pred CCCCCCCCEEEECCCCCEEEEEE
T ss_conf 25888995289669887036876
No 382
>KOG0069 consensus
Probab=74.24 E-value=3 Score=21.76 Aligned_cols=11 Identities=18% Similarity=0.066 Sum_probs=5.0
Q ss_pred HHHHHCCCEEE
Q ss_conf 87531396699
Q gi|254780900|r 119 LLAQKNNAILN 129 (438)
Q Consensus 119 ~lA~~~gv~l~ 129 (438)
++|+++|..+.
T Consensus 101 ~a~~krgI~V~ 111 (336)
T KOG0069 101 EAARKRGIRVA 111 (336)
T ss_pred HHHHHCCCEEE
T ss_conf 98986596686
No 383
>pfam00389 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain. This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain.
Probab=74.10 E-value=6.9 Score=19.21 Aligned_cols=51 Identities=8% Similarity=0.065 Sum_probs=20.0
Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 8998999864888851135788886327028850417788768999987531396699
Q gi|254780900|r 72 ADIDVFVELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILN 129 (438)
Q Consensus 72 ~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~ 129 (438)
++.|+++ +.+.+..-.+++.+ +.+=|-|.++.-+. .+ -+ .+.|+++|+.+.
T Consensus 38 ~~~d~li--~~~~~~i~~e~l~~-~~~LK~I~~~~~G~--D~-ID-~~~a~~~gI~V~ 88 (313)
T pfam00389 38 KDADALI--VRSTTPVTAEVLEA-APGLKVIARRGVGV--DN-ID-LDAATERGILVT 88 (313)
T ss_pred CCCCEEE--ECCCCCCCHHHHHC-CCCCEEEEECCCCC--CH-HH-HHHHHHCCCEEE
T ss_conf 8982999--85899768999944-99984999888445--53-05-999997999999
No 384
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=74.05 E-value=2.7 Score=22.06 Aligned_cols=65 Identities=25% Similarity=0.243 Sum_probs=34.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC--CCC---------CCCH-HCCCHHHHHCCCC
Q ss_conf 999982566789999999998999999739965999998268520027--887---------7102-2078889844889
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRG--IDC---------LRYE-WFDDPLIMAGEAD 73 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~--~~~---------~~~~-~~~d~~~li~~~~ 73 (438)
||+|+|+|.||+.++-.|..+ +.-=++. ..|.+..+.++ .++ +... ...|+.++ .+
T Consensus 1 KI~IIGaG~VG~~~A~~l~~~--------~~~~elv-L~Di~~~~a~g~a~Dl~h~~~~~~~~~~~~~~~~y~~~---~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL--------GLFSEIV-LIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDC---AD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHC--------CCCCEEE-EEECCCCCCHHHHHHHHHHCCCCCCCCEEECCCCHHHH---CC
T ss_conf 989999698999999999856--------9988799-99288982379999876120358998658667998994---69
Q ss_pred CCEEEECCC
Q ss_conf 989998648
Q gi|254780900|r 74 IDVFVELIG 82 (438)
Q Consensus 74 IDvVVEliG 82 (438)
.|+||=.-|
T Consensus 69 aDiVVitaG 77 (307)
T cd05290 69 ADIIVITAG 77 (307)
T ss_pred CCEEEECCC
T ss_conf 999998677
No 385
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=73.64 E-value=7.1 Score=19.14 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEEC--CHHHHHHHHHHHHCCCCCC
Q ss_conf 8874899999988669957888822677877613599992104--8899999999862383000
Q gi|254780900|r 363 FEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKV--SGKLIRDAIECFNGKSDAI 424 (438)
Q Consensus 363 kpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~--~e~~i~~ai~~i~~l~~v~ 424 (438)
..|=|++|=.+|.++++|++-+.-- .+.+-+.-|.. ..+.+++++++|+++..|.
T Consensus 14 ahGFLa~vF~if~~~~~sVDlIsTS-------EV~VSmti~~~~~~~~~l~~~~~eL~~~g~V~ 70 (73)
T cd04934 14 SHGFLARIFAILDKYRLSVDLISTS-------EVHVSMALHMENAEDTNLDAAVKDLQKLGTVD 70 (73)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEC-------EEEEEEEEECCCCCHHHHHHHHHHHHHCCEEE
T ss_conf 5178999999998749953899812-------37999998337875555999999998553178
No 386
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=73.17 E-value=7.3 Score=19.06 Aligned_cols=81 Identities=17% Similarity=0.154 Sum_probs=38.8
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC--CCCCCCCCCHHCCCHHHHHCCCCCCEEEECCC
Q ss_conf 6999982566789999999998999999739965999998268520--02788771022078889844889989998648
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI--DRGIDCLRYEWFDDPLIMAGEADIDVFVELIG 82 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k--~~~~~~~~~~~~~d~~~li~~~~IDvVVEliG 82 (438)
-+|+|+|||+=|.+.+..|+. .|.++ +++ -|..+. ++... +. .-..++.+.+.. .|+|.-|+.
T Consensus 19 K~iaIIGYGsQG~ahalNlRD--------SGlnV-iiG--lr~g~~s~~kA~~-dG-f~V~~v~ea~k~--ADvim~L~P 83 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRD--------SGLNV-IIG--LRKGSSSWKKAKE-DG-FKVYTVEEAAKR--ADVVMILLP 83 (338)
T ss_pred CEEEEEECCHHHHHHHHHHHH--------CCCCE-EEE--ECCCCHHHHHHHH-CC-CEEECHHHHHHC--CCEEEEECC
T ss_conf 869999027087888742242--------48747-998--5688724899996-69-775139998522--799998186
Q ss_pred CCCCCHHHHHH----HHHHCCEEE
Q ss_conf 88851135788----886327028
Q gi|254780900|r 83 GEDYPAYDAVR----IALMRGCHV 102 (438)
Q Consensus 83 g~~~pA~~~i~----~AL~~GkhV 102 (438)
|....++.+ --|+.|+-.
T Consensus 84 --De~q~~vy~~~I~p~Lk~G~aL 105 (338)
T COG0059 84 --DEQQKEVYEKEIAPNLKEGAAL 105 (338)
T ss_pred --HHHHHHHHHHHHHHHHCCCCEE
T ss_conf --5467899998743452278667
No 387
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=73.11 E-value=7.3 Score=19.05 Aligned_cols=27 Identities=7% Similarity=-0.102 Sum_probs=12.4
Q ss_pred CCCCHHCCCHHHHHCCCCCCEEEECCC
Q ss_conf 771022078889844889989998648
Q gi|254780900|r 56 CLRYEWFDDPLIMAGEADIDVFVELIG 82 (438)
Q Consensus 56 ~~~~~~~~d~~~li~~~~IDvVVEliG 82 (438)
++...+.....+.+.+.+-.+||-+-.
T Consensus 41 ip~~~le~~~~~~~pdkd~~ivvyC~s 67 (379)
T PRK08762 41 IAQGFLELQPATHLPDHDREIVLICQS 67 (379)
T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 882445541330188999859999999
No 388
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=73.08 E-value=3.6 Score=21.19 Aligned_cols=185 Identities=16% Similarity=0.177 Sum_probs=87.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC-C--------------CCC---C---------CC
Q ss_conf 6999982566789999999998999999739965999998268520-0--------------278---8---------77
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI-D--------------RGI---D---------CL 57 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k-~--------------~~~---~---------~~ 57 (438)
=+|+++|.|++|++++..+. ..|.++.+. +.+.+. + +.. . ..
T Consensus 4 k~VaViGaG~MG~gIA~~~a--------~~G~~V~l~---D~~~~~l~~a~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~ 72 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFA--------RTGYDVTIV---DVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMA 72 (291)
T ss_pred CEEEEECCCHHHHHHHHHHH--------HCCCCEEEE---ECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 88999887688999999999--------589988999---8998999999999997189999998668999999999983
Q ss_pred CCHHCCCHHHHHCCCCCCEEEECCCCCCCCH-HHHHHHHHHC--CEE-EEEECHHHHHHHHHHHHHHHHHC----CCEEE
Q ss_conf 1022078889844889989998648888511-3578888632--702-88504177887689999875313----96699
Q gi|254780900|r 58 RYEWFDDPLIMAGEADIDVFVELIGGEDYPA-YDAVRIALMR--GCH-VVTANKALIASHGKDLALLAQKN----NAILN 129 (438)
Q Consensus 58 ~~~~~~d~~~li~~~~IDvVVEliGg~~~pA-~~~i~~AL~~--Gkh-VVTANKallA~~g~eL~~lA~~~----gv~l~ 129 (438)
....++|+..+ .+.|+|+|++ .|... +.-+.+.|+. ..+ ++..|-.-+. -.+|.+..+.. |..|+
T Consensus 73 ~i~~~~~~~~~---~~aDlViEav--~E~l~iK~~lf~~l~~~~~~~~IlaSNTSsl~--is~ia~~~~~p~R~ig~Hff 145 (291)
T PRK06035 73 RIRTSTSYESL---SDADFIVEAV--PEKLDLKRKVFAELERNVSPETIIASNTSGIM--IAEIATALERKDRFIGMHWF 145 (291)
T ss_pred CCCCCCCHHHH---CCCCEEEECC--CCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC--HHHHHHHCCCCHHEEEECCC
T ss_conf 66435888897---6599999888--38899999999999965899837986088778--69999765994223641126
Q ss_pred EECCCCCHHH----------HHHHHHHHHHCCCCEEEEEEECCCHHHHEEHHH-----------CCCCCHHHHHHHHHHC
Q ss_conf 6056453013----------189998764128620343331420000000010-----------0687788998878761
Q gi|254780900|r 130 FEAAVAGGIP----------IIRILKNYVEYDEINRVYGIINGTCNYILSHMN-----------NLGLSFQDCLEEARRQ 188 (438)
Q Consensus 130 ~easV~ggiP----------ii~~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~-----------~~g~~f~~al~~Aq~l 188 (438)
.-+.++--+= ++....+. ..++-+.-=+++=+-.||.++|. ++|..--+-+-.+-+.
T Consensus 146 nP~~~~~LVEIv~g~~Ts~~~~~~~~~~--~~~lgk~pV~v~d~pGFi~NRl~~~~~~Ea~~lv~eGvas~edID~~~~~ 223 (291)
T PRK06035 146 NPAPVMKLIEVVRAALTSEETFNTTVEL--SKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKL 223 (291)
T ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHHH--HHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 8701163366538999989999999999--99759848996587742499889999999999998399999999998376
Q ss_pred CCCC-CCC--CCCCCHHHHHHHHH
Q ss_conf 7615-653--22321178999999
Q gi|254780900|r 189 GYAE-GDA--TFDINGVDSSHKIA 209 (438)
Q Consensus 189 GyaE-~DP--~~Di~G~Daa~Kl~ 209 (438)
||-= --| ..|+-|+|....+.
T Consensus 224 ~~G~~~GPf~l~D~iGlD~~~~v~ 247 (291)
T PRK06035 224 AFGFPMGPFELMDIIGIDTVYHIA 247 (291)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 069810799988775199999999
No 389
>TIGR01663 PNK-3'Pase polynucleotide kinase 3'-phosphatase; InterPro: IPR006550 These sequences represent the metazoan 5'-polynucleotide-kinase-3'-phosphatase, PNKP, which is believed to be involved in repair of oxidative DNA damage. Removal of 3'-phosphates is essential for the further processing of the break by DNA polymerases , . The central phosphatase domain is a member of the IIIA subfamily (IPR006549 from INTERPRO) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is replaced by a conserved arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Very close relatives of this domain are also found separate from the N- and C-terminal domains seen here, as in the 3'-phosphatase found in plants. The larger family of these domains is described by IPR006551 from INTERPRO. Outside of the phosphatase domain is a P-loop ATP-binding motif associated with the kinase activity. The entry for the mouse homolog appears to be missing a large piece of sequence corresponding to the first conserved catalytic motif of the phosphatase domain as well as the conserved threonine of the second motif. Either this is a sequencing artifact or this may represent a pseudo- or non-functional gene. .
Probab=72.50 E-value=6.5 Score=19.41 Aligned_cols=47 Identities=28% Similarity=0.287 Sum_probs=38.9
Q ss_pred HHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCC---EEEEECCCCC
Q ss_conf 5788886327028850417788768999987531396---6996056453
Q gi|254780900|r 90 DAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNA---ILNFEAAVAG 136 (438)
Q Consensus 90 ~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv---~l~~easV~g 136 (438)
+-++.+|+.|+.||-=|--+-|..-....++|+++++ +|.|.++|+-
T Consensus 411 T~C~~~L~~G~~~~~DNTN~DAASR~~y~Q~A~~~~~PCRCl~~~~~~~Q 460 (526)
T TIGR01663 411 TACKRALDSGKRVVVDNTNVDAASRKKYLQLAREKGVPCRCLLFTVTLEQ 460 (526)
T ss_pred HHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHH
T ss_conf 99999985698899856885776778999878646896177655061678
No 390
>pfam04359 DUF493 Protein of unknown function (DUF493).
Probab=72.33 E-value=7.6 Score=18.93 Aligned_cols=76 Identities=7% Similarity=0.003 Sum_probs=63.4
Q ss_pred HHCCCCEEEEEEECCCCCHHHHHHHHHHHCC--CCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCC
Q ss_conf 3446532799992488874899999988669--9578888226778776135999921048899999999862383000
Q gi|254780900|r 348 YEEEKEYFIRLTIRNFEGILDKITSQMSDFN--ISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAI 424 (438)
Q Consensus 348 ~~~~~~yYLRl~v~DkpGVLa~It~ilak~~--ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~ 424 (438)
-+..+.|=+++.-.+.++-...|-.++.+|. ++-+.+.++. ..++++..+-+.-...++.++++.-+.|.+.+.|+
T Consensus 10 ieFPc~~piKviG~~~~~f~~~V~~iv~~h~~~~~~~~v~~r~-Ss~GkY~Svtv~i~a~s~~ql~~iy~~L~~~~~Vk 87 (90)
T pfam04359 10 LEFPCDFPFKVMGLAGDELVDAVVEVVQRHAPGFDDYTPTVKP-SSKGKYVSVSVTITATSEEQLEALYQELSAIERVK 87 (90)
T ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEE-CCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCEE
T ss_conf 2078877079997087168999999999977999833237864-68984899999999889999999999983199878
No 391
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=72.18 E-value=7.6 Score=18.91 Aligned_cols=61 Identities=21% Similarity=0.248 Sum_probs=34.9
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC--CCC--------CCHH--CCCHHHHHCCCCC
Q ss_conf 999825667899999999989999997399659999982685200278--877--------1022--0788898448899
Q gi|254780900|r 7 VGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGI--DCL--------RYEW--FDDPLIMAGEADI 74 (438)
Q Consensus 7 IgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~--~~~--------~~~~--~~d~~~li~~~~I 74 (438)
|+|+|+|.||+.++-.|..+ +.. ++ ...|++.++.++. ++. ...+ ++|+.++ .+.
T Consensus 1 V~IIGaG~VG~~~a~~l~~~--------~~~-el-~L~D~~~~~a~g~a~DL~~~~~~~~~~~~v~~~~d~~~~---~da 67 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK--------ELG-DV-VLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDI---AGS 67 (300)
T ss_pred CEEECCCHHHHHHHHHHHHC--------CCC-EE-EEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHH---CCC
T ss_conf 98989688899999999857--------996-79-998099980057988776132015898589947887994---799
Q ss_pred CEEEEC
Q ss_conf 899986
Q gi|254780900|r 75 DVFVEL 80 (438)
Q Consensus 75 DvVVEl 80 (438)
|+||=.
T Consensus 68 DvvVit 73 (300)
T cd01339 68 DVVVIT 73 (300)
T ss_pred CEEEEE
T ss_conf 899990
No 392
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=71.63 E-value=4.3 Score=20.67 Aligned_cols=22 Identities=18% Similarity=0.367 Sum_probs=18.6
Q ss_pred CEEEEEECCCHHHHHHHHHHHH
Q ss_conf 2699998256678999999999
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQK 25 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~ 25 (438)
.|||+|+|.|-||+-++-.|.+
T Consensus 2 ~MkI~IiGaGAiG~~~a~~L~~ 23 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLAR 23 (305)
T ss_pred CCEEEEECCCHHHHHHHHHHHH
T ss_conf 9889998823999999999984
No 393
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase; InterPro: IPR006398 These sequences represent 2-hydroxy-3-oxopropionate reductase (1.1.1.60 from EC), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism , .; GO: 0008679 2-hydroxy-3-oxopropionate reductase activity, 0046487 glyoxylate metabolic process.
Probab=71.48 E-value=7.9 Score=18.80 Aligned_cols=116 Identities=22% Similarity=0.315 Sum_probs=70.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEEECCCCCC
Q ss_conf 99998256678999999999899999973996599999826852002788771022078889844889989998648888
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFVELIGGED 85 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVVEliGg~~ 85 (438)
|||-+|+|-+|+=..+-|. +.|..+. +.+++.++-..+-.-.........++.++ .||||=.+ ++
T Consensus 1 KvgfIGLGIMG~PMs~NL~--------kAGyql~---v~t~~~e~~d~l~aaGa~~a~ta~~~~e~--~Dvi~~Mv--P~ 65 (291)
T TIGR01505 1 KVGFIGLGIMGKPMSKNLL--------KAGYQLV---VATLEQEVLDELLAAGAESAETAKEVVED--ADVIVTMV--PD 65 (291)
T ss_pred CEEEEECCCCCCHHHHHHH--------HCCCEEE---EEECCCHHHHHHHHCCCHHHHHHHHHHHH--CCEEEEEC--CC
T ss_conf 9045635877865789997--------5494688---83077048999986173228999999974--89799843--87
Q ss_pred CCHHH-------HHHHHHHCCEEEEEEC-HHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf 51135-------7888863270288504-177887689999875313966996056453013
Q gi|254780900|r 86 YPAYD-------AVRIALMRGCHVVTAN-KALIASHGKDLALLAQKNNAILNFEAAVAGGIP 139 (438)
Q Consensus 86 ~pA~~-------~i~~AL~~GkhVVTAN-KallA~~g~eL~~lA~~~gv~l~~easV~ggiP 139 (438)
.|.-+ =|.++=+.|+-.|=.. =+|++. .+|.+.++++|..++ .|=|-||=|
T Consensus 66 sPqVeeva~GenGi~e~ak~G~~lvDMSSI~P~~s--~~~a~a~k~kGid~L-DAPVSGGE~ 124 (291)
T TIGR01505 66 SPQVEEVAFGENGILEAAKKGKVLVDMSSIAPLES--KELAKAVKEKGIDVL-DAPVSGGEI 124 (291)
T ss_pred CCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHH--HHHHHHHHHCCCCEE-ECCCCCCCC
T ss_conf 69701565568752125688877887056782668--999999997288452-077789871
No 394
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=70.78 E-value=8.2 Score=18.70 Aligned_cols=86 Identities=20% Similarity=0.157 Sum_probs=45.7
Q ss_pred CCEEEEEECCCHHHH-HHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC-CCCCCCCCHHC--CCHHHHHCCCCCCEEE
Q ss_conf 726999982566789-9999999989999997399659999982685200-27887710220--7888984488998999
Q gi|254780900|r 3 GVLKVGVAGLGTVGS-ALIRSIQKREGRFKDLDQHSFVVSAISARDKNID-RGIDCLRYEWF--DDPLIMAGEADIDVFV 78 (438)
Q Consensus 3 k~ikIgiiG~G~VG~-~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~-~~~~~~~~~~~--~d~~~li~~~~IDvVV 78 (438)
++-||-++|.|..|. ++++.|.+ .|.. | ..+|+..... +.....+..++ .++. .+ .+.|+||
T Consensus 7 ~~k~ih~iGigG~GmsalA~~l~~--------~G~~--V-~gsD~~~~~~~~~L~~~Gi~v~~g~~~~-~l--~~~d~vV 72 (459)
T PRK00421 7 RIKRIHFVGIGGIGMSGLAEVLLN--------LGYK--V-SGSDLKESAVTQRLLELGAIIFIGHDAE-NI--KGADVVV 72 (459)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHH--------CCCE--E-EEECCCCCHHHHHHHHCCCEEECCCCHH-HC--CCCCEEE
T ss_conf 678899998668889999999996--------8993--9-9988989978999997879997798979-87--9999999
Q ss_pred ECCCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 86488885113578888632702885
Q gi|254780900|r 79 ELIGGEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 79 EliGg~~~pA~~~i~~AL~~GkhVVT 104 (438)
=- .++. +....+.+|.++|..|++
T Consensus 73 ~S-p~I~-~~~p~~~~a~~~gi~v~~ 96 (459)
T PRK00421 73 VS-SAIK-PDNPELVAARELGIPVVR 96 (459)
T ss_pred EC-CCCC-CCCHHHHHHHHCCCCEEE
T ss_conf 89-9859-989999999987997988
No 395
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=69.69 E-value=8.6 Score=18.54 Aligned_cols=140 Identities=16% Similarity=0.218 Sum_probs=71.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEEECCCCC
Q ss_conf 69999825667899999999989999997399659999982685200278877102207888984488998999864888
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFVELIGGE 84 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVVEliGg~ 84 (438)
||+.++||-+||..-++.|.+ ...+|.+|.... +++ ....|++...++....+|-|+--. ..
T Consensus 1 MkavvfaYh~iG~~~L~aLle----------aG~eV~aVvThp-D~P-----gek~~~~sVk~~A~e~gIPV~qP~--~i 62 (660)
T PRK08125 1 MKAVVFAYHDIGCVGIEALLE----------AGYEIAAVFTHT-DNP-----GENTFFGSVARLAAELGIPVYAPE--DV 62 (660)
T ss_pred CEEEEEEECHHHHHHHHHHHH----------CCCCEEEEECCC-CCC-----CCCCCCCCHHHHHHHCCCCEECCC--CC
T ss_conf 938999602676999999997----------899169998679-999-----877688849999997499676478--89
Q ss_pred CCCH-HHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 8511-3578888632702885041778876899998753139669960564----5301318999876412862034333
Q gi|254780900|r 85 DYPA-YDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAV----AGGIPIIRILKNYVEYDEINRVYGI 159 (438)
Q Consensus 85 ~~pA-~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV----~ggiPii~~l~~~l~~~~i~~i~GI 159 (438)
..|. .+.+ ++|+.-.-||.+=-..+ .+++.++++-. .+.+-+|- -|+-||--.+-+ |++-+.+
T Consensus 63 ~~pe~ie~L-~~l~PDlivv~aYgqIL---p~~IL~iP~~G--~iNlH~SLLPkYRGrAPInWAIIn---GEkeTGV--- 130 (660)
T PRK08125 63 NHPLWVERI-AELAPDIIFSFYYRNLL---SDEILQLAPAG--AFNLHGSLLPKYRGRAPLNWVLVN---GETETGV--- 130 (660)
T ss_pred CCHHHHHHH-HHCCCCEEEEEHHHHHC---CHHHHHCCCCC--EEECCCCCCCCCCCCCHHHHHHHC---CCCCEEE---
T ss_conf 988999999-84499999997474458---99998257767--575165437475586548899975---9972347---
Q ss_pred ECCCHHHHEEHHHCCCCCHHHHH
Q ss_conf 14200000000100687788998
Q gi|254780900|r 160 INGTCNYILSHMNNLGLSFQDCL 182 (438)
Q Consensus 160 lnGT~nyIL~~m~~~g~~f~~al 182 (438)
| +-+|. +|++=-+.+
T Consensus 131 ----T---i~~Md-eglDtGdII 145 (660)
T PRK08125 131 ----T---LHRMV-KRADAGAIV 145 (660)
T ss_pred ----E---EEEEC-CCCCCCCEE
T ss_conf ----9---99966-899877731
No 396
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=69.63 E-value=8.7 Score=18.53 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHH-HHHHHHHHCCCCCCCCCHH
Q ss_conf 6877889988787617615653-2232117899999-9999998188555310001
Q gi|254780900|r 174 LGLSFQDCLEEARRQGYAEGDA-TFDINGVDSSHKI-AILSAIAFGIDTSVEGVYC 227 (438)
Q Consensus 174 ~g~~f~~al~~Aq~lGyaE~DP-~~Di~G~Daa~Kl-~ILa~~~~g~~~~~~~v~~ 227 (438)
...+++|.. ..+ .+.-++|+ -+=|=|.-..|=+ =.|.|.+|. .+.++.+|.
T Consensus 196 GQ~t~~~l~-~y~-~~~~~~~tk~fgviG~PI~HS~SP~lHN~~f~-~~gl~~~Y~ 248 (477)
T PRK09310 196 GQLSLEHLL-FYN-YANLSAQSHIYGLIGDPVDRSISHLSHNPLFS-QLSLNCPYI 248 (477)
T ss_pred CCCCHHHHH-HHH-HCCCCCCCCEEEEECCCHHHCCCHHHHHHHHH-HCCCCCEEE
T ss_conf 877799999-877-60568567489998176231338999999999-779996778
No 397
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=69.45 E-value=3.4 Score=21.40 Aligned_cols=87 Identities=21% Similarity=0.243 Sum_probs=42.3
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCC-HHC---CCHHHH--HCCCCCCEEEEC
Q ss_conf 99982566789999999998999999739965999998268520027887710-220---788898--448899899986
Q gi|254780900|r 7 VGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRY-EWF---DDPLIM--AGEADIDVFVEL 80 (438)
Q Consensus 7 IgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~-~~~---~d~~~l--i~~~~IDvVVEl 80 (438)
|-|+|+|.+|+.+++.|.++ + +++ +.+++..+-+....... .++ +|...+ ..-.+.|.+|=+
T Consensus 1 viI~G~g~~G~~la~~L~~~--------~---~v~-vId~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vi~~ 68 (115)
T pfam02254 1 IIIIGYGRVGRSLAEELREG--------G---PVV-VIDKDPERVEELREEGVPVVVGDATDEEVLEEAGIEDADAVVAA 68 (115)
T ss_pred CEEECCCHHHHHHHHHHHHC--------C---CEE-EEECCHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCCCEEEEE
T ss_conf 99987888999999999808--------9---999-99998799877886698699995688667876192028799996
Q ss_pred CCCCCCCHHHHHHHHHH--CCEEEE-EEC
Q ss_conf 48888511357888863--270288-504
Q gi|254780900|r 81 IGGEDYPAYDAVRIALM--RGCHVV-TAN 106 (438)
Q Consensus 81 iGg~~~pA~~~i~~AL~--~GkhVV-TAN 106 (438)
++.. ......+..+-+ ..++++ .++
T Consensus 69 ~~~d-~~n~~~~~~~r~~~~~~~iiar~~ 96 (115)
T pfam02254 69 TGDD-EANILIVLLARELNPAKKIIARAN 96 (115)
T ss_pred CCCH-HHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 2984-999999999999789980999987
No 398
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=69.30 E-value=8.8 Score=18.48 Aligned_cols=100 Identities=19% Similarity=0.103 Sum_probs=51.0
Q ss_pred EEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEEECCCC
Q ss_conf 6999982-566789999999998999999739965999998268520027887710220788898448899899986488
Q gi|254780900|r 5 LKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFVELIGG 83 (438)
Q Consensus 5 ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVVEliGg 83 (438)
|||-|+| -|.+|+.+.+.+... + + +..+...+... ..++. -.+...+++.+...|+||.+.+
T Consensus 1 MkILvtGa~GqLG~~l~~~l~~~--------~-~--~~~~~~~~~~~--~~Dit---~~~~v~~~~~~~~Pd~IIN~aA- 63 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPL--------G-N--LIALDVHSTDY--CGDFS---NPEGVAETVRKIRPDVIVNAAA- 63 (299)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--------C-C--EEEEECCCCCC--CCCCC---CHHHHHHHHHHCCCCEEEECHH-
T ss_conf 97999899997899999986650--------9-8--89985263001--36789---9999999999659999998831-
Q ss_pred CCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 88511357888863270288504177887689999875313966996
Q gi|254780900|r 84 EDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNF 130 (438)
Q Consensus 84 ~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~ 130 (438)
++-+-.|=+.-..--..| +..-..|.+++++.|..|.|
T Consensus 64 -----~T~VD~~E~~~~~a~~vN----~~~~~~La~~~~~~~~~lIh 101 (299)
T PRK09987 64 -----HTAVDKAESEPEFAQLLN----ATSVEAIAKAANEVGAWVVH 101 (299)
T ss_pred -----HCCHHHHHCCHHHHHHHH----HHHHHHHHHHHHHCCCEEEE
T ss_conf -----016366524899999988----89999999999973985999
No 399
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=69.24 E-value=8.8 Score=18.47 Aligned_cols=240 Identities=14% Similarity=0.137 Sum_probs=113.8
Q ss_pred CCCEEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC----CCCCCCCCCHH----CCCH---HHHH
Q ss_conf 8726999982-566789999999998999999739965999998268520----02788771022----0788---8984
Q gi|254780900|r 2 AGVLKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI----DRGIDCLRYEW----FDDP---LIMA 69 (438)
Q Consensus 2 sk~ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k----~~~~~~~~~~~----~~d~---~~li 69 (438)
-+-=+|-+-| +|.+|+.++++|.++ +. ....-+.+++..+ .+.+..+...+ ..|. ..++
T Consensus 2 ~~~K~ILVTGGaGfIGS~lv~~Ll~~-------~~--~~~iii~~~de~~~~~l~~~~~~~~i~f~~gDIrD~~~l~~~~ 72 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLEN-------YN--PKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRAL 72 (324)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC-------CC--CCEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
T ss_conf 99399999079779999999999972-------99--8289996686403288985168987599967777889999763
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCE-EEEECCCCCHHHH-----HHH
Q ss_conf 4889989998648888511357888863270288504177887689999875313966-9960564530131-----899
Q gi|254780900|r 70 GEADIDVFVELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAI-LNFEAAVAGGIPI-----IRI 143 (438)
Q Consensus 70 ~~~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~-l~~easV~ggiPi-----i~~ 143 (438)
.++|+|+-+ .|+.++..+..+=..-+-.| ..--.-+.++|.++|+. +-|-.|=-+--|+ =+.
