HHsearch alignment for GI: 254780901 and conserved domain: CHL00162
>CHL00162 thiG thiamin biosynthesis protein G; Validated.
Probab=94.72 E-value=0.45 Score=28.36 Aligned_cols=103 Identities=20% Similarity=0.288 Sum_probs=70.0
Q ss_pred CCCHHHCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC-CHH
Q ss_conf 9667771899556148799999999999779979999407886152899999999976994799807874336688-978
Q gi|254780901|r 62 NPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP-NPS 140 (600)
Q Consensus 62 ~p~l~~l~~dP~~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl-~~~ 140 (600)
T Consensus 113 i~D~~tLlPD~~et---l~Aae~L---v~eGF~VlpY~~dD-------~v~akrLe~~Gc~avMPlgsPIGSg~Gl~n~~ 179 (267)
T CHL00162 113 IPDPKYLLPDPIGT---LKAAEFL---VRKGFTVLPYINAD-------PVLAKQLEDIGCATVMPLGSPIGSGQGLQNLL 179 (267)
T ss_pred ECCCCCCCCCHHHH---HHHHHHH---HHCCCEEEEECCCC-------HHHHHHHHHCCCEEEEECCCCCCCCCCCCCHH
T ss_conf 27987779887899---9999999---97899998954899-------89999998659868863455123688758999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 98874202686899964887623455555417982799
Q gi|254780901|r 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIV 178 (600)
Q Consensus 141 ~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIV 178 (600)
T Consensus 180 ~l~~i~e~-~~vPvIVDAGiG~pSdAa~aMElG~DaVL 216 (267)
T CHL00162 180 NLQIIIEN-AKIPVIIDAGIGTPSEASQAMELGASGVL 216 (267)
T ss_pred HHHHHHHC-CCCCEEEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 99999964-89988996898967888999974677787