Query gi|254780901|ref|YP_003065314.1| single-stranded-DNA-specific exonuclease protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 600 No_of_seqs 191 out of 2089 Neff 6.5 Searched_HMMs 23785 Date Tue May 31 23:18:45 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780901.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2zxr_A Single-stranded DNA spe 100.0 0 0 1136.5 45.0 532 14-597 3-535 (666) 2 3dev_A SH1221; alpha-beta prot 99.9 2.5E-21 1.1E-25 185.0 18.2 301 78-466 1-314 (320) 3 3dma_A Exopolyphosphatase-rela 99.8 7.5E-16 3.1E-20 142.2 23.2 306 78-467 6-337 (343) 4 1wpn_A Manganese-dependent ino 97.8 0.0001 4.2E-09 55.2 8.3 147 93-260 2-157 (188) 5 2haw_A Manganese-dependent ino 97.7 0.00023 9.6E-09 52.4 8.8 140 93-260 2-157 (309) 6 1k20_A Manganese-dependent ino 96.6 0.011 4.8E-07 39.1 8.1 144 94-259 2-157 (310) 7 2eb0_A Manganese-dependent ino 95.9 0.051 2.2E-06 34.0 8.7 139 96-259 3-154 (307) 8 3kdf_D Replication protein A 3 95.6 0.16 6.7E-06 30.2 10.4 86 507-596 20-113 (132) 9 1nri_A Hypothetical protein HI 95.4 0.18 7.6E-06 29.7 15.2 182 73-273 52-253 (306) 10 2i2w_A Phosphoheptose isomeras 95.4 0.18 7.7E-06 29.7 10.2 125 70-198 42-184 (212) 11 2pi2_A Replication protein A 3 94.0 0.37 1.6E-05 27.3 10.6 83 510-596 63-153 (270) 12 2zvf_A Alanyl-tRNA synthetase; 94.0 0.38 1.6E-05 27.2 15.6 138 327-468 32-170 (171) 13 3kf6_A Protein STN1; OB fold, 93.9 0.39 1.6E-05 27.1 11.0 89 503-595 32-129 (159) 14 1iuk_A Hypothetical protein TT 93.3 0.35 1.5E-05 27.5 7.4 95 83-179 4-100 (140) 15 2yva_A DNAA initiator-associat 92.1 0.47 2E-05 26.5 6.8 101 76-180 25-143 (196) 16 2htm_A Thiazole biosynthesis p 91.3 0.82 3.4E-05 24.6 8.6 101 64-177 102-204 (268) 17 1nmo_A Hypothetical protein YB 90.9 0.44 1.8E-05 26.7 5.6 29 150-181 36-64 (247) 18 1xm3_A Thiazole biosynthesis p 90.8 0.9 3.8E-05 24.3 9.7 101 63-177 103-204 (264) 19 3l49_A ABC sugar (ribose) tran 89.6 1.1 4.7E-05 23.6 7.9 90 91-184 4-97 (291) 20 1tk9_A Phosphoheptose isomeras 89.2 1.2 5E-05 23.3 6.8 103 75-181 25-145 (188) 21 2qb7_A Exopolyphosphatase; A/B 88.4 0.46 1.9E-05 26.6 4.1 34 87-120 21-57 (397) 22 3cvj_A Putative phosphoheptose 88.3 1.3 5.7E-05 22.9 12.5 100 76-180 26-142 (243) 23 3brs_A Periplasmic binding pro 86.1 1.8 7.4E-05 22.0 6.4 71 112-183 29-100 (289) 24 1t70_A Phosphatase; crystal, X 85.1 1.1 4.7E-05 23.6 4.6 70 94-166 2-73 (255) 25 2o55_A Putative glycerophospho 84.4 1 4.2E-05 23.9 4.1 29 161-189 24-52 (258) 26 2hqs_H Peptidoglycan-associate 84.2 1 4.3E-05 23.9 4.1 97 60-183 9-115 (118) 27 3ktd_A Prephenate dehydrogenas 84.1 2.1 9E-05 21.4 6.3 35 90-129 6-40 (341) 28 2z06_A Putative uncharacterize 84.0 1.8 7.4E-05 22.0 5.2 75 94-171 2-79 (252) 29 3ke8_A 4-hydroxy-3-methylbut-2 82.8 2.3 9.6E-05 21.1 5.4 108 71-185 17-135 (326) 30 3dnf_A ISPH, LYTB, 4-hydroxy-3 82.4 2.5 0.0001 20.9 6.5 106 71-184 8-124 (297) 31 2fyw_A Conserved hypothetical 81.0 1.7 7.1E-05 22.1 4.2 31 150-183 39-69 (267) 32 1ka9_F Imidazole glycerol phos 80.9 1.8 7.7E-05 21.9 4.4 70 112-182 36-106 (252) 33 2vk2_A YTFQ, ABC transporter p 80.8 2.8 0.00012 20.5 7.6 73 111-186 23-96 (306) 34 3h75_A Periplasmic sugar-bindi 80.2 2.9 0.00012 20.4 9.4 69 116-187 30-100 (350) 35 1wv2_A Thiazole moeity, thiazo 79.8 3 0.00012 20.3 9.9 96 74-177 117-213 (265) 36 2xbl_A Phosphoheptose isomeras 79.6 3 0.00013 20.2 11.4 108 70-181 26-151 (198) 37 3eaf_A ABC transporter, substr 78.7 2.2 9.2E-05 21.3 4.2 21 79-99 62-82 (391) 38 1pvv_A Otcase, ornithine carba 77.3 3.1 0.00013 20.1 4.6 25 104-128 55-80 (315) 39 2nyd_A UPF0135 protein SA1388; 75.5 2.8 0.00012 20.5 4.0 29 150-181 41-69 (370) 40 1thf_D HISF protein; thermophI 75.4 3.8 0.00016 19.4 5.2 69 112-181 35-104 (253) 41 3fxa_A SIS domain protein; YP_ 74.9 3.9 0.00017 19.3 10.7 91 77-182 33-128 (201) 42 2h3h_A Sugar ABC transporter, 74.7 4 0.00017 19.2 7.0 68 115-184 25-93 (313) 43 3ggo_A Prephenate dehydrogenas 74.2 4.1 0.00017 19.1 6.4 79 93-184 34-130 (314) 44 1h5y_A HISF; histidine biosynt 73.7 4.1 0.00017 19.1 4.5 70 112-182 38-108 (253) 45 2anu_A Hypothetical protein TM 73.7 1.7 7E-05 22.2 2.5 30 157-186 32-62 (255) 46 2d59_A Hypothetical protein PH 73.7 4.2 0.00018 19.1 6.6 94 83-179 13-107 (144) 47 3l6u_A ABC-type sugar transpor 73.6 4.2 0.00018 19.0 8.1 70 113-185 31-101 (293) 48 3ju3_A Probable 2-oxoacid ferr 73.6 4.2 0.00018 19.0 7.3 67 91-161 2-76 (118) 49 1zq6_A Otcase, ornithine carba 73.2 4.3 0.00018 19.0 8.2 12 170-181 122-133 (359) 50 1t71_A Phosphatase, conserved; 73.0 4.4 0.00018 18.9 5.3 76 91-169 3-83 (281) 51 2w6r_A Imidazole glycerol phos 72.7 4.4 0.00019 18.9 6.7 68 113-181 36-104 (266) 52 1x92_A APC5045, phosphoheptose 71.8 4.6 0.00019 18.7 11.0 100 76-179 29-146 (199) 53 1rdu_A Conserved hypothetical 71.6 3.2 0.00013 20.0 3.5 53 126-181 39-91 (116) 54 2otd_A Glycerophosphodiester p 71.4 4.7 0.0002 18.7 4.6 29 161-189 22-50 (247) 55 1t9b_A Acetolactate synthase, 71.2 3.9 0.00016 19.3 3.9 32 449-487 608-639 (677) 56 2wje_A CPS4B, tyrosine-protein 70.6 2.2 9.3E-05 21.2 2.5 27 156-182 16-47 (247) 57 3ff4_A Uncharacterized protein 70.3 4.9 0.00021 18.5 7.4 84 92-179 4-88 (122) 58 2duw_A Putative COA-binding pr 69.4 5.2 0.00022 18.4 9.0 93 85-179 6-100 (145) 59 1gud_A ALBP, D-allose-binding 69.3 5.2 0.00022 18.4 6.5 73 114-187 25-98 (288) 60 3dm5_A SRP54, signal recogniti 69.2 5.2 0.00022 18.3 5.1 81 94-181 102-190 (443) 61 1ecf_A Glutamine phosphoribosy 68.6 5.3 0.00022 18.2 7.0 21 109-137 13-33 (504) 62 2q5c_A NTRC family transcripti 68.5 5.3 0.00022 18.2 7.7 130 26-179 37-166 (196) 63 2gx8_A NIF3-related protein; s 68.4 3.9 0.00016 19.3 3.4 30 150-183 65-94 (397) 64 1tks_A 3,4-dihydroxy-2-butanon 68.3 1.4 5.9E-05 22.8 1.1 92 80-171 6-112 (204) 65 3ipc_A ABC transporter, substr 67.0 5.7 0.00024 18.0 8.5 43 141-183 61-103 (356) 66 1zcc_A Glycerophosphodiester p 66.5 5.7 0.00024 18.0 3.9 28 161-188 17-44 (248) 67 3etn_A Putative phosphosugar i 66.4 5.8 0.00025 17.9 12.9 95 76-182 42-145 (220) 68 2c31_A Oxalyl-COA decarboxylas 66.0 5.9 0.00025 17.9 5.0 80 79-158 200-281 (568) 69 2pz0_A Glycerophosphoryl diest 65.5 4 0.00017 19.3 3.0 29 161-189 27-55 (252) 70 3lkb_A Probable branched-chain 65.5 6.1 0.00026 17.8 9.0 11 167-177 92-102 (392) 71 1vzw_A Phosphoribosyl isomeras 64.9 6.2 0.00026 17.7 6.1 67 112-180 37-104 (244) 72 1jeo_A MJ1247, hypothetical pr 64.6 6.3 0.00026 17.7 14.0 91 77-184 25-121 (180) 73 3jx9_A Putative phosphoheptose 64.3 6.4 0.00027 17.6 4.2 122 77-217 23-156 (170) 74 2yyb_A Hypothetical protein TT 63.4 6.3 0.00027 17.7 3.7 30 150-182 37-66 (242) 75 2dwu_A Glutamate racemase; iso 63.4 6.6 0.00028 17.5 5.2 80 88-172 3-91 (276) 76 2jfz_A Glutamate racemase; cel 63.2 6.6 0.00028 17.5 4.6 79 94-177 2-90 (255) 77 2kkn_A Uncharacterized protein 62.5 5.4 0.00023 18.2 3.2 33 165-197 120-153 (178) 78 2x5o_A UDP-N-acetylmuramoylala 62.0 6.9 0.00029 17.3 6.1 76 91-177 4-92 (439) 79 3nnp_A Xometc, cystathionine g 62.0 7 0.00029 17.3 7.1 92 77-179 91-188 (400) 80 3mt0_A Uncharacterized protein 61.7 7 0.0003 17.3 7.0 97 87-184 2-100 (290) 81 1j8m_F SRP54, signal recogniti 61.3 7.1 0.0003 17.3 6.3 13 390-402 261-273 (297) 82 2g5c_A Prephenate dehydrogenas 61.2 7.2 0.0003 17.2 6.7 78 93-183 2-97 (281) 83 2aee_A OPRT, oprtase, orotate 61.0 7.2 0.0003 17.2 4.1 101 66-177 42-148 (211) 84 2oho_A Glutamate racemase; iso 60.3 7.4 0.00031 17.1 6.4 82 91-177 11-102 (273) 85 2z9v_A Aspartate aminotransfer 60.2 7.4 0.00031 17.1 7.9 114 56-182 50-173 (392) 86 2a22_A Vacuolar protein sortin 60.0 7.5 0.00031 17.1 4.1 30 168-197 136-166 (215) 87 1ml4_A Aspartate transcarbamoy 59.7 7.6 0.00032 17.1 7.3 53 72-128 16-78 (308) 88 2zkq_b 40S ribosomal protein S 59.6 7.6 0.00032 17.0 11.2 91 76-178 56-146 (295) 89 3d02_A Putative LACI-type tran 59.5 7.6 0.00032 17.0 7.8 69 112-182 26-95 (303) 90 2iv2_X Formate dehydrogenase H 59.5 7.6 0.00032 17.0 8.6 119 78-203 80-223 (715) 91 3m9w_A D-xylose-binding peripl 59.2 7.7 0.00032 17.0 7.7 71 109-182 21-92 (313) 92 1okg_A Possible 3-mercaptopyru 59.1 7.7 0.00032 17.0 4.3 51 72-124 74-125 (373) 93 3loq_A Universal stress protei 59.0 7.7 0.00033 17.0 6.8 37 369-405 253-292 (294) 94 1g57_A DHBP synthase, 3,4-dihy 58.6 4.5 0.00019 18.8 2.2 72 80-179 14-85 (217) 95 2vk8_A Pyruvate decarboxylase 58.0 7.1 0.0003 17.3 3.1 84 79-164 198-293 (563) 96 1tjy_A Sugar transport protein 57.6 8.1 0.00034 16.8 8.7 91 91-185 2-97 (316) 97 3hut_A Putative branched-chain 57.3 8.2 0.00035 16.8 8.7 24 93-116 44-68 (358) 98 1y5e_A Molybdenum cofactor bio 56.5 8.4 0.00036 16.7 6.0 81 92-178 13-102 (169) 99 2p1z_A Phosphoribosyltransfera 56.5 8.4 0.00036 16.7 4.4 108 58-177 33-145 (180) 100 1m65_A Hypothetical protein YC 56.4 5 0.00021 18.4 2.2 26 157-182 14-41 (245) 101 3ksm_A ABC-type sugar transpor 56.3 8.5 0.00036 16.6 6.3 72 113-185 23-96 (276) 102 2oog_A Glycerophosphoryl diest 56.0 6.4 0.00027 17.6 2.7 28 161-188 39-67 (287) 103 3ch0_A Glycerophosphodiester p 55.9 7.1 0.0003 17.3 2.9 24 162-185 25-48 (272) 104 3jte_A Response regulator rece 55.9 2.6 0.00011 20.7 0.6 13 173-185 49-61 (143) 105 3l12_A Putative glycerophospho 55.7 8.7 0.00037 16.6 4.1 29 161-189 33-61 (313) 106 2x7x_A Sensor protein; transfe 55.4 8.8 0.00037 16.5 6.0 71 112-185 28-99 (325) 107 3out_A Glutamate racemase; str 54.9 8.9 0.00038 16.5 7.3 80 88-172 3-91 (268) 108 2iks_A DNA-binding transcripti 54.8 9 0.00038 16.5 6.8 70 113-185 43-112 (293) 109 3dzb_A Prephenate dehydrogenas 54.5 9.1 0.00038 16.4 5.4 31 91-126 4-34 (317) 110 3lk7_A UDP-N-acetylmuramoylala 54.2 9.2 0.00038 16.4 9.1 35 88-125 108-143 (451) 111 2g2c_A Putative molybdenum cof 54.0 5.3 0.00022 18.2 2.0 59 94-156 9-76 (167) 112 2w37_A Ornithine carbamoyltran 54.0 9.2 0.00039 16.4 5.8 54 71-127 38-100 (359) 113 2vvt_A Glutamate racemase; iso 53.8 9.3 0.00039 16.4 4.6 84 89-177 21-114 (290) 114 2fqx_A Membrane lipoprotein TM 53.2 9.5 0.0004 16.3 8.8 109 92-213 4-119 (318) 115 2jgn_A DBX, DDX3, ATP-dependen 53.1 9.5 0.0004 16.3 7.9 67 85-158 39-105 (185) 116 3ks6_A Glycerophosphoryl diest 53.1 9.5 0.0004 16.3 7.5 28 161-188 18-45 (250) 117 2j16_A SDP-1, tyrosine-protein 52.4 9.7 0.00041 16.2 5.7 24 76-99 101-124 (182) 118 2r25_B Osmosensing histidine p 52.1 9.8 0.00041 16.2 3.1 21 444-464 105-125 (133) 119 3a2k_A TRNA(Ile)-lysidine synt 52.0 9.8 0.00041 16.2 5.7 87 89-184 15-130 (464) 120 2gzm_A Glutamate racemase; enz 51.9 9.9 0.00042 16.1 5.4 81 92-177 3-93 (267) 121 1tqx_A D-ribulose-5-phosphate 51.7 9.9 0.00042 16.1 3.7 11 77-87 19-29 (227) 122 3i45_A Twin-arginine transloca 51.7 10 0.00042 16.1 8.8 38 142-179 65-103 (387) 123 2i6u_A Otcase, ornithine carba 51.6 10 0.00042 16.1 7.0 91 75-183 133-227 (307) 124 1qyc_A Phenylcoumaran benzylic 51.5 10 0.00042 16.1 7.6 79 90-178 2-82 (308) 125 3f1y_A Mannosyl-3-phosphoglyce 51.4 10 0.00042 16.1 4.7 61 116-177 89-152 (387) 126 1k4i_A 3,4-dihydroxy-2-butanon 50.9 9.5 0.0004 16.3 2.9 60 74-137 11-79 (233) 127 3hv2_A Response regulator/HD d 50.5 8.9 0.00038 16.5 2.7 26 161-186 46-71 (153) 128 2q28_A Oxalyl-COA decarboxylas 50.5 10 0.00043 16.0 4.9 84 78-161 197-282 (564) 129 2pjk_A 178AA long hypothetical 50.3 10 0.00044 16.0 4.6 46 107-156 40-88 (178) 130 2jfq_A Glutamate racemase; cel 49.6 11 0.00045 15.9 5.5 81 92-177 22-112 (286) 131 1vkf_A Glycerol uptake operon 49.6 11 0.00045 15.9 7.0 72 106-184 42-117 (188) 132 2pw9_A Putative formate dehydr 49.5 11 0.00045 15.9 3.7 15 410-425 241-255 (268) 133 1vd6_A Glycerophosphoryl diest 49.0 11 0.00046 15.8 5.1 29 161-189 23-51 (224) 134 1gm5_A RECG; helicase, replica 48.8 11 0.00046 15.8 8.7 22 112-133 127-152 (780) 135 1vp8_A Hypothetical protein AF 48.6 11 0.00046 15.8 3.2 40 142-183 36-76 (201) 136 3cog_A Cystathionine gamma-lya 47.5 11 0.00048 15.7 9.0 91 82-183 95-191 (403) 137 1ao0_A Glutamine phosphoribosy 47.4 11 0.00048 15.6 6.3 23 108-138 12-34 (459) 138 1b73_A Glutamate racemase; iso 47.4 11 0.00048 15.6 5.7 43 94-140 2-44 (254) 139 3icg_A Endoglucanase D; cellul 47.1 12 0.00049 15.6 6.0 20 165-184 91-110 (515) 140 3k9f_C DNA topoisomerase 4 sub 47.1 9.8 0.00041 16.2 2.4 22 94-115 121-142 (268) 141 2is8_A Molybdopterin biosynthe 46.6 12 0.00049 15.6 3.3 46 107-156 21-69 (164) 142 1lci_A Luciferase; oxidoreduct 46.4 12 0.0005 15.5 8.3 101 73-184 51-157 (550) 143 1z2w_A Vacuolar protein sortin 46.3 12 0.0005 15.5 2.9 30 168-197 112-142 (192) 144 2g8l_A 287AA long hypothetical 46.2 12 0.0005 15.5 5.3 25 480-513 247-271 (299) 145 1mkz_A Molybdenum cofactor bio 45.8 12 0.00051 15.5 6.5 61 95-163 15-81 (172) 146 3m3h_A OPRT, oprtase, orotate 45.6 12 0.00051 15.5 4.0 125 41-177 27-168 (234) 147 2vbi_A Pyruvate decarboxylase; 44.9 12 0.00052 15.4 5.0 104 76-181 193-309 (566) 148 2dri_A D-ribose-binding protei 44.4 13 0.00053 15.3 6.8 68 113-183 24-92 (271) 149 1vkr_A Mannitol-specific PTS s 44.3 10 0.00042 16.1 2.1 25 89-116 10-34 (125) 150 2uz1_A Benzaldehyde lyase; thi 44.1 13 0.00053 15.3 3.7 89 73-162 185-282 (563) 151 1di6_A MOGA, molybdenum cofact 44.1 13 0.00054 15.3 4.8 59 95-156 8-73 (195) 152 3f0h_A Aminotransferase; RER07 44.1 13 0.00054 15.3 9.3 98 74-179 75-180 (376) 153 1y81_A Conserved hypothetical 44.1 13 0.00054 15.3 7.9 88 89-179 11-99 (138) 154 2o8n_A APOA-I binding protein; 43.7 13 0.00054 15.2 7.6 85 316-403 26-114 (265) 155 3m6m_D Sensory/regulatory prot 43.3 12 0.00049 15.6 2.3 58 91-162 13-70 (143) 156 1ovm_A Indole-3-pyruvate decar 43.1 13 0.00055 15.2 4.4 105 77-182 194-310 (552) 157 3g1w_A Sugar ABC transporter; 42.9 13 0.00056 15.2 7.1 70 113-184 27-97 (305) 158 2p2e_A Putative Fe-S biosynthe 42.9 13 0.00056 15.2 2.8 27 79-107 9-35 (128) 159 1z9f_A Single-strand binding p 42.8 13 0.00056 15.1 7.0 53 540-594 64-121 (153) 160 3m4i_A DNA gyrase subunit B; G 42.8 11 0.00044 15.9 2.1 29 91-119 90-118 (242) 161 2hy5_A Putative sulfurtransfer 42.8 13 0.00053 15.3 2.4 21 78-98 17-38 (130) 162 2k0z_A Uncharacterized protein 42.7 13 0.00056 15.1 3.2 30 91-124 55-84 (110) 163 1mxs_A KDPG aldolase; 2-keto-3 42.7 13 0.00056 15.1 6.2 104 70-183 4-108 (225) 164 3cwo_X Beta/alpha-barrel prote 42.7 13 0.00056 15.1 2.9 33 155-187 7-39 (237) 165 3kl4_A SRP54, signal recogniti 42.5 13 0.00056 15.1 3.5 79 95-180 100-186 (433) 166 1pqw_A Polyketide synthase; ro 42.5 13 0.00056 15.1 5.8 32 90-125 37-68 (198) 167 1m1n_B Nitrogenase molybdenum- 42.4 13 0.00057 15.1 7.5 54 339-404 343-396 (522) 168 2eyq_A TRCF, transcription-rep 42.2 14 0.00057 15.1 9.7 168 12-197 547-733 (1151) 169 1wv9_A Rhodanese homolog TT165 42.2 12 0.0005 15.5 2.3 25 152-176 56-80 (94) 170 3nuh_B DNA gyrase subunit B; t 41.9 13 0.00053 15.3 2.4 29 91-119 105-133 (420) 171 2hmt_A YUAA protein; RCK, KTN, 41.6 14 0.00058 15.0 2.8 29 92-125 6-34 (144) 172 3lop_A Substrate binding perip 41.4 14 0.00058 15.0 9.0 17 490-506 310-326 (364) 173 3gbv_A Putative LACI-family tr 41.3 14 0.00059 15.0 5.2 65 118-184 40-105 (304) 174 3nhm_A Response regulator; pro 41.2 14 0.00059 15.0 4.0 19 139-158 37-55 (133) 175 3c85_A Putative glutathione-re 41.1 14 0.00059 15.0 2.9 126 73-222 42-175 (183) 176 3gve_A YFKN protein; alpha-bet 41.0 14 0.00059 14.9 5.1 43 141-184 46-111 (341) 177 2og2_A Putative signal recogni 41.0 14 0.00059 14.9 8.5 10 384-393 175-184 (359) 178 1gd9_A Aspartate aminotransfer 40.9 14 0.00059 14.9 7.3 101 75-183 93-203 (389) 179 1ohe_A CDC14B, CDC14B2 phospha 40.8 14 0.0006 14.9 2.8 41 72-112 53-97 (348) 180 1u9y_A RPPK;, ribose-phosphate 40.8 14 0.0006 14.9 7.7 72 91-162 46-128 (284) 181 1vi6_A 30S ribosomal protein S 40.7 14 0.0006 14.9 9.6 93 75-178 46-143 (208) 182 1srr_A SPO0F, sporulation resp 40.3 13 0.00053 15.3 2.1 54 92-159 3-56 (124) 183 3n0w_A ABC branched chain amin 40.3 14 0.00061 14.9 6.6 38 141-178 64-102 (379) 184 2rgw_A Aspartate carbamoyltran 40.3 14 0.00061 14.9 7.5 50 107-156 52-103 (306) 185 2jk1_A HUPR, hydrogenase trans 40.2 14 0.00061 14.9 4.9 44 140-187 15-58 (139) 186 1jbe_A Chemotaxis protein CHEY 40.2 12 0.00051 15.5 2.0 24 94-121 6-29 (128) 187 3csu_A Protein (aspartate carb 39.8 15 0.00062 14.8 7.8 20 192-211 122-141 (310) 188 2h06_A Ribose-phosphate pyroph 39.7 15 0.00062 14.8 8.0 75 91-165 49-136 (326) 189 2rgy_A Transcriptional regulat 39.6 15 0.00062 14.8 7.1 43 140-183 58-100 (290) 190 1zuw_A Glutamate racemase 1; ( 39.5 15 0.00062 14.8 7.0 81 92-177 3-94 (272) 191 1v5x_A PRA isomerase, phosphor 39.5 11 0.00046 15.8 1.7 25 158-182 6-30 (203) 192 2wdc_A SOXB, sulfur oxidation 39.2 15 0.00063 14.7 4.5 67 75-147 101-178 (562) 193 3h1g_A Chemotaxis protein CHEY 39.2 15 0.00063 14.7 3.1 12 110-121 19-30 (129) 194 1m3s_A Hypothetical protein YC 39.2 15 0.00063 14.7 11.9 88 80-184 