T Consensus 73 --~~vD~VfHa------AA~khVp~se~nP~e~i~tN----V~Gt~nlleaa~~~~Vkk~V~iSTDka~~P~n~yGasK~ 140 (324)
T TIGR03589 73 --RGVDYVVHA------AALKQVPAAEYNPFECIRTN----INGAQNVIDAAIDNGVKRVVALSTDKAANPINLYGATKL 140 (324)
T ss_pred --CCCCEEEEC------CCCCCCCHHHHCHHHHHHHH----HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHH
T ss_conf --488899994------62776726776989999999----799999999988555431786226888899674312367
Q ss_pred HHHHH--HCCCCEEEEEEECCCHHHHEEHH----HCCCCC---HHHHHHHH-HHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 98764--12862034333142000000001----006877---88998878-7617615653223211789999999999
Q gi|254780900|r 144 LKNYV--EYDEINRVYGIINGTCNYILSHM----NNLGLS---FQDCLEEA-RRQGYAEGDATFDINGVDSSHKIAILSA 213 (438)
Q Consensus 144 l~~~l--~~~~i~~i~GIlnGT~nyIL~~m----~~~g~~---f~~al~~A-q~lGyaE~DP~~Di~G~Daa~Kl~ILa~ 213 (438)
+-+-| +.+....-. .+.|.-.+. -..|.- |.+.+++- ..+-++.++-|-|.-=.|-|.++.+.|-
T Consensus 141 ~~E~l~~~~~~~~~~~-----~~~~~~vRygNV~gsrgSViP~F~~qi~~g~~~~~itd~~mtRf~mtv~dav~lV~~a~ 215 (324)
T TIGR03589 141 ASDKLFVAANNISGSK-----GTRFSVVRYGNVVGSRGSVVPFFKSLKEEGVTELPITDPRMTRFWITLEQGVNFVLKSL 215 (324)
T ss_pred HHHHHHHHHHHHHCCC-----CCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHH
T ss_conf 6799999999850788-----86378863327518886639999999983999744499980799888999999999999
Q ss_pred HHHCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCC
Q ss_conf 9818855531000122320476740347871985874101331367835699998641677300
Q gi|254780900|r 214 IAFGIDTSVEGVYCEGISNITLEDIRGAADFGYCIKFLAMARRKGKGIIRYVYPVLLKYDSVMA 277 (438)
Q Consensus 214 ~~~g~~~~~~~v~~~gI~~i~~~di~~a~~~g~~ikli~~~~~~~~~i~~~V~P~li~~~~~la 277 (438)
..+ .-.++++..+..++-.|+..+-.....+|.+|. +.++++.- .|++.+....
T Consensus 216 -~~~---~~GEifv~k~~s~~i~dla~~~~~~~~~k~iG~--RpGEKl~E----~l~s~~e~~~ 269 (324)
T TIGR03589 216 -ERM---LGGEIFVPKIPSMKITDLAEAMAPECPHKIVGI--RPGEKLHE----VMITEDDARH 269 (324)
T ss_pred -HHC---CCCEEEECCCCCCHHHHHHHHHHCCCCEEECCC--CCCHHHHH----HHCCHHHHHH
T ss_conf -828---898499836970259999998604698614578--88602343----3268878656
No 400
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=69.22 E-value=8.8 Score=18.47 Aligned_cols=98 Identities=22% Similarity=0.159 Sum_probs=50.5
Q ss_pred EEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEEECCCCCC
Q ss_conf 99982-56678999999999899999973996599999826852002788771022078889844889989998648888
Q gi|254780900|r 7 VGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFVELIGGED 85 (438)
Q Consensus 7 IgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVVEliGg~~ 85 (438)
|-|.| .|.+|+.+++.|.++ | .++.++ +|+. .++.. .+....++.+...|+|+.+-+-+.
T Consensus 1 ILVtG~~GfiGs~l~~~L~~~--------g--~~v~~~-~r~~-----~D~~d---~~~l~~~~~~~~pd~VihlAa~~~ 61 (284)
T pfam04321 1 ILVTGANGQLGRELTRLLAER--------G--VEVVAL-DRPE-----LDLTD---PEAVAALVREARPDVVVNAAAYTA 61 (284)
T ss_pred EEEECCCCHHHHHHHHHHHHC--------C--CEEEEE-CCCC-----CCCCC---HHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 699648998999999999868--------9--989995-4862-----57889---999999998649979997241355
Q ss_pred CCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 511357888863270288504177887689999875313966996056
Q gi|254780900|r 86 YPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAA 133 (438)
Q Consensus 86 ~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~eas 133 (438)
+ ..+.+.-......|- ..-..|.++|+++++.|.|=+|
T Consensus 62 -~-----~~~~~~~~~~~~~Nv----~~t~~l~~~~~~~~~~~i~~Ss 99 (284)
T pfam04321 62 -V-----DKAESEPELAYAVNA----LGPGNLAEACAARGAPLIHIST 99 (284)
T ss_pred -C-----HHHHHCHHHHHHHHH----HHHHHHHHHHHHCCCCEEEECC
T ss_conf -5-----677748888998759----9999999998744985798417
No 401
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=68.92 E-value=4.5 Score=20.52 Aligned_cols=20 Identities=45% Similarity=0.624 Sum_probs=17.6
Q ss_pred EEEEEECCCHHHHHHHHHHH
Q ss_conf 69999825667899999999
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQ 24 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~ 24 (438)
.||+++|.|+||+.++-.|.
T Consensus 1 ~KV~viGaG~VG~s~a~~l~ 20 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLL 20 (313)
T ss_pred CEEEEECCCHHHHHHHHHHH
T ss_conf 93999898747899999996
No 402
>TIGR02371 ala_DH_arch alanine dehydrogenase; InterPro: IPR012742 This enzyme, a homologue of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other archaea..
Probab=68.48 E-value=3.1 Score=21.62 Aligned_cols=83 Identities=17% Similarity=0.239 Sum_probs=46.3
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC--------CCCCCCCHHCCCHHHHHCCCCCC
Q ss_conf 2699998256678999999999899999973996599999826852002--------78877102207888984488998
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDR--------GIDCLRYEWFDDPLIMAGEADID 75 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~--------~~~~~~~~~~~d~~~li~~~~ID 75 (438)
.=++|++|||+=.. -||. .|.+. .+++-+.+.+|..+-.. ++.. ....+.++.|-+. ++|
T Consensus 129 ssv~G~iGaG~QA~---tQL~----Al~rV--fd~eeV~~y~rt~~~~~kF~~~~skd~~~-~~~a~~~p~E~v~--~cD 196 (327)
T TIGR02371 129 SSVLGLIGAGRQAY---TQLE----ALSRV--FDLEEVKVYSRTKEAAEKFVKRASKDYEV-PVRAATDPAEKVE--DCD 196 (327)
T ss_pred CCEEEEEECCHHHH---HHHH----HHHHH--CCCCEEEEEECCHHHHHHHHHHHHCCCCC-CEEECCCCHHHHC--CCC
T ss_conf 63355763685799---9999----98762--55450699861768899999875202465-1242126747770--786
Q ss_pred EEEECCCCCCCCHHHHHH--HHHHCCEEEE
Q ss_conf 999864888851135788--8863270288
Q gi|254780900|r 76 VFVELIGGEDYPAYDAVR--IALMRGCHVV 103 (438)
Q Consensus 76 vVVEliGg~~~pA~~~i~--~AL~~GkhVV 103 (438)
|+|= .+|.+.-+- .+.+-|-|+=
T Consensus 197 ilVT-----tTPsRkPvVkA~WV~eGTHIn 221 (327)
T TIGR02371 197 ILVT-----TTPSRKPVVKADWVEEGTHIN 221 (327)
T ss_pred EEEE-----ECCCCCCEEEEECCCCCCCEE
T ss_conf 7998-----568989607542259888255
No 403
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli..
Probab=68.43 E-value=9.1 Score=18.36 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=48.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC----CC-------CCCCC--CCCCHHCC---------
Q ss_conf 9999825667899999999989999997399659999982685----20-------02788--77102207---------
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDK----NI-------DRGID--CLRYEWFD--------- 63 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~----~k-------~~~~~--~~~~~~~~--------- 63 (438)
+|-|+|+|--|+.++..|. ..|+. -+.|.|.|. +. .+++. .++.....
T Consensus 23 ~VLiiGaGgLGs~~~~~LA--------~AGVG--~i~i~D~D~V~~SNLqRQ~Lf~e~Dv~~~~pK~e~aa~~l~~LN~~ 92 (210)
T TIGR02356 23 HVLIIGAGGLGSPAALYLA--------AAGVG--TITIVDDDHVDLSNLQRQILFAEEDVGTLRPKVEAAAERLRELNSD 92 (210)
T ss_pred CEEEEEECHHHHHHHHHHH--------HCCCC--EEEEEECCEECHHHCHHHHHHCHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 6599972614568999998--------28883--7899851677010120554303244201315899999999853889
Q ss_pred -------------CHHHHHCCCCCCEEEECCCCCCCC-HHHHH-HHHHHCCEEEEEE
Q ss_conf -------------888984488998999864888851-13578-8886327028850
Q gi|254780900|r 64 -------------DPLIMAGEADIDVFVELIGGEDYP-AYDAV-RIALMRGCHVVTA 105 (438)
Q Consensus 64 -------------d~~~li~~~~IDvVVEliGg~~~p-A~~~i-~~AL~~GkhVVTA 105 (438)
+..+++++-|.|+|++++ |.. ++-+| ..|-+.|+.-|+|
T Consensus 93 i~v~a~~~~vt~~~~~~~i~~~DPdlVlDc~---DNf~tryliNdaC~~~~~PlI~a 146 (210)
T TIGR02356 93 IRVTALKERVTAENLELLIENVDPDLVLDCT---DNFATRYLINDACQALGIPLISA 146 (210)
T ss_pred CEEEEEEECCCHHHHHHHHHCCCCCEEEECC---CCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 6899854202779999996238996896156---68778899999999847986999
No 404
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; InterPro: IPR006009 The murG gene of Escherichia coli encodes the N-acetylglucosaminyltransferase, UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, responsible for the final step in the formation of the lipid-linked disaccharide-pentapeptide subunit of peptidoglycan. The enzyme is peripherally associated with the inner face of the cytoplasmic membrane. Therefore, the peptidoglycan subunit is completely assembled before it traverses the cytoplasmic membrane .; GO: 0050511 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity, 0019277 UDP-N-acetylgalactosamine biosynthetic process, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=68.29 E-value=9.2 Score=18.34 Aligned_cols=195 Identities=19% Similarity=0.137 Sum_probs=103.8
Q ss_pred CCCCEEEEEECCCHHH----HHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC------CCCCCC--------------
Q ss_conf 9872699998256678----9999999998999999739965999998268520------027887--------------
Q gi|254780900|r 1 MAGVLKVGVAGLGTVG----SALIRSIQKREGRFKDLDQHSFVVSAISARDKNI------DRGIDC-------------- 56 (438)
Q Consensus 1 Msk~ikIgiiG~G~VG----~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k------~~~~~~-------------- 56 (438)
|+++++|.|.|=||=| -++++.|.++ +..+++..+...+.-. +.++..
T Consensus 2 ~~~~~~~~~~gGGTGG~fPAlA~a~~l~~~--------~~~~~v~~lG~~~g~e~~lv~~~~~~~~~~i~~~gl~~~~~~ 73 (368)
T TIGR01133 2 MNKMKKVALAGGGTGGIFPALAVAEELIKR--------GPEVEVVWLGTKRGLEERLVPSKEGIEFLTIPVGGLRRKGSK 73 (368)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHH--------CCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCH
T ss_conf 988228999727830268999999999974--------893699985067750000343215741777740100365510
Q ss_pred -----C---CCHHCCCHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCC-EEEEE-ECH-HHHHHHHHHHHHHHHHCC
Q ss_conf -----7---102207888984488998999864888851135788886327-02885-041-778876899998753139
Q gi|254780900|r 57 -----L---RYEWFDDPLIMAGEADIDVFVELIGGEDYPAYDAVRIALMRG-CHVVT-ANK-ALIASHGKDLALLAQKNN 125 (438)
Q Consensus 57 -----~---~~~~~~d~~~li~~~~IDvVVEliGg~~~pA~~~i~~AL~~G-khVVT-ANK-allA~~g~eL~~lA~~~g 125 (438)
+ -..-+-...+++.+-..|+|| -+||. .+..-+.+|...| +.+|+ -|- +-++. +-|.+.|++-.
T Consensus 74 ~~~~~~~~~~~~~~~~a~~~l~~~~p~~v~-G~GGY--~s~P~~~AA~l~g~iP~~~EQN~~pG~~N--k~ls~~A~~V~ 148 (368)
T TIGR01133 74 KLLKLPLLKLLKAVLQARRILKKFKPDVVV-GFGGY--VSGPAGLAAKLLGRIPLILEQNAVPGLTN--KLLSRFAKRVL 148 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEE-ECCCH--HHHHHHHHHHHCCCCCEEEEECCHHHHHH--HHHHHHHCEEE
T ss_conf 146788999999999999998600874798-74736--78999999876679948986154125788--88788744311
Q ss_pred CEE-----E---EECCCCCHHHHHHHHHHHHHCCCCEEEE--------EEECCCH------------------H-HHEEH
Q ss_conf 669-----9---6056453013189998764128620343--------3314200------------------0-00000
Q gi|254780900|r 126 AIL-----N---FEAAVAGGIPIIRILKNYVEYDEINRVY--------GIINGTC------------------N-YILSH 170 (438)
Q Consensus 126 v~l-----~---~easV~ggiPii~~l~~~l~~~~i~~i~--------GIlnGT~------------------n-yIL~~ 170 (438)
+.| + .|+.|..|-|+-+.+++.=..+....+. =|+=|+- . .++--
T Consensus 149 ~~f~~~~~~~~~~~~~~~~g~pvr~~~~~~~~~~~~~~~~~~~~~~~ilv~GGSQGA~~lN~~vp~~~~~L~~~~~~~~~ 228 (368)
T TIGR01133 149 VSFPGAKKFFPAAEKVVVVGNPVREEIRSLPAARARKRFKLRPGKLRILVLGGSQGAKILNELVPKALAKLAEKGLILVI 228 (368)
T ss_pred EECHHHHCCCCCCCCEEEECCHHHHHHHCCCCHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 10513322676667568701413454303782568886216899827999627376899999999999886401652588
Q ss_pred HHCCCCCHHHHHHHHHHCC--CCCCCCCCCCCHHHHHHHH
Q ss_conf 1006877889988787617--6156532232117899999
Q gi|254780900|r 171 MNNLGLSFQDCLEEARRQG--YAEGDATFDINGVDSSHKI 208 (438)
Q Consensus 171 m~~~g~~f~~al~~Aq~lG--yaE~DP~~Di~G~Daa~Kl 208 (438)
......++++.-+.-|++| ..+-.|-.|-.-+=.+.|-
T Consensus 229 ~~~g~~~~~~~~~~y~~~~l~~~~~~~f~~~~dm~~~y~~ 268 (368)
T TIGR01133 229 IQGGKGDLEKVKNVYSELGLVAAKITPFIDNEDMAAAYAA 268 (368)
T ss_pred EECCHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHH
T ss_conf 8766377999999852137102221037787579999987
No 405
>PRK09864 putative fructose-specific phosphotransferase system protein FrvX; Provisional
Probab=68.23 E-value=8.5 Score=18.57 Aligned_cols=84 Identities=18% Similarity=0.335 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHH---HCCCEEEEECCCCCHHHHHHHHHHH-HHCCCCEEEEEEECCCHHHHEEHHHC-CCCCHHHHH--
Q ss_conf 8876899998753---1396699605645301318999876-41286203433314200000000100-687788998--
Q gi|254780900|r 110 IASHGKDLALLAQ---KNNAILNFEAAVAGGIPIIRILKNY-VEYDEINRVYGIINGTCNYILSHMNN-LGLSFQDCL-- 182 (438)
Q Consensus 110 lA~~g~eL~~lA~---~~gv~l~~easV~ggiPii~~l~~~-l~~~~i~~i~GIlnGT~nyIL~~m~~-~g~~f~~al-- 182 (438)
++.|.+|+--.-+ ++| .++|. .+||=-|-.-.-+.. +.+.+=.+|.|++-.+.--.+++=++ +..+|++..
T Consensus 58 l~AHmDEIGf~V~~I~~~G-~l~~~-~vGG~~~~~l~gq~V~i~t~~g~~i~GViG~~~~H~~~~~~~~~~~~~~~l~ID 135 (356)
T PRK09864 58 VVGHMDEVGFMVTHIDESG-FLRFT-TIGGWWNQSMLNHRVTIRTHKGVKIPGVIGSVAPHALTEKQKQQPLSFDEMFID 135 (356)
T ss_pred EEEECCCEEEEEEEECCCC-EEEEE-ECCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCHHHCCCCCCHHHEEEE
T ss_conf 9980350379999986798-79999-718765042236679999278978889981667710473232579973309999
Q ss_pred ------HHHHHCCCCCCCC
Q ss_conf ------8787617615653
Q gi|254780900|r 183 ------EEARRQGYAEGDA 195 (438)
Q Consensus 183 ------~~Aq~lGyaE~DP 195 (438)
+||.++|.---||
T Consensus 136 iGa~s~eEa~~~gI~iGd~ 154 (356)
T PRK09864 136 IGANSREEVEKRGVEIGDF 154 (356)
T ss_pred CCCCCHHHHHHCCCCCCCE
T ss_conf 6889999999559999998
No 406
>KOG4354 consensus
Probab=68.13 E-value=8.4 Score=18.63 Aligned_cols=93 Identities=17% Similarity=0.176 Sum_probs=49.6
Q ss_pred CCCEEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCC------HHCCCHHHHHCCCCC
Q ss_conf 8726999982-566789999999998999999739965999998268520027887710------220788898448899
Q gi|254780900|r 2 AGVLKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRY------EWFDDPLIMAGEADI 74 (438)
Q Consensus 2 sk~ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~------~~~~d~~~li~~~~I 74 (438)
+|++|||++| -|--|+.++++|..+ .-+++..+..|.+.-.+-...++. .-+.|...+....-+
T Consensus 17 ~k~~rv~LlGArGYTGknlv~Lin~H---------Pylevthvssrel~Gqkl~~ytk~eiqy~~lst~D~~klee~~av 87 (340)
T KOG4354 17 EKDIRVGLLGARGYTGKNLVRLINNH---------PYLEVTHVSSRELAGQKLEVYTKLEIQYADLSTVDAVKLEEPHAV 87 (340)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHCCC---------CCEEEEEEEHHHHCCCCCCCCCHHHEEECCCCHHHHHHHHCCCCE
T ss_conf 89825998733665416699886389---------736888632254347715674322123234424667876257764
Q ss_pred CEEEECCCCCCCCHHHHHH-HHHHCCEEEEEE
Q ss_conf 8999864888851135788-886327028850
Q gi|254780900|r 75 DVFVELIGGEDYPAYDAVR-IALMRGCHVVTA 105 (438)
Q Consensus 75 DvVVEliGg~~~pA~~~i~-~AL~~GkhVVTA 105 (438)
|-.+=+. ....-+.++. .--.+||.++-+
T Consensus 88 d~wvmaL--Pn~vckpfv~~~~s~~gks~iid 117 (340)
T KOG4354 88 DHWVMAL--PNQVCKPFVSLTESSDGKSRIID 117 (340)
T ss_pred EEEEEEC--CHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 5566525--41567888888762377146631
No 407
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.06 E-value=7.5 Score=18.97 Aligned_cols=86 Identities=19% Similarity=0.111 Sum_probs=42.0
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEEECCCCC
Q ss_conf 69999825667899999999989999997399659999982685200278877102207888984488998999864888
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFVELIGGE 84 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVVEliGg~ 84 (438)
=||.++|+|.-|.+.++.|.++ |.+ + .+.|.+........... ..+.|.... .-.+.|.+|- -.|+
T Consensus 10 k~v~v~GlG~sG~s~a~~L~~~--------G~~--V-~~~D~~~~~~~~~~~~g-~~~~~~~~~-~~~~~~~iV~-SPGI 75 (457)
T PRK01390 10 KTVALFGLGGSGLATARALKAG--------GAE--V-IAWDDNPDSVAKAAAAG-IATADLRTA-DWSQFAALVL-SPGV 75 (457)
T ss_pred CEEEEEEECHHHHHHHHHHHHC--------CCE--E-EEEECCCHHHHHHHHCC-CCCCCCCCC-CCCCCCEEEE-CCCC
T ss_conf 9899994369999999999978--------997--9-99939920668998759-831455412-3203878999-9988
Q ss_pred --CCCHH-HHHHHHHHCCEEEEE
Q ss_conf --85113-578888632702885
Q gi|254780900|r 85 --DYPAY-DAVRIALMRGCHVVT 104 (438)
Q Consensus 85 --~~pA~-~~i~~AL~~GkhVVT 104 (438)
+.|.. ..+.+|-++|..|++
T Consensus 76 p~~~p~~~~~v~~a~~~gi~v~s 98 (457)
T PRK01390 76 PLTHPKPHWTVDLARAAGVEVIG 98 (457)
T ss_pred CCCCCCCHHHHHHHHHCCCEEEE
T ss_conf 86566731999999985991860
No 408
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=68.03 E-value=9.3 Score=18.31 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=17.2
Q ss_pred CC-CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 98-72699998256678999999999899999973996599
Q gi|254780900|r 1 MA-GVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVV 40 (438)
Q Consensus 1 Ms-k~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i 40 (438)
|+ +++..|++|.- |..++--.+++ ...+..|.+...
T Consensus 1 ~~~~~~l~GviG~P-I~hSlSP~iHn---~~~~~lgl~~~Y 37 (284)
T PRK12549 1 MSRRSFLAGLIGAG-IQASLTPAMHE---AEGDAQGLRYVY 37 (284)
T ss_pred CCCCCEEEEEECCC-CCCCCCHHHHH---HHHHHCCCCCEE
T ss_conf 99982699998988-03032599999---999987998099
No 409
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.65 E-value=9.5 Score=18.26 Aligned_cols=52 Identities=10% Similarity=0.187 Sum_probs=37.7
Q ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 248887489999998866995788882267787761359999210488999999998623
Q gi|254780900|r 360 IRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNG 419 (438)
Q Consensus 360 v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~ 419 (438)
..-.+|+.+++-+.|++++|+|+-+.|=- ++-...+| +.+.+..+|++.|-.
T Consensus 10 ~~~~~~ia~r~F~al~~~gvNv~mIsQGa---Se~NIs~v-----V~~~d~~~Av~alH~ 61 (65)
T cd04918 10 VQRSSLILERAFHVLYTKGVNVQMISQGA---SKVNISLI-----VNDSEAEGCVQALHK 61 (65)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCC---CCCCEEEE-----ECHHHHHHHHHHHHH
T ss_conf 43341789999999986898479871788---73428999-----807899999999999
No 410
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase; InterPro: IPR011912 Lipopolysaccharides (LPS) are glycolipids that consitutes the outer monolayer of the outer membranes of most Gram-negative bacteria . They consist of lipid A (endotoxin) which anchors LPS to the outer membrane, a non-repeating core oligosachharide, and an immunogenic O-antigen repeat polymer, which is an oligosaccharide of 1-40 units that variesbetween different strains of bacteria. Although the O-antigen and most of the core domain are not necessary for growth in the lab, they appear to help bacteria resist environmental stresses including the complement system and antibiotics. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of LPS in Gram-negative bacteria . This enzyme is homologous to UDP-glucose 4-epimerase (IPR005886 from INTERPRO) and belongs to the NAD dependent epimerase/dehydratase family. It participates in the biosynthetic pathway leading to incorporation of heptose, a conserved sugar, into the core region of LPS, performing the reaction shown below: ADP-D-glycero-D-manno-heptose = ADP-L-glycero-D-manno-heptose It is a homopentameric enzyme with each monomer composed of two domains: an N-terminal modified Rossman fold domain for NADP binding, and a C-terminal substrate binding domain.; GO: 0008712 ADP-glyceromanno-heptose 6-epimerase activity, 0050661 NADP binding, 0005975 carbohydrate metabolic process.
Probab=67.60 E-value=9.5 Score=18.25 Aligned_cols=243 Identities=15% Similarity=0.145 Sum_probs=110.3
Q ss_pred EEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC--C------------CCCCCCCCCCCCHHCCC------HHH
Q ss_conf 982-56678999999999899999973996599999826--8------------52002788771022078------889
Q gi|254780900|r 9 VAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISAR--D------------KNIDRGIDCLRYEWFDD------PLI 67 (438)
Q Consensus 9 iiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r--~------------~~k~~~~~~~~~~~~~d------~~~ 67 (438)
|-| .|-|||.++.-|+++.. .-.|.. +|. + ..-++-.++....++++ +..
