HHsearch alignment for GI: 254780901 and conserved domain: COG0608
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=776.75 Aligned_cols=466 Identities=39% Similarity=0.607 Sum_probs=434.7
Q ss_pred CHHHCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHH
Q ss_conf 67771899556148799999999999779979999407886152899999999976994799807874336688978988
Q gi|254780901|r 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143 (600)
Q Consensus 64 ~l~~l~~dP~~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~ 143 (600)
T Consensus 9 ~~~~~-~~~~~l~~~~~a~~~i~~ai~~~~~I~I~~d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~~~~g----~~~ 83 (491)
T COG0608 9 DLSLL-LDPFLLKDMEKAAARIAEAIEKGEKILIYGDYDADGITSAAILAKALRRLGADVDYYIPNRFEEGYG----AIR 83 (491)
T ss_pred HHHCC-CCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCH----HHH
T ss_conf 77446-8856687599999999999966986999787885177899999999997698268974774455530----676
Q ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 74202686899964887623455555417982799615447655567256523788886433443047889999999999
Q gi|254780901|r 144 KFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIY 223 (600)
Q Consensus 144 ~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~~~~~~p~a~aivNP~~~~~~~p~~~l~gaGvaf~l~~al~ 223 (600)
T Consensus 84 ~~~~~~~~liItvD~G~~~~~~i~~~~~~g~~vIVtDHH~~~~~~p~~~~ivNP~~~~~~~~~~~lag~gv~f~l~~al~ 163 (491)
T COG0608 84 KLKEEGADLIITVDNGSGSLEEIARAKELGIDVIVTDHHPPGEELPDAVAIVNPNLPGCDYPFKELAGVGVAFKLARALL 163 (491)
T ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCEEHHHHHHHHHHHHH
T ss_conf 55650898899977997379999998736997899789999776886526858887887876100105699999999998
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC-CCCHHHHHHHHH
Q ss_conf 9702148876407799999998775420111144411899998788775168874357898708886-424234566677
Q gi|254780901|r 224 RILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISS-PITAENLGYMIG 302 (600)
Q Consensus 224 ~~l~~~~~~~~~~~l~~~ldlvaiGTvaD~vpL~~eNR~lvk~GL~~l~~~~~~gl~~L~~~~~~~~-~i~~~di~f~ia 302 (600)
T Consensus 164 ~~~~-----------~~ll~l~alGtv~D~~~l~~~nr~~v~~gl~~~~~~~~~gi~~ll~~~~~~~~~~~~~~i~~~~~ 232 (491)
T COG0608 164 EELR-----------KDLLDLVALGTVADVQPLTGENRILVNQGLKRLRKSGRPGIKALLKLAGRDTRQPTASDIGFIIG 232 (491)
T ss_pred HHHH-----------HHHHHHHHHHHHHCCEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEEC
T ss_conf 6524-----------54688988852110101651269999999998764144559999988375557885001231112
Q ss_pred HHCCHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHH
Q ss_conf 43062333121222210020342589999999999899999999999999999998752112434750262057858122
Q gi|254780901|r 303 PSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGI 382 (600)
Q Consensus 303 PrINAaGRl~~a~~av~lL~~~d~~~a~~la~~L~~lN~~Rk~~e~~i~~~a~~~~~~~~~~~~~~~~ivv~~~~wh~GV 382 (600)
T Consensus 233 P~ina~gr~~d~~~~~~L~~~~~~~~~~~~~~~~~~~n~erk~i~~~~~~~a~~~~~~~~~~--~~~~i~~~~~~~~~gv 310 (491)
T COG0608 233 PRINAAGRLGDAKAGVELLLTEDDEKAESLAEELELLNEERKKIENELLKEAIKIVEALEES--GEYVIVVSEEEWHPGV 310 (491)
T ss_pred CCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEECCCCCCHH
T ss_conf 54265565584668888622898055667999999858999999999999999875421245--8628998337867316
Q ss_pred HHHHHHHHHHHHHCEEEEEEECCCCEEEEEEECCC-CCCHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHH
Q ss_conf 22227899884201079988637983799986489-86188888853033530115653222314642221588999999
Q gi|254780901|r 383 VGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIE-GFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQ 461 (600)
Q Consensus 383 iGIVAsrL~e~y~kP~iv~s~~~dg~~kGS~RSi~-g~~l~~~l~~~~~~~ll~~~GGH~~AaG~ti~~~~l~~f~~~l~ 461 (600)
T Consensus 311 ~givas~l~~~~~rp~~~~~~~~~~~~kgs~rsi~~~~~~~~~l~~~~~~~~~~~~gGh~~aagl~~~~~~~~~~~~~~~ 390 (491)
T COG0608 311 LGIVASRLLNAFGRPVIVLAGDAEGGAKGSARSIAKGIDLRKLLRKGRSKLLLEKFGGHAMAAGLSLKEENLEEFRGILG 390 (491)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCEEEECCCHHHHHHHHH
T ss_conf 99999999998589648860355445654200225566599999863306666505884322855897243488999999
Q ss_pred HHHHHHCCHHHCCCCEEEEEEECHHHCCHHHHHHHHHCCCCCCCCCCCEEEECCEEEEEEEEECCCEEEEEEECCCCCEE
Q ss_conf 99986226443377147604434689799999999851846789998468427809988888479649999984998779
Q gi|254780901|r 462 KFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSETL 541 (600)
Q Consensus 462 ~~~~~~~~~~~~~~~l~iD~el~~~~i~~~l~~~L~~lePFG~gNpeP~F~~~~~~i~~~r~vGk~Hlkl~l~~~~g~~i 541 (600)
T Consensus 391 ~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~p~g~g~~~p~~~~~~~~~~~~~~~g--H~~~~~~~~~~--~ 466 (491)
T COG0608 391 EIASMILDKEELREKLEIDFALKDEDITLELVSALETLEPFGQGNPLPLFLRKAAEVVGGRGGG--HLKAAGANIPK--L 466 (491)
T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCC--EEEEEECCCCC--C
T ss_conf 9999875520467663365433633004999998754487447995567767766662365546--37898546687--3
Q ss_pred EEEEECCCCC
Q ss_conf 9999778787
Q gi|254780901|r 542 QAIAFRVYGT 551 (600)
Q Consensus 542 ~aI~Fn~~~~ 551 (600)
T Consensus 467 ~~~~F~~~~~ 476 (491)
T COG0608 467 DAIEFLKDLD 476 (491)
T ss_pred CHHHHHHHHH
T ss_conf 0888764435