25-118 (186) 195 2rfv_A Methionine gamma-lyase; 39.1 15 0.00063 14.7 9.1 93 77-182 88-187 (398) 196 1ozh_A ALS, acetolactate synth 39.0 15 0.00063 14.7 5.2 81 77-159 192-284 (566) 197 2esb_A Dual specificity protei 39.0 15 0.00063 14.7 3.8 11 168-178 40-50 (188) 198 3inp_A D-ribulose-phosphate 3- 38.9 15 0.00063 14.7 4.4 95 77-179 41-140 (246) 199 1zgz_A Torcad operon transcrip 38.8 15 0.00064 14.7 2.7 22 164-185 37-58 (122) 200 1edg_A Endoglucanase A; family 38.6 15 0.00064 14.7 5.8 22 164-185 105-126 (380) 201 2vqe_B 30S ribosomal protein S 38.5 15 0.00064 14.7 5.5 102 74-184 47-193 (256) 202 1kwg_A Beta-galactosidase; TIM 38.4 15 0.00064 14.7 3.8 27 71-97 109-135 (645) 203 1hdo_A Biliverdin IX beta redu 38.3 15 0.00065 14.6 7.1 71 91-178 2-72 (206) 204 2f1k_A Prephenate dehydrogenas 38.3 15 0.00065 14.6 7.4 28 94-126 2-29 (279) 205 1nsj_A PRAI, phosphoribosyl an 38.2 12 0.00049 15.6 1.7 21 158-178 7-27 (205) 206 1p3d_A UDP-N-acetylmuramate--a 38.2 15 0.00065 14.6 7.0 29 92-124 18-46 (475) 207 2c0r_A PSAT, phosphoserine ami 38.0 16 0.00065 14.6 3.5 54 412-466 301-360 (362) 208 3lte_A Response regulator; str 37.9 16 0.00066 14.6 7.2 69 88-170 2-70 (132) 209 1u9l_A Transcription elongatio 37.9 16 0.00066 14.6 4.6 55 30-89 5-60 (70) 210 2h5g_A Delta 1-pyrroline-5-car 37.8 11 0.00047 15.7 1.5 42 409-462 339-381 (463) 211 1p6q_A CHEY2; chemotaxis, sign 37.8 16 0.00066 14.6 2.8 27 92-122 6-32 (129) 212 2xkj_E Topoisomerase IV; type 37.4 14 0.00061 14.9 2.1 28 92-119 114-141 (767) 213 2vw9_A Single-stranded DNA bin 37.3 16 0.00067 14.5 5.4 53 540-594 50-107 (134) 214 3ihg_A RDME; flavoenzyme, anth 37.3 16 0.00067 14.5 3.2 24 336-359 348-371 (535) 215 2yrr_A Aminotransferase, class 37.3 16 0.00067 14.5 4.4 52 413-464 291-350 (353) 216 3ckj_A Putative uncharacterize 36.8 16 0.00068 14.5 4.9 55 120-177 47-104 (329) 217 1z45_A GAL10 bifunctional prot 36.6 16 0.00068 14.5 8.0 34 89-126 8-41 (699) 218 2img_A Dual specificity protei 36.5 16 0.00069 14.4 3.6 51 122-176 8-59 (151) 219 3cu5_A Two component transcrip 36.4 16 0.00069 14.4 2.6 23 380-402 60-84 (141) 220 1fuk_A Eukaryotic initiation f 36.4 16 0.00069 14.4 8.1 71 81-159 20-90 (165) 221 3emu_A Leucine rich repeat and 36.3 16 0.00069 14.4 4.6 21 78-98 73-93 (161) 222 2bma_A Glutamate dehydrogenase 36.2 16 0.00069 14.4 7.6 17 206-222 227-243 (470) 223 2qy9_A Cell division protein F 36.0 17 0.0007 14.4 8.3 14 390-403 266-279 (309) 224 2p6n_A ATP-dependent RNA helic 35.8 17 0.0007 14.4 5.4 65 84-159 45-114 (191) 225 1ogy_A Periplasmic nitrate red 35.6 17 0.00071 14.3 8.5 114 78-197 97-232 (802) 226 1xdw_A NAD+-dependent (R)-2-hy 35.3 17 0.00071 14.3 7.3 51 369-427 200-250 (331) 227 1m5w_A Pyridoxal phosphate bio 35.3 17 0.00071 14.3 7.7 84 82-177 58-152 (243) 228 1dbw_A Transcriptional regulat 35.0 17 0.00072 14.3 2.7 15 110-124 17-31 (126) 229 1vlj_A NADH-dependent butanol 35.0 17 0.00072 14.3 4.9 61 93-159 44-111 (407) 230 1tqj_A Ribulose-phosphate 3-ep 35.0 17 0.00072 14.3 3.8 92 75-179 16-118 (230) 231 2dc1_A L-aspartate dehydrogena 35.0 17 0.00072 14.3 6.6 77 94-178 2-79 (236) 232 3f8d_A Thioredoxin reductase ( 34.9 17 0.0007 14.4 2.1 49 138-188 4-52 (323) 233 1s3l_A Hypothetical protein MJ 34.9 17 0.00072 14.3 7.3 32 167-198 131-163 (190) 234 2pv7_A T-protein [includes: ch 34.9 17 0.00072 14.3 7.2 30 93-126 22-51 (298) 235 2pl1_A Transcriptional regulat 34.5 17 0.00073 14.2 2.9 16 109-124 13-28 (121) 236 3mz2_A Glycerophosphoryl diest 34.5 17 0.00074 14.2 3.7 27 162-188 49-75 (292) 237 3ist_A Glutamate racemase; str 34.2 18 0.00074 14.2 5.7 81 92-177 5-95 (269) 238 3d3j_A Enhancer of mRNA-decapp 34.2 18 0.00074 14.2 3.5 37 366-403 131-167 (306) 239 1h1y_A D-ribulose-5-phosphate 34.0 18 0.00075 14.2 3.6 39 140-178 78-118 (228) 240 2j37_W Signal recognition part 33.7 18 0.00075 14.1 7.7 80 94-180 103-190 (504) 241 2nt2_A Protein phosphatase sli 33.6 18 0.00076 14.1 3.3 31 75-108 64-94 (145) 242 1rpx_A Protein (ribulose-phosp 33.6 18 0.00076 14.1 4.0 95 76-178 23-123 (230) 243 3lp6_A Phosphoribosylaminoimid 33.4 18 0.00076 14.1 3.8 46 113-162 27-74 (174) 244 2rjo_A Twin-arginine transloca 33.2 18 0.00077 14.1 3.9 44 141-184 53-99 (332) 245 1wl8_A GMP synthase [glutamine 33.1 18 0.00077 14.1 3.1 35 152-186 2-37 (189) 246 2r0c_A REBC; flavin adenine di 33.1 18 0.00077 14.0 3.3 22 336-357 356-377 (549) 247 1srv_A Protein (groel (HSP60 c 33.0 18 0.00077 14.0 5.9 99 73-181 34-137 (145) 248 1v5e_A Pyruvate oxidase; oxido 33.0 18 0.00077 14.0 4.6 79 79-161 192-281 (590) 249 2k50_A Replication factor A re 32.9 18 0.00077 14.0 7.1 65 528-597 44-113 (115) 250 1eix_A Orotidine 5'-monophosph 32.8 18 0.00077 14.0 2.0 100 78-186 1-104 (245) 251 3i32_A Heat resistant RNA depe 32.8 19 0.00078 14.0 9.9 68 80-159 17-88 (300) 252 3no3_A Glycerophosphodiester p 32.8 19 0.00078 14.0 3.9 28 161-188 22-49 (238) 253 3cf4_G Acetyl-COA decarbonylas 32.6 19 0.00078 14.0 7.7 78 77-158 23-116 (170) 254 1q16_A Respiratory nitrate red 32.6 19 0.00078 14.0 9.4 118 79-203 164-303 (1247) 255 2ffh_A Protein (FFH); SRP54, s 32.4 19 0.00079 14.0 8.9 81 94-181 100-188 (425) 256 2fli_A Ribulose-phosphate 3-ep 32.4 19 0.00079 14.0 4.0 98 75-180 15-116 (220) 257 3clk_A Transcription regulator 32.4 19 0.00079 14.0 5.9 67 113-182 31-97 (290) 258 1dxh_A Ornithine carbamoyltran 32.4 19 0.00079 14.0 8.7 23 106-128 56-79 (335) 259 2aiz_P Outer membrane protein 32.3 19 0.00079 14.0 4.7 71 60-139 33-113 (134) 260 1vlv_A Otcase, ornithine carba 32.2 19 0.00079 13.9 5.4 34 104-137 67-101 (325) 261 3eaq_A Heat resistant RNA depe 32.2 19 0.0008 13.9 7.8 68 81-160 21-92 (212) 262 3lua_A Response regulator rece 32.1 19 0.0008 13.9 2.0 10 174-183 51-60 (140) 263 3foj_A Uncharacterized protein 32.1 19 0.0008 13.9 2.7 29 150-178 57-85 (100) 264 1qgu_B Protein (nitrogenase mo 32.0 19 0.0008 13.9 7.9 53 340-404 341-393 (519) 265 3gk0_A PNP synthase, pyridoxin 32.0 19 0.0008 13.9 7.0 84 82-177 86-180 (278) 266 1dku_A Protein (phosphoribosyl 32.0 19 0.0008 13.9 7.9 72 92-163 56-140 (317) 267 3hz7_A Uncharacterized protein 31.8 19 0.00081 13.9 2.9 33 148-180 28-60 (87) 268 3crn_A Response regulator rece 31.7 19 0.00081 13.9 2.9 17 447-463 102-118 (132) 269 2w3q_A Carbonic anhydrase 2; l 31.6 17 0.00073 14.2 1.7 11 91-101 63-73 (243) 270 3gk5_A Uncharacterized rhodane 31.6 19 0.00081 13.9 2.9 32 89-124 52-83 (108) 271 2yzr_A Pyridoxal biosynthesis 31.5 19 0.00078 14.0 1.8 75 138-225 62-138 (330) 272 2zsk_A PH1733, 226AA long hypo 31.2 20 0.00082 13.8 2.2 21 93-116 2-22 (226) 273 2qh9_A UPF0215 protein AF_1433 31.2 20 0.00082 13.8 3.7 36 367-404 64-100 (184) 274 2wns_A Orotate phosphoribosylt 31.1 20 0.00083 13.8 5.1 102 66-177 36-142 (205) 275 3o6c_A PNP synthase, pyridoxin 31.0 20 0.00083 13.8 7.7 63 112-177 78-149 (260) 276 1jlj_A Gephyrin; globular alph 30.9 20 0.00083 13.8 4.3 51 107-163 34-90 (189) 277 3jyv_B 40S ribosomal protein S 30.9 20 0.00083 13.8 6.6 96 77-183 41-143 (193) 278 3l55_A B-1,4-endoglucanase/cel 30.9 20 0.00083 13.8 2.4 24 164-187 95-118 (353) 279 1zh2_A KDP operon transcriptio 30.8 20 0.00083 13.8 1.9 15 170-184 42-56 (121) 280 2gjl_A Hypothetical protein PA 30.7 20 0.00084 13.8 5.3 66 112-188 88-153 (328) 281 1jx6_A LUXP protein; protein-l 30.6 20 0.00084 13.8 6.6 91 94-185 45-140 (342) 282 1bgv_A Glutamate dehydrogenase 30.3 20 0.00085 13.7 8.5 44 380-428 238-281 (449) 283 3e38_A Two-domain protein cont 30.1 20 0.00084 13.7 1.8 28 157-184 31-59 (343) 284 1yz4_A DUSP15, dual specificit 30.0 20 0.00086 13.7 6.6 13 166-178 26-38 (160) 285 1snn_A DHBP synthase, 3,4-dihy 30.0 20 0.00086 13.7 6.7 90 82-171 4-125 (227) 286 2ab1_A Hypothetical protein; H 29.9 20 0.00086 13.7 4.9 47 136-183 48-99 (122) 287 1hjs_A Beta-1,4-galactanase; 4 29.9 20 0.00086 13.7 5.5 55 131-185 22-85 (332) 288 3k8a_A Putative primosomal rep 29.9 20 0.00086 13.7 10.1 50 540-594 54-103 (103) 289 1xvl_A Mn transporter, MNTC pr 29.8 21 0.00087 13.7 3.0 60 91-160 42-105 (321) 290 1toa_A Tromp-1, protein (perip 29.5 21 0.00088 13.6 4.7 53 106-160 42-98 (313) 291 3c1o_A Eugenol synthase; pheny 29.5 21 0.00088 13.6 7.5 76 92-178 4-82 (321) 292 1mvo_A PHOP response regulator 29.3 21 0.00088 13.6 2.2 52 93-158 4-55 (136) 293 3gmb_A 2-methyl-3-hydroxypyrid 29.2 21 0.00088 13.6 4.3 43 79-126 34-76 (415) 294 1kid_A Groel (HSP60 class); ch 29.2 21 0.00088 13.6 4.4 100 74-183 53-157 (203) 295 1eo1_A Hypothetical protein MT 29.2 21 0.00088 13.6 4.5 45 134-181 50-94 (124) 296 3i42_A Response regulator rece 29.1 21 0.00089 13.6 2.9 61 92-166 3-63 (127) 297 3bch_A 40S ribosomal protein S 29.1 21 0.00089 13.6 9.6 159 42-225 47-218 (253) 298 3eme_A Rhodanese-like domain p 29.0 21 0.00089 13.6 2.6 28 150-177 57-84 (103) 299 2db3_A ATP-dependent RNA helic 28.9 21 0.00089 13.6 8.6 116 35-179 59-185 (434) 300 2go7_A Hydrolase, haloacid deh 28.8 21 0.0009 13.5 8.7 131 35-179 47-183 (207) 301 3hzh_A Chemotaxis response reg 28.7 21 0.0009 13.5 1.9 20 443-462 134-153 (157) 302 1vky_A S-adenosylmethionine:tR 28.7 21 0.0009 13.5 3.0 12 384-395 260-271 (347) 303 2vbf_A Branched-chain alpha-ke 28.5 22 0.00091 13.5 4.3 90 79-170 215-316 (570) 304 3en2_A Probable primosomal rep 28.3 22 0.00091 13.5 6.4 50 540-593 49-98 (101) 305 2afw_A Glutaminyl-peptide cycl 28.1 22 0.00092 13.5 3.3 19 74-92 48-66 (329) 306 2a6s_A Toxin YOEB; YEFM, antit 28.1 22 0.00092 13.5 2.1 41 490-533 28-69 (84) 307 1dxy_A D-2-hydroxyisocaproate 28.1 22 0.00092 13.4 8.0 35 369-404 199-233 (333) 308 2wfb_A Putative uncharacterize 28.1 16 0.00068 14.4 1.1 43 134-179 52-94 (120) 309 1wy5_A TILS, hypothetical UPF0 28.0 22 0.00092 13.4 6.2 35 80-117 6-46 (317) 310 3brq_A HTH-type transcriptiona 28.0 22 0.00092 13.4 7.4 69 113-184 44-112 (296) 311 2a9v_A GMP synthase; NP_394403 28.0 22 0.00092 13.4 3.4 45 153-197 16-61 (212) 312 1j32_A Aspartate aminotransfer 28.0 22 0.00092 13.4 11.0 101 75-183 96-206 (388) 313 2zbt_A Pyridoxal biosynthesis 27.9 22 0.00093 13.4 2.0 75 138-225 66-142 (297) 314 1vim_A Hypothetical protein AF 27.9 22 0.00093 13.4 10.0 103 80-199 35-143 (200) 315 1udb_A Epimerase, UDP-galactos 27.8 22 0.00093 13.4 7.2 76 94-178 2-78 (338) 316 3eiv_A Single-stranded DNA-bin 27.8 22 0.00093 13.4 5.3 51 539-591 53-108 (199) 317 1zcz_A Bifunctional purine bio 27.5 22 0.00094 13.4 4.0 30 142-178 30-59 (464) 318 3cnb_A DNA-binding response re 27.5 22 0.00094 13.4 2.5 55 90-158 6-62 (143) 319 1ceo_A Cellulase CELC; glycosy 27.3 23 0.00095 13.3 2.2 23 164-186 73-95 (343) 320 3kyj_B CHEY6 protein, putative 27.3 23 0.00095 13.3 3.0 50 137-189 24-76 (145) 321 2a9o_A Response regulator; ess 27.2 23 0.00095 13.3 2.2 18 108-125 13-30 (120) 322 2hcm_A Dual specificity protei 27.1 23 0.00095 13.3 4.0 11 168-178 32-42 (164) 323 2g4r_A MOGA, molybdopterin bio 27.1 23 0.00096 13.3 3.8 58 94-156 7-69 (160) 324 3frk_A QDTB; aminotransferase, 26.9 23 0.00096 13.3 4.1 136 41-185 21-163 (373) 325 1i1q_B Anthranilate synthase c 26.8 22 0.00091 13.5 1.5 33 153-185 3-36 (192) 326 2nqt_A N-acetyl-gamma-glutamyl 26.6 13 0.00055 15.2 0.4 87 87-177 4-108 (352) 327 1y0p_A Fumarate reductase flav 26.6 23 0.00097 13.3 3.1 36 148-184 125-160 (571) 328 3hh8_A Metal ABC transporter s 26.5 23 0.00097 13.2 3.2 59 91-159 14-76 (294) 329 3a10_A Response regulator; pho 26.5 23 0.00098 13.2 2.7 18 444-461 95-112 (116) 330 2nv1_A Pyridoxal biosynthesis 26.5 23 0.00098 13.2 1.9 77 137-226 65-143 (305) 331 2ayx_A Sensor kinase protein R 26.5 23 0.00098 13.2 2.6 116 317-466 129-247 (254) 332 1vjz_A Endoglucanase; TM1752, 26.4 23 0.00098 13.2 1.7 24 165-188 82-105 (341) 333 3ip1_A Alcohol dehydrogenase, 26.4 23 0.00098 13.2 7.2 21 381-401 223-243 (404) 334 3fht_A ATP-dependent RNA helic 26.0 24 0.001 13.2 8.9 116 35-183 28-153 (412) 335 3f6p_A Transcriptional regulat 25.9 24 0.001 13.2 2.6 18 107-124 13-30 (120) 336 2vpi_A GMP synthase; guanine m 25.9 24 0.001 13.2 3.0 46 151-197 25-75 (218) 337 1o2d_A Alcohol dehydrogenase, 25.8 24 0.001 13.2 3.7 73 81-160 28-109 (371) 338 2cc0_A Acetyl-xylan esterase; 25.8 24 0.001 13.2 3.2 26 104-129 13-39 (195) 339 1qo8_A Flavocytochrome C3 fuma 25.8 24 0.001 13.2 2.2 46 139-185 107-156 (566) 340 3c97_A Signal transduction his 25.6 24 0.001 13.1 4.5 53 94-160 12-64 (140) 341 2r79_A Periplasmic binding pro 25.5 24 0.001 13.1 3.7 38 142-180 52-89 (283) 342 3koj_A Uncharacterized protein 25.2 24 0.001 13.1 5.1 49 539-589 53-106 (108) 343 3d3k_A Enhancer of mRNA-decapp 25.2 24 0.001 13.1 6.3 38 366-404 84-121 (259) 344 1vhc_A Putative KHG/KDPG aldol 25.2 24 0.001 13.1 6.0 92 81-182 6-98 (224) 345 1j5w_A Glycyl-tRNA synthetase 25.2 13 0.00056 15.1 0.2 95 77-176 14-115 (298) 346 2q05_A Late protein H1, dual s 25.2 24 0.001 13.1 3.6 18 248-265 165-182 (195) 347 1dbq_A Purine repressor; trans 25.0 25 0.001 13.1 7.5 73 114-189 31-103 (289) 348 1nm3_A Protein HI0572; hybrid, 24.8 25 0.001 13.0 3.4 12 90-101 31-42 (241) 349 2j28_9 Signal recognition part 24.8 16 0.00066 14.6 0.5 28 382-410 223-254 (430) 350 2j8z_A Quinone oxidoreductase; 24.8 25 0.001 13.0 6.3 19 381-399 173-191 (354) 351 3fhw_A Primosomal replication 24.8 25 0.001 13.0 6.3 52 540-595 48-99 (115) 352 3kbq_A Protein TA0487; structu 24.8 25 0.001 13.0 4.8 45 107-156 23-69 (172) 353 3i09_A Periplasmic branched-ch 24.7 25 0.001 13.0 9.3 36 142-177 63-99 (375) 354 3da1_A Glycerol-3-phosphate de 24.5 25 0.0011 13.0 3.9 34 94-127 158-191 (561) 355 1njg_A DNA polymerase III subu 24.5 25 0.0011 13.0 8.4 48 72-122 19-72 (250) 356 3kg2_A Glutamate receptor 2; I 24.4 25 0.0011 13.0 9.5 107 76-184 106-219 (823) 357 2yx6_A Hypothetical protein PH 24.4 25 0.0011 13.0 1.9 40 139-181 53-92 (121) 358 3k2i_A Acyl-coenzyme A thioest 24.4 6.8 0.00028 17.4 -1.4 19 166-184 176-194 (422) 359 1dc7_A NTRC, nitrogen regulati 24.4 8.6 0.00036 16.6 -0.9 19 167-185 41-59 (124) 360 3o0f_A Putative metal-dependen 24.3 25 0.0011 13.0 5.5 56 123-178 15-72 (301) 361 1l6w_A Fructose-6-phosphate al 24.3 25 0.0011 13.0 8.4 97 70-177 27-128 (220) 362 8abp_A L-arabinose-binding pro 24.1 25 0.0011 12.9 8.8 68 113-184 25-93 (306) 363 3f6c_A Positive transcription 23.9 26 0.0011 12.9 3.3 18 445-462 99-116 (134) 364 1qkk_A DCTD, C4-dicarboxylate 23.8 26 0.0011 12.9 2.0 24 162-185 36-59 (155) 365 1oth_A Protein (ornithine tran 23.8 26 0.0011 12.9 2.9 24 106-129 57-81 (321) 366 1u11_A PURE (N5-carboxyaminoim 23.8 26 0.0011 12.9 6.4 70 89-163 18-89 (182) 367 2jep_A Xyloglucanase; family 5 23.6 26 0.0011 12.9 2.6 23 164-186 114-136 (395) 368 2x3n_A Probable FAD-dependent 23.6 26 0.0011 12.9 3.3 10 43-52 21-30 (399) 369 3mc6_A Sphingosine-1-phosphate 23.5 26 0.0011 12.8 5.4 54 417-470 384-440 (497) 370 3grc_A Sensor protein, kinase; 23.5 26 0.0011 12.8 2.9 57 92-162 6-62 (140) 371 1v1q_A Primosomal replication 23.5 26 0.0011 12.8 9.6 51 541-593 67-118 (134) 372 2zay_A Response regulator rece 23.2 26 0.0011 12.8 2.6 55 92-160 8-62 (147) 373 3eq2_A Probable two-component 23.2 26 0.0011 12.8 3.1 45 139-187 18-63 (394) 374 3k4h_A Putative transcriptiona 23.2 26 0.0011 12.8 6.9 67 114-184 37-103 (292) 375 3hsy_A Glutamate receptor 2; l 23.1 27 0.0011 12.8 7.6 38 142-179 53-90 (376) 376 3fem_A Pyridoxine biosynthesis 23.0 27 0.0011 12.8 2.2 76 137-225 61-138 (297) 377 1jfl_A Aspartate racemase; alp 22.9 17 0.00071 14.3 0.4 24 93-119 2-25 (228) 378 1xfi_A Unknown protein; struct 22.8 27 0.0011 12.7 5.3 15 483-497 296-310 (367) 379 3ct6_A PTS-dependent dihydroxy 22.7 27 0.0011 12.7 6.0 39 132-171 39-79 (131) 380 3hzu_A Thiosulfate sulfurtrans 22.7 27 0.0011 12.7 5.0 47 73-122 91-138 (318) 381 2rjn_A Response regulator rece 22.6 27 0.0011 12.7 2.8 26 162-187 40-65 (154) 382 3oow_A Phosphoribosylaminoimid 22.6 27 0.0011 12.7 5.8 46 114-163 26-73 (166) 383 1x0u_A Hypothetical methylmalo 22.6 22 0.00091 13.5 0.8 46 456-501 462-507 (522) 384 2f00_A UDP-N-acetylmuramate--L 22.5 27 0.0011 12.7 8.5 12 113-124 36-47 (491) 385 3jyf_A 2',3'-cyclic nucleotide 22.4 27 0.0012 12.7 4.6 44 140-184 42-104 (339) 386 2qzj_A Two-component response 22.3 28 0.0012 12.7 2.3 66 91-170 3-68 (136) 387 1qap_A Quinolinic acid phospho 22.2 17 0.0007 14.4 0.2 13 274-286 153-165 (296) 388 1vdm_A Purine phosphoribosyltr 22.1 28 0.0012 12.6 3.5 98 74-174 7-111 (153) 389 3olq_A Universal stress protei 22.1 28 0.0012 12.6 9.0 98 87-184 2-122 (319) 390 2w3z_A Putative deacetylase; P 22.1 28 0.0012 12.6 4.6 53 92-149 105-160 (311) 391 1wly_A CAAR, 2-haloacrylate re 22.1 28 0.0012 12.6 6.0 20 478-498 301-320 (333) 392 1i6p_A Carbonic anhydrase; met 22.0 28 0.0012 12.6 1.8 13 90-102 32-44 (220) 393 2eih_A Alcohol dehydrogenase; 22.0 28 0.0012 12.6 6.4 