>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ; InterPro: IPR004610 All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. RecJ is a single-stranded DNA-specific endonuclease which is required for many types of recombination events, although the stringency of the requirement for RecJ appears to vary with the type of recombinational event monitored, and the other recombination gene products which are available.; GO: 0008409 5'-3' exonuclease activity, 0006281 DNA repair, 0006310 DNA recombination.

Probab=100.00 E-value=0 Score=1274.67 Aligned_cols=551 Identities=38% Similarity=0.669 Sum_probs=523.8 Q ss_pred CCHHHHHHHHHCCCC-HHHHHHHCCCCHHHCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH Q ss_conf 999999999967889-7898866196677718995561487999999999997799799994078861528999999999 Q gi|254780901|r 39 IPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLS 117 (600) Q Consensus 39 ~~~~~a~iL~~Rgi~-~~~~~~fL~p~l~~l~~dP~~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~ 117 (600) T Consensus 1 ~~~~~a~~L~~Rg~~~~~~~~~fl~~~~~~l~~~p~~l~dm~kAv~ri~~A~~~~eki~i~GDyDvDGiTSt~~l~~~L~ 80 (705) T TIGR00644 1 LSPILAQILVSRGIKDAEELENFLEPDLSHLHDPPFLLKDMEKAVERIIEAIENNEKILIFGDYDVDGITSTAILVEFLR 80 (705) T ss_pred CCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH T ss_conf 94689999985587798999842145456887870211436899999999997289389996175226899999999999 Q ss_pred HCC--CCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCC-CCCCCCCCCEEE Q ss_conf 769--94799807874336688978988742026868999648876234555554179827996154-476555672565 Q gi|254780901|r 118 HCS--VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH-QVKSEEIPAYAL 194 (600) Q Consensus 118 ~~g--~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH-~~~~~~p~a~ai 194 (600) T Consensus 81 ~lGp~~~~~~~IPnR~~egYG~~~~~~~~~~~~G~~LiiTVD~Gi~a~~e~~~a~~~G~dVIVtDHHC~~~~~lP~a~Ai 160 (705) T TIGR00644 81 ELGPYVQVDYYIPNRFTEGYGLSPEALRELKENGVSLIITVDNGISAHEEIEYAKELGIDVIVTDHHCLPPETLPEAAAI 160 (705) T ss_pred HCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEE T ss_conf 50997324666266357777889899999986698399982687426999999986698199972567984899865057 Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC----------------------------------------------- Q ss_conf 237888864334430478899999999999702----------------------------------------------- Q gi|254780901|r 195 VNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILR----------------------------------------------- 227 (600) Q Consensus 195 vNP~~~~~~~p~~~l~gaGvaf~l~~al~~~l~----------------------------------------------- 227 (600) T Consensus 161 vNP~~~~~~yP~k~LaGvGVaFkl~~AL~~~~~~~Y~~~~VlL~~~~~~~~~~~~A~~~~N~~~~~~L~~~~~~~L~~S~ 240 (705) T TIGR00644 161 VNPKRPDCNYPFKELAGVGVAFKLVTALLEELRDLYSKNLVLLFLRKVKNEIILEAVKINNYILKDRLLTVKNDMLLNSN 240 (705) T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCHH T ss_conf 71675889988314678899999999999733311135768998740377113014567338988877624777666603 Q ss_pred --------------------------------------------------------------------------CCCCCC Q ss_conf --------------------------------------------------------------------------148876 Q gi|254780901|r 228 --------------------------------------------------------------------------QDNKVP 233 (600) Q Consensus 228 --------------------------------------------------------------------------~~~~~~ 233 (600) T Consensus 241 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~T~~~~~~~~~~~~~~R~~L~~~~~~~~~~~~~~~~~~~y~~l~~~~f~ 320 (705) T TIGR00644 241 KLLAVLEVIVIDEKVVRTELLKKFFAKFINIFTIVISRNAIKKYQNERKLLRDKIFARKYFKRKVEIKIKYIILKRGWFE 320 (705) T ss_pred HHHHHHEEEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCC T ss_conf 46432101156441578999987503354000002113443068325678878887654101351000025775247341 Q ss_pred ---CHHHHHHHHHHHHHHHHHCCCCCC--CCCHHHHHHHHHHHHHC-----CCCCHHHHHHHHCCCC-C-CCHHHHHHHH