T Consensus 3 VTGGAGFIGSNlv~~LN~~gP--------~~dI~v-vD~L~~~~~F~ng~~~slg~~kk~~Nl~~~~I~d~i~k~~~~~~ 73 (353)
T TIGR02197 3 VTGGAGFIGSNLVKALNERGP--------ETDILV-VDNLRDDATFENGNPQSLGHFKKFLNLADLEIADYIDKDDLLDR 73 (353)
T ss_pred ECCCCCHHHHHHHHHHHHCCC--------CCEEEE-EEECCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCHHHHHH
T ss_conf 506763689999999964389--------542888-74078755246777432234244325554112133588546999
Q ss_pred HHCC----CCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEE--CCCCC-HHHH
Q ss_conf 8448----899899986488885113578888632702885041778876899998753139669960--56453-0131
Q gi|254780900|r 68 MAGE----ADIDVFVELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFE--AAVAG-GIPI 140 (438)
Q Consensus 68 li~~----~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~e--asV~g-giPi 140 (438)
+... .+||+|+= +| |-.=+.. ..|.=|.--| ..+-.+|.+.|.++++.|.|= |+|=| +-+-
T Consensus 74 l~~~~~~~~~~~avfH-~G-----AcS~TTe--~D~~~~m~nN----~~ys~~Ll~~c~~~~~~~IYASSAatYG~~~~~ 141 (353)
T TIGR02197 74 LEKGSEALGKIEAVFH-QG-----ACSDTTE--TDGEYMMENN----YQYSKRLLDWCAEKGVPFIYASSAATYGDGEAG 141 (353)
T ss_pred HHHCCCCCCCCCEEEE-CC-----HHHHHHH--HHHHHHHHHH----HHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCC
T ss_conf 9830201388337997-33-----1253588--6279999889----999999999999648986885031210768777
Q ss_pred HHHHHHH--HHCCCCEEEEEEECCCHHHHEEHHHCCCCCHHHHHH-HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 8999876--412862034333142000000001006877889988-7876176156532232117899999999999818
Q gi|254780900|r 141 IRILKNY--VEYDEINRVYGIINGTCNYILSHMNNLGLSFQDCLE-EARRQGYAEGDATFDINGVDSSHKIAILSAIAFG 217 (438)
Q Consensus 141 i~~l~~~--l~~~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~al~-~Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa~~~~g 217 (438)
.+.-++. |.-=+-+-++| -| ..=|++.++ +++.... ++. . ..|
T Consensus 142 f~~~~~~e~L~kLrPlN~YG---------yS-----K~lFD~~v~~~~~~~~~----~~~---------------q-~~G 187 (353)
T TIGR02197 142 FREDRELEELQKLRPLNVYG---------YS-----KFLFDQYVRRRVLPGEA----LSA---------------Q-VVG 187 (353)
T ss_pred CCCCCCHHHHHHCCCCCCCH---------HH-----HHHHHHHHHHHHCCCCC----CCC---------------C-EEE
T ss_conf 77665658897518788612---------21-----67898999998601247----986---------------4-241
Q ss_pred CCCCCCCCHHHHHHHCCHHH--------HHHHHHCCCEEEEEEEE-EECCCCCEEEEEEEEEECCCCCCCCCCCCCEEEE
Q ss_conf 85553100012232047674--------03478719858741013-3136783569999864167730003665416898
Q gi|254780900|r 218 IDTSVEGVYCEGISNITLED--------IRGAADFGYCIKFLAMA-RRKGKGIIRYVYPVLLKYDSVMALVDGITNAVVI 288 (438)
Q Consensus 218 ~~~~~~~v~~~gI~~i~~~d--------i~~a~~~g~~ikli~~~-~~~~~~i~~~V~P~li~~~~~la~v~g~~Nai~i 288 (438)
.+. +-|-|-++=-+.. ....++ |..+||-... +--.+|=..| + |-.|+++-++...
T Consensus 188 LrY----FNVYGP~E~HKG~MASv~f~~~~q~~~-~~~v~LF~~~~~~~~dGeQ~R---------D-FVYV~DV~~~n~~ 252 (353)
T TIGR02197 188 LRY----FNVYGPREYHKGKMASVAFHLFNQIKA-GGNVKLFKSHKEGFKDGEQLR---------D-FVYVKDVVKVNLW 252 (353)
T ss_pred EEE----CCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCC---------C-CEEHHHHHHHHHH
T ss_conf 021----134688867544369999998889973-788202356685898878110---------1-1552769999999
Q ss_pred EEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 311310058972687666102068899999974
Q gi|254780900|r 289 ETNGLGKLTMTGPGAGGSATASAVLGDICSIAK 321 (438)
Q Consensus 289 ~~~~~g~~~~~G~GAG~~~TAsaV~sDli~i~~ 321 (438)
--+.-+..-++==|-|+--|=..++.=+++-++
T Consensus 253 ~~~~~~~SGifN~GtG~ArsF~dla~a~~~~~~ 285 (353)
T TIGR02197 253 LLENPSKSGIFNVGTGKARSFNDLADAVFKALG 285 (353)
T ss_pred HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 984889841564477888668999999999873
No 411
>PRK08163 salicylate hydroxylase; Provisional
Probab=67.52 E-value=6.5 Score=19.40 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=28.7
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC
Q ss_conf 9872699998256678999999999899999973996599999826852
Q gi|254780900|r 1 MAGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKN 49 (438)
Q Consensus 1 Msk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~ 49 (438)
|++.-+|.|+|.|-+|-.++-.|.+ .|.++.| ..+..+
T Consensus 1 M~~~~~V~IVGaGiaGL~lA~~L~r--------~Gi~v~V---~Er~~~ 38 (396)
T PRK08163 1 MTHVTPVLIVGGGIGGLAAALALAR--------QGIKVKL---LEQAAE 38 (396)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH--------CCCCEEE---ECCCCC
T ss_conf 9899849998978899999999997--------8999999---917998
No 412
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=67.40 E-value=9.6 Score=18.22 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=4.7
Q ss_pred EEEEEEECCC
Q ss_conf 0058972687
Q gi|254780900|r 294 GKLTMTGPGA 303 (438)
Q Consensus 294 g~~~~~G~GA 303 (438)
+..++.|-|-
T Consensus 418 ~hvii~G~Gr 427 (558)
T PRK10669 418 NHALLVGYGR 427 (558)
T ss_pred CCEEEECCCH
T ss_conf 9989989886
No 413
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=67.14 E-value=9.7 Score=18.19 Aligned_cols=85 Identities=13% Similarity=0.149 Sum_probs=50.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC-------CCCCHHCCCHHHHHCCCCCCEEE
Q ss_conf 99998256678999999999899999973996599999826852002788-------77102207888984488998999
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGID-------CLRYEWFDDPLIMAGEADIDVFV 78 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~-------~~~~~~~~d~~~li~~~~IDvVV 78 (438)
.+|++|+|..+...++.+... .+++=+.|.+|+.+..+.+. .....-.+++.+.+.. .|+|+
T Consensus 132 ~laiIGaG~qA~~ql~a~~~v---------~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~--aDiIv 200 (330)
T COG2423 132 TLAIIGAGAQARTQLEALKAV---------RDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEG--ADIVV 200 (330)
T ss_pred EEEEECCCHHHHHHHHHHHHH---------CCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEECCCHHHHHHC--CCEEE
T ss_conf 799988848999999999962---------8961899976898999999999876338651323689988613--99899
Q ss_pred ECCCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 86488885113578888632702885
Q gi|254780900|r 79 ELIGGEDYPAYDAVRIALMRGCHVVT 104 (438)
Q Consensus 79 EliGg~~~pA~~~i~~AL~~GkhVVT 104 (438)
-++...+ |- +-...|+.|-||..
T Consensus 201 t~T~s~~-Pi--l~~~~l~~G~hI~a 223 (330)
T COG2423 201 TATPSTE-PV--LKAEWLKPGTHINA 223 (330)
T ss_pred EECCCCC-CE--ECHHHCCCCCEEEE
T ss_conf 9428998-76--23866589708970
No 414
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=66.45 E-value=10 Score=18.10 Aligned_cols=32 Identities=13% Similarity=0.079 Sum_probs=22.7
Q ss_pred CCCHHHHHHHCCHHHHHHHHHCCCEEEEEEEE
Q ss_conf 10001223204767403478719858741013
Q gi|254780900|r 223 EGVYCEGISNITLEDIRGAADFGYCIKFLAMA 254 (438)
Q Consensus 223 ~~v~~~gI~~i~~~di~~a~~~g~~ikli~~~ 254 (438)
+.|-+-|+-.+-..-+++|+.+|..+=-+.+.
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~ 199 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRS 199 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 89999877489999999999869969999578
No 415
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=66.26 E-value=10 Score=18.07 Aligned_cols=87 Identities=22% Similarity=0.271 Sum_probs=48.3
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC----CCCCCC-----CCCCC----------------
Q ss_conf 69999825667899999999989999997399659999982685----200278-----87710----------------
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDK----NIDRGI-----DCLRY---------------- 59 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~----~k~~~~-----~~~~~---------------- 59 (438)
=+|.++|+|..|+-++.-|. ..|+. -..+.|.|. +..|.+ +....
T Consensus 42 a~VlvvG~GGLG~p~~~yLa--------aaGvG--~i~ivD~D~Ve~sNL~RQil~~~~diG~~K~~~A~~~l~~lNp~i 111 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLA--------SAGVG--TITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDI 111 (370)
T ss_pred CCEEEECCCHHHHHHHHHHH--------HCCCC--EEEEEECCCCCCCCHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCC
T ss_conf 97899888757899999999--------82897--489873898260210555426976669757999999999878997
Q ss_pred -------HH-CCCHHHHHCCCCCCEEEECCCCCCCCH--HHHHHHHHHCCEEEEEEC
Q ss_conf -------22-078889844889989998648888511--357888863270288504
Q gi|254780900|r 60 -------EW-FDDPLIMAGEADIDVFVELIGGEDYPA--YDAVRIALMRGCHVVTAN 106 (438)
Q Consensus 60 -------~~-~~d~~~li~~~~IDvVVEliGg~~~pA--~~~i~~AL~~GkhVVTAN 106 (438)
.+ .++..++++ +.|+|++++ |.++ |-+-..|.+.||..|.+.
T Consensus 112 ~i~~~~~~l~~~n~~~li~--~~DvVvD~t---DNf~tRylindaC~~~~~PlV~ga 163 (370)
T PRK05600 112 RVNALRERLTAENAVELLN--GVDLVLDGS---DSFATKFLVADAAEITGTPLVWGT 163 (370)
T ss_pred CEEEHHHHCCHHHHHHHHH--CCCEEEECC---CCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 1573566469999998763--687899778---887999999999998499769845
No 416
>KOG0068 consensus
Probab=66.06 E-value=10 Score=18.05 Aligned_cols=58 Identities=14% Similarity=0.027 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 88874899999988669957888822677877613599992104889999999986238300047
Q gi|254780900|r 362 NFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRY 426 (438)
Q Consensus 362 DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~ 426 (438)
.-||++.....++..|++ ..+..+.+..-+.-+--.+.-+.++++-.+|.+.++..+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~-------~~s~~~~d~~~l~A~i~~~~~e~i~~~~~nLvn~~~~~k~ 402 (406)
T KOG0068 345 LVPGVLKGVNGVLSVHNI-------YKSFSDGDIALLRADISKGIIEPIKDIYVNLVNADAKAKQ 402 (406)
T ss_pred HHHHHHCCCCCEEEEEEE-------HHHCCCCCEEEEHHHHHCCCCCHHHHHHHHHHCCCHHHHH
T ss_conf 509975178650355420-------1220356612358877525722578998887624256665
No 417
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=65.91 E-value=10 Score=18.03 Aligned_cols=15 Identities=13% Similarity=0.058 Sum_probs=5.4
Q ss_pred CCCCCCCCCCCCCHH
Q ss_conf 176156532232117
Q gi|254780900|r 188 QGYAEGDATFDINGV 202 (438)
Q Consensus 188 lGyaE~DP~~Di~G~ 202 (438)
+|..=..-+.=|+|.
T Consensus 246 ~~~~l~gk~vaIqGf 260 (469)
T PTZ00079 246 LNIVVEKKTAVVSGS 260 (469)
T ss_pred CCCCCCCCEEEEECC
T ss_conf 799857888999766
No 418
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=65.40 E-value=10 Score=17.96 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=23.1
Q ss_pred EEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC
Q ss_conf 99982-5667899999999989999997399659999982685200
Q gi|254780900|r 7 VGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNID 51 (438)
Q Consensus 7 IgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~ 51 (438)
|.++| .|++|+.+++.|.++ |.+++ +..|+.++.
T Consensus 1 IlV~GatG~iG~~vv~~L~~~--------g~~Vr---~l~R~~~~~ 35 (232)
T pfam05368 1 ILVFGATGYQGGSVVRASLKA--------GHPVR---ALVRDPKSE 35 (232)
T ss_pred EEEECCCHHHHHHHHHHHHHC--------CCCEE---EEECCCCHH
T ss_conf 099896828999999999858--------99389---997187366
No 419
>PRK09084 aspartate kinase III; Validated
Probab=65.35 E-value=10 Score=17.95 Aligned_cols=280 Identities=10% Similarity=0.117 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHH-----HHHHHCCCEE---------EEECCCCCHHHHHHHHHHH-------HHCCCCEEEEEEECCCHH
Q ss_conf 177887689999-----8753139669---------9605645301318999876-------412862034333142000
Q gi|254780900|r 107 KALIASHGKDLA-----LLAQKNNAIL---------NFEAAVAGGIPIIRILKNY-------VEYDEINRVYGIINGTCN 165 (438)
Q Consensus 107 KallA~~g~eL~-----~lA~~~gv~l---------~~easV~ggiPii~~l~~~-------l~~~~i~~i~GIlnGT~n 165 (438)
+..+..+|+.+. ..-+++|+.- .....-+-+-|.+...++. +..+.+-=+.|-.--|.+
T Consensus 109 ~D~lls~GE~lSa~lla~~L~~~G~~a~~ld~~~~i~td~~~~~a~~~~~~~~~~~~~~~~~~~~~~v~Vv~GF~g~~~~ 188 (447)
T PRK09084 109 TDELVSHGELMSTLLFVEALRERGVQAEWFDVRKVMRTDDRFGRAEPDVAAIAELAQEQLLPLLEEGVVVTQGFIGSDEK 188 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCC
T ss_conf 99999746799999999999967998388177894676686665144789999999999877436986895004576699
Q ss_pred HHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH--------HHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHH
Q ss_conf 0000010068778899887876176156532232117899--------99999999981885553100012232047674
Q gi|254780900|r 166 YILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSS--------HKIAILSAIAFGIDTSVEGVYCEGISNITLED 237 (438)
Q Consensus 166 yIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa--------~Kl~ILa~~~~g~~~~~~~v~~~gI~~i~~~d 237 (438)
=..+.+-..|.+|+.++ -|..++=.|-.=--|++|+-+| +++-=|+ |. +..+...-|-.-+.|.-
T Consensus 189 G~~ttLGRGGSD~TAa~-la~~l~A~~~~IwtDV~Gi~taDPr~V~~A~~i~~ls---y~---Ea~ELa~~GAkVlHp~a 261 (447)
T PRK09084 189 GRTTTLGRGGSDYSAAL-LAEALNASRVEIWTDVPGIYTTDPRIVPAARRIDEIS---FE---EAAEMATFGAKVLHPAT 261 (447)
T ss_pred CCEEECCCCCCHHHHHH-HHHHCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCC---HH---HHHHHHHCCCHHCCHHH
T ss_conf 97776179960689999-9996698499996177833606987676652036348---99---99999977710017588
Q ss_pred HHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 03478719858741013313678356999986416773000366541689831131005897268766610206889999
Q gi|254780900|r 238 IRGAADFGYCIKFLAMARRKGKGIIRYVYPVLLKYDSVMALVDGITNAVVIETNGLGKLTMTGPGAGGSATASAVLGDIC 317 (438)
Q Consensus 238 i~~a~~~g~~ikli~~~~~~~~~i~~~V~P~li~~~~~la~v~g~~Nai~i~~~~~g~~~~~G~GAG~~~TAsaV~sDli 317 (438)
++.|.+.|-.++.-..-.....|-...-. +.+.+. -.+|.... ..--+.+.|.+-- -..++.+.++
T Consensus 262 v~pa~~~~IPi~I~nt~~P~~~GT~I~~~----~~~~~~------vk~I~~~~-~~~~i~i~~~~m~---~~~G~~~~if 327 (447)
T PRK09084 262 LLPAVRSNIPVFVGSSKDPEAGGTWITND----TENPPL------FRAIALRR-NQTLLTLHSLNML---HAHGFLAEVF 327 (447)
T ss_pred HHHHHHCCCEEEEECCCCCCCCCEEEECC----CCCCCC------CCCEECCC-CEEEEEEEECCCC---CCCCHHHHHH
T ss_conf 99999819759995578989997089426----656666------22111148-7699999837866---3201899999
Q ss_pred HHHHCCCCCCC-------CCCCCCCCCCCCCC----CCCC-HHHCCCCEEEEE---------E-----ECCCCCHHHHHH
Q ss_conf 99741777765-------56666783100234----4388-534465327999---------9-----248887489999
Q gi|254780900|r 318 SIAKTNTQKSV-------SWALGKESSSFSVI----HCDG-VYEEEKEYFIRL---------T-----IRNFEGILDKIT 371 (438)
Q Consensus 318 ~i~~~~~~~~~-------~~~~~~~~~~~~~~----~~~~-~~~~~~~yYLRl---------~-----v~DkpGVLa~It 371 (438)
++......... +..+-......... .... ..+. +-|-++ + ....||+.+++.
T Consensus 328 ~~l~~~~I~vd~i~sse~sis~~i~~~~~~~~~~~~~~~~~~~el--~~~~~v~~~~~~a~VsvVG~gm~~~~gva~r~f 405 (447)
T PRK09084 328 GILARHKISVDLITTSEVSVSLTLDTTGSTSTGDTLLTQALLMEL--SQLCRVEVEEGLALVALIGNNLSKACGVAKRVF 405 (447)
T ss_pred HHHHHCCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHH--HHCCCEEEECCEEEEEEECCCCCCCHHHHHHHH
T ss_conf 999975992799980465378997041145556689999999987--504848983894899998967232854999999
Q ss_pred HHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 998866995788882267787761359999210488999999998623
Q gi|254780900|r 372 SQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNG 419 (438)
Q Consensus 372 ~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~ 419 (438)
+.|+ +|+|+-+.|- .. +-...+|+ .+++.+.|++.|-.
T Consensus 406 ~aL~--~inI~~Isqg-sS--e~nIs~vV-----~~~d~~~Av~aLH~ 443 (447)
T PRK09084 406 GVLE--PFNIRMICQG-AS--EHNLCFLV-----PESDAEQVVQALHQ 443 (447)
T ss_pred HHHH--CCCCEEEEEC-CC--CCEEEEEE-----EHHHHHHHHHHHHH
T ss_conf 9853--7891899806-87--78799998-----48999999999999
No 420
>TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process.
Probab=65.30 E-value=10 Score=17.95 Aligned_cols=85 Identities=14% Similarity=0.148 Sum_probs=54.1
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC----CCC-CCCHHC----CCHHHHHCCCCC
Q ss_conf 26999982566789999999998999999739965999998268520027----887-710220----788898448899
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRG----IDC-LRYEWF----DDPLIMAGEADI 74 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~----~~~-~~~~~~----~d~~~li~~~~I 74 (438)
.-++-|+|.|-+|.=+++.|..+ .+.=+-|..|+..|... +.. ....+- ++..+.+. +.
T Consensus 185 ~~~~LliGAGeMg~Lva~~L~~~----------~v~~~~i~NRt~~rA~~LA~e~~~P~~~~f~~La~~~L~~~L~--~~ 252 (436)
T TIGR01035 185 GKKVLLIGAGEMGELVAKHLREK----------GVGKVLIANRTYERAEKLAKELGGPEAVKFEALALEKLEEALA--EA 252 (436)
T ss_pred CCEEEEEECCHHHHHHHHHHHHC----------CCCEEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH--HC
T ss_conf 64189982745799999999648----------9528988556778999999870786645444554899999974--28
Q ss_pred CEEEECCCCCCCC-HHHHHHHHHHCCE
Q ss_conf 8999864888851-1357888863270
Q gi|254780900|r 75 DVFVELIGGEDYP-AYDAVRIALMRGC 100 (438)
Q Consensus 75 DvVVEliGg~~~p-A~~~i~~AL~~Gk 100 (438)
||||=.||.++.. .++-++.|+.+-|
T Consensus 253 DivissTgA~~pi~~~~~~e~a~~~Rr 279 (436)
T TIGR01035 253 DIVISSTGAPEPIVSKEDVERALKERR 279 (436)
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHC
T ss_conf 899985576531002034899999722
No 421
>PRK06847 hypothetical protein; Provisional
Probab=65.23 E-value=7.8 Score=18.85 Aligned_cols=38 Identities=26% Similarity=0.236 Sum_probs=28.1
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC
Q ss_conf 9872699998256678999999999899999973996599999826852
Q gi|254780900|r 1 MAGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKN 49 (438)
Q Consensus 1 Msk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~ 49 (438)
|+.+=||.|+|.|-+|..++-.|.+ .|.++.| ..++..
T Consensus 1 m~~~kkV~IVGaG~aGL~lA~~L~~--------~Gi~v~V---~E~~~~ 38 (375)
T PRK06847 1 MGAVKKVLIVGGGIGGMSAAIALRK--------AGISVDL---VEIDPE 38 (375)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH--------CCCCEEE---EECCCC
T ss_conf 9899879999966899999999996--------7999999---908999
No 422
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=64.97 E-value=11 Score=17.91 Aligned_cols=134 Identities=16% Similarity=0.070 Sum_probs=65.8
Q ss_pred CCEEEEEECCCHHHHHHH-HHHHHHHHHHHHHCCCCEEEEEEEECCCCC-CCCCCCCCC-HH---CCC---HHHHHCCCC
Q ss_conf 726999982566789999-999998999999739965999998268520-027887710-22---078---889844889
Q gi|254780900|r 3 GVLKVGVAGLGTVGSALI-RSIQKREGRFKDLDQHSFVVSAISARDKNI-DRGIDCLRY-EW---FDD---PLIMAGEAD 73 (438)
Q Consensus 3 k~ikIgiiG~G~VG~~~~-~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k-~~~~~~~~~-~~---~~d---~~~li~~~~ 73 (438)
++.+||++|.=|||+..+ ..|...+.+.-+=.|+.++.+.-.-+.... -+-+|+|+. .+ ..| ..+.+.+.+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEECCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 86438985699854899999985667465478980699878899735854899868975658889920899999986389
Q ss_pred CCEEEECCCCCCCCHH--HHHHHHHHCCEEEEEE-CHHHHHHH-H--HHHHHHHHHCCCEEEE-ECCCCCH
Q ss_conf 9899986488885113--5788886327028850-41778876-8--9999875313966996-0564530
Q gi|254780900|r 74 IDVFVELIGGEDYPAY--DAVRIALMRGCHVVTA-NKALIASH-G--KDLALLAQKNNAILNF-EAAVAGG 137 (438)
Q Consensus 74 IDvVVEliGg~~~pA~--~~i~~AL~~GkhVVTA-NKallA~~-g--~eL~~lA~~~gv~l~~-easV~gg 137 (438)
.|++|.....+ ..-+ -+..+-++-|+++|.| |+--.|+. | -+..++.+.=|+.+.. .|+-+-|
T Consensus 82 ~D~ivnVvDA~-nLeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~Id~~~L~~~LGvPVv~tvA~~g~G 151 (653)
T COG0370 82 PDLIVNVVDAT-NLERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEG 151 (653)
T ss_pred CCEEEEEECCC-HHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCCCHHHHHHHHCCCEEEEEECCCCC
T ss_conf 98899960232-37777899999998599859996127568864971269999998689889987305889
No 423
>PRK08841 aspartate kinase; Validated
Probab=64.90 E-value=11 Score=17.90 Aligned_cols=246 Identities=14% Similarity=0.145 Sum_probs=108.0
Q ss_pred HHHHHHHCCCCEEEEEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH-----HHHHHHHHHC
Q ss_conf 99876412862034333142000000001006877889988787617615653223211789999-----9999999818
Q gi|254780900|r 143 ILKNYVEYDEINRVYGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHK-----IAILSAIAFG 217 (438)
Q Consensus 143 ~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~K-----l~ILa~~~~g 217 (438)
.+++.|..+++-=+.|-.-.+.+--.+.+-..|.+|+.++ -|..++-.|-.=--||+|+-+|.- ...|..+.|.
T Consensus 120 ~~~~~l~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~sA~~-lAa~l~A~~~eIwTDVdGv~taDPr~V~~A~~l~~isy~ 198 (392)
T PRK08841 120 TITELLEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVA-LAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFP 198 (392)
T ss_pred HHHHHHHCCCEEEECCEEECCCCCCEEECCCCCHHHHHHH-HHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCHH
T ss_conf 7998873598699418201079998756279977999999-999809978999856776363798687687282647899
Q ss_pred CCCCCCCCHHHHHHHCCHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEE
Q ss_conf 85553100012232047674034787198587410133136783569999864167730003665416898311310058
Q gi|254780900|r 218 IDTSVEGVYCEGISNITLEDIRGAADFGYCIKFLAMARRKGKGIIRYVYPVLLKYDSVMALVDGITNAVVIETNGLGKLT 297 (438)
Q Consensus 218 ~~~~~~~v~~~gI~~i~~~di~~a~~~g~~ikli~~~~~~~~~i~~~V~P~li~~~~~la~v~g~~Nai~i~~~~~g~~~ 297 (438)
. ..+...-|=.=+.+.-++.|.+.+-.++....-. .+.|-.. ..+ ...++.- +|....| ..-+.
T Consensus 199 E---a~ELa~~GAkVlHp~tv~pa~~~~Ipi~v~ntf~-~~~GT~I-~~~---~~~~~V~-------gIa~~~~-~~~i~ 262 (392)
T PRK08841 199 S---MEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFE-DGEGTLI-KGE---AGTQAVC-------GIALQRD-LALIE 262 (392)
T ss_pred H---HHHHHHCCCCCCCHHHHHHHHHCCCEEEEEECCC-CCCCEEE-ECC---CCCCCEE-------EEEECCC-EEEEE
T ss_conf 9---9999976996368889999987597599983687-9998289-667---8887338-------9984497-48999
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCCCC---CHHHCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf 972687666102068899999974177-776556666783100234438---8534465327999924888748999999
Q gi|254780900|r 298 MTGPGAGGSATASAVLGDICSIAKTNT-QKSVSWALGKESSSFSVIHCD---GVYEEEKEYFIRLTIRNFEGILDKITSQ 373 (438)
Q Consensus 298 ~~G~GAG~~~TAsaV~sDli~i~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~yYLRl~v~DkpGVLa~It~i 373 (438)
+.|.+.+.... .++ .+.+..... .......+-........++.. .+.....---+-+-=.+.+|+.+++.+.
T Consensus 263 v~~~~~~~l~~---~~~-~~~i~v~~v~~~~~~~~~~i~~~~~~~l~~~~~~~i~~~~~va~VsvVG~~~~Gva~~~f~a 338 (392)
T PRK08841 263 VSSESLSSLTK---QCQ-MLGIEVWNVIEEADCTQIVIKQDACAKLKLVFDDKIRNSEAVSLLTLVGLEANGMVDHACNQ 338 (392)
T ss_pred EECCCHHHHHH---HHH-HHCCEEEEECCCCCEEEEEECHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 84587078999---988-86956886103662279995788999998751131212689349999889985599999999
Q ss_pred HHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 8866995788882267787761359999210488999999998623
Q gi|254780900|r 374 MSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNG 419 (438)
Q Consensus 374 lak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~ 419 (438)
|++++|+|..+-|- +-...++ +.+++.+.|++.|-+
T Consensus 339 La~~~InI~~is~S-----EinIS~v-----V~~~d~~kAv~aLH~ 374 (392)
T PRK08841 339 LAQQGIDVHQCSTE-----PLSSMLV-----VDPANVDRAANILHK 374 (392)
T ss_pred HHHCCCCEEEEEEC-----CCEEEEE-----ECHHHHHHHHHHHHH
T ss_conf 99789987999803-----5789999-----849999999999998
No 424
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=64.62 E-value=11 Score=17.86 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=20.8
Q ss_pred EEEEECCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 992104889999999986238300047
Q gi|254780900|r 400 MITHKVSGKLIRDAIECFNGKSDAIRY 426 (438)
Q Consensus 400 iiTh~~~e~~i~~ai~~i~~l~~v~~~ 426 (438)
++||...-++||++.+.+.+=+.++..