19 479-498 313-331 (343) 394 3ctp_A Periplasmic binding pro 21.8 28 0.0012 12.6 7.0 135 30-183 5-145 (330) 395 1oj7_A Hypothetical oxidoreduc 21.8 28 0.0012 12.6 2.9 73 82-160 40-117 (408) 396 1tmy_A CHEY protein, TMY; chem 21.7 28 0.0012 12.6 3.5 15 109-123 15-29 (120) 397 1q77_A Hypothetical protein AQ 21.7 28 0.0012 12.6 5.6 29 155-183 91-119 (138) 398 1ti6_A Pyrogallol hydroxytrans 21.6 28 0.0012 12.6 8.4 104 78-184 114-253 (875) 399 2pbq_A Molybdenum cofactor bio 21.4 29 0.0012 12.5 4.2 46 107-156 25-75 (178) 400 3gd5_A Otcase, ornithine carba 21.3 29 0.0012 12.5 6.3 39 171-211 101-144 (323) 401 1se7_A HOT, homologue of the t 21.3 26 0.0011 12.8 1.1 11 207-217 19-29 (83) 402 2g6z_A Dual specificity protei 21.2 29 0.0012 12.5 6.2 34 72-108 63-96 (211) 403 3dr4_A Putative perosamine syn 21.0 29 0.0012 12.5 8.7 103 74-184 76-182 (391) 404 1wdi_A Hypothetical protein TT 21.0 29 0.0012 12.5 2.6 12 384-395 257-268 (345) 405 2wgp_A Dual specificity protei 21.0 29 0.0012 12.5 4.0 13 167-179 45-57 (190) 406 1xhf_A DYE resistance, aerobic 21.0 29 0.0012 12.5 2.9 16 109-124 16-31 (123) 407 1ym3_A Carbonic anhydrase (car 20.9 29 0.0012 12.5 1.8 18 165-182 94-112 (215) 408 1zym_A Enzyme I; phosphotransf 20.8 29 0.0012 12.5 2.4 36 367-402 153-205 (258) 409 3eod_A Protein HNR; response r 20.8 29 0.0012 12.5 2.3 68 91-172 6-76 (130) 410 2him_A L-asparaginase 1; hydro 20.7 29 0.0012 12.4 5.3 31 152-184 105-140 (358) 411 3lrx_A Putative hydrogenase; a 20.7 29 0.0012 12.4 2.0 28 369-400 114-141 (158) 412 3dah_A Ribose-phosphate pyroph 20.7 29 0.0012 12.4 6.7 73 92-164 54-140 (319) 413 2xdq_A Light-independent proto 20.7 29 0.0012 12.4 5.3 15 11-25 22-36 (460) 414 3l0g_A Nicotinate-nucleotide p 20.6 19 0.00079 14.0 0.2 13 274-286 152-164 (300) 415 1tif_A IF3-N, translation init 20.6 30 0.0012 12.4 3.2 33 161-197 30-62 (78) 416 2hqb_A Transcriptional activat 20.5 30 0.0013 12.4 7.3 87 113-212 30-118 (296) 417 2gt1_A Lipopolysaccharide hept 20.4 30 0.0013 12.4 2.2 14 389-402 266-279 (326) 418 3e58_A Putative beta-phosphogl 20.4 30 0.0013 12.4 9.3 110 74-196 90-205 (214) 419 1r7a_A Sucrose phosphorylase; 20.4 30 0.0013 12.4 2.3 75 90-178 2-82 (504) 420 1qo2_A Molecule: N-((5-phospho 20.3 30 0.0013 12.4 5.2 70 112-183 35-105 (241) 421 2hcu_A 3-isopropylmalate dehyd 20.3 30 0.0013 12.4 2.0 29 150-178 86-117 (213) 422 2w1v_A Nitrilase-2, nitrilase 20.3 30 0.0013 12.4 3.3 25 77-101 20-44 (276) 423 2fvy_A D-galactose-binding per 20.3 30 0.0013 12.4 6.9 77 139-223 49-128 (309) 424 3d1p_A Putative thiosulfate su 20.3 30 0.0013 12.4 4.2 23 152-174 94-116 (139) 425 3ctl_A D-allulose-6-phosphate 20.2 30 0.0013 12.4 3.9 98 75-185 12-119 (231) 426 2jfn_A Glutamate racemase; cel 20.2 30 0.0013 12.4 4.7 79 94-177 23-112 (285) 427 3ic5_A Putative saccharopine d 20.1 30 0.0013 12.3 8.1 70 92-178 5-74 (118) 428 3mmw_A Endoglucanase; TIM barr 20.1 30 0.0013 12.3 1.7 21 164-184 78-98 (317) 429 1vme_A Flavoprotein; TM0755, s 20.0 30 0.0013 12.3 4.3 56 366-428 318-378 (410) No 1 >2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A Probab=100.00 E-value=0 Score=1136.46 Aligned_cols=532 Identities=28% Similarity=0.421 Sum_probs=480.8 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHCCCCHHHCCCCHHHCCCHHHHHHHHHHHHHCCC Q ss_conf 88734115788898899999988199999999999678897898866196677718995561487999999999997799 Q gi|254780901|r 14 SGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSE 93 (600) Q Consensus 14 ~~~rW~~~~~~~~~~~~~~l~~~~~~~~~~a~iL~~Rgi~~~~~~~fL~p~l~~l~~dP~~l~dm~~A~~ri~~ai~~~e 93 (600) +..||+..+. +..+.+..+++++|+|+++|++|++|||+.. ++|+|.+ +|+.|+||++||+||.+||+++| T Consensus 3 ~~~rW~~~~~-~~~~~~~~l~~~~~i~~~~a~~L~~Rgi~~~---e~l~p~l-----~~~~l~dm~~Av~ri~~Ai~~~e 73 (666) T 2zxr_A 3 DRVRWRVLSL-PPLAQWREVMAALEVGPEAALAYWHRGFRRK---EDLDPPL-----ALLPLKGLREAAALLEEALRQGK 73 (666) T ss_dssp TTEEEEECCC-CCHHHHHHHHHHHTCCHHHHHHHHHTTCCSG---GGTSCCC-----CCCCCTTHHHHHHHHHHHHHTTC T ss_pred CCCEEEECCC-CCHHHHHHHHHHCCCCHHHHHHHHHCCCCCH---HHHCCCC-----CCCCCCCHHHHHHHHHHHHHCCC T ss_conf 7863656699-9889999999981979999999996799997---8959554-----43774489999999999997699 Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCC Q ss_conf 79999407886152899999999976994799807874336688978988742026868999648876234555554179 Q gi|254780901|r 94 KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQG 173 (600) Q Consensus 94 kI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~G 173 (600) ||+|||||||||+||||||+++|+.+|++|.||||||++||||+|.+.++++++ |++|||||||||+++++|++|+++| T Consensus 74 kI~I~GDYDvDGiTStaIL~~~L~~lg~~v~~yIP~R~~eGYGl~~~~i~~~~e-g~~LiITvDcGi~a~e~i~~a~~~G 152 (666) T 2zxr_A 74 RIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHLE-ASDLFLTVDCGITNHAELRELLENG 152 (666) T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHHTTCEEEECCC---------------------CCEEEESCCC-------------- T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHH-CCCEEEEECCCCCCHHHHHHHHHCC T ss_conf 899997468416899999999999889965998889765688869999999860-8998999648823399999888679 Q ss_pred CCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 82799615447655567256523788886433443047889999999999970214887640779999999877542011 Q gi|254780901|r 174 IDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDV 253 (600) Q Consensus 174 idvIVtDHH~~~~~~p~a~aivNP~~~~~~~p~~~l~gaGvaf~l~~al~~~l~~~~~~~~~~~l~~~ldlvaiGTvaD~ 253 (600) |||||||||+| ++.|++.++|||++.++ ++++||||||||||++++.+.++.. ++.+||||||||||||| T Consensus 153 idvIVtDHH~p-~~~p~~~~iinp~~~~~--~~~~L~GaGVafkl~~~l~~~~~~~-------~~~~~ldLvalgTIADv 222 (666) T 2zxr_A 153 VEVIVTDHHTP-GKTPPPGLVVHPALTPD--LKEKPTGAGVAFLLLWALHERLGLP-------PPLEYADLAAVGTIADV 222 (666) T ss_dssp CEEEEECCCC---------CEECGGGSTT--CCCCCCHHHHHHHHHHHHHHHTTCC-------CCGGGHHHHHHHHHHTT T ss_pred CEEEEECCCCC-CCCCCCCEEECCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCC T ss_conf 98999498999-87788757975676676--5333404589999999975511220-------18999889866651032 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCEEEECCCHHHHHHHH Q ss_conf 11444118999987887751688743578987088864242345666774306233312122221002034258999999 Q gi|254780901|r 254 VPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLA 333 (600) Q Consensus 254 vpL~~eNR~lvk~GL~~l~~~~~~gl~~L~~~~~~~~~i~~~di~f~iaPrINAaGRl~~a~~av~lL~~~d~~~a~~la 333 (600) |||.+|||+||++||+.+++++|+|+++|++.++.+ +++.||||.|||||||+|||++|+.+++||+++|+.+|..+| T Consensus 223 vpL~~eNR~lVk~GL~~l~~~~~~gl~~L~~~~~~~--~~~~dIgF~IaPrINAaGRl~~a~~av~LLls~d~~~a~~la 300 (666) T 2zxr_A 223 APLWGWNRALVKEGLARIPASSWVGLRLLAEAVGYT--GKAVEVAFRIAPRINAASRLGEAEKALRLLLTDDAAEAQALV 300 (666) T ss_dssp CCCSHHHHHHHHHHHHHGGGCSSHHHHHHHHHTTCC--SCHHHHHHTHHHHHHHHHHTTCHHHHHHHHHCCCHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHH T ss_conf 364267899998746654224540478874322127--867786777765533545444244544555137889999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEEEE Q ss_conf 99998999999999999999999987521124347502620578581222222789988420107998863798379998 Q gi|254780901|r 334 MKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSG 413 (600) Q Consensus 334 ~~L~~lN~~Rk~~e~~i~~~a~~~~~~~~~~~~~~~~ivv~~~~wh~GViGIVAsrL~e~y~kP~iv~s~~~dg~~kGS~ 413 (600) .+|+++|++||++|+++++++.++. .++.++||+++++||+||+|||||||+|+|+|||||++. .|||+ T Consensus 301 ~~L~~lN~~Rk~ie~~i~~ea~~~~------~~~~~~ivl~~~~wh~GViGIVAsRL~e~y~rP~iVls~-----~kGS~ 369 (666) T 2zxr_A 301 GELHRLNARRQTLEEAMLRKLLPQA------DPEAKAIVLLDPEGHPGVMGIVASRILEATLRPVFLVAQ-----GKGTV 369 (666) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSS------CTTCSSEEEECTTCCHHHHHHHHHHHHHHHCSCEEEEET-----TEEEE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEC-----CEEEE T ss_conf 9998889999999999999987654------135637999878776116889999999863897899976-----63888 Q ss_pred ECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCHHHCCCCEEEEEEECHHHCCHHHH Q ss_conf 64898618888885303353011565322231464222158899999999986226443377147604434689799999 Q gi|254780901|r 414 RSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALI 493 (600) Q Consensus 414 RSi~g~~l~~~l~~~~~~~ll~~~GGH~~AaG~ti~~~~l~~f~~~l~~~~~~~~~~~~~~~~l~iD~el~~~~i~~~l~ 493 (600) ||++|||++++|..|++ +|.+||||+||||||++++++++|++++++++.+... ..+.+.+|.++++++++.+++ T Consensus 370 RSi~g~~l~~aL~~~~~--lL~~fGGH~~AAG~sl~~~~l~~F~~~l~~~~~~~~~---~~~~~~~dd~l~~~~i~~~l~ 444 (666) T 2zxr_A 370 RSLAPISAVEALRSAED--LLLRYGGHKEAAGFAMDEALFPAFKARVEAYAARFPD---PVREVALLDLLPEPGLLPQVF 444 (666) T ss_dssp ECCTTCCHHHHHHHTGG--GCSEEEECSSEEEEECCGGGHHHHHHHHHHHHHTSCC---CCEEEEECEECCCGGGHHHHH T ss_pred ECCCCCCHHHHHHHHHH--HHHHCCCHHHCCCCEECHHHHHHHHHHHHHHHHHCCC---CCCCHHEEEECCCCCCHHHHH T ss_conf 78887683889976655--6652796331672367652159999999999985430---012200110037030229999 Q ss_pred HHHHHCCCCCCCCCCCEEEECCEEEEEEEEECC-CEEEEEEECCCCCEEEEEEECCCCCCHHHHHHCCCCCEEEEEEEEE Q ss_conf 999851846789998468427809988888479-6499999849987799999778787012355306998799999976 Q gi|254780901|r 494 DMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNL-AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLC 572 (600) Q Consensus 494 ~~L~~lePFG~gNpeP~F~~~~~~i~~~r~vGk-~Hlkl~l~~~~g~~i~aI~Fn~~~~~~~~~~~~~~g~~idii~~l~ 572 (600) ++|++|+|||+|||+|+|+++++.+ +.+.+|+ +|+||.++ .+++||||+.+. ..+..+|++|+|+ T Consensus 445 ~~L~~LePFG~gNp~P~F~~~~~~~-~~~~vg~gkHlkl~l~-----~~~aI~F~~~~~--------~~~~~vdi~~~l~ 510 (666) T 2zxr_A 445 RELALLEPYGEGNPEPLFLLFGAPE-EARRLGEGRHLAFRLK-----GVRVLAWKQGDL--------ALPPEVEVAGLLS 510 (666) T ss_dssp HHHGGGCSCSSSSCCCCEEEEECCE-EEEESSSSSEEEEEET-----TEEEEEECCSSC--------SCCSSEEEEEEEE T ss_pred HHHHHCCCCCCCCCCCEEEECCCEE-EEEEECCCCEEEEEEE-----CCCEEEECCCCC--------CCCCEEEEEEEEE T ss_conf 9999639888999986798338589-9878627847999995-----788899889765--------7798799999974 Q ss_pred EEEECCCCEEEEEEEEEEECCCCCC Q ss_conf 6545781105899998011131126 Q gi|254780901|r 573 VNYWRGSKRCQLRVLDASPVEGHHF 597 (600) Q Consensus 573 ~N~~~G~~s~QL~I~Di~p~e~~~~ 597 (600) +|+|+|++++||+|+|||+.++... T Consensus 511 ~N~w~G~~~~QL~I~Dir~~~~~~~ 535 (666) T 2zxr_A 511 ENAWNGHLAYEVQAVDLRKPEALEG 535 (666) T ss_dssp EEEETTEEEEEEEEEEEESCCCCBC T ss_pred EEEECCEEEEEEEEEEECCCCCCCC T ss_conf 7877997559999998067654002 No 2 >3dev_A SH1221; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.10A {Staphylococcus haemolyticus JCSC1435} Probab=99.89 E-value=2.5e-21 Score=185.05 Aligned_cols=301 Identities=15% Similarity=0.163 Sum_probs=164.7 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECC--CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHH--HHHHHHHCCCCEE Q ss_conf 799999999999779979999407--886152899999999976994799807874336688978--9887420268689 Q gi|254780901|r 78 CDKAARRIVQAIYNSEKIMIFGDY--DVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS--LMEKFINEGAQLI 153 (600) Q Consensus 78 m~~A~~ri~~ai~~~ekI~I~gDy--D~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~--~i~~~~~~g~~Li 153 (600) |.+..++|.+.|++.++|+|+|+. |.||+.|+..|..+|+.+|.++.+++|.++.++|+.-.. .+.+... ..+++ T Consensus 1 m~~~~~~i~~~i~~~~~i~I~~H~~pD~D~igSa~al~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~-~~~~v 79 (320) T 3dev_A 1 MVEIFNEIMQRVKEAETIIIHRHVRPDPDAYGSQLGLKLYLERKFPEKNIYATGEAEPSLSFIGDLDEIDDSVY-SDALV 79 (320) T ss_dssp CCCHHHHHHHHHHTCSEEEEECBSSCCHHHHHHHHHHHHHHHHHCTTSEEEECCCCCGGGTTTCCCCCCCSSTT-TTCEE T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHCCCHHHHCCCCC-CCCEE T ss_conf 96899999999965995999968998578999999999999960998599988999757775478153020025-76469 Q ss_pred EEECCCCCCHHHHHH-HHHCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 996488762345555-5417982799615447655567256523788886433443047889999999999970214887 Q gi|254780901|r 154 ITVDCGSTSYDALQY-ATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKV 232 (600) Q Consensus 154 ItvD~Gi~~~e~i~~-a~~~GidvIVtDHH~~~~~~p~a~aivNP~~~~~~~p~~~l~gaGvaf~l~~al~~~l~~~~~~ 232 (600) |+|||+..+ .+.. ....+..+||+|||..++. +....+|+|+. -|.+.+.|.++.. ++....+ T Consensus 80 IivD~~~~~--~i~~~~~~~~~~vivIDHH~s~~~-~~~~~~id~~~---------~st~~lv~~~~~~----~~~~~~i 143 (320) T 3dev_A 80 IVCDTANAP--RIDDQRYLNGQSLIKIDHHPATDQ-YGDVNFVNTEA---------SSTSEIIFDFISH----FNDLSII 143 (320) T ss_dssp EEESCSSGG--GBSSGGGGSSSCEEEEECSCSSCC-CSSEEEECTTS---------SCHHHHHHHHHHT----TTCTTTC T ss_pred EEECCCCCC--CCCCHHHHCCCCEEEEEECCCCCC-CCCEEEEECCC---------CHHHHHHHHHHHH----HCCCCCC T ss_conf 993589745--465244523784599985258776-76357872450---------0399999999997----4035799 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHC Q ss_conf 64077999999987754201111444118999987887751688743578987088864242345666774306233312 Q gi|254780901|r 233 PLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYMIGPSINAGGRIG 312 (600) Q Consensus 233 ~~~~~l~~~ldlvaiGTvaD~vpL~~eNR~lvk~GL~~l~~~~~~gl~~L~~~~~~~~~i~~~di~f~iaPrINAaGRl~ 312 (600) ......+ ...|.+.|.--+.. ...++. .|.++..|.+.|- T Consensus 144 --~~~~a~~---l~~gi~~Dt~~~~~-------------------------------~~~~~~--~~~~~~~L~~~g~-- 183 (320) T 3dev_A 144 --DEHVARV---LYLGIVGDTGRFLF-------------------------------SNTSPH--TMEVASQLLAYPF-- 183 (320) T ss_dssp --CHHHHHH---HHHHHHHHTTTTTS-------------------------------TTCCHH--HHHHHHHHHHSSS-- T ss_pred --CHHHHHH---HHHHHHHHHCCEEC-------------------------------CCCCHH--HHHHHHHHHHCCC-- T ss_conf --9999999---99999666163324-------------------------------899876--9999999987399-- Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE--EE-----CCCCCHHHHHH Q ss_conf 122221002034258999999999989999999999999999999875211243475026--20-----57858122222 Q gi|254780901|r 313 ESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIV--VE-----GDRWHPGIVGL 385 (600) Q Consensus 313 ~a~~av~lL~~~d~~~a~~la~~L~~lN~~Rk~~e~~i~~~a~~~~~~~~~~~~~~~~iv--v~-----~~~wh~GViGI 385 (600) +.... ...+.+...++..+ ...+...+ .......+.. +. .-+..++-+.- T Consensus 184 ~~~~~---------------~~~l~~~~~~~~~~----~~~~l~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 240 (320) T 3dev_A 184 NHNAE---------------LNKMSEKDPKLMPF----QGYVLQNF----ELSDSHEYCQIKITNDVLKQFDIQPNEASQ 240 (320) T ss_dssp CHHHH---------------HHHHHCBCGGGHHH----HHHHHHSC----CBCTTSSEEEEEECHHHHHHTTCCHHHHTT T ss_pred CHHHH---------------HHHHHHHHHHHHHH----HHHHHHCC----CEECCCCEEEEECCHHHHHHCCCCCHHHHH T ss_conf 55999---------------99998757899999----99996100----032588689996258889872897236789 Q ss_pred HHHHHHHHHHCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEC-CCCHHHHHHHHHHHH Q ss_conf 2789988420107998863798379998648986188888853033530115653222314642-221588999999999 Q gi|254780901|r 386 LAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVE-RVNFGRLCDFFQKFA 464 (600) Q Consensus 386 VAsrL~e~y~kP~iv~s~~~dg~~kGS~RSi~g~~l~~~l~~~~~~~ll~~~GGH~~AaG~ti~-~~~l~~f~~~l~~~~ 464 (600) +++.+...-+.++.++-...++..++|+|| .|+|+.++... | .+|||++|||++|+ .+.++++.+.+.+.. T Consensus 241 iv~~l~~i~g~~v~~~~~~~~~~v~~S~RS-~~~dv~~ia~~------~-gGGGH~~AAG~~i~~~~~~~~~~~~l~~~l 312 (320) T 3dev_A 241 FVNTVADISGLKIWMFGVDEGDQIRCRIRS-KGITINDVANQ------F-GGGGHPNASGVSVYSWDEFEELAQALRQKL 312 (320) T ss_dssp CGGGSTTBTTCCEEEEEEECSSSEEEEEEE-SSSCCHHHHHH------T-TCEEETTEEEEEESSHHHHHHHHHHHHHHT T ss_pred HHHHHCCCCCEEEEEEEEEECCEEEEEEEC-CCCCHHHHHHH------H-CCCCCHHHCEEEECCCCHHHHHHHHHHHHH T ss_conf 998855847659999999989999999978-99799999988------1-996556624888488433999999999998 Q ss_pred HH Q ss_conf 86 Q gi|254780901|r 465 HN 466 (600) Q Consensus 465 ~~ 466 (600) .+ T Consensus 313 ~e 314 (320) T 3dev_A 313 LE 314 (320) T ss_dssp TS T ss_pred HH T ss_conf 76 No 3 >3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis} Probab=99.77 E-value=7.5e-16 Score=142.25 Aligned_cols=306 Identities=15% Similarity=0.104 Sum_probs=163.5 Q ss_pred HHHH-HHHHHHHHHCCCCEEEEECC--CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCH------------HHH Q ss_conf 7999-99999999779979999407--88615289999999997699479980787433668897------------898 Q gi|254780901|r 78 CDKA-ARRIVQAIYNSEKIMIFGDY--DVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP------------SLM 142 (600) Q Consensus 78 m~~A-~~ri~~ai~~~ekI~I~gDy--D~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~------------~~i 142 (600) |.++ .+++.+.|++.++|+|+|+- |.|++.|+.-|+.+|+.+|.++.+++|+.+.+.+..-+ ... T Consensus 6 ~~~~~~~~~~~~i~~~~~i~I~~H~npD~DalgSa~al~~~l~~~gk~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (343) T 3dma_A 6 IAQAHIDHFTKWFERADKIVIVSHVSPDGDAIGSSLGLYHFLDSQDKIVNVIVPNAFPDFLKWMPGSKDILLYDRYQEFA 85 (343) T ss_dssp SCHHHHHHHHHHHHHCSEEEEEECSSCCHHHHHHHHHHHHHHHHTSCEEEEEESSCCCGGGTTSTTGGGCEETTTCHHHH T ss_pred HHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCHHHHHHCCCCHHH T ss_conf 99999999999996099699982899981899999999999998599489996999807887545741233310232110 Q ss_pred HHHHHCCCCEEEEECCCCCCH--HHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 874202686899964887623--455555417982799615447655567256523788886433443047889999999 Q gi|254780901|r 143 EKFINEGAQLIITVDCGSTSY--DALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLV 220 (600) Q Consensus 143 ~~~~~~g~~LiItvD~Gi~~~--e~i~~a~~~GidvIVtDHH~~~~~~p~a~aivNP~~~~~~~p~~~l~gaGvaf~l~~ 220 (600) +... ...