HHsearch alignment for GI: 254780900 and conserved domain: smart00859
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=94.03 E-value=0.13 Score=31.35 Aligned_cols=87 Identities=21% Similarity=0.216 Sum_probs=47.3
Q ss_pred EEEEEC-CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC--CCCCCCC---CCCCC--HHCCCHHHHHCCCCCCEE
Q ss_conf 999982-566789999999998999999739965999998268--5200278---87710--220788898448899899
Q gi|254780900|r 6 KVGVAG-LGTVGSALIRSIQKREGRFKDLDQHSFVVSAISARD--KNIDRGI---DCLRY--EWFDDPLIMAGEADIDVF 77 (438)
Q Consensus 6 kIgiiG-~G~VG~~~~~~l~~~~~~l~~~~g~~i~i~~i~~r~--~~k~~~~---~~~~~--~~~~d~~~li~~~~IDvV 77 (438)
T Consensus 1 kVaIvGatGyvG~eli~lL~~hp---------~~~~~~l~as~~~~G~~i~~~~~~l~~~~~~~~~-~~~-~~~~~~Dvv 69 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHP---------DFEVVALAASARSAGKRVSEAGPHLKGEVVLELE-PED-FEELAVDIV 69 (122)
T ss_pred CEEEECCCHHHHHHHHHHHHHCC---------CCCEEEEEEECCCCCCCHHHHCCCCCCCCCCEEC-CCC-CCCCCCCEE
T ss_conf 98998945199999999998589---------9745777740465897578859664577350565-331-100179999
Q ss_pred EECCCCCCCCHHHHH---HHHHHCCEEEEEE
Q ss_conf 986488885113578---8886327028850
Q gi|254780900|r 78 VELIGGEDYPAYDAV---RIALMRGCHVVTA 105 (438)
Q Consensus 78 VEliGg~~~pA~~~i---~~AL~~GkhVVTA 105 (438)
T Consensus 70 f~a~p--~~~s~~~~~~~~~~~~~g~~VIDl 98 (122)
T smart00859 70 FLALP--HGVSKEIAPLLPKAAEAGVKVIDL 98 (122)
T ss_pred EECCC--CHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 99388--278899999889887569879868