T Consensus 337 lvt~~~~Le~INeaf~~m~~G~~IR~V 363 (366)
T COG1062 337 LVTHTIPLEDINEAFDLMHEGKSIRSV 363 (366)
T ss_pred HHHCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 765567689999999876478245678
No 425
>KOG1198 consensus
Probab=64.39 E-value=11 Score=17.83 Aligned_cols=55 Identities=15% Similarity=0.015 Sum_probs=26.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 27999924888748999999886699578888226778776135999921048899999999862383000473
Q gi|254780900|r 354 YFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAIRYS 427 (438)
Q Consensus 354 yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~~~~ 427 (438)
-|.++...-.+..+..+-..+.+..| -|.+.-+++ -++..++++++.+ ....++.
T Consensus 287 ~~~~~~~~~~~~~l~~l~~~ie~gki----------------kp~i~~~~p--~~~~~ea~~~~~~-~~~~GK~ 341 (347)
T KOG1198 287 NYRWLYFVPSAEYLKALVELIEKGKI----------------KPVIDSVYP--FSQAKEAFEKLEK-SHATGKV 341 (347)
T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCC----------------CCCCCCCEE--HHHHHHHHHHHHH-CCCCCEE
T ss_conf 50357754888999999999971866----------------388743015--4688999998875-5786418
No 426
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=64.18 E-value=7 Score=19.19 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=25.6
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 9872699998256678999999999899999973996599
Q gi|254780900|r 1 MAGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVV 40 (438)
Q Consensus 1 Msk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i 40 (438)
|.+..-|.|+|.|-+|..++-.|. +.|.++.|
T Consensus 1 M~~~~DV~IvGaGp~Gl~lA~~La--------~~G~~v~v 32 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALK--------DSDLRIAV 32 (405)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHH--------HCCCCEEE
T ss_conf 999876899991589999999998--------58997899
No 427
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=63.59 E-value=5.4 Score=19.95 Aligned_cols=62 Identities=19% Similarity=0.174 Sum_probs=32.8
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC--CCC--------CCH-HCCCHHHHHCCCCCC
Q ss_conf 999825667899999999989999997399659999982685200278--877--------102-207888984488998
Q gi|254780900|r 7 VGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGI--DCL--------RYE-WFDDPLIMAGEADID 75 (438)
Q Consensus 7 IgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~--~~~--------~~~-~~~d~~~li~~~~ID 75 (438)
|+|+|+|+||+.++-.|..+ +.--++. ..|.+.++.++. ++. ... -.+|+.++ .+.|
T Consensus 1 V~IIGaG~VG~~~A~~l~~~--------~l~~el~-L~Di~~~~a~g~a~Dl~~~~~~~~~~~~~~~~~~~~~---~daD 68 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK--------GLASELV-LVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADA---ADAD 68 (300)
T ss_pred CEEECCCHHHHHHHHHHHHC--------CCCCEEE-EECCCCCCCHHHHHHHHHCCCCCCCCEEECCCCHHHH---CCCC
T ss_conf 98989688999999999867--------9988799-9818998115688887725634688539827988996---7999
Q ss_pred EEEEC
Q ss_conf 99986
Q gi|254780900|r 76 VFVEL 80 (438)
Q Consensus 76 vVVEl 80 (438)
+||=.
T Consensus 69 vvVit 73 (300)
T cd00300 69 IVVIT 73 (300)
T ss_pred EEEEC
T ss_conf 99987
No 428
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent; InterPro: IPR011275 This entry contains bacterial and archaeal malate dehydrogenases, which convert malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterised , and have been used to determine members of this group. ; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=63.57 E-value=6.7 Score=19.31 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=37.4
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE-EECCCCCCCCCCC--------CCCH--HCCCHHHHHCCCC
Q ss_conf 699998256678999999999899999973996599999-8268520027887--------7102--2078889844889
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAI-SARDKNIDRGIDC--------LRYE--WFDDPLIMAGEAD 73 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i-~~r~~~k~~~~~~--------~~~~--~~~d~~~li~~~~ 73 (438)
.||.++|.|+||+..+-.|.++ ..+.++.+.-| ..-+.-+-+.++. ...+ =+.||.|-.+.
T Consensus 2 kKisvIGAGfvGaTTAf~lA~K------eLard~VLlDiPqvEg~pqGKALDmyEasPv~gFD~kvTGtnnYaDTAnS-- 73 (308)
T TIGR01763 2 KKISVIGAGFVGATTAFLLAEK------ELARDVVLLDIPQVEGVPQGKALDMYEASPVEGFDVKVTGTNNYADTANS-- 73 (308)
T ss_pred CEEEEECCCCCHHHHHHHHHHH------HHCCEEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCCHHHCCC--
T ss_conf 5589970686125899999867------40671689850555868886332211027766311236257870021188--
Q ss_pred CCEEE
Q ss_conf 98999
Q gi|254780900|r 74 IDVFV 78 (438)
Q Consensus 74 IDvVV 78 (438)
||||
T Consensus 74 -DivV 77 (308)
T TIGR01763 74 -DIVV 77 (308)
T ss_pred -CEEE
T ss_conf -3799
No 429
>PRK07045 putative monooxygenase; Reviewed
Probab=63.33 E-value=7.6 Score=18.90 Aligned_cols=32 Identities=31% Similarity=0.396 Sum_probs=24.9
Q ss_pred CCC-CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 987-2699998256678999999999899999973996599
Q gi|254780900|r 1 MAG-VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVV 40 (438)
Q Consensus 1 Msk-~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i 40 (438)
|++ +++|.|+|.|-+|..++-.|. +.|.++.|
T Consensus 1 m~~~~~dVlIvGaG~aGl~lA~~L~--------r~G~~v~v 33 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLG--------ARGHSVTV 33 (388)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHH--------HCCCCEEE
T ss_conf 9989985899992889999999998--------67998999
No 430
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=63.16 E-value=11 Score=17.68 Aligned_cols=197 Identities=18% Similarity=0.204 Sum_probs=97.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC--CCCCCCCCCCCHHCCCHHHHHCCCCCCEEEECCC
Q ss_conf 69999825667899999999989999997399659999982685--2002788771022078889844889989998648
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDK--NIDRGIDCLRYEWFDDPLIMAGEADIDVFVELIG 82 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~--~k~~~~~~~~~~~~~d~~~li~~~~IDvVVEliG 82 (438)
-+|+++|||.=|.+.+.-|+. .|+++.| + -|.. +.++...- .. -.-++.+.... -|+|.=|+.
T Consensus 18 k~iaViGYGsQG~AhAlNLrD--------SG~~V~v-g--lr~gs~S~~kA~~d-Gf-~v~~~~eA~~~--aDii~~L~P 82 (336)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRD--------SGVDVVV-G--LREGSKSWKKAEAD-GF-EVLTVAEAAKW--ADVIMILLP 82 (336)
T ss_pred CEEEEECCCCHHHHHHHHHHH--------CCCCEEE-E--ECCCCCCHHHHHHC-CC-EECCHHHHHHH--CCEEEEECC
T ss_conf 979997527076898855374--------4997799-9--79998039999987-99-43679999974--686654287
Q ss_pred CCCCCHHH----HHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 88851135----78888632702885041778876899998753139669960564530131899987641286203433
Q gi|254780900|r 83 GEDYPAYD----AVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILKNYVEYDEINRVYG 158 (438)
Q Consensus 83 g~~~pA~~----~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~~~l~~~~i~~i~G 158 (438)
|....+ .+..-|+.|+.+.-|-- ..-|+.. .--..++.+..=|-=|-|-+|=+.. +.|.-|-..-+
T Consensus 83 --D~~q~~vy~~~I~p~lk~G~~L~FaHG--FnIhy~~---I~pp~~vDVimVAPKgpG~~VR~~y---~~G~GvP~liA 152 (336)
T PRK05479 83 --DELQAEVYKEEIEPNLKEGAALAFAHG--FNIHFGQ---IVPPADVDVIMVAPKGPGHLVRREY---VEGGGVPCLIA 152 (336)
T ss_pred --HHHHHHHHHHHHHHHCCCCCEEEEECC--CHHCCCE---EEECCCCCEEEECCCCCCHHHHHHH---HCCCCEEEEEE
T ss_conf --577899999999854589976886144--3000560---4445897679988899976899998---63898048999
Q ss_pred EECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHH
Q ss_conf 31420000000010068778899887876176156532232117899999999999818855531000122320476740
Q gi|254780900|r 159 IINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHKIAILSAIAFGIDTSVEGVYCEGISNITLEDI 238 (438)
Q Consensus 159 IlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa~~~~g~~~~~~~v~~~gI~~i~~~di 238 (438)
|-+ ...|...+-||.-|...|-+-+-- +.+..|----+- .||.+. |.|-|+..+-..-+
T Consensus 153 V~q----------D~sG~A~~~alaya~~iG~~raGv------ieTTF~eEtetD-LfGEQ~----VLcGG~~~Li~agF 211 (336)
T PRK05479 153 VHQ----------DASGNAKDLALAYAKGIGGTRAGV------IETTFKEETETD-LFGEQA----VLCGGLTELIKAGF 211 (336)
T ss_pred EEE----------CCCHHHHHHHHHHHHHCCCCCCCE------EECCHHHHHHHH-HHHHHH----HHHCHHHHHHHHHH
T ss_conf 986----------887359999999998738776655------742559998876-244578----86243999999999
Q ss_pred HHHHHCCCE
Q ss_conf 347871985
Q gi|254780900|r 239 RGAADFGYC 247 (438)
Q Consensus 239 ~~a~~~g~~ 247 (438)
+.--+.||.
T Consensus 212 etLveaGy~ 220 (336)
T PRK05479 212 ETLVEAGYQ 220 (336)
T ss_pred HHHHHCCCC
T ss_conf 999984998
No 431
>PRK09181 aspartate kinase; Validated
Probab=62.69 E-value=12 Score=17.62 Aligned_cols=50 Identities=18% Similarity=0.247 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHC
Q ss_conf 8887489999998866995788882267787761359999210488999999998623
Q gi|254780900|r 362 NFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNG 419 (438)
Q Consensus 362 DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~ 419 (438)
..||+.+++-+.|++++|+|..+.|-. ++-...++ +.+.+.+.+++.|-.
T Consensus 414 ~~~gvaak~f~aL~~~~InI~~isqgs---seinIs~v-----V~~~d~~~Av~aLH~ 463 (476)
T PRK09181 414 AVPGILAKAVQALADAGINVLALHQSM---RQVNMQFV-----VDEDDYKEAICALHR 463 (476)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEECCC---CCCEEEEE-----ECHHHHHHHHHHHHH
T ss_conf 863499999999997899889996787---71569999-----858999999999999
No 432
>KOG3923 consensus
Probab=62.66 E-value=12 Score=17.62 Aligned_cols=46 Identities=20% Similarity=0.130 Sum_probs=31.4
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
Q ss_conf 8726999982566789999999998999999739965999998268520
Q gi|254780900|r 2 AGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI 50 (438)
Q Consensus 2 sk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k 50 (438)
.++.||+++|.|.+|-+.+-.|.+... ...-..+++.-+++|-..+
T Consensus 1 ~~~~~iaViGaGVIGlsTA~~i~~~~~---~~~ip~~~vtv~~Drf~e~ 46 (342)
T KOG3923 1 NKTPRIAVIGAGVIGLSTALCILELYH---SVLIPVAKVTVISDRFTED 46 (342)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHH---HCCCCCCEEEEECCCCCCC
T ss_conf 997608997477101568999998654---1268862278745778655
No 433
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=62.44 E-value=8.1 Score=18.72 Aligned_cols=188 Identities=16% Similarity=0.200 Sum_probs=92.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC-----------C--CCC-C-------CCCCCHHC
Q ss_conf 2699998256678999999999899999973996599999826852-----------0--027-8-------87710220
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKN-----------I--DRG-I-------DCLRYEWF 62 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~-----------k--~~~-~-------~~~~~~~~ 62 (438)
..+||++|.|++|+|.+.++.. .|.++.+.-+..-..+ + .++ + .+.....+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~--------~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~ 74 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFAL--------AGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPT 74 (307)
T ss_pred CCEEEEECCCCHHHHHHHHHHH--------CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
T ss_conf 4079997246020999999973--------49956999589899999999999999988862787745599997515255
Q ss_pred CCHHHHHCCCCCCEEEECCCCCCCCH-H-HHHHH--HHHCCEEEEEECHHHHHHHHHHHHHHHHHC----CCEEEEECCC
Q ss_conf 78889844889989998648888511-3-57888--863270288504177887689999875313----9669960564
Q gi|254780900|r 63 DDPLIMAGEADIDVFVELIGGEDYPA-Y-DAVRI--ALMRGCHVVTANKALIASHGKDLALLAQKN----NAILNFEAAV 134 (438)
Q Consensus 63 ~d~~~li~~~~IDvVVEliGg~~~pA-~-~~i~~--AL~~GkhVVTANKallA~~g~eL~~lA~~~----gv~l~~easV 134 (438)
.|+.+ -.+.|.|||++ .+... + ++... ++..---++..|---+ .-.+|.+..+.. |..|+--.-+
T Consensus 75 ~~~~~---l~~~DlVIEAv--~E~levK~~vf~~l~~~~~~~aIlASNTSsl--~it~ia~~~~rper~iG~HFfNP~~~ 147 (307)
T COG1250 75 TDLAA---LKDADLVIEAV--VEDLELKKQVFAELEALAKPDAILASNTSSL--SITELAEALKRPERFIGLHFFNPVPL 147 (307)
T ss_pred CCHHH---HCCCCEEEEEC--CCCHHHHHHHHHHHHHHCCCCCEEEECCCCC--CHHHHHHHHCCCHHEEEEECCCCCCC
T ss_conf 76656---63088788853--0159999999999886559885786226778--78999987379323798752698771
Q ss_pred C------CHH----HHHHHHHHHHHCCCCEEEEEEECCCHHHHEEHH-----------HCCC-CCHHHHHHHHHH-CCCC
Q ss_conf 5------301----318999876412862034333142000000001-----------0068-778899887876-1761
Q gi|254780900|r 135 A------GGI----PIIRILKNYVEYDEINRVYGIINGTCNYILSHM-----------NNLG-LSFQDCLEEARR-QGYA 191 (438)
Q Consensus 135 ~------ggi----Pii~~l~~~l~~~~i~~i~GIlnGT~nyIL~~m-----------~~~g-~~f~~al~~Aq~-lGya 191 (438)
+ .|. +++.++.+.. -++.+.-=+.|-+-+||.+++ ..+| .+++++=+-... +|+-
T Consensus 148 m~LVEvI~g~~T~~e~~~~~~~~~--~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~p 225 (307)
T COG1250 148 MPLVEVIRGEKTSDETVERVVEFA--KKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLP 225 (307)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HHCCCCCEEECCCCCEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
T ss_conf 105888168878999999999999--985998874267886125777899999999999808999999999998636997
Q ss_pred -CCCCCCCCCHHHHHHHH
Q ss_conf -56532232117899999
Q gi|254780900|r 192 -EGDATFDINGVDSSHKI 208 (438)
Q Consensus 192 -E~DP~~Di~G~Daa~Kl 208 (438)
=|=-..|+-|.|..+++
T Consensus 226 mGpf~l~D~~GlD~~~~i 243 (307)
T COG1250 226 MGPFELADLIGLDVMLHI 243 (307)
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 658888877718889999
No 434
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=62.41 E-value=12 Score=17.59 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=22.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 69999825667899999999989999997399659999982685
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDK 48 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~ 48 (438)
-+|.++|+|.+|+.+++.|. ..|+. -..+.|.+.
T Consensus 22 s~VlvvG~GGLG~~v~~~La--------~aGvg--~i~ivD~d~ 55 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLV--------LSGIG--SLTILDDRT 55 (197)
T ss_pred CCEEEECCCHHHHHHHHHHH--------HHCCC--EEEEEECCC
T ss_conf 95999887889999999999--------83798--699998991
No 435
>KOG2733 consensus
Probab=62.39 E-value=12 Score=17.59 Aligned_cols=158 Identities=18% Similarity=0.216 Sum_probs=83.6
Q ss_pred CCC-CEEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC----------CCCCCC-HHCCC---
Q ss_conf 987-26999982-566789999999998999999739965999998268520027----------887710-22078---
Q gi|254780900|r 1 MAG-VLKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRG----------IDCLRY-EWFDD--- 64 (438)
Q Consensus 1 Msk-~ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~----------~~~~~~-~~~~d--- 64 (438)
|+- ...+-|.| -|.-|+-+++-+.+.. ...+ +. .+++.||..|-+. .+++.. .++-|
T Consensus 1 M~~~~yDvVIyGASGfTG~yivee~v~~~----~~~~--~s-lavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n 73 (423)
T KOG2733 1 MAAIRYDVVIYGASGFTGKYIVEEAVSSQ----VFEG--LS-LAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSAN 73 (423)
T ss_pred CCCCEEEEEEECCCCCCCEEEHHHHHHHH----CCCC--CE-EEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCC
T ss_conf 98723359998156665302489886430----2467--54-78732788899999999863248886654389943788
Q ss_pred ---HHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHH--HHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf ---88984488998999864888851135788886327028850417788768--9999875313966996056453013
Q gi|254780900|r 65 ---PLIMAGEADIDVFVELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHG--KDLALLAQKNNAILNFEAAVAGGIP 139 (438)
Q Consensus 65 ---~~~li~~~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g--~eL~~lA~~~gv~l~~easV~ggiP 139 (438)
..++.. ..-+|+.+.|..-...-.++++|+++|.|-|--.-+|--.+- -..-++|+++||.+- .|+=-..||
T Consensus 74 ~~Sl~emak--~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYIV-saCGfDSIP 150 (423)
T KOG2733 74 EASLDEMAK--QARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYIV-SACGFDSIP 150 (423)
T ss_pred HHHHHHHHH--HHEEEEECCCCCEECCCHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHCCEEEE-EECCCCCCC
T ss_conf 789999986--41787751556312471899999875985331478879999998878777775573999-504667777
Q ss_pred H---HHHHHHHHHC--CCCEEEEEEEC-CCHHHHE
Q ss_conf 1---8999876412--86203433314-2000000
Q gi|254780900|r 140 I---IRILKNYVEY--DEINRVYGIIN-GTCNYIL 168 (438)
Q Consensus 140 i---i~~l~~~l~~--~~i~~i~GIln-GT~nyIL 168 (438)
. +.-++....| +.|.++--+.+ |++.|-|
T Consensus 151 aDlGv~f~~k~fdg~ln~VEsfl~Lh~~gp~G~sl 185 (423)
T KOG2733 151 ADLGVMFLRKNFDGVLNHVESFLQLHSKGPSGYSL 185 (423)
T ss_pred CCCEEEEEHHHCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 51001443633256488899898551567765532
No 436
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=62.36 E-value=6.6 Score=19.34 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.5
Q ss_pred EEEEEECCCHHHHHHHHHHHHH
Q ss_conf 6999982566789999999998
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKR 26 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~ 26 (438)
|||+++|+|.-|.++++.|.++
T Consensus 1 mKi~V~GlG~sG~s~a~~L~~~ 22 (401)
T PRK03815 1 MKISLFGYGKTTKALARFFVKN 22 (401)
T ss_pred CEEEEEEECHHHHHHHHHHHHC
T ss_conf 9399984777189999999948
No 437
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p; InterPro: IPR006285 This is a family of eukaryotic proteins found in animals, plants, and yeasts that includes Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. .
Probab=61.86 E-value=5.5 Score=19.92 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=16.3
Q ss_pred HHHCCCCEEEEEEECCCHHHHEEHHHCCCCCHHHHHHH
Q ss_conf 64128620343331420000000010068778899887
Q gi|254780900|r 147 YVEYDEINRVYGIINGTCNYILSHMNNLGLSFQDCLEE 184 (438)
Q Consensus 147 ~l~~~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~al~~ 184 (438)
.|-|==|+.|.-+=|||-.| =+=.+|.=-.|+|++.-
T Consensus 366 ~L~GwGvRhItFvDngkVs~-sNPVRQsL~nFeDcl~g 402 (689)
T TIGR01381 366 VLLGWGVRHITFVDNGKVSY-SNPVRQSLYNFEDCLEG 402 (689)
T ss_pred HHHCCCCEEEEEEECCEEEE-CCCCCCCCCCHHHHHCC
T ss_conf 87426621578864574540-27746876433645137
No 438
>PRK02047 hypothetical protein; Provisional
Probab=61.85 E-value=12 Score=17.52 Aligned_cols=76 Identities=9% Similarity=0.091 Sum_probs=62.1
Q ss_pred HHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCE--EEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCC
Q ss_conf 3446532799992488874899999988669957--8888226778776135999921048899999999862383000
Q gi|254780900|r 348 YEEEKEYFIRLTIRNFEGILDKITSQMSDFNISL--RLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAI 424 (438)
Q Consensus 348 ~~~~~~yYLRl~v~DkpGVLa~It~ilak~~ISI--esi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~ 424 (438)
-+..+.|=+...-...|+-...|..++.+|.=.+ +++..+ ...++++..+-++-..+++.++++.-.+|...+.|+
T Consensus 11 ieFPC~fpiKVmG~a~~~~~~~V~~iv~~h~p~~~~~~v~~r-~S~~G~Y~Svtv~i~ats~~QLd~iY~~L~~~~~Vk 88 (91)
T PRK02047 11 IEYPSDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEER-PSSGGNYTGLTITVRATSREQLDNIYRALTGHPMVK 88 (91)
T ss_pred EECCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEC-CCCCCEEEEEEEEEEECCHHHHHHHHHHHHCCCCEE
T ss_conf 767899948999758710789999999997799980337871-499986899999999899999999999984199879
No 439
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.09 E-value=12 Score=17.43 Aligned_cols=33 Identities=18% Similarity=0.453 Sum_probs=15.6
Q ss_pred EEEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 433314200000000100687788998878761761
Q gi|254780900|r 156 VYGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYA 191 (438)
Q Consensus 156 i~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGya 191 (438)
|-||=-|+..| |+++.. ..++++|.+-.+--|.
T Consensus 89 ilGiN~G~lGF-L~~~~~--~~~~~~l~~i~~g~y~ 121 (290)
T PRK01911 89 ILGINTGRLGF-LADVSP--EEIEETIDELLQGKYT 121 (290)
T ss_pred EEEEECCCCEE-EECCCH--HHHHHHHHHHHCCCCE
T ss_conf 89994488137-503688--8999999999869978
No 440
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase; InterPro: IPR003710 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway . Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE . ApbA and PanE are allelic .; GO: 0008677 2-dehydropantoate 2-reductase activity, 0006206 pyrimidine base metabolic process.
Probab=59.69 E-value=7.8 Score=18.85 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=17.1
Q ss_pred EEEEECCCHHHHHHHHHHHH
Q ss_conf 99998256678999999999
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQK 25 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~ 25 (438)
||+|+|.|-||+-+.-.|.+
T Consensus 1 ~i~i~G~GA~G~l~ga~L~~ 20 (332)
T TIGR00745 1 KIAIIGAGAVGSLYGARLAR 20 (332)
T ss_pred CEEEEECCHHHHHHHHHHHH
T ss_conf 96899517889999999873
No 441
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit; InterPro: IPR004643 L-serine dehydratase, also called serine deaminase, catalyses the conversion of L-serine and water to pyruvate and ammonia during gluconeogenesis from serine. The enzyme forms a heterooctamer of four alpha chains and four beta chains. This family describes the beta chain of an iron-sulphur-dependent L-serine dehydratase of the Firmicutes and Deinococcus radiodurans. A fairly deep split in a UPGMA tree separates members of this family of beta chains from the homologous region of single chain forms such as found in Escherichia coli. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.; GO: 0003941 L-serine ammonia-lyase activity, 0006094 gluconeogenesis.
Probab=59.53 E-value=6.8 Score=19.26 Aligned_cols=146 Identities=19% Similarity=0.227 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHH------------------HHHHHCCHHH------HHHHHHCCCEEEEEEEEEECCCC
Q ss_conf 99999999998188555310001------------------2232047674------03478719858741013313678
Q gi|254780900|r 205 SHKIAILSAIAFGIDTSVEGVYC------------------EGISNITLED------IRGAADFGYCIKFLAMARRKGKG 260 (438)
Q Consensus 205 a~Kl~ILa~~~~g~~~~~~~v~~------------------~gI~~i~~~d------i~~a~~~g~~ikli~~~~~~~~~ 260 (438)
|+|+.=.|+-.|+..++.=.+.. -||=.-++.| ++.|++.|-.+..
T Consensus 25 A~~I~~VA~S~~~~~~~~~~~~l~GSFA~TyKGHGTD~A~~GG~L~F~~~D~RIKT~~~~A~~~G~~~~F---------- 94 (208)
T TIGR00719 25 AAKIARVARSLVSREYERVIVSLYGSFAETYKGHGTDVALVGGLLDFDTDDDRIKTAIELAKAKGLDIIF---------- 94 (208)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCHHHCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEE----------
T ss_conf 7668665433214885679999860523213676745357723037798631578889999853982799----------
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEE-EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 35699998641677300036654168983113100-58972687666102068899999974177776556666783100
Q gi|254780900|r 261 IIRYVYPVLLKYDSVMALVDGITNAVVIETNGLGK-LTMTGPGAGGSATASAVLGDICSIAKTNTQKSVSWALGKESSSF 339 (438)
Q Consensus 261 i~~~V~P~li~~~~~la~v~g~~Nai~i~~~~~g~-~~~~G~GAG~~~TAsaV~sDli~i~~~~~~~~~~~~~~~~~~~~ 339 (438)
+|. -++|.-||=. +=.+.++.-|+ .-+.|..-|+. -++|..
T Consensus 95 ---~~~-~~~~n~HPN~-------~KI~~S~~~GEe~~~~G~SIGGG---------~~~I~~------------------ 136 (208)
T TIGR00719 95 ---RVE-DLVDNVHPNS-------VKIVISDEKGEELELIGISIGGG---------KIKIVE------------------ 136 (208)
T ss_pred ---EEE-CCCCCCCCCE-------EEEEEECCCCCEEEEEEEEECCC---------EEEEEE------------------
T ss_conf ---850-2678748970-------59998658997257878752687---------379985------------------
Q ss_pred CCCCCCCHHHCCCCE--EEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECC
Q ss_conf 234438853446532--7999924888748999999886699578888226778776135999921048
Q gi|254780900|r 340 SVIHCDGVYEEEKEY--FIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVS 406 (438)
Q Consensus 340 ~~~~~~~~~~~~~~y--YLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~ 406 (438)
+..++-..+.- -+-+.-.||-|++|-++++|++..++|+++.-+. ++-..++.+|=++-
T Consensus 137 ----~NG~~~~l~G~~~~IL~~~~~~~G~I~~V~~~L~~~~~N~~~l~~~~----~~~~~~~~lT~E~D 197 (208)
T TIGR00719 137 ----LNGIELRLRGEYSAILLVYNDKFGVIAYVASLLAKFEINVESLEVKK----KDLTNLVLLTVEVD 197 (208)
T ss_pred ----ECCEEEEEECCCCEEEEEECCCCCEEHHHHHHHCCCCCCHHHHHHHH----HCCCEEEEEEEEEC
T ss_conf ----16569997078647999866874230010244503510111345444----30032899999816
No 442
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=59.36 E-value=13 Score=17.23 Aligned_cols=83 Identities=14% Similarity=0.144 Sum_probs=43.0
Q ss_pred EECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEEECCCCCCCCH
Q ss_conf 98256678999999999899999973996599999826852002788771022078889844889989998648888511
Q gi|254780900|r 9 VAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFVELIGGEDYPA 88 (438)
Q Consensus 9 iiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVVEliGg~~~pA 88 (438)
|+|.|.-|+.+++.+.++. +.++.+..|.+...............++........+.++++ .+|.. ...
