HHsearch alignment for GI: 254780901 and conserved domain: pfam02272

>pfam02272 DHHA1 DHHA1 domain. This domain is often found adjacent to the DHH domain pfam01368 and is called DHHA1 for DHH associated domain. This domain is diagnostic of DHH subfamily 1 members. This domains is also found in alanyl tRNA synthetase, suggesting that this domain may have an RNA binding function. The domain is about 60 residues long and contains a conserved GG motif.

Probab=98.12  E-value=2.6e-06  Score=69.30  Aligned_cols=65  Identities=28%  Similarity=0.378  Sum_probs=54.8

Q ss_pred             HCEEEEEEECCCCEEEEEEECCCCCCHH--HHHHHHCCCCCCCCCCCCCCCCCEEECCCC-HHHHHHHHH
Q ss_conf             0107998863798379998648986188--888853033530115653222314642221-588999999
Q gi|254780901|r  395 GRPSFAISFEEDGKGIGSGRSIEGFDIG--KMVSFAVEEGILVKGGGHAMAAGLTVERVN-FGRLCDFFQ  461 (600)
Q Consensus       395 ~kP~iv~s~~~dg~~kGS~RSi~g~~l~--~~l~~~~~~~ll~~~GGH~~AaG~ti~~~~-l~~f~~~l~  461 (600)
T Consensus         1 ~~~vi~~~~-~~~k~~~s~rs~~~~~~~~~~i~~~~~~~-~gG~GGGh~~aAg~~~~~~~~~~~~~~~~~   68 (69)
T pfam02272         1 DKPVVLFAE-EDGKVKVSARSSKGLDVKGGELLKEVAEI-LGGGGGGHPDAAGAGGKDPSKLEEALELLE   68 (69)
T ss_pred             CCEEEEEEE-CCCEEEEEEEECHHHHHHHHHHHHHHHHH-HCCCCCCCHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             955999981-49959999996578887899999999999-389889975676158998788999999834