+++|.|||+.... +........+..++|.|||..+... ....+++|.. -|.+-+.|.++. T Consensus 86 ~~~~-~~~d~viivD~~~~~~~~~~~~~~~~~~~~~iviDHH~~~~~~-~~~~~v~~~~---------~st~elv~~~~~ 154 (343) T 3dma_A 86 DKLI-MEADVICCLDFNALKRIDEMSDIVAASPGRKIMIDHHLYPEDF-CRITISHPEI---------SSTSELVFRLIC 154 (343) T ss_dssp HHHH-HHCSEEEEESCSSGGGGTTCHHHHHHCCSEEEEEECCSSCCSC-SSEEEECTTS---------SCHHHHHHHHHH T ss_pred HHHC-CCCCEEEEECCCCCHHCCHHHHHHHHCCCEEEEECCCCCCCCC-CEEEEEECCC---------CCHHHHHHHHHH T ss_conf 3333-5454799951687101001566776048708995489987777-6068995584---------639999999999 Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHH Q ss_conf 99997021488764077999999987754201111444118999987887751688743578987088864242345666 Q gi|254780901|r 221 LIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM 300 (600) Q Consensus 221 al~~~l~~~~~~~~~~~l~~~ldlvaiGTvaD~vpL~~eNR~lvk~GL~~l~~~~~~gl~~L~~~~~~~~~i~~~di~f~ 300 (600) .+ +....+ ...... +...|.+.|--.+.-.| -+.. .|. T Consensus 155 ~~----~~~~~i--~~~~At---~L~~GI~~DTg~f~~~~-------------------------------tt~~--~~~ 192 (343) T 3dma_A 155 RM----GYFSDI--SKEGAE---CIYTGMMTDTGGFTYNS-------------------------------NNRE--IYF 192 (343) T ss_dssp HT----TCGGGC--CHHHHH---HHHHHHHHHTTTTTSSC-------------------------------CCHH--HHH T ss_pred HH----CCCCCC--CHHHHH---HHHEEEEEECCCEEECC-------------------------------CCHH--HHH T ss_conf 71----766788--999997---40300686058544378-------------------------------9878--999 Q ss_pred HHHHCCHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC-CCC- Q ss_conf 774306233312122221002034258999999999989999999999999999999875211243475026205-785- Q gi|254780901|r 301 IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEG-DRW- 378 (600) Q Consensus 301 iaPrINAaGRl~~a~~av~lL~~~d~~~a~~la~~L~~lN~~Rk~~e~~i~~~a~~~~~~~~~~~~~~~~ivv~~-~~w- 378 (600) ++-.+=..| -+..+ +.+.+.. ....-+..++.++.+.+. -.....+.+... ..+ T Consensus 193 ~a~~L~~~g--------------~~~~~---i~~~l~~---~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~ 248 (343) T 3dma_A 193 IISELLSKG--------------IDKDD---IYRKVYN---TYSESRLRLMGYVLSNMK----VYKDYNSALISLTKEEQ 248 (343) T ss_dssp HHHHHHTTT--------------CCHHH---HHHHHHS---CCCHHHHHHHHHHHHTCE----EETTTTEEEEEECHHHH T ss_pred HHHHHHHCC--------------CCHHH---HHHHHHH---CCCHHHHHHHHHHHHHCE----EECCCCEEEEECCHHHH T ss_conf 999999869--------------99899---9999883---286999999999984217----70387567763039889 Q ss_pred -----CHHHHHHHHHHHHHHHHCEE-EEEEE-CCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEECCC Q ss_conf -----81222222789988420107-99886-379837999864898618888885303353011565322231464222 Q gi|254780901|r 379 -----HPGIVGLLAARLKEKFGRPS-FAISF-EEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERV 451 (600) Q Consensus 379 -----h~GViGIVAsrL~e~y~kP~-iv~s~-~~dg~~kGS~RSi~g~~l~~~l~~~~~~~ll~~~GGH~~AaG~ti~~~ 451 (600) ...-.--+++.+....+..+ +++.. .+++..++|+||.+.+|+.+++.+. | .+|||+.|||++++ . T Consensus 249 ~~~~~~~~~~~~~v~~l~~i~gv~~a~~~~~~~~~~~~~vS~RS~~~~dv~~ia~~~-----~-gGGGH~~AAG~~i~-~ 321 (343) T 3dma_A 249 GKFDYIKGDSEGFVNIPLSIKNVCFSCFLREDTEKKMIKISLRSVGKFPCNRLAAEF-----F-NGGGHLNASGGEFY-G 321 (343) T ss_dssp HHTTCCTTTTTTGGGGGGGSTTCCEEEEEEECCCC--EEEEEEESSSCCHHHHHHHH-----T-SCEECSSEEEEEEC-S T ss_pred HHCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEECCCCCHHHHHHHH-----C-CCCCCHHHCEEEEC-C T ss_conf 763984267799999874346837999999984898799998879988899999987-----5-99562755105647-9 Q ss_pred CHHHHHHHHHHHHHHH Q ss_conf 1588999999999862 Q gi|254780901|r 452 NFGRLCDFFQKFAHNI 467 (600) Q Consensus 452 ~l~~f~~~l~~~~~~~ 467 (600) .++++.+.+.+.+.+. T Consensus 322 ~~~e~~~~~~~~i~~~ 337 (343) T 3dma_A 322 TMEEAVKVFEQALEKY 337 (343) T ss_dssp CHHHHHHHHHHHHHHS T ss_pred CHHHHHHHHHHHHHHH T ss_conf 9999999999999999 No 4 >1wpn_A Manganese-dependent inorganic pyrophosphatase; metal binding, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.107.1.1 Probab=97.80 E-value=0.0001 Score=55.19 Aligned_cols=147 Identities=18% Similarity=0.172 Sum_probs=80.0 Q ss_pred CCEEEEECC--CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC-------CCCCCHHHHHHHHHCCCCEEEEECCCCCCH Q ss_conf 979999407--88615289999999997699479980787433-------668897898874202686899964887623 Q gi|254780901|r 93 EKIMIFGDY--DVDGAASVALMMRFLSHCSVNANMYIPDRIVD-------GYGPNPSLMEKFINEGAQLIITVDCGSTSY 163 (600) Q Consensus 93 ekI~I~gDy--D~DGitstail~~~L~~~g~~v~~~IP~R~~e-------GYGl~~~~i~~~~~~g~~LiItvD~Gi~~~ 163 (600) +||+|+|+- |.|++.|+.-|+.+|+..|.++..+.+..... .++................++.|||... T Consensus 2 ~~i~V~~H~~pD~DaigSalal~~~l~~~~~~~~i~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-- 79 (188) T 1wpn_A 2 EKILIFGHQNPDTDTICSAIAYADLKNKLGFNAEPVRLGQVNGETQYALDYFKQESPRLVETAANEVNGVILVDHNER-- 79 (188) T ss_dssp CCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEESSCCCHHHHHHHHHTTCCCCEECSCSTTTCSEEEEESCCCG-- T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCCCHHHCCCCCCCEEEECCCCCH-- T ss_conf 839994699986599999999999999829987999789999789999876577652000002332220220157886-- Q ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH Q ss_conf 45555541798279961544765556725652378888643344304788999999999997021488764077999999 Q gi|254780901|r 164 DALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLLD 243 (600) Q Consensus 164 e~i~~a~~~GidvIVtDHH~~~~~~p~a~aivNP~~~~~~~p~~~l~gaGvaf~l~~al~~~l~~~~~~~~~~~l~~~ld 243 (600) ..........-.|+|+|||..++........+... ..=|.+-+.+.+.+. . ..+...++. . T Consensus 80 ~~~~~~~~~~~~v~iIDHH~~~~~~~~~~~~~~~~--------~~~st~~iv~~l~~~----~----~~~i~~~~A---~ 140 (188) T 1wpn_A 80 QQSIKDIEEVQVLEVIDHHRIANFETAEPLYYRAE--------PVGCTATILNKMYKE----N----NVKIEKEIA---G 140 (188) T ss_dssp GGSCTTGGGSEEEEEEECSCCCSCCCSSCCEEEEC--------SSSCHHHHHHHHHHH----T----TCCCCHHHH---H T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEECC--------CCCCHHHHHHHHHHH----H----CCCCCHHHH---H T ss_conf 56167786178679983577766777774178357--------635599999999999----7----899899999---9 Q ss_pred HHHHHHHHCCCCCCCCC Q ss_conf 98775420111144411 Q gi|254780901|r 244 LVALATVCDVVPLIGLN 260 (600) Q Consensus 244 lvaiGTvaD~vpL~~eN 260 (600) +...|.+.|-.-+...| T Consensus 141 ~L~~GI~~DTg~F~~~~ 157 (188) T 1wpn_A 141 LMLSAIISDSLLFKSPT 157 (188) T ss_dssp HHHHHHHHHHTTTTSTT T ss_pred HHHHHHHHHHCCCCCCC T ss_conf 98869998706567899 No 5 >2haw_A Manganese-dependent inorganic pyrophosphatase; substrate complex, hydrolase; HET: 1PE PG4; 1.75A {Bacillus subtilis} SCOP: c.107.1.1 PDB: 1k23_A* 1wpm_A* 2iw4_A* Probab=97.69 E-value=0.00023 Score=52.42 Aligned_cols=140 Identities=20% Similarity=0.217 Sum_probs=75.3 Q ss_pred CCEEEEEC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHH---HHHH----------HHCCCCEEEEEC Q ss_conf 97999940--78861528999999999769947998078743366889789---8874----------202686899964 Q gi|254780901|r 93 EKIMIFGD--YDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL---MEKF----------INEGAQLIITVD 157 (600) Q Consensus 93 ekI~I~gD--yD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~---i~~~----------~~~g~~LiItvD 157 (600) ++|.|+|+ -|.|.+.|+.-++.+|+.+|.+...+.+.. ++.+. ++.+ .....+.+|.|| T Consensus 2 ~kI~V~gH~~pD~DsigSaiala~~l~~~g~~~~~~~~~~------~~~e~~~~l~~~~~~~~~l~~~~~~~~~~vilVD 75 (309) T 2haw_A 2 EKILIFGHQNPDTDTICSAIAYADLKNKLGFNAEPVRLGQ------VNGETQYALDYFKQESPRLVETAANEVNGVILVD 75 (309) T ss_dssp CCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEESSC------CCHHHHHHHHHTTCCCCEECSCSTTTCSEEEEES T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC------CCHHHHHHHHHCCCCCCHHHHHCCCCCCEEEECC T ss_conf 9889960999638999999999999998099869997899------9978999998769854045553146554588626 Q ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCC-CEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHH Q ss_conf 887623455555417982799615447655567-2565237888864334430478899999999999702148876407 Q gi|254780901|r 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP-AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNF 236 (600) Q Consensus 158 ~Gi~~~e~i~~a~~~GidvIVtDHH~~~~~~p~-a~aivNP~~~~~~~p~~~l~gaGvaf~l~~al~~~l~~~~~~~~~~ 236 (600) ++.... ..+.+.+.. -++|+|||..++.... ...++++. .-|.|-+.|.+.+ ..+ ..... T Consensus 76 ~n~~~~-~~~~~~~a~-v~~iIDHH~~~~~~~~~~~~~~~~~---------~gSt~tiv~~~~~----~~~----~~i~~ 136 (309) T 2haw_A 76 HNERQQ-SIKDIEEVQ-VLEVIDHHRIANFETAEPLYYRAEP---------VGCTATILNKMYK----ENN----VKIEK 136 (309) T ss_dssp CCCGGG-SCTTGGGSE-EEEEEECSCCCSCCCSSCCEEEECC---------SSCHHHHHHHHHH----HTT----CCCCH T ss_pred CCCHHH-HHHHHHHCC-EEEEEECCCCCCCCCCCCCEEEECC---------CCCHHHHHHHHHH----HCC----CCCCH T ss_conf 898466-356686577-0699855777787766753575178---------6858999999999----739----99999 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 799999998775420111144411 Q gi|254780901|r 237 DLLSLLDLVALATVCDVVPLIGLN 260 (600) Q Consensus 237 ~l~~~ldlvaiGTvaD~vpL~~eN 260 (600) ++.. +...|.+.|-+-+...| T Consensus 137 ~~A~---lLl~gIl~DT~~F~~~~ 157 (309) T 2haw_A 137 EIAG---LMLSAIISDSLLFKSPT 157 (309) T ss_dssp HHHH---HHHHHHHHHHTTTTSTT T ss_pred HHHH---HHHHHHHHHCCCCCCCC T ss_conf 9999---99989987406347689 No 6 >1k20_A Manganese-dependent inorganic pyrophosphatase; family II ppase, binuclear metal centre, hydrolase; 1.50A {Streptococcus gordonii} SCOP: c.107.1.1 PDB: 1wpp_A 2enx_A* 1i74_A Probab=96.57 E-value=0.011 Score=39.14 Aligned_cols=144 Identities=18% Similarity=0.200 Sum_probs=69.0 Q ss_pred CEEEEECC--CCCHHHHHHHHHHHHH-HCCCCEEEEECCCCC-------CCCCCCHH-HHHHHHHCCCCEEEEECCCCCC Q ss_conf 79999407--8861528999999999-769947998078743-------36688978-9887420268689996488762 Q gi|254780901|r 94 KIMIFGDY--DVDGAASVALMMRFLS-HCSVNANMYIPDRIV-------DGYGPNPS-LMEKFINEGAQLIITVDCGSTS 162 (600) Q Consensus 94 kI~I~gDy--D~DGitstail~~~L~-~~g~~v~~~IP~R~~-------eGYGl~~~-~i~~~~~~g~~LiItvD~Gi~~ 162 (600) ||.|+|+- |.|.+.|+.-+..+++ ..|.++..+...... +..|+... .+......+.+.+|.||+...+ T Consensus 2 kIlV~GH~npD~DsigSaiala~ll~~~~g~~~~~~~~~~~~~e~~~~l~~~~i~~~~li~~~~~~~~~~vilVD~n~~~ 81 (310) T 1k20_A 2 KILVFGHQNPDSDAIGSSYAFAYLAREAYGLDTEAVALGEPNEETAFVLDYFGVAAPRVITSAKAEGAEQVILTDHNEFQ 81 (310) T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHHHHHCCCEEECBSSCCCHHHHHHHHHHTCCCCCBCSCTGGGTCSEEEEESCCCGG T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCHH T ss_conf 49998699973799999999999999847997599978999969999886669972466543321156505976687232 Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCC-CEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH Q ss_conf 3455555417982799615447655567-256523788886433443047889999999999970214887640779999 Q gi|254780901|r 163 YDALQYATNQGIDVIVIDHHQVKSEEIP-AYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSL 241 (600) Q Consensus 163 ~e~i~~a~~~GidvIVtDHH~~~~~~p~-a~aivNP~~~~~~~p~~~l~gaGvaf~l~~al~~~l~~~~~~~~~~~l~~~ 241 (600) .- .....+ .--+.|+|||...+.... ...+++|. + -|.+-+.|.+. +..+ ... ..++.. T Consensus 82 q~-~~~~~~-~~v~~iIDHH~~~~~~~~~~~~~~~~~-----~----gSt~tiv~~~~----~~~~--~~i--~~~~A~- 141 (310) T 1k20_A 82 QS-VADIAE-VEVYGVVDHHRVANFETANPLYMRLEP-----V----GSASSIVYRMF----KEHS--VAV--SKEIAG- 141 (310) T ss_dssp GS-CTTGGG-SEEEEEEECSCCCSCCCSSCCEEEECS-----S----SCHHHHHHHHH----HHTT--CCC--CHHHHH- T ss_pred HC-HHHHHH-CCEEEEEECCCCCCCCCCCEEEEECCC-----C----CCHHHHHHHHH----HHCC--CCC--CHHHHH- T ss_conf 15-457844-745899950236787655605886267-----6----83899999999----9718--999--999999- Q ss_pred HHHHHHHHHHCCCCCCCC Q ss_conf 999877542011114441 Q gi|254780901|r 242 LDLVALATVCDVVPLIGL 259 (600) Q Consensus 242 ldlvaiGTvaD~vpL~~e 259 (600) +...|.+.|-+-+... T Consensus 142 --lLl~gIl~DT~~F~~~ 157 (310) T 1k20_A 142 --LMLSGLISDTLLLKSP 157 (310) T ss_dssp --HHHHHHHHHHTTTTST T ss_pred --HHHHHHHHHCCCCCCC T ss_conf --9999999977577999 No 7 >2eb0_A Manganese-dependent inorganic pyrophosphatase; DHH domain, DHHA2 domain, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} Probab=95.93 E-value=0.051 Score=34.02 Aligned_cols=139 Identities=25% Similarity=0.252 Sum_probs=61.8 Q ss_pred EEEEC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHH---HHHH--------HHCCCCEEEEECCCCCC Q ss_conf 99940--78861528999999999769947998078743366889789---8874--------20268689996488762 Q gi|254780901|r 96 MIFGD--YDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL---MEKF--------INEGAQLIITVDCGSTS 162 (600) Q Consensus 96 ~I~gD--yD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~---i~~~--------~~~g~~LiItvD~Gi~~ 162 (600) .|+|+ -|.|.+.|+..+..+|...+ .+..+ ++++. ++.. .....+.+|.||+...+ T Consensus 3 ~V~GH~~pD~Dsi~Saiala~~l~~~~--------~~~~~---l~~e~~~~l~~~~i~~~~l~~~~~~~~vilVD~n~~~ 71 (307) T 2eb0_A 3 YVVGHKNPDTDSIASAIVLAYFLDCYP--------ARLGD---INPETEFVLRKFGVMEPELIESAKGKEIILVDHSEKS 71 (307) T ss_dssp EEECCSSCCHHHHHHHHHHHHHHTSEE--------EESSC---CCHHHHHHHHHHTCCCCEECCCCTTCEEEEESCCCGG T ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCC--------CCCCC---CCHHHHHHHHHCCCCCHHHCCCCCCCEEEEECCCCHH T ss_conf 991699962589999999999986389--------22586---8868999998769984565135688889997599522 Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH Q ss_conf 34555554179827996154476555672565237888864334430478899999999999702148876407799999 Q gi|254780901|r 163 YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLSLL 242 (600) Q Consensus 163 ~e~i~~a~~~GidvIVtDHH~~~~~~p~a~aivNP~~~~~~~p~~~l~gaGvaf~l~~al~~~l~~~~~~~~~~~l~~~l 242 (600) .- .... ...--+.|+|||......+....++.+. .-|.+.+.+.++....-............++.. T Consensus 72 ~~-~~~~-~~~~vv~iIDHH~~~~~~~~~~~~~~~~---------~gSt~tlV~~~~~~~~i~~~~~~~~~i~~~~A~-- 138 (307) T 2eb0_A 72 QS-FDDL-EEGKLIAIIDHHKVGLTTTEPILYYAKP---------VGSTATVIAELYFKDAIDLIGGKKKELKPDLAG-- 138 (307) T ss_dssp GS-CTTG-GGSEEEEEEESSCCCCCCSSCCEEEECS---------SSCHHHHHHHHHHTTCGGGGTCCCCCCCHHHHH-- T ss_pred HC-HHHH-HHCCEEEEECCCCCCCCCCCCEEEEECC---------CCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH-- T ss_conf 03-2357-5576589981677788875631898278---------575899999999980843023434568999999-- Q ss_pred HHHHHHHHHCCCCCCCC Q ss_conf 99877542011114441 Q gi|254780901|r 243 DLVALATVCDVVPLIGL 259 (600) Q Consensus 243 dlvaiGTvaD~vpL~~e 259 (600) +...|.+.|-+-+... T Consensus 139 -lLl~~Il~DT~~f~~~ 154 (307) T 2eb0_A 139 -LLLSAIISDTVLFKSP 154 (307) T ss_dssp -HHHHHHHHHHTTTTST T ss_pred -HHHHHHHHHHCCCCCC T ss_conf -9853396772737889 No 8 >3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} PDB: 2pqa_A 1quq_A 1l1o_B Probab=95.58 E-value=0.16 Score=30.18 Aligned_cols=86 Identities=15% Similarity=0.281 Sum_probs=62.3 Q ss_pred CCCEEEECCEEEEEEEEECC--------CEEEEEEECCCCCEEEEEEECCCCCCHHHHHHCCCCCEEEEEEEEEEEEECC Q ss_conf 98468427809988888479--------6499999849987799999778787012355306998799999976654578 Q gi|254780901|r 507 PNPVFAFPNHKLQSIRVVNL--------AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRG 578 (600) Q Consensus 507 peP~F~~~~~~i~~~r~vGk--------~Hlkl~l~~~~g~~i~aI~Fn~~~~~~~~~~~~~~g~~idii~~l~~N~~~G 578 (600) ++-.|.+.+..+..++++|. ....+.+.|..|..+++.+|--.+....+......|..+.+.|+++. |+| T Consensus 20 ~~~~f~i~g~~v~~V~iVG~V~~v~~~~t~~~y~IdDgTG~~i~v~~w~~~~~~~~~~~~i~~g~yVrV~G~lk~--~~~ 97 (132) T 3kdf_D 20 VDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRS--FQN 97 (132) T ss_dssp SSSCEEETTEECCEEEEEEEEEEEEECSSEEEEEEECSSSSCEEEEEEC---------CCCCTTCEEEEEEEEEE--ETT T ss_pred CCCCEEECCEEEEEEEEEEEEEEEEECCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEEEE--ECC T ss_conf 899789999999999999999999987978999998899994899997787756332540547999999999953--098 Q ss_pred CCEEEEEEEEEEECCCCC Q ss_conf 110589999801113112 Q gi|254780901|r 579 SKRCQLRVLDASPVEGHH 596 (600) Q Consensus 579 ~~s~QL~I~Di~p~e~~~ 596 (600) ++ |+.+..++|+++-+ T Consensus 98 ~~--~I~~~~i~~v~D~N 113 (132) T 3kdf_D 98 KK--SLVAFKIMPLEDMN 113 (132) T ss_dssp EE--EEEEEEEEECSSTH T ss_pred EE--EEEEEEEEEECCCC T ss_conf 58--99999999927957 No 9 >1nri_A Hypothetical protein HI0754; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3 Probab=95.40 E-value=0.18 Score=29.73 Aligned_cols=182 Identities=14% Similarity=0.134 Sum_probs=101.3 Q ss_pred HHCCCHHHHHHHHHHHHHCCCCEEEEECCCCC--HHHHHHHHHHHHHHCCCC---EEEEECCC----------CCCCCCC Q ss_conf 56148799999999999779979999407886--152899999999976994---79980787----------4336688 Q gi|254780901|r 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVD--GAASVALMMRFLSHCSVN---ANMYIPDR----------IVDGYGP 137 (600) Q Consensus 73 ~~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~D--Gitstail~~~L~~~g~~---v~~~IP~R----------~~eGYGl 137 (600) ..+++++++++.+.++++++-+|.++| +- |..+.-.-+++...++.+ +.+.+..= ..+.