T Consensus 1 IiGaGG~ak~v~d~i~~~~---------~~~iigf~DD~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~I-aIG~~-~~R 69 (197)
T cd03360 1 IIGAGGHARVVADILEADS---------GYEVVGFLDDDPELKGTEGLGLPVGLDELLLLYPPPDDEFVV-AIGDN-KLR 69 (197)
T ss_pred CCCCCHHHHHHHHHHHHCC---------CCEEEEEEECCCCCCCCCCCCEEECCCHHHHHCCCCCCEEEE-ECCCH-HHH
T ss_conf 9902899999999998689---------965999996981007732277044682788733677778999-83987-999
Q ss_pred HHHHHHHHHCCEEE
Q ss_conf 35788886327028
Q gi|254780900|r 89 YDAVRIALMRGCHV 102 (438)
Q Consensus 89 ~~~i~~AL~~GkhV 102 (438)
+++.++..+.|...
T Consensus 70 ~ki~~~l~~~~~~~ 83 (197)
T cd03360 70 RKLAEKLLAAGYRF 83 (197)
T ss_pred HHHHHHHHHCCCEE
T ss_conf 99999998689967
No 443
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=59.05 E-value=2.9 Score=21.82 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=10.7
Q ss_pred CCCCCHHHHHHHHHHCC
Q ss_conf 06877889988787617
Q gi|254780900|r 173 NLGLSFQDCLEEARRQG 189 (438)
Q Consensus 173 ~~g~~f~~al~~Aq~lG 189 (438)
.+|.++++|+++-.+.-
T Consensus 111 REgi~~~~a~~~~~~RE 127 (179)
T COG1102 111 REGIDVDEALAETVERE 127 (179)
T ss_pred HCCCCHHHHHHHHHHHH
T ss_conf 60898999999999988
No 444
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.18 E-value=14 Score=17.10 Aligned_cols=129 Identities=21% Similarity=0.240 Sum_probs=62.4
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC-----CCCCCCCCHHCC-C-HHHHHCCCCCCE
Q ss_conf 269999825667899999999989999997399659999982685200-----278877102207-8-889844889989
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNID-----RGIDCLRYEWFD-D-PLIMAGEADIDV 76 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~-----~~~~~~~~~~~~-d-~~~li~~~~IDv 76 (438)
.=+|.++|+|.-|.++++.|.++ |.. + .+.|.+...+ +... ....+.. . ....+ +++|+
T Consensus 7 ~k~vlV~GlG~sG~a~a~~L~~~--------G~~--V-~~~D~~~~~~~~~~l~~~~-~~~~~~~g~~~~~~~--~~~d~ 72 (501)
T PRK02006 7 RPMVLVLGLGESGLAMARWCARH--------GCR--L-RVADTREAPPNLAALQAEG-IDAEFVGGAFDPALL--DGVEL 72 (501)
T ss_pred CCEEEEEEECHHHHHHHHHHHHC--------CCE--E-EEEECCCCCCCHHHHHHCC-CCCEEECCCCCHHHH--CCCCE
T ss_conf 98399983368899999999978--------984--9-9998999986199998608-981897788986784--68999
Q ss_pred EEECCCCCC--CCH-HHHHHHHHHCCEEEEEECHHH------------------HH---HHHH-----HHHHHHHHCCCE
Q ss_conf 998648888--511-357888863270288504177------------------88---7689-----999875313966
Q gi|254780900|r 77 FVELIGGED--YPA-YDAVRIALMRGCHVVTANKAL------------------IA---SHGK-----DLALLAQKNNAI 127 (438)
Q Consensus 77 VVEliGg~~--~pA-~~~i~~AL~~GkhVVTANKal------------------lA---~~g~-----eL~~lA~~~gv~ 127 (438)
||=- .|+. .|. ..++.+|-++|..|++ .=.+ +| .+|+ -+..+.++.|.
T Consensus 73 vV~S-PGI~p~~p~~~~~l~~A~~~gi~i~~-eiel~~~~~~~~~~~~~~~~~iIaVTGTnGKTTTt~li~~iL~~~g~- 149 (501)
T PRK02006 73 VALS-PGLSPLEPALAALLAAARERGIPVWG-ELELFAQALAALGASRGYAPKVLAITGTNGKTTTTSLTGLLCERAGK- 149 (501)
T ss_pred EEEC-CEECCCCCCHHHHHHHHHHCCCCEEE-HHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCC-
T ss_conf 9989-90088885431999999987995876-89999988763022235687489993899668799999999997699-
Q ss_pred EEEECCCCC--HHHHHHHHHHHHHCCC
Q ss_conf 996056453--0131899987641286
Q gi|254780900|r 128 LNFEAAVAG--GIPIIRILKNYVEYDE 152 (438)
Q Consensus 128 l~~easV~g--giPii~~l~~~l~~~~ 152 (438)
.+.+|| |.|++..+.+.+..+.
T Consensus 150 ---~~~~~GNIG~p~l~~l~~~~~~~~ 173 (501)
T PRK02006 150 ---KVAVAGNISPAALDKLAEAIDAAA 173 (501)
T ss_pred ---CEEEECCCCCHHHHHHHHHHCCCC
T ss_conf ---746525646102677876422577
No 445
>TIGR02992 ectoine_eutC ectoine utilization protein EutC; InterPro: IPR014334 Members of this entry are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, Pseudomonas putida and Sinorhizobium meliloti 1021, where it is known to be induced by ectoine). Members belong to the ornithine cyclodeaminase/mu-crystallin family..
Probab=58.07 E-value=2.9 Score=21.91 Aligned_cols=82 Identities=22% Similarity=0.226 Sum_probs=49.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEEEECCCCCCCCCCC-------CCCHHCCCHHHHHCCCCCCEE
Q ss_conf 9999825667899999999989999997-39965999998268520027887-------710220788898448899899
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDL-DQHSFVVSAISARDKNIDRGIDC-------LRYEWFDDPLIMAGEADIDVF 77 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~-~g~~i~i~~i~~r~~~k~~~~~~-------~~~~~~~d~~~li~~~~IDvV 77 (438)
.++|+|.|.=.+ | .|+.. .-.+++-..|=+|+..|.+.... -.....+|+.+-+... ||+
T Consensus 131 ~~a~~GAG~QAr-----L-----QL~AL~LvRdI~~ariWAR~~akAe~~A~~L~~~~G~~v~a~td~~~A~~~A--DI~ 198 (326)
T TIGR02992 131 VVAILGAGMQAR-----L-----QLEALTLVRDIRSARIWARDSAKAEALALQLSSELGIDVTAATDVRAALSGA--DII 198 (326)
T ss_pred HHHHHCCCHHHH-----H-----HHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHCCCC--CEE
T ss_conf 776752556789-----9-----9999863152144321025567899999998874690687504768623668--879
Q ss_pred EECCCCCCCCHHHHH--HHHHHCCEEEEE
Q ss_conf 986488885113578--888632702885
Q gi|254780900|r 78 VELIGGEDYPAYDAV--RIALMRGCHVVT 104 (438)
Q Consensus 78 VEliGg~~~pA~~~i--~~AL~~GkhVVT 104 (438)
|= .+|+.+-+ ...|+-|.||+-
T Consensus 199 vT-----tTP~~~Pvl~a~wL~pGqh~tA 222 (326)
T TIGR02992 199 VT-----TTPSETPVLKAEWLEPGQHVTA 222 (326)
T ss_pred EE-----CCCCCCCCHHHHHCCCCCEEEE
T ss_conf 87-----4879873020733678878986
No 446
>KOG0781 consensus
Probab=57.77 E-value=14 Score=17.05 Aligned_cols=83 Identities=18% Similarity=0.206 Sum_probs=40.5
Q ss_pred HHHHHHHHCC--CEEEEEEEE-------------EECCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEE----EE-
Q ss_conf 7403478719--858741013-------------313678356999986416773000366541689831131----00-
Q gi|254780900|r 236 EDIRGAADFG--YCIKFLAMA-------------RRKGKGIIRYVYPVLLKYDSVMALVDGITNAVVIETNGL----GK- 295 (438)
Q Consensus 236 ~di~~a~~~g--~~ikli~~~-------------~~~~~~i~~~V~P~li~~~~~la~v~g~~Nai~i~~~~~----g~- 295 (438)
.||..|++.+ |+|-++|+- ++..+++.+ ||-.-++|.+ |.---..++.+++ |.
T Consensus 367 rdI~~ar~~krPYvi~fvGVNGVGKSTNLAKIayWLlqNkfrV-----lIAACDTFRs--GAvEQLrtHv~rl~~l~~~~ 439 (587)
T KOG0781 367 RDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRV-----LIAACDTFRS--GAVEQLRTHVERLSALHGTM 439 (587)
T ss_pred HHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCEE-----EEEECCCHHH--HHHHHHHHHHHHHHHHCCCH
T ss_conf 9999987468975999982147665132999999998578369-----9986243124--47899999999998745520
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 58972687666102068899999974177776
Q gi|254780900|r 296 LTMTGPGAGGSATASAVLGDICSIAKTNTQKS 327 (438)
Q Consensus 296 ~~~~G~GAG~~~TAsaV~sDli~i~~~~~~~~ 327 (438)
+-++-+|=|.+ ++.|.-.-|..||+.....
T Consensus 440 v~lfekGYgkd--~a~vak~AI~~a~~~gfDv 469 (587)
T KOG0781 440 VELFEKGYGKD--AAGVAKEAIQEARNQGFDV 469 (587)
T ss_pred HHHHHHHCCCC--HHHHHHHHHHHHHHCCCCE
T ss_conf 48886104778--2899999999998669878
No 447
>pfam00585 Thr_dehydrat_C C-terminal regulatory domain of Threonine dehydratase. Threonine dehydratases pfam00291 all contain a carboxy terminal region. This region may have a regulatory role. Some members contain two copies of this region. This family is homologous to the pfam01842 domain.
Probab=57.63 E-value=14 Score=17.04 Aligned_cols=69 Identities=14% Similarity=0.142 Sum_probs=47.6
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCC
Q ss_conf 653279999248887489999998866995788882267787761359999210488999999998623830
Q gi|254780900|r 351 EKEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSD 422 (438)
Q Consensus 351 ~~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~ 422 (438)
....|++++.-.+||.|.+-.+.++..+ +|-.+.-.. .+...++|++=-......+..+.++.|+...+
T Consensus 8 ~~E~~~~v~iPErpGal~~Fl~~l~~~~-~ITeF~YR~--~~~~~a~VlvGi~~~~~~e~~~l~~~L~~~gy 76 (91)
T pfam00585 8 GLEALFAVEFPERPGALLKFLDLLGGRN-NITLFHYRK--HGAKNGSILVGVQLSQASDLDEFIERLEKLGY 76 (91)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCC-CEEEEEEEC--CCCCCEEEEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 8558999988888749999999829955-555899854--58970359999997988899999999997599
No 448
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=57.54 E-value=14 Score=17.03 Aligned_cols=140 Identities=17% Similarity=0.164 Sum_probs=64.8
Q ss_pred EEEEEECCCHHHHHH-HHHHHHHH--HHHHHHCCCCEEEEEEEECCCCCC-CCCCCCCCHHCCCH-HHHHCCCCCCEEEE
Q ss_conf 699998256678999-99999989--999997399659999982685200-27887710220788-89844889989998
Q gi|254780900|r 5 LKVGVAGLGTVGSAL-IRSIQKRE--GRFKDLDQHSFVVSAISARDKNID-RGIDCLRYEWFDDP-LIMAGEADIDVFVE 79 (438)
Q Consensus 5 ikIgiiG~G~VG~~~-~~~l~~~~--~~l~~~~g~~i~i~~i~~r~~~k~-~~~~~~~~~~~~d~-~~li~~~~IDvVVE 79 (438)
+||.++|-..||+.- ++.+..+. +.+....|.++..+.+...+.... .-.+..+..-+.+. ..... +.|+++=
T Consensus 1 lKivvvG~~~vGKTSLi~r~~~~~f~~~y~pTig~~~~~k~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~--~ad~~il 78 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYK--DTQGVLL 78 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHH--HCCEEEE
T ss_conf 98999995995689999999639999985897655777999999999999999989997647899999987--4778899
Q ss_pred CCCCCCCCHHH----HHHHHHHCC------E---EEEEECHHHHH----HHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
Q ss_conf 64888851135----788886327------0---28850417788----7689999875313966996056453013189
Q gi|254780900|r 80 LIGGEDYPAYD----AVRIALMRG------C---HVVTANKALIA----SHGKDLALLAQKNNAILNFEAAVAGGIPIIR 142 (438)
Q Consensus 80 liGg~~~pA~~----~i~~AL~~G------k---hVVTANKallA----~~g~eL~~lA~~~gv~l~~easV~ggiPii~ 142 (438)
+-.-++.-.++ |+....+.. + -++-+||.=+. ...++..++|+++|..+ ||.|..-|.=|-.
T Consensus 79 vydit~~~Sf~~l~~w~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~-~E~Sak~g~~V~e 157 (168)
T cd04119 79 VYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKY-FETSACTGEGVNE 157 (168)
T ss_pred EECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCEE-EEECCCCCCCHHH
T ss_conf 950897444899999999999982453456686299985403444257889999999999869989-9988577908899
Q ss_pred HHHHH
Q ss_conf 99876
Q gi|254780900|r 143 ILKNY 147 (438)
Q Consensus 143 ~l~~~ 147 (438)
..+..
T Consensus 158 ~F~~l 162 (168)
T cd04119 158 MFQTL 162 (168)
T ss_pred HHHHH
T ss_conf 99999
No 449
>KOG0024 consensus
Probab=57.43 E-value=14 Score=17.01 Aligned_cols=69 Identities=23% Similarity=0.274 Sum_probs=34.2
Q ss_pred CCCCCHHHH-HHH-------HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHC
Q ss_conf 068778899-887-------876176156532232117899999999999818855531000122320476740347871
Q gi|254780900|r 173 NLGLSFQDC-LEE-------ARRQGYAEGDATFDINGVDSSHKIAILSAIAFGIDTSVEGVYCEGISNITLEDIRGAADF 244 (438)
Q Consensus 173 ~~g~~f~~a-l~~-------Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa~~~~g~~~~~~~v~~~gI~~i~~~di~~a~~~ 244 (438)
.++.||+|. |-| |-++|=--+--+-=|-|.-.--=+++|+.-|||.. +|- |.++.+..++.|+++
T Consensus 141 Pd~vs~eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~----~VV---i~d~~~~Rle~Ak~~ 213 (354)
T KOG0024 141 PDNVSFEEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGAS----DVV---ITDLVANRLELAKKF 213 (354)
T ss_pred CCCCCHHHCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCC----CEE---EEECCHHHHHHHHHH
T ss_conf 8987632130146202212033324766688689976768999999999874987----289---960677799999982
Q ss_pred CCEE
Q ss_conf 9858
Q gi|254780900|r 245 GYCI 248 (438)
Q Consensus 245 g~~i 248 (438)
|.+.
T Consensus 214 Ga~~ 217 (354)
T KOG0024 214 GATV 217 (354)
T ss_pred CCEE
T ss_conf 9757
No 450
>PRK06091 membrane protein FdrA; Validated
Probab=57.24 E-value=14 Score=16.99 Aligned_cols=275 Identities=16% Similarity=0.152 Sum_probs=123.8
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEE--ECHHHHHHHHHHHHHHHHHCCCEEE---EECCCCCHHHH--HHH
Q ss_conf 8899899986488885113578888632702885--0417788768999987531396699---60564530131--899
Q gi|254780900|r 71 EADIDVFVELIGGEDYPAYDAVRIALMRGCHVVT--ANKALIASHGKDLALLAQKNNAILN---FEAAVAGGIPI--IRI 143 (438)
Q Consensus 71 ~~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVT--ANKallA~~g~eL~~lA~~~gv~l~---~easV~ggiPi--i~~ 143 (438)
.|+.++.+=-+.| ..|..-.++||++|.||-. =|- .+.. =.+|.++|+++|+-++ .-+++-+|+|+ -+.
T Consensus 115 ~p~AnlalISVpG--~yAa~EA~~AL~~gl~VmlFSDNV-s~ed-E~~LK~~A~ekGLlvMGPDCGTaII~GvpLaFANv 190 (555)
T PRK06091 115 LPDANLALISVAG--EYAAELAEQALDRNLNVMMFSDNV-TLED-EIQLKTRAREKGLLVMGPDCGTAMIAGTPLAFANV 190 (555)
T ss_pred CCCCCEEEEECCH--HHHHHHHHHHHHCCCCEEEECCCC-CHHH-HHHHHHHHHHCCCEEECCCCCHHHHCCCCHHHCCC
T ss_conf 8999879996170--777999999998799479975999-7789-99999999877938888986313416851242044
Q ss_pred HHHH---H---HCCCCEEEE--------EEEC--CCHHHHEEHHHCCCCC----------------------------HH
Q ss_conf 9876---4---128620343--------3314--2000000001006877----------------------------88
Q gi|254780900|r 144 LKNY---V---EYDEINRVY--------GIIN--GTCNYILSHMNNLGLS----------------------------FQ 179 (438)
Q Consensus 144 l~~~---l---~~~~i~~i~--------GIln--GT~nyIL~~m~~~g~~----------------------------f~ 179 (438)
.+.+ + +|.-++++. ||-+ ||=.==|++ +=.|.+ -+
T Consensus 191 V~~G~IGIVgASGTG~QEvs~~Id~~G~GVshaIGtGGRDLs~-eVGGis~l~al~aL~~Dp~T~vIvlISKPPa~eV~~ 269 (555)
T PRK06091 191 MPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSR-EVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRL 269 (555)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHH-HHCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH
T ss_conf 5688712795166546689999987178732220377740256-753378999999985599832999965899789999
Q ss_pred HHHHHHHHCC------CCCCCCCCCCCH--------HHHHHHHHHHHHHHH--CCCCCCCCCHHHHH-HHCCHH------
Q ss_conf 9988787617------615653223211--------789999999999981--88555310001223-204767------
Q gi|254780900|r 180 DCLEEARRQG------YAEGDATFDING--------VDSSHKIAILSAIAF--GIDTSVEGVYCEGI-SNITLE------ 236 (438)
Q Consensus 180 ~al~~Aq~lG------yaE~DP~~Di~G--------~Daa~Kl~ILa~~~~--g~~~~~~~v~~~gI-~~i~~~------ 236 (438)
.++..++..| |--.+|...-++ -++|++.+-|++..- ...+.+..-+++|. +.=|+-
T Consensus 270 kVl~~~~~~~KPVV~~FLG~~p~~~~e~~~~~a~tL~eaA~~Av~l~~~~~~~~~~~~~~~~~irGLysGGTLa~EA~~l 349 (555)
T PRK06091 270 KIINAMKATGKPVVALFLGYTPAVAREENVWFASTLDEAARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLAAEAAGL 349 (555)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCEEEEEECCCHHHHHHHHH
T ss_conf 99999984299889997279976567676412442999999987440552011025687777379995371299999999
Q ss_pred -------HHHHHHHCCCEEEEEEEE--EECCCCC-EEEEEEEEEECC--CCCC-CCCCCCCEEEEEEEEEEEEEEEECCC
Q ss_conf -------403478719858741013--3136783-569999864167--7300-03665416898311310058972687
Q gi|254780900|r 237 -------DIRGAADFGYCIKFLAMA--RRKGKGI-IRYVYPVLLKYD--SVMA-LVDGITNAVVIETNGLGKLTMTGPGA 303 (438)
Q Consensus 237 -------di~~a~~~g~~ikli~~~--~~~~~~i-~~~V~P~li~~~--~~la-~v~g~~Nai~i~~~~~g~~~~~G~GA 303 (438)
.......+|+.++--+.. ...++.+ .-|=||+.-|.. .-|+ -.+...-+|.+. | ++-|.||
T Consensus 350 l~~~l~~~~~~~~~~g~~l~s~gH~iiDlGDD~fT~GRPHPMIDPs~R~e~i~~~a~Dp~v~VILl-D-----vVLGyGa 423 (555)
T PRK06091 350 LAGHLGVEADDEHHHGMMLDADGHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQVRVLLL-D-----VVIGFGA 423 (555)
T ss_pred HHHHHCCCCCCCCCCCCHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE-E-----EEECCCC
T ss_conf 998709988853354411105895698657742357898888682779999999734997228999-8-----7532689
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEEEE---CCCCCHHHHHHHHHHHCCCC
Q ss_conf 666102068899999974177776556666783100234438853446532799992---48887489999998866995
Q gi|254780900|r 304 GGSATASAVLGDICSIAKTNTQKSVSWALGKESSSFSVIHCDGVYEEEKEYFIRLTI---RNFEGILDKITSQMSDFNIS 380 (438)
Q Consensus 304 G~~~TAsaV~sDli~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yYLRl~v---~DkpGVLa~It~ilak~~IS 380 (438)
-.+|-+ .+.+-+.-++..... -.+.++--+| ..-|--+++-.+.|.+.|+-
T Consensus 424 h~DPag--~L~paI~~a~~a~~~------------------------gr~l~vVa~V~GT~~DPQ~~~~Q~~~L~~AGv~ 477 (555)
T PRK06091 424 TADPAA--SLVSAWQKACAARSD------------------------NQPLYAIATVTGTERDPQCRSQQIATLEDAGIA 477 (555)
T ss_pred CCCHHH--HHHHHHHHHHHHHHC------------------------CCCEEEEEEEECCCCCCCCHHHHHHHHHHCCEE
T ss_conf 998489--999999999975533------------------------896389999807888973899999999968959
Q ss_pred EE
Q ss_conf 78
Q gi|254780900|r 381 LR 382 (438)
Q Consensus 381 Ie 382 (438)
+-
T Consensus 478 V~ 479 (555)
T PRK06091 478 VV 479 (555)
T ss_pred EE
T ss_conf 97
No 451
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.81 E-value=15 Score=16.94 Aligned_cols=192 Identities=18% Similarity=0.170 Sum_probs=107.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCC-CCCCEEEECCC
Q ss_conf 26999982566789999999998999999739965999998268520027887710220788898448-89989998648
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGE-ADIDVFVELIG 82 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~-~~IDvVVEliG 82 (438)
+|||+++..|.-|.-++..|..+. ..-.++++-.- .. .-..+.+++.+++.. ++.|++|-..-
T Consensus 1 ~mki~vlt~g~yG~R~~~nl~~~~--------f~~~~v~v~~~----Pe----~~~~fie~P~~~Lp~~~e~Di~va~~l 64 (224)
T COG1810 1 MMKILVLTDGEYGKRAVNNLACKG--------FKNQFVAVKEY----PE----ELPDFIEEPEDLLPKLPEADIVVAYGL 64 (224)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHC--------CCCCEEEEEEC----CC----CCCCHHHCHHHHCCCCCCCCEEEEECC
T ss_conf 928999960620489987676521--------55315898736----63----253001277976678888778999514
Q ss_pred CCCCCHHHHHHHHHHCCEEEE--EECHHHHHHHHHHHHHHHHHCCCEEEEECCCCC----HHHHHHHHHHH---------
Q ss_conf 888511357888863270288--504177887689999875313966996056453----01318999876---------
Q gi|254780900|r 83 GEDYPAYDAVRIALMRGCHVV--TANKALIASHGKDLALLAQKNNAILNFEAAVAG----GIPIIRILKNY--------- 147 (438)
Q Consensus 83 g~~~pA~~~i~~AL~~GkhVV--TANKallA~~g~eL~~lA~~~gv~l~~easV~g----giPii~~l~~~--------- 147 (438)
..| .-+.+.+.|.++|..-+ -+-..- +. .++|.+...+.|+.+--+-.-|. +.|.|+-.-+-
T Consensus 65 HPD-l~~~L~e~~~~~~~~alIvp~~~~~-g~-rkqL~~~~~~~g~e~~~p~p~C~Le~~~~p~i~~F~e~FG~P~veve 141 (224)
T COG1810 65 HPD-LLLALPEKAAEGGVKALIVPAEPPE-GL-RKQLKEFCEELGVEFEAPEPFCSLEPNENPHIDEFAERFGKPEVEVE 141 (224)
T ss_pred CCC-HHHHHHHHHHHCCCCEEEEECCCCH-HH-HHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEEE
T ss_conf 850-7899999998579617998457973-48-99999874223605536876556788888579999997199559999
Q ss_pred HHCCCCEEE---EEEECCCHHHHEEHHHCCCCCHHH-HHHHHHH--CCC-----CCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 412862034---333142000000001006877889-9887876--176-----15653223211789999999999981
Q gi|254780900|r 148 VEYDEINRV---YGIINGTCNYILSHMNNLGLSFQD-CLEEARR--QGY-----AEGDATFDINGVDSSHKIAILSAIAF 216 (438)
Q Consensus 148 l~~~~i~~i---~GIlnGT~nyIL~~m~~~g~~f~~-al~~Aq~--lGy-----aE~DP~~Di~G~Daa~Kl~ILa~~~~ 216 (438)
+.+++|..| ++-.=|.|-|+.-+|. |.++.| ...+|-. .-| -|-|+.. |---.||..-+.+-||
T Consensus 142 v~~~~i~~V~V~RsaPCGsT~~vAk~l~--G~~~~de~~~~~~~~~~~YPC~Asm~~d~~~---~d~~~h~AG~i~~eAv 216 (224)
T COG1810 142 VENGKIKDVDVLRSAPCGSTWYVAKRLV--GVSVKDELPVKAGLAHQHYPCRASMERDFEL---GDTKLHKAGYIHKEAV 216 (224)
T ss_pred ECCCEEEEEEEEECCCCCHHHHHHHHHC--CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHH
T ss_conf 6399189998873488720999999843--8513344467888875038754650225554---6215668899999999
Q ss_pred CCC
Q ss_conf 885
Q gi|254780900|r 217 GID 219 (438)
Q Consensus 217 g~~ 219 (438)
..-
T Consensus 217 ~~a 219 (224)
T COG1810 217 ERA 219 (224)
T ss_pred HHH
T ss_conf 998
No 452
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=56.69 E-value=15 Score=16.93 Aligned_cols=87 Identities=24% Similarity=0.366 Sum_probs=44.8
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC------------------C--CCCCCCCCCCHHCC
Q ss_conf 269999825667899999999989999997399659999982685------------------2--00278877102207
Q gi|254780900|r 4 VLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDK------------------N--IDRGIDCLRYEWFD 63 (438)
Q Consensus 4 ~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~------------------~--k~~~~~~~~~~~~~ 63 (438)
..+||++|+|-||--++-.+.++ | +.+.++ |-+. . .+......+...|+
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~--------G--~~ViG~-DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTt 77 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASA--------G--FKVIGV-DINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATT 77 (436)
T ss_pred CEEEEEECCCCCCHHHHHHHHHC--------C--CCEEEE-ECCHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCEEEC
T ss_conf 52899982464457889999876--------9--955757-578899888757864254686889999998639715756
Q ss_pred CHHHHHCCCCCCEEEECCC----CCCCCHHHHHHHH-------HHCCEEEEE
Q ss_conf 8889844889989998648----8885113578888-------632702885
Q gi|254780900|r 64 DPLIMAGEADIDVFVELIG----GEDYPAYDAVRIA-------LMRGCHVVT 104 (438)
Q Consensus 64 d~~~li~~~~IDvVVEliG----g~~~pA~~~i~~A-------L~~GkhVVT 104 (438)
|+.++- +.|+++=+.. +...|-.++++.| |+.|--||.
