HHsearch alignment for GI: 254780901 and conserved domain: TIGR00486

>TIGR00486 TIGR00486 conserved hypothetical protein TIGR00486; InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown ..
Probab=93.88  E-value=0.1  Score=33.41  Aligned_cols=31  Identities=26%  Similarity=0.504  Sum_probs=24.3

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             86899964887623455555417982799615447
Q gi|254780901|r  150 AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV  184 (600)
Q Consensus       150 ~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~~  184 (600)
T Consensus        48 ~kv~~~vD~---s~~~~~~A~~~~~d~i~~-HHp~   78 (325)
T TIGR00486        48 KKVLVAVDA---SESVAKEAKEKNADLIIT-HHPL   78 (325)
T ss_pred             HHHHHHHHH---HHHHHHHHHHCCCCEEEE-ECCC
T ss_conf             455667778---999999998537979998-0786