HHsearch alignment for GI: 254780901 and conserved domain: PRK11070
>PRK11070 ssDNA exonuclease RecJ; Provisional.
Probab=100.00 E-value=0 Score=1262.37 Aligned_cols=547 Identities=33% Similarity=0.496 Sum_probs=505.1
Q ss_pred HHCCCHHHHHHHHHCCCC-HHHHHHHCCCCHHHCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 819999999999967889-7898866196677718995561487999999999997799799994078861528999999
Q gi|254780901|r 36 KHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMR 114 (600)
Q Consensus 36 ~~~~~~~~a~iL~~Rgi~-~~~~~~fL~p~l~~l~~dP~~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~ 114 (600)
T Consensus 16 ~~~i~p~~a~lL~~RGi~~~~~----~~~~l~~l~-~p~~l~dm~~Av~ri~~Ai~~~ekI~I~GDYDvDGiTstaiL~~ 90 (574)
T PRK11070 16 PAELPPLLRRLYASRGVRSAQE----LERSVKGLL-PWQQLSGIEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVL 90 (574)
T ss_pred CCCCCHHHHHHHHHCCCCCHHH----HHHHHHHCC-CHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 6667999999999779999999----847777479-92351399999999999998799499993478606799999999
Q ss_pred HHHHCCCC-EEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCEE
Q ss_conf 99976994-79980787433668897898874202686899964887623455555417982799615447655567256
Q gi|254780901|r 115 FLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYA 193 (600)
Q Consensus 115 ~L~~~g~~-v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~~~~~~p~a~a 193 (600)
T Consensus 91 ~l~~~g~~~v~y~IP~R~~eGYGl~~~~i~~~~~~g~~LiITvDcGi~a~e~i~~a~~~GidvIVtDHH~~~~~lP~a~a 170 (574)
T PRK11070 91 ALRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVAHAKSLGIPVIVTDHHLPGDTLPAADA 170 (574)
T ss_pred HHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCE
T ss_conf 99986997169979898767879799999999965999999957853029999999977999999789999765887516
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC----CHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 5237888864334430478899999999999702148876----407799999998775420111144411899998788
Q gi|254780901|r 194 LVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVP----LNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM 269 (600)
Q Consensus 194 ivNP~~~~~~~p~~~l~gaGvaf~l~~al~~~l~~~~~~~----~~~~l~~~ldlvaiGTvaD~vpL~~eNR~lvk~GL~ 269 (600)
T Consensus 171 ivNP~~~~~~yp~k~L~G~GVafkl~~al~~~l~~~~~~~~~~~~~~~l~~~ldlvalgTvaD~vpL~~eNR~lV~~GL~ 250 (574)
T PRK11070 171 IINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERGIAIPNLAELLDLVALGTVADVVPLDANNRILVWQGLS 250 (574)
T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 65789789899986655024999999999999876342444178807799999898676654012342058999999999
Q ss_pred HHHHCC-CCCHHHHHHHHCCC-CCCCHHHHHHHHHHHCCHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 775168-87435789870888-6424234566677430623331212222100203425899999999998999999999
Q gi|254780901|r 270 VARRQG-NPGLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLME 347 (600)
Q Consensus 270 ~l~~~~-~~gl~~L~~~~~~~-~~i~~~di~f~iaPrINAaGRl~~a~~av~lL~~~d~~~a~~la~~L~~lN~~Rk~~e 347 (600)