|.. T Consensus 52 ~~l~~I~~av~~i~~~l~~gGri~~~G---~GtSG~la~~~a~e~~~tf~~~~~~~~~~iaggd~al~~~~e~~ed~~~~ 128 (306) T 1nri_A 52 SCLPQISLAVEQIVQAFQQGGRLIYIG---AGTSGRLGVLDASECPPTFGVSTEMVKGIIAGGECAIRHPVEGAEDNTKA 128 (306) T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEE---SHHHHHHHHHHHHHHHHHHCCCTTSEEEEETTCTHHHHSCCTTGGGCTTH T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEC---CCCHHHHHHHHHHHHCCCCCCCHHHCCHHCCCCCHHHHHHHHHCCCCHHH T ss_conf 989999999999999997498599976---87239999999998646568982213000267938876566512464889 Q ss_pred CHHHHHHHHHCCCCEEEEECC-CCC--CHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHH Q ss_conf 978988742026868999648-876--23455555417982799615447655567256523788886433443047889 Q gi|254780901|r 138 NPSLMEKFINEGAQLIITVDC-GST--SYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGV 214 (600) Q Consensus 138 ~~~~i~~~~~~g~~LiItvD~-Gi~--~~e~i~~a~~~GidvIVtDHH~~~~~~p~a~aivNP~~~~~~~p~~~l~gaGv 214 (600) -..-+....-..-+++|.+-+ |.+ -.+++++|+++|+.+|.+-.-....-...++..|+|.....-.+...=..+|. T Consensus 129 ~~~~~~~~~i~~~DvvI~IS~SG~tp~vi~al~~Ak~~G~~ti~it~~~~s~l~~~ad~~I~~~~g~E~~~gs~r~~a~t 208 (306) T 1nri_A 129 VLNDLQSIHFSKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEIADIAIETIVGPEILTGSSRLKSGT 208 (306) T ss_dssp HHHHHHHTTCCTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHHSSEEEECCCCSCSSTTCTTTHHHH T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHCCEEEECCCCCCCCCCCCCCHHHH T ss_conf 99999995799888489996899964579999999972686699976887510021776785488976456765748999 Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH--CCCCCCCCCHHHHHHHHHHHHH Q ss_conf 9999999999702148876407799999998775420--1111444118999987887751 Q gi|254780901|r 215 VFLVLVLIYRILRQDNKVPLNFDLLSLLDLVALATVC--DVVPLIGLNRAYVVKGLMVARR 273 (600) Q Consensus 215 af~l~~al~~~l~~~~~~~~~~~l~~~ldlvaiGTva--D~vpL~~eNR~lvk~GL~~l~~ 273 (600) |-|++.-.. .-.-++-+|.|- +|+.+.--|..+.+.|.+.+.+ T Consensus 209 a~k~iLn~i----------------st~~~~~~gkv~~n~mvd~~~~n~kl~~r~~ri~~~ 253 (306) T 1nri_A 209 AQKMVLNML----------------TTASMILLGKCYENLMVDVQASNEKLKARAVRIVMQ 253 (306) T ss_dssp HHHHHHHHH----------------HHHHHHHTTSCBTTBCTTCCCCSHHHHHHHHHHHHH T ss_pred HHHHHHHHH----------------HHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHHHH T ss_conf 999999999----------------999999859865560100202763799999999998 No 10 >2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A Probab=95.39 E-value=0.18 Score=29.71 Aligned_cols=125 Identities=16% Similarity=0.251 Sum_probs=72.6 Q ss_pred CCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH--HHHHHHCCCC----EEEEECC-----CCCCCCCCC Q ss_conf 9955614879999999999977997999940788615289999--9999976994----7998078-----743366889 Q gi|254780901|r 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALM--MRFLSHCSVN----ANMYIPD-----RIVDGYGPN 138 (600) Q Consensus 70 ~dP~~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail--~~~L~~~g~~----v~~~IP~-----R~~eGYGl~ 138 (600) .+...++.+++|++.|.++++++.+|.++| .-|-.+.|.. .++...+..+ ......+ -+...+|.. T Consensus 42 ~~~~~~~~I~~aa~~i~~~~~~ggrI~~~G---nGgSa~~A~h~a~e~~~~~~~~~~~~~~~~l~~~~~~ta~~nd~~~~ 118 (212) T 2i2w_A 42 KDDANIHAIQRAAVLLADSFKAGGKVLSCG---NGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFN 118 (212) T ss_dssp HCHHHHHHHHHHHHHHHHHHHTTCCEEEEE---STHHHHHHHHHHHHHHHHHCTTSSSCSEEECCCTTCGGGGSCCCSCS T ss_pred HCHHHHHHHHHHHHHHHHHHHCCCEEEEEE---CCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCHHHHHHHHCCCCHH T ss_conf 564329999999999999998799799996---89525529989998718754344543212478878878887167789 Q ss_pred HHHHHHHHH--CCCCEEEEECC-CCC--CHHHHHHHHHCCCCEEEECCCCCCCCCCC-C-EEEECCC Q ss_conf 789887420--26868999648-876--23455555417982799615447655567-2-5652378 Q gi|254780901|r 139 PSLMEKFIN--EGAQLIITVDC-GST--SYDALQYATNQGIDVIVIDHHQVKSEEIP-A-YALVNPN 198 (600) Q Consensus 139 ~~~i~~~~~--~g~~LiItvD~-Gi~--~~e~i~~a~~~GidvIVtDHH~~~~~~p~-a-~aivNP~ 198 (600) ....+.+.. +.-|++|.... |.+ -.+++++|+++|+.||.+=+-. ...+.+ + +.+.-|. T Consensus 119 ~~f~~ql~~~~~~gDvli~iS~SG~s~nvi~al~~Ak~~G~~ti~lTg~~-g~~l~~~~Di~I~vps 184 (212) T 2i2w_A 119 DIFSRYVEAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKD-GGKMAGTADIEIRVPH 184 (212) T ss_dssp SHHHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETT-CGGGTTCSSEEEEECC T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCC-CCHHHHHCCEEEECCC T ss_conf 99999999857898879998089998328999999998599899997788-7336773998998699 No 11 >2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxane, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A Probab=94.02 E-value=0.37 Score=27.27 Aligned_cols=83 Identities=16% Similarity=0.290 Sum_probs=58.9 Q ss_pred EEEECCEEEEEEEEECC--------CEEEEEEECCCCCEEEEEEECCCCCCHHHHHHCCCCCEEEEEEEEEEEEECCCCE Q ss_conf 68427809988888479--------6499999849987799999778787012355306998799999976654578110 Q gi|254780901|r 510 VFAFPNHKLQSIRVVNL--------AHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKR 581 (600) Q Consensus 510 ~F~~~~~~i~~~r~vGk--------~Hlkl~l~~~~g~~i~aI~Fn~~~~~~~~~~~~~~g~~idii~~l~~N~~~G~~s 581 (600) .|.+-++.+..+++||. ..+.+.+.|..|..+++..|--.+..-.+......|..+.|.++++. |+|++. T Consensus 63 ~f~i~g~~v~~V~iVG~V~~v~~~~t~~~y~idDgTG~~i~~~~w~~~~~~~~~~~~i~~g~yVrV~G~lk~--f~~~~~ 140 (270) T 2pi2_A 63 VFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRS--FQNKKS 140 (270) T ss_dssp EEEETTEEESEEEEEEEEEEEEECSSEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEE--ETTEEE T ss_pred CEEECCEEEEEEEEEEEEEEEEECCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECC--CCCEEE T ss_conf 769999998999999999688856867899998799882799996378876433552447988999999723--398678 Q ss_pred EEEEEEEEEECCCCC Q ss_conf 589999801113112 Q gi|254780901|r 582 CQLRVLDASPVEGHH 596 (600) Q Consensus 582 ~QL~I~Di~p~e~~~ 596 (600) +.+.-++|++..+ T Consensus 141 --i~a~~i~~v~D~N 153 (270) T 2pi2_A 141 --LVAFKIMPLEDMN 153 (270) T ss_dssp --EEEEEEEECSCTH T ss_pred --EEEEEEEECCCCC T ss_conf --9999989747841 No 12 >2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus} Probab=94.00 E-value=0.38 Score=27.24 Aligned_cols=138 Identities=14% Similarity=0.119 Sum_probs=79.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCEEEEEEECCC Q ss_conf 89999999999899999999999999999998752112434750262057858122222278998842010799886379 Q gi|254780901|r 327 QELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEED 406 (600) Q Consensus 327 ~~a~~la~~L~~lN~~Rk~~e~~i~~~a~~~~~~~~~~~~~~~~ivv~~~~wh~GViGIVAsrL~e~y~kP~iv~s~~~d 406 (600) +...++.+++.++.++.+.++.++...-.+.+..........+++ +...+...-.+--++.++.++. .-+++++..++ T Consensus 32 ~~i~~l~~e~k~l~k~~~~l~~~~~~~~~~~l~~~~~~i~~~~vv-~~~~~~d~~~lr~l~~~l~~~~-~~~vl~~~~~~ 109 (171) T 2zvf_A 32 KTVERFFEEWKDQRKEIERLKSVIADLWADILMERAEEFDSMKVV-AEVVDADMQALQKLAERLAEKG-AVGCLMAKGEG 109 (171) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEESSSCEEE-EEECSCCHHHHHHHHHHHHHTT-EEEEEEEECSS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCEEEE-EEECCCCHHHHHHHHHHHHCCC-CEEEEEECCCC T ss_conf 999999999999999999999999999877776461677899888-6105899899999999984447-73897742688 Q ss_pred CEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCC-CCCCEEECCCCHHHHHHHHHHHHHHHC Q ss_conf 83799986489861888888530335301156532-223146422215889999999998622 Q gi|254780901|r 407 GKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHA-MAAGLTVERVNFGRLCDFFQKFAHNIV 468 (600) Q Consensus 407 g~~kGS~RSi~g~~l~~~l~~~~~~~ll~~~GGH~-~AaG~ti~~~~l~~f~~~l~~~~~~~~ 468 (600) ....-++.| .++|..+++...+.. +-.++||-+ +|=|=.=..++++++.+.+.+++.++. T Consensus 110 k~~v~~~~~-~~i~A~~ivk~~~~~-~~GkGGG~~~~AQggg~~~~~~~~~l~~~~~~l~~~~ 170 (171) T 2zvf_A 110 KVFVVTFSG-QKYDARELLREIGRV-AKGSGGGRKDVAQGAVQQLLDREEMLDVIFRFLSEHE 170 (171) T ss_dssp SEEEEEEES-SSSCHHHHHHHHHHH-HTEECCBCSSEEEEEESSCCCHHHHHHHHHHHHHHHT T ss_pred CEEEEECCC-CCCCHHHHHHHHHHH-CCCCCCCCHHHEEECCCCHHHHHHHHHHHHHHHHHHC T ss_conf 525775066-777899999999987-3998789668703479986789999999999998706 No 13 >3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} Probab=93.93 E-value=0.39 Score=27.14 Aligned_cols=89 Identities=11% Similarity=0.105 Sum_probs=63.2 Q ss_pred CCCCCCCEEEECCEEEEEEEEECC--------CEEEEEEECCCCCEEEEEEECCCCCCHH-HHHHCCCCCEEEEEEEEEE Q ss_conf 789998468427809988888479--------6499999849987799999778787012-3553069987999999766 Q gi|254780901|r 503 GAGNPNPVFAFPNHKLQSIRVVNL--------AHLQMTFESQDSETLQAIAFRVYGTPLG-EFLMQSRGKRMHVTGHLCV 573 (600) Q Consensus 503 G~gNpeP~F~~~~~~i~~~r~vGk--------~Hlkl~l~~~~g~~i~aI~Fn~~~~~~~-~~~~~~~g~~idii~~l~~ 573 (600) =+|+++=+|...|..|..++++|. +-..+.+.|..|..+++..|-......+ .......|..+.+.|+++ T Consensus 32 ~~g~e~~i~~~~n~PI~~V~ivG~Vvsv~~~~~~~~y~IDDgTG~~I~~~~w~~~~~~~~~~~~~i~~G~~VrV~G~l~- 110 (159) T 3kf6_A 32 HPHLQRYIGFWMGFPIRWIQIVGYIAAIDIYEGKHVLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKIN- 110 (159) T ss_dssp CCC---CCEEETTEEECEEEEEEEEEEEEEETTEEEEEEECSSSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEE- T ss_pred CCCCCCCEEEECCEEEEEEEEEEEEEEEEEECCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEE- T ss_conf 8786553499999978999999999999994566999998899991799998867744454355589895999999996- Q ss_pred EEECCCCEEEEEEEEEEECCCC Q ss_conf 5457811058999980111311 Q gi|254780901|r 574 NYWRGSKRCQLRVLDASPVEGH 595 (600) Q Consensus 574 N~~~G~~s~QL~I~Di~p~e~~ 595 (600) .|+|.+ |+.+..++|+++- T Consensus 111 -~f~~~r--qi~~~~i~~v~D~ 129 (159) T 3kf6_A 111 -SFRSEV--ELIAQSFEELRDP 129 (159) T ss_dssp -CSSSSC--EEEEEEEEEECST T ss_pred -ECCCEE--EEEEEEEEECCCH T ss_conf -619888--9999999990985 No 14 >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A Probab=93.27 E-value=0.35 Score=27.46 Aligned_cols=95 Identities=11% Similarity=0.105 Sum_probs=53.3 Q ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCCCCH-HHHHHHHHCCCCEEEEECCCC Q ss_conf 9999999779979999407886152899999999976994799807874-33668897-898874202686899964887 Q gi|254780901|r 83 RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI-VDGYGPNP-SLMEKFINEGAQLIITVDCGS 160 (600) Q Consensus 83 ~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~-~eGYGl~~-~~i~~~~~~g~~LiItvD~Gi 160 (600) +.|.+-+.+-++|.|+|--+--+-.|-.++ ++|+..|.++..+-|+.. .+..|... ..+.++ .+.+++++.+=... T Consensus 4 ~~i~~~L~~pksIAVVGaS~~~~k~g~~v~-~~L~~~g~~~~~v~p~~~~~~i~g~~~~~sl~di-p~~vDlv~i~vp~~ 81 (140) T 1iuk_A 4 QELRAYLSQAKTIAVLGAHKDPSRPAHYVP-RYLREQGYRVLPVNPRFQGEELFGEEAVASLLDL-KEPVDILDVFRPPS 81 (140) T ss_dssp HHHHHHHHHCCEEEEETCCSSTTSHHHHHH-HHHHHTTCEEEEECGGGTTSEETTEECBSSGGGC-CSCCSEEEECSCHH T ss_pred HHHHHHHHCCCEEEEEEECCCCCCCHHHHH-HHHHHCCCCEEEECCCCCCCEECCEEECCCHHHC-CCCCCEEEEEECHH T ss_conf 999999857896999810699998399999-9999789933887877765355682720656764-89873899980889 Q ss_pred CCHHHHHHHHHCCCCEEEE Q ss_conf 6234555554179827996 Q gi|254780901|r 161 TSYDALQYATNQGIDVIVI 179 (600) Q Consensus 161 ~~~e~i~~a~~~GidvIVt 179 (600) ...+.++.+.+.|+..++. T Consensus 82 ~v~~~v~e~~~~g~~~v~~ 100 (140) T 1iuk_A 82 ALMDHLPEVLALRPGLVWL 100 (140) T ss_dssp HHTTTHHHHHHHCCSCEEE T ss_pred HHHHHHHHHHHCCCCEEEE T ss_conf 9999999999629898998 No 15 >2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar binding protein, DNAA binding protein; 1.85A {Escherichia coli} Probab=92.14 E-value=0.47 Score=26.48 Aligned_cols=101 Identities=13% Similarity=0.246 Sum_probs=57.2 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH--HHHHHHHCCCCE---E-EEECCC------CCCCCCCCHHHHH Q ss_conf 487999999999997799799994078861528999--999999769947---9-980787------4336688978988 Q gi|254780901|r 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVAL--MMRFLSHCSVNA---N-MYIPDR------IVDGYGPNPSLME 143 (600) Q Consensus 76 ~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstai--l~~~L~~~g~~v---~-~~IP~R------~~eGYGl~~~~i~ 143 (600) ..+++|++.|.+++.++.||.++| .-|-.++|- -.++...++.+- . ...... ..-.||...-.-+ T Consensus 25 ~~i~~aa~~i~~~~~~~~kI~~~G---nGgSa~~A~h~a~~l~~~~~~~r~~l~ai~l~~~~~~~ta~~nD~~~~~~f~~ 101 (196) T 2yva_A 25 DAISRAAMTLVQSLLNGNKILCCG---NGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAK 101 (196) T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEE---STHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHH T ss_pred HHHHHHHHHHHHHHHCCCEEEEEE---CCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHCCCCCCHHHHHHHHH T ss_conf 999999999999998799899998---86728899999999866100256670489726770320222373368899999 Q ss_pred H---HHHCCCCEEEEECCC-CC--CHHHHHHHHHCCCCEEEEC Q ss_conf 7---420268689996488-76--2345555541798279961 Q gi|254780901|r 144 K---FINEGAQLIITVDCG-ST--SYDALQYATNQGIDVIVID 180 (600) Q Consensus 144 ~---~~~~g~~LiItvD~G-i~--~~e~i~~a~~~GidvIVtD 180 (600) . +... -+++|..-.+ -+ -.+++++|+++|+.+|..= T Consensus 102 ql~~~~~~-gDvli~iS~SGns~nvi~a~~~Ak~~g~~~i~lt 143 (196) T 2yva_A 102 QVRALGHA-GDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALT 143 (196) T ss_dssp HHHHHCCT-TCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEE T ss_pred HHHHHCCC-CCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEE T ss_conf 99973578-9779998489997439999999998699899994 No 16 >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} Probab=91.29 E-value=0.82 Score=24.61 Aligned_cols=101 Identities=23% Similarity=0.297 Sum_probs=55.1 Q ss_pred CHHHCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHH-H Q ss_conf 677718995561487999999999997799799994078861528999999999769947998078743366889789-8 Q gi|254780901|r 64 SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL-M 142 (600) Q Consensus 64 ~l~~l~~dP~~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~-i 142 (600) +-+.|+|||+.. -+|++.+ ++++=+++-|.--| .++.+-|...|..+..-.-+-.--|-|+.... + T Consensus 102 D~~~L~PD~~et---l~Aae~L---v~~GF~VlpY~~~D-------~~~ak~Le~~Gc~aVMPl~sPIGsg~Gi~n~~~l 168 (268) T 2htm_A 102 DPTYLLPDPLET---LKAAERL---IEEDFLVLPYMGPD-------LVLAKRLAALGTATVMPLAAPIGSGWGVRTRALL 168 (268) T ss_dssp CTTTTCCCHHHH---HHHHHHH---HHTTCEECCEECSC-------HHHHHHHHHHTCSCBEEBSSSTTTCCCSTTHHHH T ss_pred CCCCCCCCHHHH---HHHHHHH---HHCCCEEEEECCCC-------HHHHHHHHHCCCCEEEECHHHHCCCCCCCCHHHH T ss_conf 854679876569---9999999---85896899956878-------9999999876986787324243157640388788 Q ss_pred HHH-HHCCCCEEEEECCCCCCHHHHHHHHHCCCCEE Q ss_conf 874-20268689996488762345555541798279 Q gi|254780901|r 143 EKF-INEGAQLIITVDCGSTSYDALQYATNQGIDVI 177 (600) Q Consensus 143 ~~~-~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvI 177 (600) +-+ .++..+.-+.||-||..-.....|.++|.|-+ T Consensus 169 ~i~i~~~~~~vPvivDAGIG~pSdAa~aMElG~DaV 204 (268) T 2htm_A 169 ELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAV 204 (268) T ss_dssp HHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEE T ss_pred HHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEE T ss_conf 899987457787686358899899999997479899 No 17 >1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 function project, S2F, structural genomics, unknown functio; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A Probab=90.90 E-value=0.44 Score=26.74 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=23.9 Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECC Q ss_conf 86899964887623455555417982799615 Q gi|254780901|r 150 AQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 (600) Q Consensus 150 ~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDH 181 (600) -++++|+|. ..+-++.|.++|.|+|||-| T Consensus 36 ~kI~~alD~---t~~vi~~Ai~~g~dlIItHH 64 (247) T 1nmo_A 36 QKIVTGVTA---SQALLDEAVRLGADAVIVHH 64 (247) T ss_dssp CEEEEEEEC---CHHHHHHHHHTTCSEEEEEE T ss_pred CEEEEEECC---CHHHHHHHHHCCCCEEEECC T ss_conf 989999769---99999999977999999898 No 18 >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A Probab=90.84 E-value=0.9 Score=24.30 Aligned_cols=101 Identities=28% Similarity=0.350 Sum_probs=69.4 Q ss_pred CCHHHCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC-CHHH Q ss_conf 667771899556148799999999999779979999407886152899999999976994799807874336688-9789 Q gi|254780901|r 63 PSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP-NPSL 141 (600) Q Consensus 63 p~l~~l~~dP~~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl-~~~~ 141 (600) ++-+.|+|||+. .-+|++.+ ++++=+++.|.--| -++.+-|...|..+..-...-.--|-|+ |+.. T Consensus 103 ~D~~~LlPD~~e---tl~Aae~L---v~eGF~VlpY~~~D-------~v~akrLed~Gc~avMPlgsPIGSg~Gl~n~~~ 169 (264) T 1xm3_A 103 GCSRSLLPDPVE---TLKASEQL---LEEGFIVLPYTSDD-------VVLARKLEELGVHAIMPGASPIGSGQGILNPLN 169 (264) T ss_dssp CCTTTCCBCHHH---HHHHHHHH---HHTTCCEEEEECSC-------HHHHHHHHHHTCSCBEECSSSTTCCCCCSCHHH T ss_pred CCCCCCCCCHHH---HHHHHHHH---HHCCCEEEEEECCC-------HHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHH T ss_conf 898775988478---99999999---97898799960789-------899999997699199851340136877679899 Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEE Q ss_conf 887420268689996488762345555541798279 Q gi|254780901|r 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVI 177 (600) Q Consensus 142 i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvI 177 (600) ++.