HHsearch alignment for GI: 254780900 and conserved domain: pfam01113
>pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH.
Probab=98.10 E-value=3.4e-05 Score=56.45 Aligned_cols=109 Identities=26% Similarity=0.319 Sum_probs=77.2
Q ss_pred EEEEEECC-CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC------CCCHHCCCHHHHHCCCCCCEE
Q ss_conf 69999825-66789999999998999999739965999998268520027887------710220788898448899899
Q gi|254780900|r 5 LKVGVAGL-GTVGSALIRSIQKREGRFKDLDQHSFVVSAISARDKNIDRGIDC------LRYEWFDDPLIMAGEADIDVF 77 (438)
Q Consensus 5 ikIgiiG~-G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~~~k~~~~~~------~~~~~~~d~~~li~~~~IDvV 77 (438)
T Consensus 1 ikV~i~Ga~GrMG~~i~~~i~~~---------~~~~lv~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~DVv 69 (122)
T pfam01113 1 IKVAVVGASGRMGRELIKAILEA---------PDFELVAAVDRPGSSLLGSDAGELAGPLGVPVTDDLEEVL--ADADVL 69 (122)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC---------CCCEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCHHHHC--CCCCEE
T ss_conf 98999889887899999999858---------9968999994389612254310014678711124477751--578889
Q ss_pred EECCCCCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9864888851135788886327028850417788768999987531396
Q gi|254780900|r 78 VELIGGEDYPAYDAVRIALMRGCHVVTANKALIASHGKDLALLAQKNNA 126 (438)
Q Consensus 78 VEliGg~~~pA~~~i~~AL~~GkhVVTANKallA~~g~eL~~lA~~~gv 126 (438)
T Consensus 70 IDFS--~p~~~~~~~~~~~~~~~~~ViGTTG~s~~~~~~i~~~a~~ipi 116 (122)
T pfam01113 70 IDFT--TPEATLENLELALKHGKPLVIGTTGFTEEQLAELKEAAKKIPI 116 (122)
T ss_pred EEEC--CHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCE
T ss_conf 9906--8789999999999679988998999999999999998445988