HHsearch alignment for GI: 254780901 and conserved domain: pfam03345
>pfam03345 DDOST_48kD Oligosaccharyltransferase 48 kDa subunit beta. Members of this family are involved in asparagine-linked protein glycosylation. In particular, dolichyl-diphosphooligosaccharide-protein glycosyltransferase (DDOST), also known as oligosaccharyltransferase EC:2.4.1.119, transfers the high-mannose sugar GlcNAc(2)-Man(9)-Glc(3) from a dolichol-linked donor to an asparagine acceptor in a consensus Asn-X-Ser/Thr motif. In most eukaryotes, the DDOST complex is composed of three subunits, which in humans are described as a 48kD subunit, ribophorin I, and ribophorin II. However, the yeast DDOST appears to consist of six subunits (alpha, beta, gamma, delta, epsilon, zeta). The yeast beta subunit is a 45kD polypeptide, previously discovered as the Wbp1 protein, with known sequence similarity to the human 48kD subunit and the other orthologues. This family includes the 48kD-like subunits from several eukaryotes; it also includes the yeast DDOST beta subunit Wbp1.
Probab=94.01 E-value=0.62 Score=27.25 Aligned_cols=95 Identities=16% Similarity=0.336 Sum_probs=68.9
Q ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCC---------------------CCCCCC--CCHHHHHHHH
Q ss_conf 77997999940788615289999999997699479980787---------------------433668--8978988742
Q gi|254780901|r 90 YNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR---------------------IVDGYG--PNPSLMEKFI 146 (600)
Q Consensus 90 ~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R---------------------~~eGYG--l~~~~i~~~~ 146 (600)
T Consensus 14 ~~g~r~LVlld~~~~k-~~~S~F~~~L~~rG~~lt~~~~~d~~l~L~~~Ge~lYDhlIlf~p~~k~~g~~ls~~~l~~Fi 92 (439)
T pfam03345 14 SSGGRTLVVLDSLSEK-ETYSTFFKSLESRGYELTFKTPKDESLSLFKYGERLYDHLILFPPKSKGLGPSLSPKKLLDFI 92 (439)
T ss_pred CCCCEEEEEECCCCCH-HHHHHHHHHHHHCCCEEEEECCCCCCCEEECCCCCCCCEEEEECCCHHHHCCCCCHHHHHHHH
T ss_conf 6897189994576315-679999999986796489955888752200078300346999366414407778989999998
Q ss_pred HCCCCEEEEECCCCCCHHHHHHHHHCCCCE-----EEECCCCCC
Q ss_conf 026868999648876234555554179827-----996154476
Q gi|254780901|r 147 NEGAQLIITVDCGSTSYDALQYATNQGIDV-----IVIDHHQVK 185 (600)
Q Consensus 147 ~~g~~LiItvD~Gi~~~e~i~~a~~~Gidv-----IVtDHH~~~ 185 (600)
T Consensus 93 d~GGNilva~s~~~~~~~ir~l~~E~gi~~~~~~~~viDHfnyd 136 (439)
T pfam03345 93 DKGGNVLVALSSETTPDAIRELLSELGIELDERNTVVVDHFNYD 136 (439)
T ss_pred HCCCCEEEEECCCCCCHHHHHHHHHCCCEECCCCCEEEECCCCC
T ss_conf 68997999938876758999999985915678898677414676