+.++ ++.-+.||-||..--....|.++|.|-+ T Consensus 170 l~~i~e~-~~vPvIVDAGIG~pSdAa~AMElG~DaV 204 (264) T 1xm3_A 170 LSFIIEQ-AKVPVIVDAGIGSPKDAAYAMELGADGV 204 (264) T ss_dssp HHHHHHH-CSSCBEEESCCCSHHHHHHHHHTTCSEE T ss_pred HHHHHHC-CCCCEEEECCCCCHHHHHHHHHCCCCEE T ss_conf 9999966-8988898479898889999997458899 No 19 >3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} Probab=89.62 E-value=1.1 Score=23.58 Aligned_cols=90 Identities=17% Similarity=0.074 Sum_probs=58.3 Q ss_pred CCCCEEEEE-CCCCCHHHHHH--HHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCC-CCHHHH Q ss_conf 799799994-07886152899--99999997699479980787433668897898874202686899964887-623455 Q gi|254780901|r 91 NSEKIMIFG-DYDVDGAASVA--LMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGS-TSYDAL 166 (600) Q Consensus 91 ~~ekI~I~g-DyD~DGitsta--il~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi-~~~e~i 166 (600) ++++|.+.- +.| +.-.+.. =+...++.+|.++.++-++.-.+ --.+.++.++..+++-||.+-... ...+.+ T Consensus 4 ~gk~Ig~i~~~~~-~~f~~~~~~g~~~~a~~~G~~~~~~~~~~d~~---~q~~~i~~~i~~~vDgiIi~~~~~~~~~~~l 79 (291) T 3l49_A 4 EGKTIGITAIGTD-HDWDLKAYQAQIAEIERLGGTAIALDAGRNDQ---TQVSQIQTLIAQKPDAIIEQLGNLDVLNPWL 79 (291) T ss_dssp TTCEEEEEESCCS-SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHH---HHHHHHHHHHHHCCSEEEEESSCHHHHHHHH T ss_pred CCCEEEEEECCCC-CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH---HHHHHHHHHHHCCCCEEEECCCCCHHHHHHH T ss_conf 8999999958999-88999999999999997499999993899999---9999999999749999997786403158999 Q ss_pred HHHHHCCCCEEEECCCCC Q ss_conf 555417982799615447 Q gi|254780901|r 167 QYATNQGIDVIVIDHHQV 184 (600) Q Consensus 167 ~~a~~~GidvIVtDHH~~ 184 (600) +.+++.||.||.+|...+ T Consensus 80 ~~~~~~~IPvv~~~~~~~ 97 (291) T 3l49_A 80 QKINDAGIPLFTVDTATP 97 (291) T ss_dssp HHHHHTTCCEEEESCCCT T ss_pred HHHHHCCCCEEECCCCCC T ss_conf 999986993784465457 No 20 >1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3 Probab=89.16 E-value=1.2 Score=23.33 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=55.7 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH--HHHHHHHCCCCE----EEEECCC------CCCCCCCCHHHH Q ss_conf 1487999999999997799799994078861528999--999999769947----9980787------433668897898 Q gi|254780901|r 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVAL--MMRFLSHCSVNA----NMYIPDR------IVDGYGPNPSLM 142 (600) Q Consensus 75 l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstai--l~~~L~~~g~~v----~~~IP~R------~~eGYGl~~~~i 142 (600) -+.+++|++.|.++++++.||.++| .-|-.+.|- -.++...++.+- ......- +...||...-.. T Consensus 25 ~~~I~~a~~~i~~~~~~~~kI~~~G---nGgSa~~A~h~a~~~~~~~~~~~~~~~~i~l~~~~~~~ta~~nd~~~~~~f~ 101 (188) T 1tk9_A 25 KGQIAKVGELLCECLKKGGKILICG---NGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFS 101 (188) T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEE---STHHHHHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHTCGGGHHH T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEE---CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 8999999999999998799899996---8731888999999845886456532222146787322233124589899999 Q ss_pred H---HHHHCCCCEEEEECCCCC---CHHHHHHHHHCCCCEEEECC Q ss_conf 8---742026868999648876---23455555417982799615 Q gi|254780901|r 143 E---KFINEGAQLIITVDCGST---SYDALQYATNQGIDVIVIDH 181 (600) Q Consensus 143 ~---~~~~~g~~LiItvD~Gi~---~~e~i~~a~~~GidvIVtDH 181 (600) + .....| |++|..-.+-+ =.+++++|+++|+.+|.+== T Consensus 102 ~ql~~~~~~g-DvlI~iS~SG~s~nii~a~~~Ak~~g~~~i~ltg 145 (188) T 1tk9_A 102 RQVEALGNEK-DVLIGISTSGKSPNVLEALKKAKELNMLCLGLSG 145 (188) T ss_dssp HHHHHHCCTT-CEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEE T ss_pred HHHHHHCCCC-CEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEC T ss_conf 9999837899-9899982899995577899999987998999957 No 21 >2qb7_A Exopolyphosphatase; A/B/A structure, DHH family phosphatase, hydrolase; 1.60A {Saccharomyces cerevisiae} PDB: 2qb6_A 2qb8_A* Probab=88.37 E-value=0.46 Score=26.60 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=20.3 Q ss_pred HHHHCCCC-EEEEECC--CCCHHHHHHHHHHHHHHCC Q ss_conf 99977997-9999407--8861528999999999769 Q gi|254780901|r 87 QAIYNSEK-IMIFGDY--DVDGAASVALMMRFLSHCS 120 (600) Q Consensus 87 ~ai~~~ek-I~I~gDy--D~DGitstail~~~L~~~g 120 (600) ..+.++.. +.|+|.- |.|.+.|+-.+..++...| T Consensus 21 ~~~~~~~~~~iV~Gh~~pDlDSi~SAiala~~~~~~~ 57 (397) T 2qb7_A 21 SKIASNDVLTICVGNESADMDSIASAITYSYCQYIYN 57 (397) T ss_dssp HHHSBTTEEEEEECCTTCCHHHHHHHHHHHHHHHHHH T ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCC T ss_conf 9986169848996999986789999999999999649 No 22 >3cvj_A Putative phosphoheptose isomerase; NP_244191.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125} Probab=88.29 E-value=1.3 Score=22.92 Aligned_cols=100 Identities=18% Similarity=0.289 Sum_probs=55.6 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC--CEEEEECCCCCCCCCCC------------HHH Q ss_conf 4879999999999977997999940788615289999999997699--47998078743366889------------789 Q gi|254780901|r 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV--NANMYIPDRIVDGYGPN------------PSL 141 (600) Q Consensus 76 ~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~--~v~~~IP~R~~eGYGl~------------~~~ 141 (600) ..++++++.+.+++.++.+|.+|| =|- |..+..++..+++. ...........-..+.. ... T Consensus 26 ~~i~~aa~~ia~~i~~~~rI~i~G----~G~-S~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 100 (243) T 3cvj_A 26 QAIIKGAHLVSEAVMNGGRFYVFG----SGH-SHMIAEEIYNRAGGLALVTAILPPELMLHERPNKSTYLERIEGLSKSY 100 (243) T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEE----SGG-GHHHHHHTSSSTTCBTTEEECCCGGGSSSSSTTHHHHHTTCTTHHHHH T ss_pred HHHHHHHHHHHHHHHCCCEEEEEE----CCC-CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 999999999999997599899992----784-127799999984788765522354212455245666766455689999 Q ss_pred HHHHHHCCCCEEEEE-CCCCC--CHHHHHHHHHCCCCEEEEC Q ss_conf 887420268689996-48876--2345555541798279961 Q gi|254780901|r 142 MEKFINEGAQLIITV-DCGST--SYDALQYATNQGIDVIVID 180 (600) Q Consensus 142 i~~~~~~g~~LiItv-D~Gi~--~~e~i~~a~~~GidvIVtD 180 (600) ++...-..-|++|.. -.|.+ -.+.+++|+++|+.||.+= T Consensus 101 ~~~~~i~~~DvvI~iS~SG~t~~vi~a~~~AK~~G~~vIaIT 142 (243) T 3cvj_A 101 LKLHQVTNKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMT 142 (243) T ss_dssp HHHTTCCTTCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEE T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEE T ss_conf 998079999999997789999999999999998799499980 No 23 >3brs_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans isdg} Probab=86.08 E-value=1.8 Score=22.03 Aligned_cols=71 Identities=21% Similarity=0.320 Sum_probs=48.2 Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCC-HHHHHHHHHCCCCEEEECCCC Q ss_conf 999999769947998078743366889789887420268689996488762-345555541798279961544 Q gi|254780901|r 112 MMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS-YDALQYATNQGIDVIVIDHHQ 183 (600) Q Consensus 112 l~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~-~e~i~~a~~~GidvIVtDHH~ 183 (600) +.++.+.+|.++.+..|+... ...-..+.++.+...+++-||.+-....+ .+.++.+.+.||-||..|.=. T Consensus 29 ~~~aa~~~g~~~~~~~~~~~~-d~~~q~~~i~~li~~~~dgIii~~~~~~~~~~~l~~a~~~gIpvv~~d~~~ 100 (289) T 3brs_A 29 AQMAAKEYEIKLEFMAPEKEE-DYLVQNELIEEAIKRKPDVILLAAADYEKTYDAAKEIKDAGIKLIVIDSGM 100 (289) T ss_dssp HHHHHHHHTCEEEECCCSSTT-CHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHHHTTTGGGTCEEEEESSCC T ss_pred HHHHHHHCCCEEEEEECCCCC-CHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 999999829989999689988-999999999999976999999968841536999999997599879995145 No 24 >1t70_A Phosphatase; crystal, X-RAY crystallography, structural genomics, berkeley structural genomics center, BSGC, PSI; 2.30A {Deinococcus radiodurans R1} SCOP: d.159.1.9 Probab=85.09 E-value=1.1 Score=23.57 Aligned_cols=70 Identities=16% Similarity=0.280 Sum_probs=54.3 Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECC--CCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHH Q ss_conf 799994078861528999999999769947998078--7433668897898874202686899964887623455 Q gi|254780901|r 94 KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD--RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDAL 166 (600) Q Consensus 94 kI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~--R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i 166 (600) +|+..| |+=|-++.-.+.+.|..+..++.+.|-| -...|+|++++..+++.+.|++.| |.-|=+=+..++ T Consensus 2 kiLfiG--DIvG~~Gr~~v~~~Lp~lk~~~DfVIaNgENaa~G~Git~~~~~~L~~~GvDvI-T~GNH~wd~kei 73 (255) T 1t70_A 2 RVLFIG--DVFGQPGRRVLQNHLPTIRPQFDFVIVNMENSAGGFGMHRDAARGALEAGAGCL-TLGNHAWHHKDI 73 (255) T ss_dssp EEEEEC--CBBHHHHHHHHHHHHHHHGGGCSEEEEECTBTTTTSSCCHHHHHHHHHHTCSEE-ECCTTTTSSTTH T ss_pred EEEEEE--ECCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCEE-ECCCCCCCCCCH T ss_conf 399998--268988999999871877850989999985478986899999999997199799-447410338600 No 25 >2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiative, PSI-2; 2.81A {Galdieria sulphuraria} Probab=84.45 E-value=1 Score=23.94 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=18.9 Q ss_pred CCHHHHHHHHHCCCCEEEECCCCCCCCCC Q ss_conf 62345555541798279961544765556 Q gi|254780901|r 161 TSYDALQYATNQGIDVIVIDHHQVKSEEI 189 (600) Q Consensus 161 ~~~e~i~~a~~~GidvIVtDHH~~~~~~p 189 (600) ++.++..+|.+.|.+.|=+|=+...+..| T Consensus 24 NTl~a~~~a~~~g~~~iE~DV~~T~Dg~l 52 (258) T 2o55_A 24 NTLRSFVLCMERNIPYIETDLRVCKTGEI 52 (258) T ss_dssp TCHHHHHHHHHTTCCEEEEEEEECTTSCE T ss_pred CHHHHHHHHHHCCCCEEEEEEEEECCCCE T ss_conf 38999999998597989998899318978 No 26 >2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein/lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A Probab=84.24 E-value=1 Score=23.87 Aligned_cols=97 Identities=20% Similarity=0.264 Sum_probs=52.1 Q ss_pred HCCCCHHHCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH---------HHHHHHHCCCCEEEEECCC Q ss_conf 6196677718995561487999999999997799799994078861528999---------9999997699479980787 Q gi|254780901|r 60 FLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVAL---------MMRFLSHCSVNANMYIPDR 130 (600) Q Consensus 60 fL~p~l~~l~~dP~~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstai---------l~~~L~~~g~~v~~~IP~R 130 (600) |+.+.-..+ +|.....+++.++.+.. ...-+|.|.|..|.-|-.+.-. ...+|...|.+ |+| T Consensus 9 yF~~~s~~l--~~~~~~~L~~ia~~L~~--~p~~~i~I~GhtD~~g~~~~N~~LS~~RA~~V~~~L~~~Gi~-----~~r 79 (118) T 2hqs_H 9 YFDLDKYDI--RSDFAQMLDAHANFLRS--NPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVS-----ADQ 79 (118) T ss_dssp ECCTTCCCC--CGGGHHHHHHHHHHHHH--CTTCCEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHHHTTCC-----GGG T ss_pred EEECCCCCC--CHHHHHHHHHHHHHHHH--CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-----CCE T ss_conf 940897607--99899999999999977--899199999972899876566779999999999999984998-----046 Q ss_pred CC-CCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCC Q ss_conf 43-366889789887420268689996488762345555541798279961544 Q gi|254780901|r 131 IV-DGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 (600) Q Consensus 131 ~~-eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~ 183 (600) +. .|||-.... ++|+ .+-.+++.+-++++++.||. T Consensus 80 I~~~g~G~~~p~--------------~~~~----~~~~~~~NRRVeiv~ik~~~ 115 (118) T 2hqs_H 80 ISIVSYGKEKPA--------------VLGH----DEAAYSKNRRAVLVYLEHHH 115 (118) T ss_dssp EEEEECTTSSCS--------------SCCS----SHHHHHHHSEEEEECC---- T ss_pred EEEEEECCCCCC--------------CCCC----CHHHHHHCCCEEEEEEEECC T ss_conf 999997465777--------------8991----97789865989999998516 No 27 >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} Probab=84.05 E-value=2.1 Score=21.36 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=24.6 Q ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 7799799994078861528999999999769947998078 Q gi|254780901|r 90 YNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD 129 (600) Q Consensus 90 ~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~ 129 (600) +.++||+|+| + |.-+++| .+.|+..|.+|..|=.+ T Consensus 6 ~~~r~V~IIG---l-GlIG~Sl-a~aL~~~g~~V~g~D~~ 40 (341) T 3ktd_A 6 DISRPVCILG---L-GLIGGSL-LRDLHAANHSVFGYNRS 40 (341) T ss_dssp CCSSCEEEEC---C-SHHHHHH-HHHHHHTTCCEEEECSC T ss_pred CCCCCEEEEE---E-CHHHHHH-HHHHHHCCCEEEEEECC T ss_conf 8998189997---4-9899999-99998787989999899 No 28 >2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus HB8} SCOP: d.159.1.10 PDB: 2cv9_A Probab=84.00 E-value=1.8 Score=22.03 Aligned_cols=75 Identities=12% Similarity=0.209 Sum_probs=55.6 Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECC--CCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHH-HHHH Q ss_conf 799994078861528999999999769947998078--7433668897898874202686899964887623455-5554 Q gi|254780901|r 94 KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPD--RIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDAL-QYAT 170 (600) Q Consensus 94 kI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~--R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i-~~a~ 170 (600) ||+..| |+=|-++--.+.+.|..+..++.+.|-| -...|+|++++..+++.+.|++.| |.-|=+=+..++ ++.. T Consensus 2 ~iLfiG--DIvG~~Gr~~v~~~Lp~l~~~~DfvIaNgENaa~G~Git~~~~~~l~~~GvDvi-T~GNH~wd~kei~~~i~ 78 (252) T 2z06_A 2 RVLFIG--DVMAEPGLRAVGLHLPDIRDRYDLVIANGENAARGKGLDRRSYRLLREAGVDLV-SLGNHAWDHKEVYALLE 78 (252) T ss_dssp EEEEEC--CBCHHHHHHHHHHHHHHHGGGCSEEEEECTTTTTTSSCCHHHHHHHHHHTCCEE-ECCTTTTSCTTHHHHHH T ss_pred EEEEEE--ECCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCEE-ECCCHHHCCHHHHHHHH T ss_conf 599997--168988999999876776751889999513578886899999999998198599-73844324557898762 Q ss_pred H Q ss_conf 1 Q gi|254780901|r 171 N 171 (600) Q Consensus 171 ~ 171 (600) + T Consensus 79 ~ 79 (252) T 2z06_A 79 S 79 (252) T ss_dssp H T ss_pred C T ss_conf 0 No 29 >3ke8_A 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; induced FIT mechanism, FS4-iron-sulfure-cluster, 3Fe-4S, iron, iron-sulfur; HET: EIP; 1.70A {Escherichia coli} PDB: 3ke9_A* 3kef_A* 3kel_A 3kem_A* 3f7t_A Probab=82.81 E-value=2.3 Score=21.13 Aligned_cols=108 Identities=14% Similarity=0.162 Sum_probs=64.2 Q ss_pred CHHHC-CCHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC-------CCCCCHHH Q ss_conf 95561-4879999999999977-997999940788615289999999997699479980787433-------66889789 Q gi|254780901|r 71 DPLIL-TDCDKAARRIVQAIYN-SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD-------GYGPNPSL 141 (600) Q Consensus 71 dP~~l-~dm~~A~~ri~~ai~~-~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~e-------GYGl~~~~ 141 (600) .|..| .+..+|++...++.++ +++|.++|+ +.----..+-|+..|..+.--+ +...+ .||.+++. T Consensus 17 ~~~GFC~GV~rAi~~a~~~~~~~~~~vy~lG~-----iVHN~~vv~~L~~~Gv~~v~~~-~ev~~~~~vIirAHGv~~~~ 90 (326) T 3ke8_A 17 NPRGFCAGVDRAISIVENALAIYGAPIYVRHE-----VVHNRYVVDSLRERGAIFIEQI-SEVPDGAILIFSAHGVSQAV 90 (326) T ss_dssp SSCSCCHHHHHHHHHHHHHHHHHCSCEEEESC-----SSSCHHHHHHHHHHTEEEESSG-GGSCTTCEEEECTTCCCHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCEEECCC-----CCCCHHHHHHHHHCCCEECCCH-HHCCCCCEEEEECCCCCHHH T ss_conf 88997814999999999999871997877785-----7559899999998879980566-54899987999425678899 Q ss_pred HHHHHHCCCCEEEEECCC--CCCHHHHHHHHHCCCCEEEECCCCCC Q ss_conf 887420268689996488--76234555554179827996154476 Q gi|254780901|r 142 MEKFINEGAQLIITVDCG--STSYDALQYATNQGIDVIVIDHHQVK 185 (600) Q Consensus 142 i~~~~~~g~~LiItvD~G--i~~~e~i~~a~~~GidvIVtDHH~~~ 185 (600) .+++.+.|..++ =.-|- ...+..++...+.|-.+||.-|+.-| T Consensus 91 ~~~~~~~g~~vi-DaTCP~V~kvh~~v~~~~~~Gy~iiiiG~~~Hp 135 (326) T 3ke8_A 91 RNEAKSRDLTVF-DATCPLVTKVHMEVARASRRGEESILIGHAGHP 135 (326) T ss_dssp HHHHHHTTCEEE-ECCCHHHHHHHHHHHHHHHTTCEEEEESCTTCH T ss_pred HHHHHHCCCEEE-ECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCH T ss_conf 999997799799-687977359999999987189759999668866 No 30 >3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; trilobal strucure, open alpha/beta, 3Fe-4S, iron, iron- sulfur; 1.65A {Aquifex aeolicus} Probab=82.36 E-value=2.5 Score=20.88 Aligned_cols=106 Identities=15% Similarity=0.214 Sum_probs=62.2 Q ss_pred CHHHC-CCHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-------CCCCHHH Q ss_conf 95561-4879999999999977-9979999407886152899999999976994799807874336-------6889789 Q gi|254780901|r 71 DPLIL-TDCDKAARRIVQAIYN-SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG-------YGPNPSL 141 (600) Q Consensus 71 dP~~l-~dm~~A~~ri~~ai~~-~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eG-------YGl~~~~ 141 (600) .|..| .+..+|++...++.++ +++|.++|+- .----..+.|+..|..+ .=.+...+| ||.