HHsearch alignment for GI: 254780901 and conserved domain: TIGR00486
>TIGR00486 TIGR00486 conserved hypothetical protein TIGR00486; InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown ..
Probab=93.88 E-value=0.1 Score=33.41 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=24.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 86899964887623455555417982799615447
Q gi|254780901|r 150 AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 (600)
Q Consensus 150 ~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~~ 184 (600)
T Consensus 48 ~kv~~~vD~---s~~~~~~A~~~~~d~i~~-HHp~ 78 (325)
T TIGR00486 48 KKVLVAVDA---SESVAKEAKEKNADLIIT-HHPL 78 (325)
T ss_pred HHHHHHHHH---HHHHHHHHHHCCCCEEEE-ECCC
T ss_conf 455667778---999999998537979998-0786