T Consensus 78 d~~~l~---~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIl 126 (436)
T COG0677 78 DPEELK---ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVIL 126 (436)
T ss_pred CHHHCC---CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 855625---4888999935776789998848999999999975677888999
No 453
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=56.67 E-value=12 Score=17.50 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=17.7
Q ss_pred EEEEEECCCHHHHHHHHHHHH
Q ss_conf 699998256678999999999
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQK 25 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~ 25 (438)
+||.|+|+|.||+-++-.|.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~ 21 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAK 21 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHH
T ss_conf 959998787899999999985
No 454
>PRK08774 consensus
Probab=55.91 E-value=9.7 Score=18.17 Aligned_cols=32 Identities=25% Similarity=0.252 Sum_probs=25.6
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 9872699998256678999999999899999973996599
Q gi|254780900|r 1 MAGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVV 40 (438)
Q Consensus 1 Msk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i 40 (438)
|+++.-|.|+|.|-||..++-.|.+ .|.++.+
T Consensus 1 M~~~~DVlIVGgGpvGl~lA~~La~--------~G~~v~l 32 (402)
T PRK08774 1 MTHPHDVLIVGGGLVGSSLAIALDR--------IGLDVGL 32 (402)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHC--------CCCCEEE
T ss_conf 9899878999916999999999966--------8997899
No 455
>TIGR01915 npdG NADPH-dependent F420 reductase; InterPro: IPR010185 Members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase..
Probab=55.48 E-value=10 Score=18.10 Aligned_cols=199 Identities=14% Similarity=0.097 Sum_probs=102.8
Q ss_pred EEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC-----------C-CCHH--CCCHHHHH
Q ss_conf 6999982-566789999999998999999739965999998268520027887-----------7-1022--07888984
Q gi|254780900|r 5 LKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDC-----------L-RYEW--FDDPLIMA 69 (438)
Q Consensus 5 ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~-----------~-~~~~--~~d~~~li 69 (438)
||||++| .|..|.|++=.|-.+. ..+ .|.+-+| -|..|+.+|.+.-.. . ..++ .+|.+.-
T Consensus 1 mkIAvLGGTGdqG~GLALRlA~~g-lmP--eG~~~~i-IIGSR~~EkA~EaA~ka~e~l~~~G~d~~i~~~G~~N~~AA- 75 (233)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG-LMP--EGVDNEI-IIGSRDKEKAEEAAAKALEELGDQGVDRDIKVEGAENEEAA- 75 (233)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCC-CCC--CCCCCCE-EEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHH-
T ss_conf 967884488840256999998707-787--8777555-77048845699999999999970895136257548877887-
Q ss_pred CCCCCCEEEECCCCCCCCH------HHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEE--EECCCCCHHHHH
Q ss_conf 4889989998648888511------35788886327028850417788768999987531396699--605645301318
Q gi|254780900|r 70 GEADIDVFVELIGGEDYPA------YDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILN--FEAAVAGGIPII 141 (438)
Q Consensus 70 ~~~~IDvVVEliGg~~~pA------~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~--~easV~ggiPii 141 (438)
..-||||=. .|. .+-++.-|+++|=||.+-- ||+. .-.+++.+++ .|.||+. -+=
T Consensus 76 --~~aDVVil~-----vP~~~~~~~l~~~~~~L~~dK~Vis~~V-Pl~~-------~Ig~~~~~y~~P~eGSaA~--~~a 138 (233)
T TIGR01915 76 --KRADVVILA-----VPFDHVLKTLESIKDELEADKIVISPVV-PLAS-------AIGGKGLRYLPPEEGSAAE--LVA 138 (233)
T ss_pred --HHCCEEEEE-----ECCHHHHHHHHHHHHHHCCCCEEEECCC-CCCH-------HHCCCCCCCCCCCCCHHHH--HHH
T ss_conf --238978998-----4222247899999998518928996478-7500-------0024430026873102899--999
Q ss_pred HHHHHHHHCCCCEEEEEEECCCHHHHEEHHHCCCCC--------HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 999876412862034333142000000001006877--------889988787617615653223211789999999999
Q gi|254780900|r 142 RILKNYVEYDEINRVYGIINGTCNYILSHMNNLGLS--------FQDCLEEARRQGYAEGDATFDINGVDSSHKIAILSA 213 (438)
Q Consensus 142 ~~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~~~g~~--------f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa~ 213 (438)
+.++ ++=.++-+=|+==|--.|....++..+ =+++.+-+++| +.+++|+=+
T Consensus 139 ~~lp-----eqg~~VvaAFhN~~A~~L~D~~~~~~D~D~LV~g~de~A~~~V~eL-------A~~I~G~Ra--------- 197 (233)
T TIGR01915 139 KLLP-----EQGSKVVAAFHNISAAKLKDVVDEEVDCDVLVCGDDEEAKKVVAEL-------AEKIDGLRA--------- 197 (233)
T ss_pred HHCC-----CCCCEEHHHHCCCCHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHH-------HCCCCCCCC---------
T ss_conf 8533-----2675010212132445404400374334536626877789999998-------403894324---------
Q ss_pred HHHCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCEEEEEE
Q ss_conf 981885553100012232047674034787198587410
Q gi|254780900|r 214 IAFGIDTSVEGVYCEGISNITLEDIRGAADFGYCIKFLA 252 (438)
Q Consensus 214 ~~~g~~~~~~~v~~~gI~~i~~~di~~a~~~g~~ikli~ 252 (438)
.++-++. + -.-|+.|||.=|..++..+ -+|.+|
T Consensus 198 -~d~G~Le--n--A~~~EslTPLLInLn~~n~-d~~~~G 230 (233)
T TIGR01915 198 -IDAGPLE--N--ARIVESLTPLLINLNRRNK-DLKDAG 230 (233)
T ss_pred -CCCCCCH--H--HHHHHHHHHHHHHHHHHHH-HHHCCC
T ss_conf -1267714--5--7888777777888877512-452357
No 456
>PRK10537 voltage-gated potassium channel; Provisional
Probab=55.39 E-value=15 Score=16.79 Aligned_cols=13 Identities=8% Similarity=0.125 Sum_probs=4.4
Q ss_pred EECCCHHHHHHHH
Q ss_conf 9825667899999
Q gi|254780900|r 9 VAGLGTVGSALIR 21 (438)
Q Consensus 9 iiG~G~VG~~~~~ 21 (438)
+||+|..|+.+++
T Consensus 209 ICGyG~~g~~v~~ 221 (356)
T PRK10537 209 ICGHSPLAINTYL 221 (356)
T ss_pred EECCCHHHHHHHH
T ss_conf 9898837999999
No 457
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=55.22 E-value=15 Score=16.77 Aligned_cols=88 Identities=16% Similarity=0.202 Sum_probs=41.7
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC----CCCCCCCCC---------CHHCCCHHHHHCCCC
Q ss_conf 9998256678999999999899999973996599999826852----002788771---------022078889844889
Q gi|254780900|r 7 VGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKN----IDRGIDCLR---------YEWFDDPLIMAGEAD 73 (438)
Q Consensus 7 IgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~----k~~~~~~~~---------~~~~~d~~~li~~~~ 73 (438)
|+|+|+|.||+-++-.|.+ .|.++.+ + +|... ++.++.+.. ...+++. -....
T Consensus 1 I~IiGaGaiG~~~a~~L~~--------ag~~V~l--v-~R~~~~~~i~~~G~~~~~~~~~~~~~~~~~~~~~---~~~~~ 66 (150)
T pfam02558 1 IAILGAGAVGSLYGARLAR--------AGHDVTL--I-ARGRHLEAIRENGLRITSPGGERTVPPPVATSAS---EELGP 66 (150)
T ss_pred CEEECCCHHHHHHHHHHHH--------CCCEEEE--E-ECCCHHHHHHHCCEEEEECCCCEEEECCEECCCH---HHCCC
T ss_conf 9999668999999999997--------7992899--9-7563678877497699947983898074103865---76588
Q ss_pred CCEEEECCCCCCC-CHHHHHHHHHHCCEEEEEECHH
Q ss_conf 9899986488885-1135788886327028850417
Q gi|254780900|r 74 IDVFVELIGGEDY-PAYDAVRIALMRGCHVVTANKA 108 (438)
Q Consensus 74 IDvVVEliGg~~~-pA~~~i~~AL~~GkhVVTANKa 108 (438)
+|+++=++=..+. .+.+.++..+...-+||+.--.
T Consensus 67 ~D~viv~vKa~~~~~al~~l~~~l~~~t~iv~lqNG 102 (150)
T pfam02558 67 ADLVIVAVKAYQTAEALEDLAPLLGPNTVVLLLQNG 102 (150)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 679999722458899999988652888389994258
No 458
>PRK05925 aspartate kinase; Provisional
Probab=55.21 E-value=15 Score=16.77 Aligned_cols=263 Identities=12% Similarity=0.103 Sum_probs=112.0
Q ss_pred CCHHHHHHHHHH-----HHHCCCCEEEEEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH----
Q ss_conf 530131899987-----64128620343331420000000010068778899887876176156532232117899----
Q gi|254780900|r 135 AGGIPIIRILKN-----YVEYDEINRVYGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSS---- 205 (438)
Q Consensus 135 ~ggiPii~~l~~-----~l~~~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa---- 205 (438)
+-+.|.+...+. .+..+.+-=+.|-.-.|.+--.+-+-..|.+|+.++ -|..|+--|-.=--||+|+-+|
T Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~sA~~-la~al~A~~~~IwTDV~Gv~taDPri 222 (440)
T PRK05925 144 LRATPDLALMQTNWHELNLQEDAIYIMQGFIGANSSGKTTVLGRGGSDFSASL-IAELCKAREVRIYTDVNGIYTMDPKI 222 (440)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECCCCCCHHHHH-HHHHCCCCEEEEECCCCCEECCCCCC
T ss_conf 33033588888889987522796899616300189997776169973089999-99961784999831657337479986
Q ss_pred ----HHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCC
Q ss_conf ----9999999998188555310001223204767403478719858741013313678356999986416773000366
Q gi|254780900|r 206 ----HKIAILSAIAFGIDTSVEGVYCEGISNITLEDIRGAADFGYCIKFLAMARRKGKGIIRYVYPVLLKYDSVMALVDG 281 (438)
Q Consensus 206 ----~Kl~ILa~~~~g~~~~~~~v~~~gI~~i~~~di~~a~~~g~~ikli~~~~~~~~~i~~~V~P~li~~~~~la~v~g 281 (438)
+++- ++.|.. ..+...-|-.-+.|.-++.|.+.|-.++....-+....|--..-.+.-.+.. .
T Consensus 223 V~~A~~i~---~lsy~E---a~ELa~~GAkVlHprtv~pa~~~~Ipi~i~nt~~p~~~GT~I~~~~~~~~~~-------~ 289 (440)
T PRK05925 223 IKDAQLIP---ELSFEE---MQNLASFGAKVLHPPMLKPCVRAGIPIFVTSTFDVTKGGTWIYASDKEVSYE-------P 289 (440)
T ss_pred CCCCCCCC---CCCHHH---HHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECCCCCCCC-------C
T ss_conf 88885666---308999---9999976964048999999998399589967899999953898557665568-------8
Q ss_pred CCCEEEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCC-------CCCCCCCCCCCCCCCCCCCHHH---CC
Q ss_conf 5416898311310058972687666102068899999974177776-------5566667831002344388534---46
Q gi|254780900|r 282 ITNAVVIETNGLGKLTMTGPGAGGSATASAVLGDICSIAKTNTQKS-------VSWALGKESSSFSVIHCDGVYE---EE 351 (438)
Q Consensus 282 ~~Nai~i~~~~~g~~~~~G~GAG~~~TAsaV~sDli~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~---~~ 351 (438)
.-.+|....+. .-+.+.+.+-|. + -++.++.+........ ....+-...............+ ..
T Consensus 290 ~Vk~ia~~~~~-~i~~i~~~~~~~-~----~~~~vf~~l~~~~i~~~~i~s~~~~vs~ti~~~~~~~~~~~~l~~~l~~~ 363 (440)
T PRK05925 290 RIKALSLKQNQ-ALWSVDYNSLGL-V----RLEKVLGILRSLGIVPGLVMAQNSGVYFTTDDDDISEEYIQHLTDALSAF 363 (440)
T ss_pred CEEEEEECCCC-EEEEEECCCCCC-H----HHHHHHHHHHHCCCCEEEEEECCCEEEEEECHHHHHHHHHHHHHHHHHHC
T ss_conf 77999971870-699996578850-6----69999999997599338997247539999770365699999999998626
Q ss_pred CCEE-----EEEEE----CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCC
Q ss_conf 5327-----99992----48887489999998866995788882267787761359999210488999999998623830
Q gi|254780900|r 352 KEYF-----IRLTI----RNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSD 422 (438)
Q Consensus 352 ~~yY-----LRl~v----~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~ 422 (438)
.+.. =.+++ .-.||+.+++.+.|++++|+|..+-|- +....+| +.+++.+++++.|.+ .+
T Consensus 364 ~~v~~~~~~a~VsiVG~gm~~~~i~~~~~~~L~~~~I~i~~i~~S-----e~~Is~v-----V~~~d~~~Av~aLH~-~f 432 (440)
T PRK05925 364 GTVSCEGPLALITMIGAKLASWKVVTTFTEKLRGYQTPVFCWCQS-----DMALNLV-----VNEELAVAVTELLHN-DY 432 (440)
T ss_pred CCEEECCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECC-----CCEEEEE-----ECHHHHHHHHHHHHH-HH
T ss_conf 957970894899998999897699999999986389818999868-----8889999-----819999999999999-99
Q ss_pred CCCCCE
Q ss_conf 004735
Q gi|254780900|r 423 AIRYSC 428 (438)
Q Consensus 423 v~~~~~ 428 (438)
+.++.+
T Consensus 433 f~~~~~ 438 (440)
T PRK05925 433 VKQKFS 438 (440)
T ss_pred HCCCCC
T ss_conf 636861
No 459
>KOG2304 consensus
Probab=54.94 E-value=7.3 Score=19.06 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=23.7
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 98726999982566789999999998999999739965999
Q gi|254780900|r 1 MAGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVS 41 (438)
Q Consensus 1 Msk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~ 41 (438)
|.++=+|+|+|.|.+|+|.+++- ...|.++.+.
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~--------a~sg~~V~l~ 40 (298)
T KOG2304 8 MAEIKNVAIVGAGQMGSGIAQVA--------ATSGLNVWLV 40 (298)
T ss_pred CCCCCCEEEECCCCCCHHHHHHH--------HHCCCCEEEE
T ss_conf 04566247875664320399998--------8519946985
No 460
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit; InterPro: IPR014214 Members of this entry represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation..
Probab=54.60 E-value=16 Score=16.70 Aligned_cols=115 Identities=23% Similarity=0.311 Sum_probs=63.9
Q ss_pred ECCCHHHHHH-HHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCC--------------
Q ss_conf 8256678999-9999998999999739965999998268520027887710220788898448899--------------
Q gi|254780900|r 10 AGLGTVGSAL-IRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADI-------------- 74 (438)
Q Consensus 10 iG~G~VG~~~-~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~I-------------- 74 (438)
+|||--||+- ++.+. ..+++......+|..|...+..-...--.....|.+-.+++-..+-|
T Consensus 3 IGfglTGSHCt~~~~~---p~le~L~~~GAev~P~~s~~V~~T~TrFG~~~dwi~~~E~iTG~~~i~ti~~AEP~GP~~~ 79 (188)
T TIGR02852 3 IGFGLTGSHCTLEAVM---PQLEKLVEEGAEVTPIVSETVQTTDTRFGDGADWIKKIEEITGKKAINTIVEAEPFGPKVP 79 (188)
T ss_pred EEEECCCCCCCHHHHH---HHHHHHHHCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCC
T ss_conf 4311362011667898---9999999669848888630004356556861889999886306311300345545976975
Q ss_pred -CEEEE--CCCC---------CCCCHHHHHHHHHHCCEEEE---EECHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf -89998--6488---------88511357888863270288---5041778876899998753139669
Q gi|254780900|r 75 -DVFVE--LIGG---------EDYPAYDAVRIALMRGCHVV---TANKALIASHGKDLALLAQKNNAIL 128 (438)
Q Consensus 75 -DvVVE--liGg---------~~~pA~~~i~~AL~~GkhVV---TANKallA~~g~eL~~lA~~~gv~l 128 (438)
|++|= |||- +|.|-.=-.++-|+|+|.|| |-|=|| =..+.-|..|-..+|.+|
T Consensus 80 LD~mviaP~TGNsmsKlANA~tDspVLMAAKA~lRN~~PVvLa~sTNDaL-GlNa~NL~~Ll~~KNIyF 147 (188)
T TIGR02852 80 LDVMVIAPLTGNSMSKLANAITDSPVLMAAKATLRNNKPVVLAISTNDAL-GLNAVNLMRLLNTKNIYF 147 (188)
T ss_pred CCEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC-CHHHHHHHHHHHHCCEEE
T ss_conf 33688778862138998421589777887787751789789875034501-132899999975148331
No 461
>PRK04998 hypothetical protein; Provisional
Probab=54.59 E-value=16 Score=16.70 Aligned_cols=79 Identities=9% Similarity=0.003 Sum_probs=60.9
Q ss_pred CCHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCC
Q ss_conf 88534465327999924888748999999886699578888226778776135999921048899999999862383000
Q gi|254780900|r 345 DGVYEEEKEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCPHQEENSQEFSVFMITHKVSGKLIRDAIECFNGKSDAI 424 (438)
Q Consensus 345 ~~~~~~~~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~~~~~~~~~~~IViiTh~~~e~~i~~ai~~i~~l~~v~ 424 (438)
...-+..+.|=+.+.-...|+-...|..++.+|.=.-.+... .+.+++.+..+-+.-...++.++++.-..|.+.+.|+
T Consensus 7 d~LieFPC~ypiKVmG~~~~~f~~~V~~iv~~h~p~d~~~~~-r~SskG~Y~Svtv~i~a~s~~QL~~iY~~L~~~~~Vk 85 (88)
T PRK04998 7 DELLEFPCSFTFKVMGLARPELVDQVVEVVQRHAPGDYTPTV-KPSSKGNYHSVSITITATSIEQVETLYEELAKIEGVR 85 (88)
T ss_pred HHHEECCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCEE
T ss_conf 642647899818999728701889999999987788778414-2588983799999999879999999999973499879
No 462
>pfam07991 IlvN Acetohydroxy acid isomeroreductase, catalytic domain. Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.
Probab=54.47 E-value=16 Score=16.69 Aligned_cols=156 Identities=15% Similarity=0.114 Sum_probs=82.4
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC--CCCCCCCCCHHCCCHHHHHCCCCCCEEEEC
Q ss_conf 726999982566789999999998999999739965999998268520--027887710220788898448899899986
Q gi|254780900|r 3 GVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI--DRGIDCLRYEWFDDPLIMAGEADIDVFVEL 80 (438)
Q Consensus 3 k~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k--~~~~~~~~~~~~~d~~~li~~~~IDvVVEl 80 (438)
|--+|+++|||.=|.+.+.-|+. .|+++. |.-|..++ ++...- .. -.-+..+.... -|+|.=|
T Consensus 3 k~k~iaViGYGsQG~AhAlNLrD--------SG~~V~---vglr~~s~S~~kA~~d-Gf-~v~~~~eA~~~--aDiim~L 67 (165)
T pfam07991 3 KGKKIAVIGYGSQGHAHALNLRD--------SGVNVI---VGLRPGSKSWEKAKKD-GF-EVYTVAEAVKK--ADVVMIL 67 (165)
T ss_pred CCCEEEEEEECCHHHHHHHHHHH--------CCCCEE---EEECCCCHHHHHHHHC-CC-CCCCHHHHHHH--CCEEEEE
T ss_conf 79989999346164888723053--------499789---9978998679999978-97-00489999865--7899983
Q ss_pred CCCCCCCHH----HHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 488885113----5788886327028850417788768999987531396699605645301318999876412862034
Q gi|254780900|r 81 IGGEDYPAY----DAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILKNYVEYDEINRV 156 (438)
Q Consensus 81 iGg~~~pA~----~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~~~l~~~~i~~i 156 (438)
+. |.... +.+..-|+.|+.+.-|-- ..-|+. ..--..++.+..=|-=|-|-.+=+.. +.|.-|-..
T Consensus 68 ~P--D~~q~~iy~~~I~p~lk~G~~L~FaHG--FnI~y~---~I~pp~dvdVimVAPKgPG~~VR~~y---~~G~GvP~l 137 (165)
T pfam07991 68 LP--DEVQAEVYEKEIAPNLKEGAALAFAHG--FNIHFG---QIKPPKDVDVIMVAPKGPGHLVRREY---EEGGGVPAL 137 (165)
T ss_pred CC--CHHHHHHHHHHHHHHCCCCCEEEECCC--CEEEEC---CEEECCCCCEEEECCCCCCHHHHHHH---HCCCCEEEE
T ss_conf 79--777899999989865789977997157--577741---07646998689988899974799986---559983689
Q ss_pred EEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 3331420000000010068778899887876176156
Q gi|254780900|r 157 YGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEG 193 (438)
Q Consensus 157 ~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~ 193 (438)
-+|-+- ..|..++-+|.-|...|-+-+
T Consensus 138 iAV~QD----------~sG~A~~~alayA~aiG~~ra 164 (165)
T pfam07991 138 IAVHQD----------ASGKAKDLALAYAKGIGGTRA 164 (165)
T ss_pred EEEEEC----------CCCCHHHHHHHHHHHCCCCCC
T ss_conf 999988----------997199999999987178788
No 463
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating; InterPro: IPR006113 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) , . Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved . The protein is a homodimer in which the monomers act independently : each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet . NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket . This model does not specify whether the cofactor is NADP only, NAD only, or both.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt.
Probab=53.89 E-value=7.1 Score=19.13 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=33.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC--------CCCCCHHCCCHHHHHCCCC
Q ss_conf 9999825667899999999989999997399659999982685200278--------8771022078889844889
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGI--------DCLRYEWFDDPLIMAGEAD 73 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~--------~~~~~~~~~d~~~li~~~~ 73 (438)
.||++|++.+|+-++--+..| |. . ++|..|+.+|.+.+ ++....-..|+...|+.|.
T Consensus 1 diGviGLAVMG~NLaLN~~d~--------GF--~-V~VyNRt~~Ktd~fl~~~~~gk~i~g~~~ieeFV~~Le~PR 65 (480)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH--------GF--T-VAVYNRTPEKTDEFLKERAKGKKIVGAYSIEEFVQSLERPR 65 (480)
T ss_pred CCCEEEECHHHHHHHHHHHHC--------CC--C-EEEEECCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 951586041357899988746--------98--2-79972684799999860378885334326799998506887
No 464
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=52.73 E-value=13 Score=17.39 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=18.1
Q ss_pred EEEEEECC-CHHHHHHHHHHHH
Q ss_conf 69999825-6678999999999
Q gi|254780900|r 5 LKVGVAGL-GTVGSALIRSIQK 25 (438)
Q Consensus 5 ikIgiiG~-G~VG~~~~~~l~~ 25 (438)
|||.|+|. |+||+.++-.|.+
T Consensus 1 ~KV~IiGA~G~IG~~la~~l~~ 22 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIAS 22 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHC
T ss_conf 9899989997899999999972
No 465
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=51.79 E-value=14 Score=17.04 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.2
Q ss_pred EEEEEECCCHHHHHHHHHHHH
Q ss_conf 699998256678999999999
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQK 25 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~ 25 (438)
|||.|+|.|-+|.+.+-.|.+
T Consensus 1 m~VvIIGaGi~G~stA~~La~ 21 (416)
T PRK00711 1 MRVVVLGSGVVGVTSAWYLAR 21 (416)
T ss_pred CEEEEECCHHHHHHHHHHHHH
T ss_conf 979999944999999999996
No 466
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=51.70 E-value=17 Score=16.39 Aligned_cols=128 Identities=15% Similarity=0.164 Sum_probs=56.7
Q ss_pred CCEEEEEECCCHHHHHHH-HHHHHHHHHHHHHC----CCCEEEEEEEECCCCCC-CCCCCCCCHHC-CCH-HHHHCCCCC
Q ss_conf 726999982566789999-99999899999973----99659999982685200-27887710220-788-898448899
Q gi|254780900|r 3 GVLKVGVAGLGTVGSALI-RSIQKREGRFKDLD----QHSFVVSAISARDKNID-RGIDCLRYEWF-DDP-LIMAGEADI 74 (438)
Q Consensus 3 k~ikIgiiG~G~VG~~~~-~~l~~~~~~l~~~~----g~~i~i~~i~~r~~~k~-~~~~~~~~~~~-~d~-~~li~~~~I 74 (438)
+.+||.++|-+.||+.-+ ..+.. ..+...+ |.++....+-..+.... .-.+..+..-+ ... ..... +.