+++. T Consensus 8 ~~~GFC~GV~rAi~~a~~~~~~~~~~vy~lG~i-----VHN~~vv~~L~~~GV~~--~~~~~~~~g~~ViirAHGv~~~v 80 (297) T 3dnf_A 8 EHAGFCFGVKRAVKLAEESLKESQGKVYTLGPI-----IHNPQEVNRLKNLGVFP--SQGEEFKEGDTVIIRSHGIPPEK 80 (297) T ss_dssp TTCSSCHHHHHHHHHHHHHTTTCCSCEEESSCS-----SSCHHHHHHHHHHTEEE--CCSSCCCTTCEEEECTTCCCHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCC-----CCCHHHHHHHHHCCCEE--CCHHHCCCCCEEEEECCCCCHHH T ss_conf 899979259999999999997459978985888-----68989999999689987--54222555544776026998899 Q ss_pred HHHHHHCCCCEEEEECCC--CCCHHHHHHHHHCCCCEEEECCCCC Q ss_conf 887420268689996488--7623455555417982799615447 Q gi|254780901|r 142 MEKFINEGAQLIITVDCG--STSYDALQYATNQGIDVIVIDHHQV 184 (600) Q Consensus 142 i~~~~~~g~~LiItvD~G--i~~~e~i~~a~~~GidvIVtDHH~~ 184 (600) .+++.+.|..++ =.-|. ...+..++...+.|..+||.-|..- T Consensus 81 ~~~~~~~gl~vi-DaTCP~V~kvh~~v~~~~~~Gy~iiiiG~~~H 124 (297) T 3dnf_A 81 EEALRKKGLKVI-DATCPYVKAVHEAVCQLTREGYFVVLVGEKNH 124 (297) T ss_dssp HHHHHHTTCEEE-ECCCHHHHHHHHHHHHHHHTTCEEEEESCTTC T ss_pred HHHHHHCCCEEE-ECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC T ss_conf 999997199199-78783538999999999857978999757998 No 31 >2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest center for structural genomics, MCSG; 2.40A {Streptococcus pneumoniae TIGR4} SCOP: c.135.1.1 Probab=80.95 E-value=1.7 Score=22.15 Aligned_cols=31 Identities=19% Similarity=0.539 Sum_probs=25.4 Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCC Q ss_conf 8689996488762345555541798279961544 Q gi|254780901|r 150 AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 (600) Q Consensus 150 ~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~ 183 (600) .++++++|. ..+.++.|.++|+|+|||-|.. T Consensus 39 ~~I~valD~---t~~vi~~Ai~~~~dlIItHHP~ 69 (267) T 2fyw_A 39 QRVMVALDI---REETVAEAIEKGVDLIIVKHAP 69 (267) T ss_dssp SEEEEESCC---CHHHHHHHHHTTCSEEEESSCS T ss_pred CEEEEEECC---CHHHHHHHHHCCCCEEEECCCC T ss_conf 889999649---9999999998699999976862 No 32 >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 Probab=80.95 E-value=1.8 Score=21.87 Aligned_cols=70 Identities=10% Similarity=0.139 Sum_probs=46.4 Q ss_pred HHHHHHHCCCCEEEEE-CCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCC Q ss_conf 9999997699479980-7874336688978988742026868999648876234555554179827996154 Q gi|254780901|r 112 MMRFLSHCSVNANMYI-PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 (600) Q Consensus 112 l~~~L~~~g~~v~~~I-P~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH 182 (600) +.+.+...|++--+++ -++-.+++..+...++.+... +.+-++++.||.+.+.++.+-+.|.+-+|+.-+ T Consensus 36 ~a~~~~~~g~dei~ivDl~~~~~~~~~~~~~i~~i~~~-~~~pi~~gGGIr~~e~~~~ll~~G~~kvii~S~ 106 (252) T 1ka9_F 36 AARAYDEAGADELVFLDISATHEERAILLDVVARVAER-VFIPLTVGGGVRSLEDARKLLLSGADKVSVNSA 106 (252) T ss_dssp HHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHHHHTCSEEEECHH T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHCCCCEEEECCH T ss_conf 99999986999899995325423340289999998751-487457736826788878998738989998842 No 33 >2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli} Probab=80.82 E-value=2.8 Score=20.49 Aligned_cols=73 Identities=11% Similarity=0.098 Sum_probs=48.5 Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCC-CCCHHHHHHHHHCCCCEEEECCCCCCC Q ss_conf 9999999769947998078743366889789887420268689996488-762345555541798279961544765 Q gi|254780901|r 111 LMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG-STSYDALQYATNQGIDVIVIDHHQVKS 186 (600) Q Consensus 111 il~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~G-i~~~e~i~~a~~~GidvIVtDHH~~~~ 186 (600) -+...++.+|.++.+.-.+.-.+ -..+.++.+...+++-||.+-.. ....+.++.|++.||-||..|...++. T Consensus 23 ~~~~~a~~~G~~~~~~~~~~~~~---~q~~~i~~li~~~vDgIii~~~~~~~~~~~i~~a~~~gipvv~~d~~~~~~ 96 (306) T 2vk2_A 23 VAKSEAEKRGITLKIADGQQKQE---NQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 96 (306) T ss_dssp HHHHHHHHHTCEEEEEECTTCHH---HHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHHHHTTCCEEEESSCCCCS T ss_pred HHHHHHHHCCCEEEEEECCCCHH---HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCC T ss_conf 99999998699899995999999---999999999976989999907882115999999997698199981455666 No 34 >3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding protein, alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} Probab=80.23 E-value=2.9 Score=20.35 Aligned_cols=69 Identities=7% Similarity=0.164 Sum_probs=38.9 Q ss_pred HHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCC--CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCC Q ss_conf 99769947998078743366889789887420268--6899964887623455555417982799615447655 Q gi|254780901|r 116 LSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGA--QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 (600) Q Consensus 116 L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~--~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~~~~~ 187 (600) .+.+|.++.+.-+++-.+ ...+.++.+...++ ..++.++.....-+-++.+++.||.||+.|....... T Consensus 30 A~~~G~~l~v~~~~~d~~---~q~~~i~~~i~~~~~~~~i~~~~~~~~~~~il~~a~~~gIpvv~vd~~~~~~~ 100 (350) T 3h75_A 30 ARDLGLDLRILYAERDPQ---NTLQQARELFQGRDKPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSPLTLDQ 100 (350) T ss_dssp HHHHTCEEEEEECTTCHH---HHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESCCCTTT T ss_pred HHHCCCEEEEEECCCCHH---HHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCH T ss_conf 997399899995899999---99999999995699869999678320369999999986994999468776420 No 35 >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 Probab=79.78 E-value=3 Score=20.25 Aligned_cols=96 Identities=20% Similarity=0.313 Sum_probs=59.5 Q ss_pred HCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC-CHHHHHHHHHCCCCE Q ss_conf 6148799999999999779979999407886152899999999976994799807874336688-978988742026868 Q gi|254780901|r 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP-NPSLMEKFINEGAQL 152 (600) Q Consensus 74 ~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl-~~~~i~~~~~~g~~L 152 (600) ++||+.+-++-...-++.+=.++.|...| .++.+-|...|..+..-.-.=+--|-|+ |+..++.+.++ .+. T Consensus 117 L~Pd~~etl~Aa~~Lvk~gF~VlpY~~dD-------~~~ak~L~d~Gc~avMPlgsPIGSg~Gi~n~~~l~~i~~~-~~v 188 (265) T 1wv2_A 117 LFPNVVETLKAAEQLVKDGFDVMVYTSDD-------PIIARQLAEIGCIAVMPLAGLIGSGLGICNPYNLRIILEE-AKV 188 (265) T ss_dssp CCBCHHHHHHHHHHHHTTTCEEEEEECSC-------HHHHHHHHHSCCSEEEECSSSTTCCCCCSCHHHHHHHHHH-CSS T ss_pred CCCCHHHHHHHHHHHHHCCCEEEECCCCC-------HHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHHC-CCC T ss_conf 89778899999999997897796247846-------9999998754963754483210112463677899999853-895 Q ss_pred EEEECCCCCCHHHHHHHHHCCCCEE Q ss_conf 9996488762345555541798279 Q gi|254780901|r 153 IITVDCGSTSYDALQYATNQGIDVI 177 (600) Q Consensus 153 iItvD~Gi~~~e~i~~a~~~GidvI 177 (600) -+.||-||..-.....|.++|.|-+ T Consensus 189 pviVDAGIG~pSdAa~aMElG~DaV 213 (265) T 1wv2_A 189 PVLVDAGVGTASDAAIAMELGCEAV 213 (265) T ss_dssp CBEEESCCCSHHHHHHHHHHTCSEE T ss_pred EEEEECCCCCHHHHHHHHHCCCCEE T ss_conf 2997468897889999997148889 No 36 >2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A Probab=79.58 E-value=3 Score=20.20 Aligned_cols=108 Identities=21% Similarity=0.268 Sum_probs=59.1 Q ss_pred CCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH--HHHHHHCCC-----CEEEEECCC-------CCCCC Q ss_conf 9955614879999999999977997999940788615289999--999997699-----479980787-------43366 Q gi|254780901|r 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALM--MRFLSHCSV-----NANMYIPDR-------IVDGY 135 (600) Q Consensus 70 ~dP~~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail--~~~L~~~g~-----~v~~~IP~R-------~~eGY 135 (600) .+-...+.++++++.+.+++.++.+|.++| +-|-.+.|-. .++....+. .+...-.+. -.+|| T Consensus 26 ~~~~~~~~I~~aa~~i~~~l~~~gkI~~~G---~G~S~~~A~~~a~~l~~~~~~~r~~l~a~~l~~~~~~~ta~~nd~~~ 102 (198) T 2xbl_A 26 ADERLLATVRKVADACIASIAQGGKVLLAG---NGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGY 102 (198) T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCCEEEEC---STHHHHHHHHHHHHHHSCSSSCCCCCCEEETTCCHHHHHHHHHHHCG T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEE---CCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCH T ss_conf 306459999999999999998799799997---88007779999999711111466451578733764312040034667 Q ss_pred CC-CHHHHHHHHHCCCCEEEEECCCCCC---HHHHHHHHHCCCCEEEECC Q ss_conf 88-9789887420268689996488762---3455555417982799615 Q gi|254780901|r 136 GP-NPSLMEKFINEGAQLIITVDCGSTS---YDALQYATNQGIDVIVIDH 181 (600) Q Consensus 136 Gl-~~~~i~~~~~~g~~LiItvD~Gi~~---~e~i~~a~~~GidvIVtDH 181 (600) .. -.+.++..... -|++|...++-.+ .+++++|+++|+.||.+=- T Consensus 103 ~~~~~~ql~~~~~~-gDvli~iS~SG~s~~ii~a~~~Ak~~g~~~iaitg 151 (198) T 2xbl_A 103 EKLFSRQVQALGNE-GDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTG 151 (198) T ss_dssp GGTTHHHHHHHCCT-TCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEC T ss_pred HHHHHHHHHHCCCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEC T ss_conf 89999999962799-99899970899976899999999985998999968 No 37 >3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix} Probab=78.67 E-value=2.2 Score=21.28 Aligned_cols=21 Identities=19% Similarity=0.056 Sum_probs=13.7 Q ss_pred HHHHHHHHHHHHCCCCEEEEE Q ss_conf 999999999997799799994 Q gi|254780901|r 79 DKAARRIVQAIYNSEKIMIFG 99 (600) Q Consensus 79 ~~A~~ri~~ai~~~ekI~I~g 99 (600) ++|++...+.+.+....+|.| T Consensus 62 ~~a~~~a~~Li~~~~v~~i~g 82 (391) T 3eaf_A 62 TTAEEYYREFRDRYGVIAIIG 82 (391) T ss_dssp HHHHHHHHHHHHTTCCSEEEE T ss_pred HHHHHHHHHHHHCCCCEEEEE T ss_conf 999999999985599389990 No 38 >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A Probab=77.33 E-value=3.1 Score=20.06 Aligned_cols=25 Identities=8% Similarity=0.046 Sum_probs=13.5 Q ss_pred CHHHHHHHHHH-HHHHCCCCEEEEEC Q ss_conf 61528999999-99976994799807 Q gi|254780901|r 104 DGAASVALMMR-FLSHCSVNANMYIP 128 (600) Q Consensus 104 DGitstail~~-~L~~~g~~v~~~IP 128 (600) ..-|=|-+=.+ +.+++|+++.+.=| T Consensus 55 epSTRTR~SFe~A~~~LG~~vi~~~~ 80 (315) T 1pvv_A 55 KPSTRTRVSFEVAMAHLGGHALYLNA 80 (315) T ss_dssp SCCSHHHHHHHHHHHHTTSEEEEEEG T ss_pred CCCCCHHHHHHHHHHHCCCCEEEECC T ss_conf 89730589999999976995432042 No 39 >2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown function; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A* Probab=75.51 E-value=2.8 Score=20.46 Aligned_cols=29 Identities=21% Similarity=0.579 Sum_probs=23.5 Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECC Q ss_conf 86899964887623455555417982799615 Q gi|254780901|r 150 AQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 (600) Q Consensus 150 ~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDH 181 (600) -++++|+|. ..+-+++|.+.|.|+|||-| T Consensus 41 ~~IlvalD~---t~~vi~eAi~~~adlIitHH 69 (370) T 2nyd_A 41 TGVLTALDC---TLEVVNEAIEKGYNTIISHH 69 (370) T ss_dssp CCEEEESSC---CHHHHHHHHHHTCCEEEESS T ss_pred CEEEEEECC---CHHHHHHHHHCCCCEEEECC T ss_conf 889999679---99999999977999999799 No 40 >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A Probab=75.43 E-value=3.8 Score=19.36 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=46.8 Q ss_pred HHHHHHHCCCCEEEE-ECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECC Q ss_conf 999999769947998-0787433668897898874202686899964887623455555417982799615 Q gi|254780901|r 112 MMRFLSHCSVNANMY-IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 (600) Q Consensus 112 l~~~L~~~g~~v~~~-IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDH 181 (600) +.+.+...|++--+. =.++..+++..+.+.++++.+. +.+-|+++-|+.+.+.++.+-+.|.+=+|+.- T Consensus 35 ~a~~~~~~g~dei~ivDld~~~~~~~~~~~~i~~i~~~-~~~pi~~gGGir~~e~~~~~l~~Ga~kVvigs 104 (253) T 1thf_D 35 LGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQ-IDIPFTVGGGIHDFETASELILRGADKVSINT 104 (253) T ss_dssp HHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTT-CCSCEEEESSCCSHHHHHHHHHTTCSEEEESH T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH-CCCCEEEECCEEECCCHHHHHHCCCCEEEECH T ss_conf 99999986998899984124334643389999999973-59975874557522217889874999999884 No 41 >3fxa_A SIS domain protein; YP_013136.1, putative sugar-phosphate isomerase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Listeria monocytogenes str} Probab=74.91 E-value=3.9 Score=19.27 Aligned_cols=91 Identities=19% Similarity=0.346 Sum_probs=46.7 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH--HHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEE Q ss_conf 8799999999999779979999407886152899--99999997699479980787433668897898874202686899 Q gi|254780901|r 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVA--LMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154 (600) Q Consensus 77 dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitsta--il~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiI 154 (600) .+++|++.|.+| +.||.+|| + |-++.+ -+..-|..+|..+.++-+.-... + ....+ .. -+++| T Consensus 33 ~~~~av~~i~~a---~~rI~~~G---~-G~S~~ia~~~~~kl~~lG~~~~~~~d~~~~~--~----~~~~~-~~-~Dv~I 97 (201) T 3fxa_A 33 ALVKTVEKIAEC---TGKIVVAG---C-GTSGVAAKKLVHSFNCIERPAVFLTPSDAVH--G----TLGVL-QK-EDILI 97 (201) T ss_dssp HHHHHHHHHHHC---SSCEEEEC---C-THHHHHHHHHHHHHHHTTCCEEECCHHHHTT--T----GGGGC-CT-TCEEE T ss_pred HHHHHHHHHHHC---CCCEEEEE---E-CHHHHHHHHHHHHHHHCCCCEEECCCHHHHH--H----HHCCC-CC-CCEEE T ss_conf 999999999808---99389997---7-7799999999999986899658579378899--8----84388-97-88899 Q ss_pred EE-CCCCC--CHHHHHHHHHCCCCEEEECCC Q ss_conf 96-48876--234555554179827996154 Q gi|254780901|r 155 TV-DCGST--SYDALQYATNQGIDVIVIDHH 182 (600) Q Consensus 155 tv-D~Gi~--~~e~i~~a~~~GidvIVtDHH 182 (600) .+ -.|-+ -.+.++.|+++|+.+|.+-.+ T Consensus 98 ~iS~SG~t~e~i~~~~~ak~~g~~vI~IT~~ 128 (201) T 3fxa_A 98 LISKGGNTGELLNLIPACKTKGSTLIGVTEN 128 (201) T ss_dssp EECSSSCCHHHHTTHHHHHHHTCEEEEEESC T ss_pred EECCCCCCHHHHHHHHHHHHCCCEEEEEECC T ss_conf 8789999578999999999839808998368 No 42 >2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B* Probab=74.66 E-value=4 Score=19.22 Aligned_cols=68 Identities=21% Similarity=0.335 Sum_probs=44.3 Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCC-CHHHHHHHHHCCCCEEEECCCCC Q ss_conf 99976994799807874336688978988742026868999648876-23455555417982799615447 Q gi|254780901|r 115 FLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGST-SYDALQYATNQGIDVIVIDHHQV 184 (600) Q Consensus 115 ~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~-~~e~i~~a~~~GidvIVtDHH~~ 184 (600) +.+.+|.++.++.+...+ .--..+.++.+...+++.||..=.... ..+.++.|.+.|+.|+..|-..+ T Consensus 25 aa~~~g~~l~~~~~~~~d--~~~q~~~i~~~i~~~vDgIii~~~~~~~~~~~~~~a~~~gipvv~~d~~~~ 93 (313) T 2h3h_A 25 AGKALGVDTKFFVPQKED--INAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTDSP 93 (313) T ss_dssp HHHHHTCEEEEECCSSSC--HHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCT T ss_pred HHHHCCCEEEEEECCCCC--HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCC T ss_conf 999809979999799999--999999999999759999999776221125999999966994899446446 No 43 >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* Probab=74.22 E-value=4.1 Score=19.15 Aligned_cols=79 Identities=20% Similarity=0.366 Sum_probs=43.5 Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCC----------------CCEEEEE Q ss_conf 979999407886152899999999976994799807874336688978988742026----------------8689996 Q gi|254780901|r 93 EKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEG----------------AQLIITV 156 (600) Q Consensus 93 ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g----------------~~LiItv 156 (600) ++|+|+| + |..++++.. +|++-|.++..+ ||..+++.++++++.| +++||.+ T Consensus 34 k~I~IIG---l-G~mG~siA~-~L~~~g~~~~V~-------g~D~~~~~~~~a~~~g~id~~~~~~~~~~~~~~dlIila 101 (314) T 3ggo_A 34 QNVLIVG---V-GFMGGSFAK-SLRRSGFKGKIY-------GYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS 101 (314) T ss_dssp SEEEEES---C-SHHHHHHHH-HHHHTTCCSEEE-------EECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEEC T ss_pred CEEEEEE---E-CHHHHHHHH-HHHCCCCCCEEE-------EEECCHHHHHHHHHCCCCCCCCCCHHHHHCCCCCEEEEC T ss_conf 7799982---0-889999999-998069998899-------997999999999986997511489888725688889983 Q ss_pred CCCCCCHHH-HHHH-HHCCCCEEEECCCCC Q ss_conf 488762345-5555-417982799615447 Q gi|254780901|r 157 DCGSTSYDA-LQYA-TNQGIDVIVIDHHQV 184 (600) Q Consensus 157 D~Gi~~~e~-i~~a-~~~GidvIVtDHH~~ 184 (600) .=+....+ ++.. ..+.-+.||+|-=-. T Consensus 102 -vP~~~~~~vl~~l~~~l~~~~iI~Dv~Sv 130 (314) T 3ggo_A 102 -SPVRTFREIAKKLSYILSEDATVTDQGSV 130 (314) T ss_dssp -SCGGGHHHHHHHHHHHSCTTCEEEECCSC T ss_pred -CCHHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf -55043210455431110345544564554 No 44 >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 Probab=73.74 E-value=4.1 Score=19.12 Aligned_cols=70 Identities=10% Similarity=0.100 Sum_probs=37.8 Q ss_pred HHHHHHHCCCCEEEEE-CCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCC Q ss_conf 9999997699479980-7874336688978988742026868999648876234555554179827996154 Q gi|254780901|r 112 MMRFLSHCSVNANMYI-PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 (600) Q Consensus 112 l~~~L~~~g~~v~~~I-P~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH 182 (600) +.