T Consensus 251 ~l~~~~~r~Gl~aL~~~~~~~~~~i~~~dIgF~iaPriNAaGRl~~a~~av~LL~~~d~~~A~~la~~L~~~N~~Rk~ie 330 (574)
T PRK11070 251 RIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIE 330 (574)
T ss_pred HHHHCCCCHHHHHHHHHHCCCCCCCCHHHEEEEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99757998579999997177878787534114656122156776533899998808999999999999999899999999
Q ss_pred HHHHHHHHHHHHHHHCC-CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEEEEECCCCCCHHHHHH
Q ss_conf 99999999998752112-43475026205785812222227899884201079988637983799986489861888888
Q gi|254780901|r 348 SAMLEQAEAKVLTQCDD-IQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVS 426 (600)
Q Consensus 348 ~~i~~~a~~~~~~~~~~-~~~~~~ivv~~~~wh~GViGIVAsrL~e~y~kP~iv~s~~~dg~~kGS~RSi~g~~l~~~l~ 426 (600)
T Consensus 331 ~~i~~eA~~~~e~~~~~~~~~~~~ivl~~~~WH~GViGIVAsRL~e~y~rP~ivl~~~~dG~~kGS~RSi~g~~l~~aL~ 410 (574)
T PRK11070 331 QGMQVEALTLCEKLERSSDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALE 410 (574)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCHHHHHH
T ss_conf 99999999999987634676771699964886750699999999999799889999878972786421789976899999
Q ss_pred HHCC--CCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCHHHCCCCEEEEEEECHHHCCHHHHHHHHHCCCCCC
Q ss_conf 5303--35301156532223146422215889999999998622644337714760443468979999999985184678
Q gi|254780901|r 427 FAVE--EGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGA 504 (600)
Q Consensus 427 ~~~~--~~ll~~~GGH~~AaG~ti~~~~l~~f~~~l~~~~~~~~~~~~~~~~l~iD~el~~~~i~~~l~~~L~~lePFG~ 504 (600)
T Consensus 411 ~~~~~~~~lL~~fGGH~~AAG~tl~~~~l~~f~~~l~~~~~~~~~~~~~~~~l~~D~~l~~~~i~~~l~~~L~~lePFG~ 490 (574)
T PRK11070 411 RLDTLYPGLILKFGGHAMAAGLSLEEDKFELFQQRFGELVTEWLDPSLLQGEVVSDGELSPAEMSMEVAELLRDAGPWGQ 490 (574)
T ss_pred HHHHHCHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCHHHCCCEEEEEEEECHHHCCHHHHHHHHHCCCCCC
T ss_conf 99864744564266755223015769999999999999999745876558727896572758689999999996497899
Q ss_pred CCCCCEEEECCEEEEEEEEECCCEEEEEEEC-CCCCEEEEEEECCCCCCHHHHHHCCCCCEEEEEEEEEEEEECCCCEEE
Q ss_conf 9998468427809988888479649999984-998779999977878701235530699879999997665457811058
Q gi|254780901|r 505 GNPNPVFAFPNHKLQSIRVVNLAHLQMTFES-QDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQ 583 (600)
Q Consensus 505 gNpeP~F~~~~~~i~~~r~vGk~Hlkl~l~~-~~g~~i~aI~Fn~~~~~~~~~~~~~~g~~idii~~l~~N~~~G~~s~Q 583 (600)
T Consensus 491 gNp~P~F~~~-~~v~~~r~vG~~Hlkl~l~~~~~~~~i~aI~F~~~~~~~----~~~~~~~vdi~~~l~iN~w~G~~s~Q 565 (574)
T PRK11070 491 MFPEPLFDGR-FRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTTLW----PDNSVREVELAYKLDINEFRGNRSLQ 565 (574)
T ss_pred CCCCCEEEEE-EEEEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCCC----CCCCCCEEEEEEEEEEEEECCCCEEE
T ss_conf 9998677201-489986770688479999967998589999968953225----43679889999998788789927289
Q ss_pred EEEEEEEEC
Q ss_conf 999980111
Q gi|254780901|r 584 LRVLDASPV 592 (600)
Q Consensus 584 L~I~Di~p~ 592 (600)
T Consensus 566 L~I~Di~P~ 574 (574)
T PRK11070 566 LIIDHIWPI 574 (574)
T ss_pred EEEEEEECC
T ss_conf 999987787