Q ss_conf ---407799999998775420111144--41189999878877516-----8874357898708886-4-2423456667 Q gi|254780901|r 234 ---LNFDLLSLLDLVALATVCDVVPLI--GLNRAYVVKGLMVARRQ-----GNPGLKALIERVNISS-P-ITAENLGYMI 301 (600) Q Consensus 234 ---~~~~l~~~ldlvaiGTvaD~vpL~--~eNR~lvk~GL~~l~~~-----~~~gl~~L~~~~~~~~-~-i~~~di~f~i 301 (600) T Consensus 321 ~~~~~~~~~~~LdLVAiGtiAD~~~L~~Y~eNR~lv~~Gl~~~~~~~~~~~~r~Glk~L~~~~~~~~~~~~~~~~igF~I 400 (705) T TIGR00644 321 KDKLKPDLLKLLDLVAIGTIADVMPLTEYGENRALVKKGLKALNKGADGKRKRPGLKALLKVAGFDKKKDLSSTDIGFSI 400 (705) T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEHHHHH T ss_conf 46663005767878776466302110233431899999999986288885320789999998146666674013113124 Q ss_pred HHHCCHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCEEEEECCCCC Q ss_conf 743062333121222210020342589999999999899999999999999999998752112--434750262057858 Q gi|254780901|r 302 GPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDD--IQQASVIVVEGDRWH 379 (600) Q Consensus 302 aPrINAaGRl~~a~~av~lL~~~d~~~a~~la~~L~~lN~~Rk~~e~~i~~~a~~~~~~~~~~--~~~~~~ivv~~~~wh 379 (600) T Consensus 401 gPriNA~GRl~~a~~a~~LL~~~d~~~a~~la~~l~~~N~~Rk~i~~~~~~ea~~~~~~~~~~~~l~~~~~~V~~~~~WH 480 (705) T TIGR00644 401 GPRINAAGRLGDASLAVELLLTDDPKQARELAEELDELNEERKKIEQEVLKEAEKIAEAELEKSDLTNDSVIVVAKENWH 480 (705) T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC T ss_conf 43664343027746789864130389999999999998899999999999999999984144234457812899617868 Q ss_pred HHHHHHHHHHHHHHHHCEEEEEEECCC-C-EEEEEEECCCCCCHHHHHHHHCC--CCCCCCCCCCCCCCCEEECCCCHHH Q ss_conf 122222278998842010799886379-8-37999864898618888885303--3530115653222314642221588 Q gi|254780901|r 380 PGIVGLLAARLKEKFGRPSFAISFEED-G-KGIGSGRSIEGFDIGKMVSFAVE--EGILVKGGGHAMAAGLTVERVNFGR 455 (600) Q Consensus 380 ~GViGIVAsrL~e~y~kP~iv~s~~~d-g-~~kGS~RSi~g~~l~~~l~~~~~--~~ll~~~GGH~~AaG~ti~~~~l~~ 455 (600) T Consensus 481 ~GV~GIvAsrL~~~~~KP~~v~~~~~~~g~~~KGS~RSi~~~~l~~~l~~~~~~~a~l~~~~GGH~~AAGl~~~~~~l~~ 560 (705) T TIGR00644 481 PGVLGIVASRLAETFNKPVIVLAIDEEKGVIAKGSARSISGIDLLDLLSELREKGAGLLLKFGGHAMAAGLTLKRENLEE 560 (705) T ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCHHHHCCCCCHHHCCCCCCHHHHHH T ss_conf 63187788889886389789998389985799877202133106989976520130133127880465055566621189 Q ss_pred HHHHHHHHHHHHC-CHHHCCCCEEEEEEECHHHCCHHHHHHHHHCC-CCCCCCCCCEEEECCEEEEE---EEEEC--CCE Q ss_conf 9999999998622-64433771476044346897999999998518-46789998468427809988---88847--964 Q gi|254780901|r 456 LCDFFQKFAHNIV-PALITTPVFKIDGVLNASAVNIALIDMLESAG-PYGAGNPNPVFAFPNHKLQS---IRVVN--LAH 528 (600) Q Consensus 456 f~~~l~~~~~~~~-~~~~~~~~l~iD~el~~~~i~~~l~~~L~~le-PFG~gNpeP~F~~~~~~i~~---~r~vG--k~H 528 (600) T Consensus 561 f~~~l~~~~~~~~~~~~~~~~~~~~D~~l~~~~~~~~l~~~~~~l~~PfG~gNp~P~f~~~~~~~~~~~~~~~~g~~~~H 640 (705) T TIGR00644 561 FREKLEEKFKKSLEADESFEEILEVDAELKAEEITRELIEQLEKLEDPFGQGNPEPLFLLKNLRVEEEQIIKLIGKDENH 640 (705) T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEECCEECHHHCCHHHHHHHHHHCCCCCCCCCCCEEEECCEEECCCHHHHHHCCCCCC T ss_conf 99999999987520122202320102243378538789999998505457889664276222021364277661546561 Q ss_pred EEEEEECCC----CCEEEEEEECCCCCCHHHHHHCCCCCEEEEEEEEEEEEECCCCEEEEEEEEE Q ss_conf 999998499----8779999977878701235530699879999997665457811058999980 Q gi|254780901|r 529 LQMTFESQD----SETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 (600) Q Consensus 529 lkl~l~~~~----g~~i~aI~Fn~~~~~~~~~~~~~~g~~idii~~l~~N~~~G~~s~QL~I~Di 589 (600) T Consensus 641 ~k~~l~~~~~~p~g~~~~ai~f~~~~~~~~~~~~~~~~~~~~~~g~l~~n~~~g~~~~ql~i~d~ 705 (705) T TIGR00644 641 LKLSLKSGEQGPDGKNIEAIAFNAGEKPLIQLLELNLGRPLDVAGKLSINEWRGREKPQLIIQDL 705 (705) T ss_pred EEEEEECCCCCCCCCEEEEEEEECCCCCCCCHHHCCCCCEEEEEEEEEEEEECCCCEEEEEEECC T ss_conf 78998507768987367789871577221121213688578999998765006863045677229

HHsearch alignment for GI: 254780901 and conserved domain: TIGR00644