T Consensus 1 ~~~Kiv~lGd~~VGKTsli~r~~~--~~F~~~~~~Tig~d~~~k~i~v~~~~v~l~iwDtaG~e~~~~s~~~~~~~--~a 76 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCA--GRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYR--NV 76 (170)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHC--CCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHC--CC
T ss_conf 969999999799779999999953--98899878863078789999999999999999778853056777899845--77
Q ss_pred CEEEECCCCCCCCHH----HHHHHHHHC--CEE---EEEECHHHHHH----HHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 899986488885113----578888632--702---88504177887----68999987531396699605645
Q gi|254780900|r 75 DVFVELIGGEDYPAY----DAVRIALMR--GCH---VVTANKALIAS----HGKDLALLAQKNNAILNFEAAVA 135 (438)
Q Consensus 75 DvVVEliGg~~~pA~----~~i~~AL~~--Gkh---VVTANKallA~----~g~eL~~lA~~~gv~l~~easV~ 135 (438)
|.++=+-.-++...+ .|+...-+. +.+ |+-+||.=+.. ..+|-.++|+++|.. +||.|.-
T Consensus 77 ~~~ilvydvt~~~Sf~~~~~w~~~i~~~~~~~~~p~vlVGNK~DL~~~r~Vs~~e~~~~a~~~~~~-~~E~SAK 149 (170)
T cd04115 77 HAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMP-LFETSAK 149 (170)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHCCCCHHHHHHHHHHCCCE-EEEECCC
T ss_conf 357999504747679999999999998658889979999998213411787999999999977999-9998889
No 467
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=51.55 E-value=18 Score=16.38 Aligned_cols=51 Identities=24% Similarity=0.377 Sum_probs=27.2
Q ss_pred EEEECHH--HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8850417--78876899998753139669960564530131899987641286203433
Q gi|254780900|r 102 VVTANKA--LIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILKNYVEYDEINRVYG 158 (438)
Q Consensus 102 VVTANKa--llA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~~~l~~~~i~~i~G 158 (438)
|||+|-. +.|..-+++.+.-++... .++.|+||+-.++..+.+-++.++.|
T Consensus 41 vVt~N~e~v~~A~~dp~~~~~l~~Adl------v~pDG~giVwa~r~~~~~~~~eRV~G 93 (246)
T PRK03692 41 LVAINAEKLLTAEDNPEVRELINAAEY------KYADGISVVRSIRKKYPQAQVSRVAG 93 (246)
T ss_pred EEEECHHHHHHHCCCHHHHHHHHHCCE------ECCCCHHHHHHHHHHCCCCCCCCCCH
T ss_conf 999788999886209999999983896------67798999999997079888775271
No 468
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=50.81 E-value=17 Score=16.45 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=21.0
Q ss_pred CCC-CEEEEEECCCHHHHHHHHHHHH
Q ss_conf 987-2699998256678999999999
Q gi|254780900|r 1 MAG-VLKVGVAGLGTVGSALIRSIQK 25 (438)
Q Consensus 1 Msk-~ikIgiiG~G~VG~~~~~~l~~ 25 (438)
|++ ...|.|+|.|-||..++-.|.+
T Consensus 1 M~~~~~DV~IvG~G~vGl~lAl~La~ 26 (391)
T PRK08020 1 MTNQPTEIAIVGGGMVGGALALGLAQ 26 (391)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHH
T ss_conf 99999848999936999999999986
No 469
>PRK07589 ornithine cyclodeaminase; Validated
Probab=50.43 E-value=18 Score=16.26 Aligned_cols=84 Identities=12% Similarity=0.066 Sum_probs=38.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC----CCC--CCHHCCCHHHHHCCCCCCEEEE
Q ss_conf 9999825667899999999989999997399659999982685200278----877--1022078889844889989998
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGI----DCL--RYEWFDDPLIMAGEADIDVFVE 79 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~----~~~--~~~~~~d~~~li~~~~IDvVVE 79 (438)
.++|+|+|.-....++-+ ... .+++-+.+.+|+..+...+ ... .....++..+.+.. .|||+-
T Consensus 131 ~l~iIGtG~QA~~Q~~A~-------~~v--r~i~~V~v~~r~~~~a~~~a~~l~~~g~~v~~~~s~~eAv~~--ADIIvT 199 (346)
T PRK07589 131 TMALIGNGAQSEFQALAF-------KAL--LGIEEIRLYDIDPAATAKLARNLAGPGLRIVRCRSVAEAVEG--ADIITT 199 (346)
T ss_pred EEEEECCCHHHHHHHHHH-------HHH--CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHC--CCEEEE
T ss_conf 699974708899999999-------985--898689998288799999999987269808994999999721--988887
Q ss_pred CCCCCCCCHHH-H-HHHHHHCCEEEE
Q ss_conf 64888851135-7-888863270288
Q gi|254780900|r 80 LIGGEDYPAYD-A-VRIALMRGCHVV 103 (438)
Q Consensus 80 liGg~~~pA~~-~-i~~AL~~GkhVV 103 (438)
++... +++ + --..++.|.||-
T Consensus 200 aT~s~---~~~Pil~~~~v~pGtHIn 222 (346)
T PRK07589 200 VTADK---ANATILTPDMIEPGMHIN 222 (346)
T ss_pred ECCCC---CCCCCCCHHHCCCCCEEE
T ss_conf 11477---888602387759995798
No 470
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=50.37 E-value=18 Score=16.25 Aligned_cols=99 Identities=20% Similarity=0.275 Sum_probs=47.5
Q ss_pred EEEECC-CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC--C---------CCCCHHCCCHHHHHCCCCC
Q ss_conf 999825-667899999999989999997399659999982685200278--8---------7710220788898448899
Q gi|254780900|r 7 VGVAGL-GTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGI--D---------CLRYEWFDDPLIMAGEADI 74 (438)
Q Consensus 7 IgiiG~-G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~--~---------~~~~~~~~d~~~li~~~~I 74 (438)
|+|+|. |+||+.++-.|..+.. ..--++ ...|.+.++.++. + ......++|..+-+. +.
T Consensus 1 V~IIGA~G~VG~~~a~~l~~~~~------~~~~el-~L~Di~~~~~~g~a~Dl~~~~~~~~~~~v~~~~~~~~~~~--da 71 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSV------LLAIEL-VLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFK--DA 71 (263)
T ss_pred CEEECCCCHHHHHHHHHHHHCCC------CCCCEE-EEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHC--CC
T ss_conf 98987797799999999982899------999889-9995898720879999985452357873997487389837--99
Q ss_pred CEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHH
Q ss_conf 899986488885113578888632702885041778876899998753
Q gi|254780900|r 75 DVFVELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQ 122 (438)
Q Consensus 75 DvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~ 122 (438)
|+||=. .|. |.++ =.........|...+...++.+.+.+.
T Consensus 72 DvVVit-ag~--~~k~-----g~~R~dll~~N~~I~~~i~~~i~~~~p 111 (263)
T cd00650 72 DVVIIT-AGV--GRKP-----GMGRLDLLKRNVPIVKEIGDNIEKYSP 111 (263)
T ss_pred CEEEEE-CCC--CCCC-----CCCHHHHHHCHHHHHHHHHHHHHHCCC
T ss_conf 899990-577--8899-----987656640328899999888873299
No 471
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=50.27 E-value=18 Score=16.24 Aligned_cols=54 Identities=11% Similarity=0.056 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHH--HHHHCCCEEEEEEEEE
Q ss_conf 21178999999999998188555310001223204767403--4787198587410133
Q gi|254780900|r 199 INGVDSSHKIAILSAIAFGIDTSVEGVYCEGISNITLEDIR--GAADFGYCIKFLAMAR 255 (438)
Q Consensus 199 i~G~Daa~Kl~ILa~~~~g~~~~~~~v~~~gI~~i~~~di~--~a~~~g~~ikli~~~~ 255 (438)
|+--|.|.-. +++..+-...-......|-+.+|..|+. ..+.+|+.|++.....
T Consensus 169 V~~~DiA~va---a~~L~~~~~~~~~~~ltGpe~lt~~eiA~~ls~vlGr~V~y~~v~~ 224 (285)
T TIGR03649 169 VSADDIARVA---YRALTDKVAPNTDYVVLGPELLTYDDVAEILSRVLGRKITHVKLTE 224 (285)
T ss_pred CCHHHHHHHH---HHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCH
T ss_conf 5587899999---9997497768977998688657999999999998799227885999
No 472
>KOG1368 consensus
Probab=50.17 E-value=13 Score=17.27 Aligned_cols=54 Identities=26% Similarity=0.417 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHCCCEE------EEECCCCCHHHHHHHH------HHHHH---CCCCEEEEEEECCCHHHH
Q ss_conf 876899998753139669------9605645301318999------87641---286203433314200000
Q gi|254780900|r 111 ASHGKDLALLAQKNNAIL------NFEAAVAGGIPIIRIL------KNYVE---YDEINRVYGIINGTCNYI 167 (438)
Q Consensus 111 A~~g~eL~~lA~~~gv~l------~~easV~ggiPii~~l------~~~l~---~~~i~~i~GIlnGT~nyI 167 (438)
-++-.++.++|+++|+.+ .|.|+|+-|.|+=+.- .-+|+ |..|- -|+=|.-.||
T Consensus 174 le~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPVG---SViVG~k~FI 242 (384)
T KOG1368 174 LEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPVG---SVIVGSKDFI 242 (384)
T ss_pred HHHHHHHHHHHHCCCCEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCC---CEEECCHHHH
T ss_conf 99999999999615971533626665578771998999987632424355355788740---1787528899
No 473
>PRK05854 short chain dehydrogenase; Provisional
Probab=49.77 E-value=16 Score=16.63 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=13.4
Q ss_pred CCCCCCCHHHHHHHHHHCCEEEEEEC
Q ss_conf 48888511357888863270288504
Q gi|254780900|r 81 IGGEDYPAYDAVRIALMRGCHVVTAN 106 (438)
Q Consensus 81 iGg~~~pA~~~i~~AL~~GkhVVTAN 106 (438)
||+..+..++.++.-.++|.|||.+.
T Consensus 20 TGa~sGIG~~~a~~La~~Ga~Vil~~ 45 (314)
T PRK05854 20 TGASSGLGFGLARRLAAAGADVILPV 45 (314)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 06882999999999997849899997
No 474
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=49.70 E-value=16 Score=16.66 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=18.4
Q ss_pred EEEEEEC-CCHHHHHHHHHHHHH
Q ss_conf 6999982-566789999999998
Q gi|254780900|r 5 LKVGVAG-LGTVGSALIRSIQKR 26 (438)
Q Consensus 5 ikIgiiG-~G~VG~~~~~~l~~~ 26 (438)
|||-|.| +|.+|+.+++.|.++
T Consensus 1 MkILVTGg~GFIGs~l~~~Ll~~ 23 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINN 23 (352)
T ss_pred CEEEEECCHHHHHHHHHHHHHHC
T ss_conf 97999751008999999999977
No 475
>KOG3820 consensus
Probab=49.56 E-value=19 Score=16.17 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=10.6
Q ss_pred HHHHHHHCCCEEEEECCCCCHHH
Q ss_conf 99875313966996056453013
Q gi|254780900|r 117 LALLAQKNNAILNFEAAVAGGIP 139 (438)
Q Consensus 117 L~~lA~~~gv~l~~easV~ggiP 139 (438)
+.+|-+-++.-+.|++..-+--|
T Consensus 131 IsdLD~can~vl~Yg~eLDadHP 153 (461)
T KOG3820 131 ISDLDQCANRVLKYGPELDADHP 153 (461)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 66899987788613777789999
No 476
>PRK00072 hemC porphobilinogen deaminase; Reviewed
Probab=49.06 E-value=19 Score=16.12 Aligned_cols=75 Identities=17% Similarity=0.169 Sum_probs=43.4
Q ss_pred CCCCEEEEEECCCHHHHHHHHH-HHHHHHHHHHHC-CCCEEEEEEEECC-CCCCCCC-C-CCCCHHCCCHHHHHCCCCCC
Q ss_conf 9872699998256678999999-999899999973-9965999998268-5200278-8-77102207888984488998
Q gi|254780900|r 1 MAGVLKVGVAGLGTVGSALIRS-IQKREGRFKDLD-QHSFVVSAISARD-KNIDRGI-D-CLRYEWFDDPLIMAGEADID 75 (438)
Q Consensus 1 Msk~ikIgiiG~G~VG~~~~~~-l~~~~~~l~~~~-g~~i~i~~i~~r~-~~k~~~~-~-~~~~~~~~d~~~li~~~~ID 75 (438)
|.++|+||= =+|.++.. -..-.+.+.+.+ +.+++++.+...- ....+.+ . ...-.|+++.++.+-+.+||
T Consensus 1 M~~~irIgt-----R~S~LAl~Qa~~V~~~L~~~~p~~~~ei~~i~T~GD~~~~~pL~~iGgkG~Ftkele~aLl~g~iD 75 (300)
T PRK00072 1 MMRKLRIGT-----RGSKLALWQAEWVKDRLKAAHPGLEVELVPIKTKGDRILDVPLAKIGGKGLFVKELEEALLDGEID 75 (300)
T ss_pred CCCCEEEEE-----CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHCCCCEEEHHHHHHHHHHCCCC
T ss_conf 997669997-----898999999999999999758997189999964674456875788289503589999999828755
Q ss_pred EEEEC
Q ss_conf 99986
Q gi|254780900|r 76 VFVEL 80 (438)
Q Consensus 76 vVVEl 80 (438)
+.|--
T Consensus 76 iAVHS 80 (300)
T PRK00072 76 IAVHS 80 (300)
T ss_pred EEEEE
T ss_conf 25541
No 477
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=48.92 E-value=19 Score=16.10 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=13.9
Q ss_pred EEEEECCCHHHHH-HHHHHHHH
Q ss_conf 9999825667899-99999998
Q gi|254780900|r 6 KVGVAGLGTVGSA-LIRSIQKR 26 (438)
Q Consensus 6 kIgiiG~G~VG~~-~~~~l~~~ 26 (438)
||||+|.+.-|+. +++.|.-+
T Consensus 1 Niai~gH~gaGKTtL~EalL~~ 22 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYY 22 (270)
T ss_pred CEEEEECCCCCHHHHHHHHHHH
T ss_conf 9899968999988999999986
No 478
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=48.63 E-value=19 Score=16.07 Aligned_cols=109 Identities=21% Similarity=0.133 Sum_probs=60.3
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC-CCCCCCCCC----HHCCCHHHHHCCCCCCE
Q ss_conf 8726999982566789999999998999999739965999998268520-027887710----22078889844889989
Q gi|254780900|r 2 AGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNI-DRGIDCLRY----EWFDDPLIMAGEADIDV 76 (438)
Q Consensus 2 sk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k-~~~~~~~~~----~~~~d~~~li~~~~IDv 76 (438)
.+..||-|+|-|-.|+.++=-+ ++.| ++++++ ||=.+. .-.+.-..+ .-.+....+++...-|.
T Consensus 10 ~~a~kvmLLGSGELGKEvaIe~--------QRLG--~eVIAV-DrY~~APAmqVAhrs~Vi~MlD~~al~avv~re~Pd~ 78 (394)
T COG0027 10 PQATKVMLLGSGELGKEVAIEA--------QRLG--VEVIAV-DRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDY 78 (394)
T ss_pred CCCEEEEEECCCCCCHHHHHHH--------HHCC--CEEEEE-CCCCCCHHHHHHHHEEEEECCCHHHHHHHHHHHCCCE
T ss_conf 7774899963886446999988--------8638--779996-3768980664211113454569999999998658981
Q ss_pred EEECCCCCCCCHHHHHHHHHHCCEEEE-EECHHHHHHHHHHHHHHHHHC
Q ss_conf 998648888511357888863270288-504177887689999875313
Q gi|254780900|r 77 FVELIGGEDYPAYDAVRIALMRGCHVV-TANKALIASHGKDLALLAQKN 124 (438)
Q Consensus 77 VVEliGg~~~pA~~~i~~AL~~GkhVV-TANKallA~~g~eL~~lA~~~ 124 (438)
+|--| +-.+.+-..+.=+.|-+|| ||+-.-+..+.+.|.++|.+.
T Consensus 79 IVpEi---EAI~td~L~elE~~G~~VVP~ArAt~ltMnRegiRrlAAee 124 (394)
T COG0027 79 IVPEI---EAIATDALVELEEEGYTVVPNARATKLTMNREGIRRLAAEE 124 (394)
T ss_pred EEEHH---HHHHHHHHHHHHHCCCEECCCHHHHHHHHCHHHHHHHHHHH
T ss_conf 33135---66647889999867966755327777342689899988997
No 479
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B; InterPro: IPR013484 MoaB is thought to be involved in molybdopterin biosynthesis, though its exact role is not known. Structural studies of this polypeptide suggest that it may play a role in substrate-shuttling during biosynthesis . MoaB was capable of binding GTP, and it was suggested that the putative active site could also bind precursor Z and/or molybdenum. Potential protein interaction domains were also found, implying that MoaB may play a transport and/or storage role in molybdopterin biosynthesis. .
Probab=48.51 E-value=12 Score=17.46 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=24.9
Q ss_pred HHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 889844889989998648888511357888863
Q gi|254780900|r 65 PLIMAGEADIDVFVELIGGEDYPAYDAVRIALM 97 (438)
Q Consensus 65 ~~~li~~~~IDvVVEliGg~~~pA~~~i~~AL~ 97 (438)
..+.+.||+||+|+ .+||+.-.+++..=+||+
T Consensus 55 Vs~WIAd~~VqVil-~TGGTGfTgRD~TPEAl~ 86 (163)
T TIGR02667 55 VSEWIADPAVQVIL-ITGGTGFTGRDVTPEALE 86 (163)
T ss_pred HHHHCCCCCCCEEE-ECCCCCCCCCCCCHHHHH
T ss_conf 98734898655688-718823467788255310
No 480
>PRK07236 hypothetical protein; Provisional
Probab=48.24 E-value=18 Score=16.22 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=26.1
Q ss_pred CCCC--EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf 9872--69999825667899999999989999997399659999982685
Q gi|254780900|r 1 MAGV--LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDK 48 (438)
Q Consensus 1 Msk~--ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~ 48 (438)
|++| -||.|+|.|-.|-.++-.|.+ .|.++. |..|+.
T Consensus 1 ~~~~~~~kV~IVGaGiaGL~~A~~L~~--------~G~~v~---v~Er~~ 39 (386)
T PRK07236 1 MTHMSKPRAVVVGGSLGGLFAANLLRR--------AGWDVD---VFERSP 39 (386)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHH--------CCCCEE---EECCCC
T ss_conf 998999968999936899999999985--------899989---986899
No 481
>KOG1430 consensus
Probab=48.08 E-value=18 Score=16.35 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=23.9
Q ss_pred CCCCEEEEEEC-CCHHHHHHHHHHHHHHH
Q ss_conf 98726999982-56678999999999899
Q gi|254780900|r 1 MAGVLKVGVAG-LGTVGSALIRSIQKREG 28 (438)
Q Consensus 1 Msk~ikIgiiG-~G~VG~~~~~~l~~~~~ 28 (438)
|+++-.+-++| +|.+|+.++++|.++..
T Consensus 1 ~~~~~~vlVtGG~GflG~hlv~~L~~~~~ 29 (361)
T KOG1430 1 MEKKLSVLVTGGSGFLGQHLVQALLENEL 29 (361)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 99677799989833789999999984566
No 482
>TIGR02520 pilus_B_mal_scr type IVB pilus formation outer membrane protein, R64 PilN family; InterPro: IPR013359 Several related protein families encode outer membrane pore proteins for type II secretion, type III secretion, and type IV pilus formation. Proteins in this entry appear to be secretins for pilus formation, although they are quite different from PilQ. Members include the PilN lipoprotein of the plasmid R64 thin pilus, a type IV pilus. Some proteins may be examples of bundle-forming pilus B (bfpB)..
Probab=48.02 E-value=20 Score=16.04 Aligned_cols=223 Identities=18% Similarity=0.103 Sum_probs=104.0
Q ss_pred HCCEEEEEECHHHHHHHHHHHH-HHHHHCCCEEEEECCCCCHHHHHHHHHH-HH------HCCCCEEEEEEECCCHHHHE
Q ss_conf 3270288504177887689999-8753139669960564530131899987-64------12862034333142000000
Q gi|254780900|r 97 MRGCHVVTANKALIASHGKDLA-LLAQKNNAILNFEAAVAGGIPIIRILKN-YV------EYDEINRVYGIINGTCNYIL 168 (438)
Q Consensus 97 ~~GkhVVTANKallA~~g~eL~-~lA~~~gv~l~~easV~ggiPii~~l~~-~l------~~~~i~~i~GIlnGT~nyIL 168 (438)
..|..||-|--|..|...-.-- +-=.++++.-.-.+.=.++.|-+.+.-- ++ .|.-..+.+--..|-+.+.-
T Consensus 49 ~tG~PvvvaadA~~A~~~S~~~G~~GA~ra~~~~~~~~~~~~~p~l~~gl~G~~~~GGGktGGGa~s~~Se~~~~~~~l~ 128 (536)
T TIGR02520 49 LTGVPVVVAADALSALIRSSSSGESGAARAVPAVLSASDERAAPPLPSGLAGSLSAGGGKTGGGAASLESEGEGGTEGLI 128 (536)
T ss_pred EECCCEEECHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEE
T ss_conf 20797187643650343023677655300031000588777756677776776777877567440120334578884206
Q ss_pred EHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHCCHHHHHHHHHCCC
Q ss_conf 0010068778899887876176156532232117899999999999818855531--00012232047674034787198
Q gi|254780900|r 169 SHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHKIAILSAIAFGIDTSVE--GVYCEGISNITLEDIRGAADFGY 246 (438)
Q Consensus 169 ~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa~~~~g~~~~~~--~v~~~gI~~i~~~di~~a~~~g~ 246 (438)
++..-+|-+..-+|.+ |-+|+.+.|+++.. .|. |-|..-.-|
T Consensus 129 ~~v~~~G~~l~GlLd~-------------------------v~Sr~Gl~Wky~~~lq~v~-----------~~y~dTRtF 172 (536)
T TIGR02520 129 VDVKWEGEPLSGLLDQ-------------------------VTSRLGLSWKYENGLQAVR-----------IFYTDTRTF 172 (536)
T ss_pred EEEEEECCCHHHHHHH-------------------------HHHHCCCCEEECCCCCEEE-----------EEEEECCEE
T ss_conf 7888627807998888-------------------------8875586247807865799-----------998626289
Q ss_pred EEEEEEEEEECCCCCEEEEEEEEEECC-CCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCC-------C-------HHH
Q ss_conf 587410133136783569999864167-7300036654168983113100589726876661-------0-------206
Q gi|254780900|r 247 CIKFLAMARRKGKGIIRYVYPVLLKYD-SVMALVDGITNAVVIETNGLGKLTMTGPGAGGSA-------T-------ASA 311 (438)
Q Consensus 247 ~ikli~~~~~~~~~i~~~V~P~li~~~-~~la~v~g~~Nai~i~~~~~g~~~~~G~GAG~~~-------T-------Asa 311 (438)
.|+-+ ..+.-++..|.-...... .-=..+.|..|.= | -. -|||... | -..
T Consensus 173 ~v~al----~~~~~l~S~v~st~~s~~Gsgss~sgGs~~SG-------G--~~--~~~GsGttGltanstq~tav~~~~s 237 (536)
T TIGR02520 173 QVKAL----PGDSALNSSVTSTASSTAGSGSSESGGSGNSG-------G--AI--GDAGSGTTGLTANSTQSTAVKLKSS 237 (536)
T ss_pred EEEEE----CCCEEEEEEEEEEEEEECCCCCCCCCCCCCCC-------C--CC--CCCCCCCCCCCCCCCCEEEEEEEHH
T ss_conf 99984----79704654664411120236756666678866-------6--66--8877753452114664057875013
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 8899999974177776556666783100234438853446532799992488874899999988669957888822
Q gi|254780900|r 312 VLGDICSIAKTNTQKSVSWALGKESSSFSVIHCDGVYEEEKEYFIRLTIRNFEGILDKITSQMSDFNISLRLFSCP 387 (438)
Q Consensus 312 V~sDli~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yYLRl~v~DkpGVLa~It~ilak~~ISIesi~Q~ 387 (438)
|+.||=+-.+.+-... +.|+-.-+... =-|.|.|.|.||-.|...+...|.+|.+....
T Consensus 238 v~~di~~~v~aMlS~~---P~G~~~lS~sT--------------G~L~VtD~P~VL~Rv~~Y~~~~N~~l~rqV~L 296 (536)
T TIGR02520 238 VLNDIQKSVKAMLSSS---PEGSLVLSRST--------------GSLAVTDSPEVLDRVASYIDSQNRRLTRQVLL 296 (536)
T ss_pred HHHHHHHHHEEEECCC---CCCCEEEECCC--------------EEEEEEECCCHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 4543311020120469---98406876054--------------06899406646889999998505011304898
No 483
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=46.83 E-value=16 Score=16.63 Aligned_cols=194 Identities=16% Similarity=0.183 Sum_probs=84.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC----CCCCCC-------CCCCCHHCCCHHHHHCCCCC
Q ss_conf 9999825667899999999989999997399659999982685----200278-------87710220788898448899
Q gi|254780900|r 6 KVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDK----NIDRGI-------DCLRYEWFDDPLIMAGEADI 74 (438)
Q Consensus 6 kIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~----~k~~~~-------~~~~~~~~~d~~~li~~~~I 74 (438)
||.++|+|..|+.+++.|. ..|.. -..+.|.|. +..|.+ ..++...-.....-+ +|++
T Consensus 1 KVlvvGaGglGce~~k~La--------~~Gvg--~i~iiD~D~Ie~SNLnRQfLf~~~dvGk~Ka~vAa~~l~~~-Np~~ 69 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLA--------LMGFG--QIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDR-NPNC 69 (234)
T ss_pred CEEEECCCHHHHHHHHHHH--------HCCCC--EEEEECCCEECCCCCCHHHCCCCCCCCCCHHHHHHHHHHHH-CCCC
T ss_conf 9899948887999999999--------83998--69997599005677013024464426882299999999987-8997
Q ss_pred CEEEECCCCCCCCHHHHHHHHHHCCEEEEEE-CHHHHHHHHHHHHHHHHHCCCEEEEECCCCC----HHHHHHHHHHHHH
Q ss_conf 8999864888851135788886327028850-4177887689999875313966996056453----0131899987641
Q gi|254780900|r 75 DVFVELIGGEDYPAYDAVRIALMRGCHVVTA-NKALIASHGKDLALLAQKNNAILNFEAAVAG----GIPIIRILKNYVE 149 (438)
Q Consensus 75 DvVVEliGg~~~pA~~~i~~AL~~GkhVVTA-NKallA~~g~eL~~lA~~~gv~l~~easV~g----giPii~~l~~~l~ 149 (438)
++.--. +... +...+- ..+=.+.+||.. =--.-| ...+-+.+-..++.|- |+.+.| -.+|+.-..+++.
T Consensus 70 ~I~~~~-~~v~-~e~~~~-~~f~~~~DvVi~alDN~~a--R~~vN~~c~~~~~PLI-egGt~G~~Gqv~~IiP~~T~Cy~ 143 (234)
T cd01484 70 KVVPYQ-NKVG-PEQDFN-DTFFEQFHIIVNALDNIIA--RRYVNGMLIFLIVPLI-ESGTEGFKGNAQVILPGMTECIE 143 (234)
T ss_pred EEEEEE-CCCC-CCCCCC-HHHHHHCCEEEECCCCHHH--HHHHHHHHHHHCCCEE-EECCCCCEEEEEEEECCCCCCCC
T ss_conf 799980-5568-621057-9888529999988578889--9999999998099859-72024614799998389977868
Q ss_pred CCCCEEEEEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 28620343331420000000010068778899887876176156532232117899999999999818855531000122
Q gi|254780900|r 150 YDEINRVYGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHKIAILSAIAFGIDTSVEGVYCEG 229 (438)
Q Consensus 150 ~~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa~~~~g~~~~~~~v~~~g 229 (438)
. ... .-..+|=+.-....-...+.++.=|+.+=+ +|-+-+|--.+.+-+-...||.+. .+...++|
T Consensus 144 C-~~~------~~~~~~p~CTi~~~P~~~~Hci~wa~~~~~------d~~~h~~~i~~~an~ra~~f~I~~-~~~~~~~~ 209 (234)
T cd01484 144 C-TLY------PPQKNFPMCTIASMPRLPEHCIEWARMLQW------DDPEHIQFIFQASNERASQYNIRG-VTYFLTKG 209 (234)
T ss_pred C-CCC------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHH
T ss_conf 9-999------988877753057998971899999999837------878999999999999999769998-89999998
Q ss_pred H
Q ss_conf 3
Q gi|254780900|r 230 I 230 (438)
Q Consensus 230 I 230 (438)
|
T Consensus 210 i 210 (234)
T cd01484 210 V 210 (234)
T ss_pred H
T ss_conf 8
No 484
>COG2403 Predicted GTPase [General function prediction only]
Probab=46.03 E-value=11 Score=17.68 Aligned_cols=89 Identities=22% Similarity=0.301 Sum_probs=44.0
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE--------EECCCC--CC-----CCCCCCCCHHCCCH
Q ss_conf 9872699998256678999999999899999973996599999--------826852--00-----27887710220788
Q gi|254780900|r 1 MAGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAI--------SARDKN--ID-----RGIDCLRYEWFDDP 65 (438)
Q Consensus 1 Msk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i--------~~r~~~--k~-----~~~~~~~~~~~~d~ 65 (438)
|.++.||.++|.|.=- +...+..++. ....++.+. ..|... .. .++..-..+-+++.
