HHsearch alignment for GI: 254780901 and conserved domain: cd04492
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=95.87 E-value=0.084 Score=34.05 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=54.9
Q ss_pred EEEECCEEEEEEEEECCCEEEEEEECCCCCEEEEEEECCCCCCHHHHHHCCCCCEEEEEEEEEEEEECCCCEEEEEEEEE
Q ss_conf 68427809988888479649999984998779999977878701235530699879999997665457811058999980
Q gi|254780901|r 510 VFAFPNHKLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDA 589 (600)
Q Consensus 510 ~F~~~~~~i~~~r~vGk~Hlkl~l~~~~g~~i~aI~Fn~~~~~~~~~~~~~~g~~idii~~l~~N~~~G~~s~QL~I~Di 589 (600)
T Consensus 3 ~fli~~~~~~-~tk~G~~Yl~l~L~D~tG-~I~ak~W~~~~~~~---~~~~~g~~V~v~G~v~--~y~g--~~Ql~I~~i 73 (83)
T cd04492 3 FFLIKSKELR-TAKNGKPYLALTLQDKTG-EIEAKLWDASEEDE---EKFKPGDIVHVKGRVE--EYRG--RLQLKIQRI 73 (83)
T ss_pred EEEEEEHHHH-CCCCCCCEEEEEEECCCC-EEEEEECCCCHHHH---HCCCCCCEEEEEEEEE--EECC--CEEEEEEEE
T ss_conf 9999980100-057999178999987887-68888857886788---3078999999999998--8899--510899896
Q ss_pred EECCCCCC
Q ss_conf 11131126
Q gi|254780901|r 590 SPVEGHHF 597 (600)
Q Consensus 590 ~p~e~~~~ 597 (600)
T Consensus 74 ~~~~~~d~ 81 (83)
T cd04492 74 RLVTEEDG 81 (83)
T ss_pred EECCCCCC
T ss_conf 89983447