T Consensus 3 m~a~kRviiLgaggrd------fhv~n~a~r~--~~~yevvaf~aaqiiG~~er~yppsleg~~~p~Gvpi~~~k~~~~l 74 (449)
T COG2403 3 MKARKRVIILGAGGRD------FHVFNVALRD--NPEYEVVAFTAAQIIGGTERIYPPSLEGVLYPLGVPILPEKDYDDL 74 (449)
T ss_pred CCCCEEEEEEECCCCC------CCHHHHHHCC--CCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 7775269999506756------6224678606--8752478889988327766538997011323378330466468999
Q ss_pred HHHHCCCCCC-EEEECCCCCCCCHH----HHHHHHHHCCEE
Q ss_conf 8984488998-99986488885113----578888632702
Q gi|254780900|r 66 LIMAGEADID-VFVELIGGEDYPAY----DAVRIALMRGCH 101 (438)
Q Consensus 66 ~~li~~~~ID-vVVEliGg~~~pA~----~~i~~AL~~Gkh 101 (438)
.+++...++| +|+.+ +|. .+ .++...|.+|..
T Consensus 75 ek~ire~~VD~~Vlay---SDv-s~e~v~~IaS~vLs~GA~ 111 (449)
T COG2403 75 EKIIREKDVDIVVLAY---SDV-SYEHVFRIASRVLSAGAD 111 (449)
T ss_pred HHHHHHHCCCEEEEEC---CCC-CHHHHHHHHHHHHHCCCE
T ss_conf 9999870766168770---128-989987899999747853
No 485
>PRK05875 short chain dehydrogenase; Provisional
Probab=45.80 E-value=21 Score=15.78 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=18.0
Q ss_pred EEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC
Q ss_conf 9982-56678999999999899999973996599999826852
Q gi|254780900|r 8 GVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKN 49 (438)
Q Consensus 8 giiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~ 49 (438)
-|.| -+.+|+++++.|.+ .|.++- +++|+.+
T Consensus 11 lVTGas~GIG~aiA~~la~--------~Ga~Vi---i~~r~~~ 42 (277)
T PRK05875 11 LVTGGGSGIGKGVAAALVA--------AGAAVM---IVGRNPD 42 (277)
T ss_pred EEECCCCHHHHHHHHHHHH--------CCCEEE---EEECCHH
T ss_conf 9948874999999999998--------799899---9979889
No 486
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=45.78 E-value=21 Score=15.78 Aligned_cols=123 Identities=15% Similarity=0.092 Sum_probs=72.8
Q ss_pred CCEEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC----CCCCCCHHC----CCHHHHHCCCC
Q ss_conf 726999982-566789999999998999999739965999998268520027----887710220----78889844889
Q gi|254780900|r 3 GVLKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRG----IDCLRYEWF----DDPLIMAGEAD 73 (438)
Q Consensus 3 k~ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~----~~~~~~~~~----~d~~~li~~~~ 73 (438)
-+..+-|-| .|-+|.=+++.+..+ |.+. +++.||..|-.. .......|- .-..+++ ..
T Consensus 5 ~e~d~iiYGAtGy~G~lvae~l~~~--------g~~~---aLAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~--~~ 71 (382)
T COG3268 5 REYDIIIYGATGYAGGLVAEYLARE--------GLTA---ALAGRSSAKLDALRASLGPEAAVFPLGVPAALEAMA--SR 71 (382)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHC--------CCCH---HHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH--HC
T ss_conf 6403899746552158999999974--------8864---321688899988998509664446778889999997--42
Q ss_pred CCEEEECCCCCCCCHHHHHHHHHHCCEEEE--EECHHHHHHHHHHH-HHHHHHCCCEEEEECCCCCHHHH
Q ss_conf 989998648888511357888863270288--50417788768999-98753139669960564530131
Q gi|254780900|r 74 IDVFVELIGGEDYPAYDAVRIALMRGCHVV--TANKALIASHGKDL-ALLAQKNNAILNFEAAVAGGIPI 140 (438)
Q Consensus 74 IDvVVEliGg~~~pA~~~i~~AL~~GkhVV--TANKallA~~g~eL-~~lA~~~gv~l~~easV~ggiPi 140 (438)
.+||+.+.|.....+..++.+|+.+|-|-. |-.-. ..+.-..+ -+.|++.|+.+. -+.=-.-||.
T Consensus 72 ~~VVlncvGPyt~~g~plv~aC~~~GTdY~DiTGEi~-~fe~~i~~yh~~A~~~Ga~Ii-~~cGFDsIPs 139 (382)
T COG3268 72 TQVVLNCVGPYTRYGEPLVAACAAAGTDYADITGEIM-FFENSIDLYHAQAADAGARII-PGCGFDSIPS 139 (382)
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHCCCEEECCCCHH-HHHHHHHHHHHHHHHCCCEEE-CCCCCCCCCC
T ss_conf 6689961466120264799999971987241356179-999998887778875597896-6677776764
No 487
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit; InterPro: IPR010205 This entry represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria.; GO: 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0051537 2 iron 2 sulfur cluster binding, 0006814 sodium ion transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=45.43 E-value=22 Score=15.74 Aligned_cols=81 Identities=16% Similarity=0.237 Sum_probs=44.2
Q ss_pred CCCCCCCCCCCCEEEEEE--------EEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 773000366541689831--------1310058972687666102068899999974177-7765566667831002344
Q gi|254780900|r 273 DSVMALVDGITNAVVIET--------NGLGKLTMTGPGAGGSATASAVLGDICSIAKTNT-QKSVSWALGKESSSFSVIH 343 (438)
Q Consensus 273 ~~~la~v~g~~Nai~i~~--------~~~g~~~~~G~GAG~~~TAsaV~sDli~i~~~~~-~~~~~~~~~~~~~~~~~~~ 343 (438)
++...+++..+. |.+.| |.--+++|.|-|||.-|-=|- |+|..|+.+ .+.++++.|-++.+ +...
T Consensus 256 SSYifsLKpGDK-v~~sGPfGefF~kDtdaemvFigGGAGmap~Rsh----Ild~L~~lks~Rk~sfWYGARS~~-E~fY 329 (425)
T TIGR01941 256 SSYIFSLKPGDK-VTVSGPFGEFFAKDTDAEMVFIGGGAGMAPMRSH----ILDLLKRLKSKRKISFWYGARSKR-EIFY 329 (425)
T ss_pred EEEEEECCCCCE-EEEECCCCCCEEEECCCCEEEEECCCCCCHHHHH----HHHHHHHCCCCCCEEEEECCCCCC-CCCC
T ss_conf 333774479877-7997788853024578643897337354036899----999986002365024553652124-4322
Q ss_pred CCCH-----HHCCCCEEEEEE
Q ss_conf 3885-----344653279999
Q gi|254780900|r 344 CDGV-----YEEEKEYFIRLT 359 (438)
Q Consensus 344 ~~~~-----~~~~~~yYLRl~ 359 (438)
..++ +.-.++|-|-|+
T Consensus 330 ~edf~~L~~e~pNF~~H~aLS 350 (425)
T TIGR01941 330 EEDFDQLEAENPNFKWHVALS 350 (425)
T ss_pred HHHHHHHHHHCCCCEEEEEEC
T ss_conf 444788986489937999854
No 488
>TIGR00963 secA preprotein translocase, SecA subunit; InterPro: IPR000185 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component. . From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) . The chaperone protein SecB is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion . SecA is a cytoplasmic protein of 800 to 960 amino acid residues. Homologs of secA are also encoded in the chloroplast genome of some algae as well as in the nuclear genome of plants . It could be involved in the intraorganellar protein transport into thylakoids.; GO: 0005524 ATP binding, 0006605 protein targeting, 0006886 intracellular protein transport.
Probab=44.86 E-value=12 Score=17.54 Aligned_cols=89 Identities=15% Similarity=0.037 Sum_probs=41.0
Q ss_pred HCCHHHHHHHHHCC--CEE---EEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEE-EEEEEEE-EECCCC
Q ss_conf 04767403478719--858---7410133136783569999864167730003665416898311-3100589-726876
Q gi|254780900|r 232 NITLEDIRGAADFG--YCI---KFLAMARRKGKGIIRYVYPVLLKYDSVMALVDGITNAVVIETN-GLGKLTM-TGPGAG 304 (438)
Q Consensus 232 ~i~~~di~~a~~~g--~~i---kli~~~~~~~~~i~~~V~P~li~~~~~la~v~g~~Nai~i~~~-~~g~~~~-~G~GAG 304 (438)
.....|-+...++| |+| || .+++.++++--|-.=.=-|..+-|+ ++=.+|-..++|. .+-.+|= -|.- =
T Consensus 614 ~~~~~e~~~V~~lGGLyVIGTERH--ESRRIDNQLRGRsGRQGDPG~SrFf-LSleD~LmR~Fg~drl~~~m~~lg~~-d 689 (904)
T TIGR00963 614 AECSAEKEEVKELGGLYVIGTERH--ESRRIDNQLRGRSGRQGDPGSSRFF-LSLEDNLMRIFGGDRLKGLMRRLGLE-D 689 (904)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCC--CCCCCCCCCCCCCCCCCCCCCCCEE-ECHHHHHHHHCCCHHHHHHHHHCCCC-C
T ss_conf 999988999997289657730346--4323111102324363849873112-00101477651877899999863888-8
Q ss_pred CCCCHHHHHHHHHHHHHCCC
Q ss_conf 66102068899999974177
Q gi|254780900|r 305 GSATASAVLGDICSIAKTNT 324 (438)
Q Consensus 305 ~~~TAsaV~sDli~i~~~~~ 324 (438)
..|=-|..|+=.++-|..+.
T Consensus 690 d~Pies~~v~r~le~AQKrV 709 (904)
T TIGR00963 690 DEPIESKMVTRALESAQKRV 709 (904)
T ss_pred CCCCCCHHHHHHHHHHHHHH
T ss_conf 89665267889999988898
No 489
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis. ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=44.69 E-value=22 Score=15.66 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=39.3
Q ss_pred HHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCH---HHHHHH
Q ss_conf 888632702885041778876899998753139669960564530---131899
Q gi|254780900|r 93 RIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGG---IPIIRI 143 (438)
Q Consensus 93 ~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~gg---iPii~~ 143 (438)
..|.++|..||=+.-+|+ +.-+|-.+.++++|-.+.+-||-||| .=|+|.
T Consensus 125 ~~A~~aGvPvvPgt~Gp~-~t~eev~~f~~~~GYPvi~KAs~GGGGRGMRvvR~ 177 (1169)
T TIGR01235 125 NLAIKAGVPVVPGTDGPV-ETLEEVLDFAKAIGYPVIIKASYGGGGRGMRVVRS 177 (1169)
T ss_pred HHHHHCCCCEECCCCCCH-HHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECC
T ss_conf 888877887636886875-25999999997569958987216889720168607
No 490
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=44.15 E-value=23 Score=15.61 Aligned_cols=106 Identities=17% Similarity=0.287 Sum_probs=64.3
Q ss_pred CCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 88511357888863270288504177887689999875313966996056453013189998764128620343331420
Q gi|254780900|r 84 EDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAGGIPIIRILKNYVEYDEINRVYGIINGT 163 (438)
Q Consensus 84 ~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~ggiPii~~l~~~l~~~~i~~i~GIlnGT 163 (438)
+|+-..+.+++||++|.++| |- .-...-+++.+++.++++.+-.-- .-|.| ++.++....
T Consensus 95 IDT~~~~Va~~ale~Ga~iI--ND-Isg~~d~~~~~~va~~~~~~vlmH--~~g~p--~~m~~~~~y------------- 154 (282)
T PRK11613 95 VDTSKPEVIRESAKAGAHII--ND-IRSLSEPGALEAAAETGLPVCLMH--MQGNP--KTMQEAPKY------------- 154 (282)
T ss_pred EECCCHHHHHHHHHCCCCEE--EC-CCCCCCHHHHHHHHHCCCCEEEEE--CCCCC--CCCCCCCCC-------------
T ss_conf 97998899999996397888--66-321248659999997299889980--68998--553326763-------------
Q ss_pred HHHHEEHHHCCCCCHHHHHHHHHHCCCCC----CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 00000001006877889988787617615----6532232117899999999999
Q gi|254780900|r 164 CNYILSHMNNLGLSFQDCLEEARRQGYAE----GDATFDINGVDSSHKIAILSAI 214 (438)
Q Consensus 164 ~nyIL~~m~~~g~~f~~al~~Aq~lGyaE----~DP~~Di~G~Daa~Kl~ILa~~ 214 (438)
.|. +.++ ..-|++-++.|.+.|+.+ -||-+.- |-+..+-+.+|.++
T Consensus 155 ~dv-i~~v---~~~f~~~i~~~~~~Gi~~~~IilDPGiGF-gK~~~~n~~ll~~l 204 (282)
T PRK11613 155 DDV-FAEV---NRYFIEQIARCEQAGIAKEKLLLDPGFGF-GKNLSHNYQLLARL 204 (282)
T ss_pred CCH-HHHH---HHHHHHHHHHHHHCCCCCCEEEECCCCCC-CCCHHHHHHHHHHH
T ss_conf 527-9999---99999999999987999474998068776-78878899999838
No 491
>PRK06753 hypothetical protein; Provisional
Probab=43.53 E-value=23 Score=15.54 Aligned_cols=34 Identities=18% Similarity=0.395 Sum_probs=24.2
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC
Q ss_conf 699998256678999999999899999973996599999826852
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKN 49 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~ 49 (438)
|||.|+|.|-+|-.++-.|.+ .|.++. |..|+..
T Consensus 1 mkV~IVGaGiaGL~~A~~L~~--------~G~~v~---V~Er~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQE--------QGHTVK---VFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHH--------CCCCEE---EECCCCC
T ss_conf 989999945899999999997--------799999---9888999
No 492
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=43.27 E-value=23 Score=15.52 Aligned_cols=97 Identities=16% Similarity=0.082 Sum_probs=50.0
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC-CCCCCCHHCCC---HHHHHCCCCCCE
Q ss_conf 98726999982566789999999998999999739965999998268520027-88771022078---889844889989
Q gi|254780900|r 1 MAGVLKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRG-IDCLRYEWFDD---PLIMAGEADIDV 76 (438)
Q Consensus 1 Msk~ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~-~~~~~~~~~~d---~~~li~~~~IDv 76 (438)
|...|||-++|=|.=-.+++.-|.+ ...+.-..++--+..-... .......-.+| ..++..+.+||.
T Consensus 1 m~~~MkVLviGsGGREHAia~kl~~---------S~~v~~v~~aPGN~G~~~~~~~~~~~i~~~d~~~i~~fa~~~~idL 71 (426)
T PRK13789 1 MQVKLKVLLIGSGGRESAIAFALRK---------SNLLSELKVFPGNGGFPDDELLPADSFSILDKSSVQSFLKSNPFDL 71 (426)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH---------CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 9679889998988899999999961---------9898879998897611234545444338669999999999849999
Q ss_pred EEECCCCCCCC-HHHHHHHHHHCCEEEEEECHHH
Q ss_conf 99864888851-1357888863270288504177
Q gi|254780900|r 77 FVELIGGEDYP-AYDAVRIALMRGCHVVTANKAL 109 (438)
Q Consensus 77 VVEliGg~~~p-A~~~i~~AL~~GkhVVTANKal 109 (438)
+| +|. +.| +.-++-..-++|..|.=++|+.
T Consensus 72 vv--vGP-E~PL~~Gi~D~l~~~gi~vfGP~k~a 102 (426)
T PRK13789 72 IV--VGP-EDPLVAGFADWAAELGIPCFGPDSYC 102 (426)
T ss_pred EE--ECC-CHHHHHHHHHHHHHCCCEEECCCHHH
T ss_conf 99--896-68886317999841699168959899
No 493
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=43.09 E-value=23 Score=15.50 Aligned_cols=33 Identities=18% Similarity=0.057 Sum_probs=23.3
Q ss_pred EEEEEEEECCHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 5999921048899999999862383000473576
Q gi|254780900|r 397 SVFMITHKVSGKLIRDAIECFNGKSDAIRYSCVI 430 (438)
Q Consensus 397 ~IViiTh~~~e~~i~~ai~~i~~l~~v~~~~~~I 430 (438)
+.+.++|..+-.++.+|.+.+++-... ++.+++
T Consensus 294 ~~i~~~~~f~l~~~~~A~~~le~~~~~-GKvVL~ 326 (327)
T PRK10754 294 VDVAENQKYPLKDAQRAHEILESRATQ-GSSLLI 326 (327)
T ss_pred CCCCCCCEEEHHHHHHHHHHHHCCCCC-EEEEEE
T ss_conf 214777188099999999999769995-138995
No 494
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ; InterPro: IPR012802 Members of this family represent the alpha subunit of the multifunctional enzyme complex of the fatty acid degradation cycle, which plays a minor role in aerobic beta-oxidation of fatty acids. The FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (4.2.1.17 from EC), 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC), and 3-hydroxybutyryl-CoA epimerase (5.1.2.3 from EC). A representative is the Escherichia coli FadJ protein (also named YfcX) (P77399 from SWISSPROT). This entry excludes FadB of IPR012799 from INTERPRO.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0008692 3-hydroxybutyryl-CoA epimerase activity, 0051287 NAD binding, 0006635 fatty acid beta-oxidation, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=43.00 E-value=15 Score=16.79 Aligned_cols=172 Identities=19% Similarity=0.188 Sum_probs=97.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCC-----------C---CCCC-------CCCCCHHCC
Q ss_conf 699998256678999999999899999973996599999826852-----------0---0278-------877102207
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKN-----------I---DRGI-------DCLRYEWFD 63 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~-----------k---~~~~-------~~~~~~~~~ 63 (438)
=||||+|=|-+|.|.+.+=. .+.|.+++|+-|...=.+ | .|-+ ..-...-++
T Consensus 308 ~~vgvLGGGLMGGGIa~VTa-------tkAg~PvRiKDIn~~Gi~~AL~Y~~~~L~k~vkrr~~~~~e~~~~m~li~g~T 380 (732)
T TIGR02440 308 KKVGVLGGGLMGGGIASVTA-------TKAGIPVRIKDINPQGINNALKYAWKLLDKKVKRRHMKPAERDNQMALITGTT 380 (732)
T ss_pred CEEEEECCCCCCCCCCCHHH-------CCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCEEEEECCC
T ss_conf 43367347645663011322-------02788448863496567689878598726840000156456324135433363
Q ss_pred CHHHHHCCCCCCEEEECCCCCCCCHH--HHHHHHH--HCCEEEEEECHH---HHHHHHHHHHHHHHHC----CCEEEEEC
Q ss_conf 88898448899899986488885113--5788886--327028850417---7887689999875313----96699605
Q gi|254780900|r 64 DPLIMAGEADIDVFVELIGGEDYPAY--DAVRIAL--MRGCHVVTANKA---LIASHGKDLALLAQKN----NAILNFEA 132 (438)
Q Consensus 64 d~~~li~~~~IDvVVEliGg~~~pA~--~~i~~AL--~~GkhVVTANKa---llA~~g~eL~~lA~~~----gv~l~~ea 132 (438)
||.-+ .+.|||||+. =|.... +.+.. + +.+-|-|-|.-. || .++.+.|+.- |.. +|+
T Consensus 381 ~y~Gf---~~~D~vvEAV--FEdl~LK~QMV~d-iE~~~~~hTIFASNTSSLPI----~qIAa~A~RPE~ViGLH-YFS- 448 (732)
T TIGR02440 381 DYRGF---KDVDIVVEAV--FEDLELKHQMVKD-IERECAAHTIFASNTSSLPI----GQIAAAAERPENVIGLH-YFS- 448 (732)
T ss_pred CCCCE---ECCCEEEEEE--ECCHHHHHHHHHH-HHHCCCCEEEEEECCCCCCH----HHHHHHCCCCCCEECCE-ECC-
T ss_conf 21220---0144699876--0350212337899-96156770355314446877----89998404975212030-007-
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 64530131899987641286203433314200000000100687788998878761761565322321178999999999
Q gi|254780900|r 133 AVAGGIPIIRILKNYVEYDEINRVYGIINGTCNYILSHMNNLGLSFQDCLEEARRQGYAEGDATFDINGVDSSHKIAILS 212 (438)
Q Consensus 133 sV~ggiPii~~l~~~l~~~~i~~i~GIlnGT~nyIL~~m~~~g~~f~~al~~Aq~lGyaE~DP~~Di~G~Daa~Kl~ILa 212 (438)
=|- =.|.+..+-+. ||-|---+ ...+.+..++-|++.|=| |===.|=-|+.+=|=|+---
T Consensus 449 PVe-KMPLVEvIpH~--------------~TenGsat----S~~TIATtValA~KQGKT-pIVV~D~AGFYVNRILApY~ 508 (732)
T TIGR02440 449 PVE-KMPLVEVIPHA--------------KTENGSAT----SEETIATTVALAKKQGKT-PIVVADKAGFYVNRILAPYI 508 (732)
T ss_pred CCC-CCCCEEEECCC--------------CCCCCCCC----CHHHHHHHHHHHHHCCCC-CEEEECCCCCEEHHHHHHHH
T ss_conf 767-58855760788--------------76766667----645799999998506995-27873699753065667659
Q ss_pred HHH
Q ss_conf 998
Q gi|254780900|r 213 AIA 215 (438)
Q Consensus 213 ~~~ 215 (438)
|.|
T Consensus 509 NEA 511 (732)
T TIGR02440 509 NEA 511 (732)
T ss_pred HHH
T ss_conf 999
No 495
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=42.96 E-value=23 Score=15.48 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=18.9
Q ss_pred EEEEEECCCHHHHHHHHHHHHH
Q ss_conf 6999982566789999999998
Q gi|254780900|r 5 LKVGVAGLGTVGSALIRSIQKR 26 (438)
Q Consensus 5 ikIgiiG~G~VG~~~~~~l~~~ 26 (438)
-++.++|+|.+|.+.+++|...
T Consensus 24 ~~v~v~G~G~vg~~ia~ll~~~ 45 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADE 45 (86)
T ss_pred CEEEEECCCCHHHHHHHHHHHH
T ss_conf 5899977860428999999981
No 496
>PHA00368 internal virion protein D
Probab=42.78 E-value=5.6 Score=19.87 Aligned_cols=11 Identities=36% Similarity=0.365 Sum_probs=4.3
Q ss_pred HHHHHHHHHHC
Q ss_conf 89999875313
Q gi|254780900|r 114 GKDLALLAQKN 124 (438)
Q Consensus 114 g~eL~~lA~~~ 124 (438)
.+||.++|++|
T Consensus 298 LdelIklA~eN 308 (1316)
T PHA00368 298 LDELIKLANEN 308 (1316)
T ss_pred HHHHHHHHHHH
T ss_conf 99999987541
No 497
>pfam05343 Peptidase_M42 M42 glutamyl aminopeptidase. These peptidases are found in Archaea and Bacteria. The example in Lactococcus lactis, PepA, aids growth on milk. Pyrococcus horikoshii contain a thermostable de-blocking aminopeptidase member of this family used commercially for N-terminal protein sequencing.
Probab=41.68 E-value=25 Score=15.35 Aligned_cols=68 Identities=26% Similarity=0.272 Sum_probs=0.0
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHH--HHHHHHHHHCCCEEEEECCCCCHH
Q ss_conf 88998999864888851135788886327028850417788768--999987531396699605645301
Q gi|254780900|r 71 EADIDVFVELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHG--KDLALLAQKNNAILNFEAAVAGGI 138 (438)
Q Consensus 71 ~~~IDvVVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g--~eL~~lA~~~gv~l~~easV~ggi 138 (438)
+||+=++++.+-..+.|...-....|-.|--+-...+.++.... +.|.++|+++|..+-++..-++|.
T Consensus 181 ~pd~~I~vDv~~~~d~p~~~~~~~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~~~gT 250 (292)
T pfam05343 181 KPDEAIAVDVTPAGDTPGSDEYKAPLGKGPVIRVKDASGIYHPKLRKFLLELAKKNNIPYQVEVYPGGGT 250 (292)
T ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 9988999952126789999855410278735998258866898999999999987699728985688776
No 498
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; InterPro: IPR013454 Rhamnose is a methyl-pentose sugar which is found as a constituent of pectin within the cell walls of dicotyledonous plants and has also been found in the mucilage of a number of legume plants . RhaD from Rhizobium leguminosarum bv. trifolii is encoded by a gene occurring in a rhamnose utilisation cluster, and is necessary for growth on this compound . This protein is predicted to be a bifunctional NAD-dependent aldolase/dehydrogenase..
Probab=41.53 E-value=25 Score=15.34 Aligned_cols=55 Identities=24% Similarity=0.259 Sum_probs=0.0
Q ss_pred EEECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 998648888511357888863270288504177887689999875313966996056453
Q gi|254780900|r 77 FVELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAAVAG 136 (438)
Q Consensus 77 VVEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~easV~g 136 (438)
|+=++||-.+..++..++--..|-|||.|.+ ....+.+.|++=+-+|+-...|+|
T Consensus 426 Va~VtGGasGIG~~~A~rL~~eGAhvV~aD~-----d~~~a~~va~~~~~~fG~d~a~AG 480 (709)
T TIGR02632 426 VAFVTGGASGIGRETARRLVDEGAHVVLADL-----DAEAAEAVAAEIVDKFGADKAVAG 480 (709)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCEEEEECC-----CHHHHHHHHHHHHHHCCCCCEECC
T ss_conf 6889738865268999999736977999623-----657899999998631388812114
No 499
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=41.38 E-value=25 Score=15.32 Aligned_cols=99 Identities=27% Similarity=0.271 Sum_probs=0.0
Q ss_pred EEEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHCCCHHHHHCCCCCCEEEECCCC
Q ss_conf 6999982-566789999999998999999739965999998268520027887710220788898448899899986488
Q gi|254780900|r 5 LKVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDCLRYEWFDDPLIMAGEADIDVFVELIGG 83 (438)
Q Consensus 5 ikIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~~~~~~~~d~~~li~~~~IDvVVEliGg 83 (438)
|||.|+| .|.+|+.+.+++ +...++.+...++ -...-.+...+++.....|+||.+
T Consensus 1 M~iLi~G~~GqLG~~L~~~l-----------~~~~~v~a~~~~~---------~Ditd~~~v~~~i~~~~PDvVIn~--- 57 (281)
T COG1091 1 MKILITGANGQLGTELRRAL-----------PGEFEVIATDRAE---------LDITDPDAVLEVIRETRPDVVINA--- 57 (281)
T ss_pred CCEEEECCCCHHHHHHHHHH-----------CCCCEEEECCCCC---------CCCCCHHHHHHHHHHHCCCEEEEC---
T ss_conf 95899769876799999971-----------7784399515765---------555685899999986199989987---
Q ss_pred CCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 88511357888863270288504177887689999875313966996056
Q gi|254780900|r 84 EDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNAILNFEAA 133 (438)
Q Consensus 84 ~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv~l~~eas 133 (438)
.||.-+-.|=..------.| |..-.-+.++|++.|..+-|=.|
T Consensus 58 ---AAyt~vD~aE~~~e~A~~vN----a~~~~~lA~aa~~~ga~lVhiST 100 (281)
T COG1091 58 ---AAYTAVDKAESEPELAFAVN----ATGAENLARAAAEVGARLVHIST 100 (281)
T ss_pred ---CCCCCCCCCCCCHHHHHHHH----HHHHHHHHHHHHHHCCEEEEEEC
T ss_conf ---32036541338989977767----79999999999971976999634
No 500
>PRK13949 shikimate kinase; Provisional
Probab=41.30 E-value=18 Score=16.30 Aligned_cols=23 Identities=48% Similarity=0.771 Sum_probs=0.0
Q ss_pred CCCCEEEEEECCC--HHHHHHHHHH
Q ss_conf 9872699998256--6789999999
Q gi|254780900|r 1 MAGVLKVGVAGLG--TVGSALIRSI 23 (438)
Q Consensus 1 Msk~ikIgiiG~G--~VG~~~~~~l 23 (438)
|.+.+=||+.|+| +||+.+++.|
T Consensus 1 Mk~I~LiG~mGsGKstiGk~La~~l 25 (169)
T PRK13949 1 MARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9838997999998899999999995
Done!