+.+...|++--+.+ -++...++..+...++++... +.+-++++.|+.+.+.++.+-+.|.+-|++.-. T Consensus 38 ~a~~~~~~g~d~i~ivDl~~~~~~~~~~~~~i~~i~~~-~~~pi~~gGGirs~~~~~~~l~~G~~rvii~s~ 108 (253) T 1h5y_A 38 MAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEA-VSIPVLVGGGVRSLEDATTLFRAGADKVSVNTA 108 (253) T ss_dssp HHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHHHHH-CSSCEEEESSCCSHHHHHHHHHHTCSEEEESHH T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHCCCCEEECCCC T ss_conf 99999986999899985105523475289999999974-498569835511177677888648988953860 No 45 >2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP family), structural genomics; 2.40A {Thermotoga maritima MSB8} SCOP: c.6.3.1 Probab=73.73 E-value=1.7 Score=22.21 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=21.2 Q ss_pred CCCCCCHHHHHHHHHCCCCEE-EECCCCCCC Q ss_conf 488762345555541798279-961544765 Q gi|254780901|r 157 DCGSTSYDALQYATNQGIDVI-VIDHHQVKS 186 (600) Q Consensus 157 D~Gi~~~e~i~~a~~~GidvI-VtDHH~~~~ 186 (600) |+-.+-.+-++.|+++|+|+| ||||..... T Consensus 32 Dg~~~~~e~v~~A~~~Gld~iaiTDH~~~~~ 62 (255) T 2anu_A 32 DGHLPLGEVVDLFGKHGVDVVSITDHIVDRR 62 (255) T ss_dssp TCSSCHHHHHHHHHHTTCSEEEEEEEEECHH T ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCCCHH T ss_conf 8989999999999985997899934786132 No 46 >2d59_A Hypothetical protein PH1109; COA binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.65A {Pyrococcus horikoshii OT3} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* Probab=73.68 E-value=4.2 Score=19.05 Aligned_cols=94 Identities=12% Similarity=0.134 Sum_probs=61.0 Q ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC-HHHHHHHHHCCCCEEEEECCCCC Q ss_conf 99999997799799994078861528999999999769947998078743366889-78988742026868999648876 Q gi|254780901|r 83 RRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN-PSLMEKFINEGAQLIITVDCGST 161 (600) Q Consensus 83 ~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~-~~~i~~~~~~g~~LiItvD~Gi~ 161 (600) +.+.+.+.+-++|+|.|--+--+-.|..++ +.|...|.++...=|.+ ++=-|+. -..+.++ .+.+++++.+-.... T Consensus 13 ~~l~~~L~~~ksIAVVGaS~~~~k~g~~v~-~~L~~~g~~V~pVnP~~-~~i~G~~~y~sl~di-~~~vD~v~v~~p~~~ 89 (144) T 2d59_A 13 EDIREILTRYKKIALVGASPKPERDANIVM-KYLLEHGYDVYPVNPKY-EEVLGRKCYPSVLDI-PDKIEVVDLFVKPKL 89 (144) T ss_dssp HHHHHHHHHCCEEEEETCCSCTTSHHHHHH-HHHHHTTCEEEEECTTC-SEETTEECBSSGGGC-SSCCSEEEECSCHHH T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCHHHHH-HHHHHCCCEEEEECCCC-EEECCEECCCCHHHC-CCCCCEEEEECCHHH T ss_conf 999999877894999863699997299999-99997799799989877-067786335601203-788737999728888 Q ss_pred CHHHHHHHHHCCCCEEEE Q ss_conf 234555554179827996 Q gi|254780901|r 162 SYDALQYATNQGIDVIVI 179 (600) Q Consensus 162 ~~e~i~~a~~~GidvIVt 179 (600) ..+.++.+.++|+..++. T Consensus 90 v~~il~~~~~~g~k~v~~ 107 (144) T 2d59_A 90 TMEYVEQAIKKGAKVVWF 107 (144) T ss_dssp HHHHHHHHHHHTCSEEEE T ss_pred HHHHHHHHHHCCCCEEEE T ss_conf 899999999759999998 No 47 >3l6u_A ABC-type sugar transport system periplasmic component; structural genomics, nysgrc, target 11006S, PSI-2, protein structure initiative; 1.90A {Exiguobacterium sibiricum} Probab=73.62 E-value=4.2 Score=19.04 Aligned_cols=70 Identities=14% Similarity=0.068 Sum_probs=46.7 Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCC-CHHHHHHHHHCCCCEEEECCCCCC Q ss_conf 9999976994799807874336688978988742026868999648876-234555554179827996154476 Q gi|254780901|r 113 MRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGST-SYDALQYATNQGIDVIVIDHHQVK 185 (600) Q Consensus 113 ~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~-~~e~i~~a~~~GidvIVtDHH~~~ 185 (600) .+.++..|.++.....+.-.+ ...+.++.+...+++-||..=+... ..+.++.+++.||.||..|-..++ T Consensus 31 ~~~a~~~Gy~~~~~~~~~~~~---~~~~~i~~li~~~~DgIii~~~~~~~~~~~l~~~~~~giPVV~~~~~~~~ 101 (293) T 3l6u_A 31 KAEAKANKYEALVATSQNSRI---SEREQILEFVHLKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRMIRS 101 (293) T ss_dssp HHHHHHTTCEEEEEECSSCHH---HHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSCCCC T ss_pred HHHHHHCCCEEEEEECCCCHH---HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEECCCCCCC T ss_conf 999998699899997999989---99999999997699999994332201389999999869979971777787 No 48 >3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, alpha chain; structural genomics, PSI-2, protein structure initiative; 1.90A {Thermoplasma acidophilum} Probab=73.61 E-value=4.2 Score=19.04 Aligned_cols=67 Identities=21% Similarity=0.376 Sum_probs=44.4 Q ss_pred CCCCEEEEECCCCC------HHHHHHHH--HHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 79979999407886------15289999--9999976994799807874336688978988742026868999648876 Q gi|254780901|r 91 NSEKIMIFGDYDVD------GAASVALM--MRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGST 161 (600) Q Consensus 91 ~~ekI~I~gDyD~D------Gitstail--~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~ 161 (600) |.++..+|||-|+| |.+....+ .+.|+.-|.++.+.-+..+. -+..+.+.++... ++.+|+|+++.+ T Consensus 2 n~~k~~l~g~e~adi~iv~~Gs~~~~~~eA~~~L~~~gi~~~vi~~~~~~---P~~~~~l~~~~~~-~~~vivvE~n~~ 76 (118) T 3ju3_A 2 NAEKAVLIGEKEADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFS---PFPTEFVKNVLSS-ANLVIDVESNYT 76 (118) T ss_dssp -CCSEEEESCSSCSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSSC---SCCHHHHHHHHTT-CSCCCCCCCCCC T ss_pred CCCCCEEECCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCEECC---CCCHHHHHHHHHC-CCEEEEEECCCC T ss_conf 82333785789999999982772999999999998749973313100157---6888999999955-796999919972 No 49 >1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ... Probab=73.18 E-value=4.3 Score=18.96 Aligned_cols=12 Identities=17% Similarity=0.249 Sum_probs=6.3 Q ss_pred HHCCCCEEEECC Q ss_conf 417982799615 Q gi|254780901|r 170 TNQGIDVIVIDH 181 (600) Q Consensus 170 ~~~GidvIVtDH 181 (600) -+.-.|+||.-| T Consensus 122 ls~y~D~iviR~ 133 (359) T 1zq6_A 122 LGRYVDLIGVRA 133 (359) T ss_dssp HHHHCSEEEEEC T ss_pred HHCCCCEEEEEC T ss_conf 752487899963 No 50 >1t71_A Phosphatase, conserved; crystal, X-RAY crystallography, structural genomics, berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9 Probab=72.97 E-value=4.4 Score=18.93 Aligned_cols=76 Identities=20% Similarity=0.198 Sum_probs=52.6 Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHC----CCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHH Q ss_conf 79979999407886152899999999976----99479980787433668897898874202686899964887623455 Q gi|254780901|r 91 NSEKIMIFGDYDVDGAASVALMMRFLSHC----SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDAL 166 (600) Q Consensus 91 ~~ekI~I~gDyD~DGitstail~~~L~~~----g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i 166 (600) +.=||+..| |+=|-++--.+.+.|..+ ++++...=-.-...|+|++++..+++.+.|++.| |.-|=+=+..++ T Consensus 3 ~~MkiLfiG--DIvG~~Gr~~v~~~Lp~l~~~~~iDfvIaNgENaa~G~Git~~~~~~l~~~GvDvi-T~GNH~wd~kei 79 (281) T 1t71_A 3 NSIKFIFLG--DVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAGVNYI-TMGNHTWFQKLD 79 (281) T ss_dssp CCCEEEEEC--EEBHHHHHHHHHTTHHHHHHHHTCSEEEEECTBTTTTSSCCHHHHHHHHHHTCCEE-ECCTTTTCCGGG T ss_pred CCCEEEEEE--ECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCEE-ECCCCCCCCHHH T ss_conf 643699998--06888899999998099999828999998985367896989999999997199899-247210256357 Q ss_pred -HHH Q ss_conf -555 Q gi|254780901|r 167 -QYA 169 (600) Q Consensus 167 -~~a 169 (600) .+. T Consensus 80 ~~~i 83 (281) T 1t71_A 80 LAVV 83 (281) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9988 No 51 >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, amino-acid biosynthesis cobalamin, precorrin, novel fold; 2.10A {Thermotoga maritima} Probab=72.67 E-value=4.4 Score=18.88 Aligned_cols=68 Identities=13% Similarity=0.037 Sum_probs=51.9 Q ss_pred HHHHHHCCCC-EEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECC Q ss_conf 9999976994-79980787433668897898874202686899964887623455555417982799615 Q gi|254780901|r 113 MRFLSHCSVN-ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 (600) Q Consensus 113 ~~~L~~~g~~-v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDH 181 (600) .+.+...|++ +.+.-=++-..+-|.|.+.++++.+. +.+=+++..|+.+.+.++.+-..|.|-||+-- T Consensus 36 ~~~~~~~gadei~i~did~~~~~~g~n~~lI~~I~~~-~~iPl~vGGGIr~~ed~~~ll~~GadkVii~s 104 (266) T 2w6r_A 36 VVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPL-TTLPIIASGGAGKMEHFLEAFLAGADKALAAS 104 (266) T ss_dssp HHHHHHHTCSEEEEEETTTSSCSSCCCHHHHHHHGGG-CCSCEEEESCCCSTHHHHHHHHHTCSEEECCC T ss_pred HHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHE-ECCEEEECCCCCCCCCHHHHHHHHHHHEEECC T ss_conf 9999987999899999608755788667776434532-48549976772120210033322000001133 No 52 >1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A Probab=71.81 E-value=4.6 Score=18.74 Aligned_cols=100 Identities=19% Similarity=0.309 Sum_probs=55.4 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH--HHHHHHCCCCE---E-EEECCC------CCCCCCCCH---H Q ss_conf 4879999999999977997999940788615289999--99999769947---9-980787------433668897---8 Q gi|254780901|r 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALM--MRFLSHCSVNA---N-MYIPDR------IVDGYGPNP---S 140 (600) Q Consensus 76 ~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail--~~~L~~~g~~v---~-~~IP~R------~~eGYGl~~---~ 140 (600) ..++++++.|.+++.++.||.++| .-|-.++|-. .++...+..+. . .....- +.-.||... + T Consensus 29 ~~I~~aa~~i~~~~~~~~kI~~~G---nGgSaa~A~h~a~dl~~~~~~~~~~l~~i~l~~~~~~~ta~~Nd~g~~~~f~~ 105 (199) T 1x92_A 29 PYIEQASLVMVNALLNEGKILSCG---NGGSAGDAQHFSSELLNRFERERPSLPAVALTTDSSTITSIANDYSYNEVFSK 105 (199) T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEC---STHHHHHHHHHHHHHHTCSSSCCCCCCEEETTCCHHHHHHHHHHTCGGGTTHH T ss_pred HHHHHHHHHHHHHHHCCCEEEEEE---CCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHCCCCCCHHHHHHH T ss_conf 999999999999998799899997---86627779999999733000254444357756881344320267669999999 Q ss_pred HHHHHHHCCCCEEEEEC-CCCC--CHHHHHHHHHCCCCEEEE Q ss_conf 98874202686899964-8876--234555554179827996 Q gi|254780901|r 141 LMEKFINEGAQLIITVD-CGST--SYDALQYATNQGIDVIVI 179 (600) Q Consensus 141 ~i~~~~~~g~~LiItvD-~Gi~--~~e~i~~a~~~GidvIVt 179 (600) -++..... -+++|... .|-+ -.+++++|+++|+.||.. T Consensus 106 ql~~~~~~-gDvli~iS~SG~S~nii~a~~~Ak~~g~~~i~l 146 (199) T 1x92_A 106 QIRALGQP-GDVLLAISTSGNSANVIQAIQAAHDREMLVVAL 146 (199) T ss_dssp HHHHHCCT-TCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEE T ss_pred HHHHCCCC-CCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEE T ss_conf 99963789-988999847999945789999999869969999 No 53 >1rdu_A Conserved hypothetical protein; structure determination, structural proteomics, atnos, candid, joint center for structural genomics (JCSG); NMR {Thermotoga maritima} SCOP: c.55.5.1 Probab=71.61 E-value=3.2 Score=19.98 Aligned_cols=53 Identities=17% Similarity=0.500 Sum_probs=38.1 Q ss_pred EECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECC Q ss_conf 80787433668897898874202686899964887623455555417982799615 Q gi|254780901|r 126 YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 (600) Q Consensus 126 ~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDH 181 (600) .+.+|...++|-.....+.+...|++.+|+-..|-.+. ..+.+.||.|+.++. T Consensus 39 ~ie~~~~~~~~~g~~~~~~l~~~gv~~vi~~~iG~~a~---~~L~~~GI~v~~~~~ 91 (116) T 1rdu_A 39 VVENTIADAHGTGPKVVQSLVSKGVEYLIASNVGRNAF---ETLKAAGVKVYRFEG 91 (116) T ss_dssp EEECCCCSCCCSSCSHHHHHHTTTCCEEECSSCCSSCH---HHHHTTTCEEECCCS T ss_pred EEECCCCCCCCCCHHHHHHHHHCCCCEEEECCCCHHHH---HHHHHCCCEEEECCC T ss_conf 99766888765431799999987998999888798899---999988999997399 No 54 >2otd_A Glycerophosphodiester phosphodiesterase; structural genomics, MCSG, PSI-2, protein structure initiative, midwest center for structural genomics; 2.60A {Shigella flexneri} Probab=71.43 E-value=4.7 Score=18.68 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=20.7 Q ss_pred CCHHHHHHHHHCCCCEEEECCCCCCCCCC Q ss_conf 62345555541798279961544765556 Q gi|254780901|r 161 TSYDALQYATNQGIDVIVIDHHQVKSEEI 189 (600) Q Consensus 161 ~~~e~i~~a~~~GidvIVtDHH~~~~~~p 189 (600) ++.++...|.+.|.+.|=+|=+...+..| T Consensus 22 NT~~a~~~a~~~G~~~iE~Dv~~TkDg~l 50 (247) T 2otd_A 22 NTLAAIDVGAKYGHKMIEFDAKLSKDGEI 50 (247) T ss_dssp SSHHHHHHHHHTTCSEEEEEEEECTTCCE T ss_pred CHHHHHHHHHHCCCCEEEEEEEEECCCCE T ss_conf 15999999998498989997789228978 No 55 >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Probab=71.24 E-value=3.9 Score=19.33 Aligned_cols=32 Identities=9% Similarity=0.132 Sum_probs=16.7 Q ss_pred CCCCHHHHHHHHHHHHHHHCCHHHCCCCEEEEEEECHHH Q ss_conf 222158899999999986226443377147604434689 Q gi|254780901|r 449 ERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASA 487 (600) Q Consensus 449 ~~~~l~~f~~~l~~~~~~~~~~~~~~~~l~iD~el~~~~ 487 (600) ..++.++|.+.|.+..+. ..| ..+|..++.++ T Consensus 608 ~V~~~~eL~~al~~al~~------~gp-~lIeV~vd~~~ 639 (677) T 1t9b_A 608 RVKKQEELDAKLKEFVST------KGP-VLLEVEVDKKV 639 (677) T ss_dssp EECSHHHHHHHHHHHHHC------SSC-EEEEEEBCSSC T ss_pred EECCHHHHHHHHHHHHHC------CCC-EEEEEEECCCC T ss_conf 969999999999999858------991-99999978988 No 56 >2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A Probab=70.56 E-value=2.2 Score=21.22 Aligned_cols=27 Identities=33% Similarity=0.461 Sum_probs=21.9 Q ss_pred ECCCCCCHHH----HHHHHHCCCCEE-EECCC Q ss_conf 6488762345----555541798279-96154 Q gi|254780901|r 156 VDCGSTSYDA----LQYATNQGIDVI-VIDHH 182 (600) Q Consensus 156 vD~Gi~~~e~----i~~a~~~GidvI-VtDHH 182 (600) +|.|..+.++ ++.|.++|++.| +|||. T Consensus 16 ~~DG~~s~ee~~~~~~~A~~~G~~~i~iTDH~ 47 (247) T 2wje_A 16 VDDGPKSREESKALLAESYRQGVRTIVSTSHR 47 (247) T ss_dssp SSSSCSSHHHHHHHHHHHHHTTEEEEECCCEE T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC T ss_conf 77898999999999999998799999989899 No 57 >3ff4_A Uncharacterized protein; structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; 2.10A {Cytophaga hutchinsonii atcc 33406} Probab=70.31 E-value=4.9 Score=18.50 Aligned_cols=84 Identities=11% Similarity=0.024 Sum_probs=42.3 Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCH-HHHHHHHHCCCCEEEEECCCCCCHHHHHHHH Q ss_conf 997999940788615289999999997699479980787433668897-8988742026868999648876234555554 Q gi|254780901|r 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP-SLMEKFINEGAQLIITVDCGSTSYDALQYAT 170 (600) Q Consensus 92 ~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~-~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~ 170 (600) =++|+|.|--+-.+-.| ..+.+.|...|.++...=|.. .+-.|+.. ..++ . ...+++++.+-......+.++.|. T Consensus 4 ~K~iaVvGaS~~~~k~g-~~v~~~L~~~G~~V~pVnP~~-~~I~G~~~~~sl~-~-p~~iD~v~i~~p~~~~~~~v~e~~ 79 (122) T 3ff4_A 4 MKKTLILGATPETNRYA-YLAAERLKSHGHEFIPVGRKK-GEVLGKTIINERP-V-IEGVDTVTLYINPQNQLSEYNYIL 79 (122) T ss_dssp CCCEEEETCCSCTTSHH-HHHHHHHHHHTCCEEEESSSC-SEETTEECBCSCC-C-CTTCCEEEECSCHHHHGGGHHHHH T ss_pred CCEEEEEEECCCCCCHH-HHHHHHHHHCCCEEEEECCCC-CCCCEEEEEECCC-C-CCCCCEEEEEECHHHHHHHHHHHH T ss_conf 66499996669999829-999999997899899988877-6100058997455-6-788757999958899899999998 Q ss_pred HCCCCEEEE Q ss_conf 179827996 Q gi|254780901|r 171 NQGIDVIVI 179 (600) Q Consensus 171 ~~GidvIVt 179 (600) ++|+..++. T Consensus 80 ~~g~k~vw~ 88 (122) T 3ff4_A 80 SLKPKRVIF 88 (122) T ss_dssp HHCCSEEEE T ss_pred HCCCCEEEE T ss_conf 539999999 No 58 >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} Probab=69.35 E-value=5.2 Score=18.36 Aligned_cols=93 Identities=14% Similarity=0.170 Sum_probs=55.4 Q ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCCC-CHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 99999779979999407886152899999999976994799807874-336688-9789887420268689996488762 Q gi|254780901|r 85 IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI-VDGYGP-NPSLMEKFINEGAQLIITVDCGSTS 162 (600) Q Consensus 85 i~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~-~eGYGl-~~~~i~~~~~~g~~LiItvD~Gi~~ 162 (600) |.+.+.+-++|.|.|--+--|-.+- .+.+.|...|.++..+-|++. .+--|+ .-..++++ ...+++++.+-..... T Consensus 6 i~~~L~~pksIAVVGaS~~~~k~g~-~v~~~L~~~g~~~~~v~p~~~~~~i~G~~~y~sl~~i-p~~vDlvvi~~p~~~v 83 (145) T 2duw_A 6 IAGILTSTRTIALVGASDKPDRPSY-RVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADV-PEKVDMVDVFRNSEAA 83 (145) T ss_dssp HHHHHHHCCCEEEESCCSCTTSHHH-HHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTC-SSCCSEEECCSCSTHH T ss_pred HHHHHHCCCEEEEECCCCCCCCCHH-HHHHHHHHCCCCEEEECCCCCCCCCCCEEEECCHHHC-CCCCEEEEEECCHHHH T ss_conf 9999867895999820599998399-9999999679944887887544321881575246458-9986499996373258 Q ss_pred HHHHHHHHHCCCCEEEE Q ss_conf 34555554179827996 Q gi|254780901|r 163 YDALQYATNQGIDVIVI 179 (600) Q Consensus 163 ~e~i~~a~~~GidvIVt 179 (600) .+.++.+.+.|+..+.. T Consensus 84 ~~~~~~~~~~g~k~v~~ 100 (145) T 2duw_A 84 WGVAQEAIAIGAKTLWL 100 (145) T ss_dssp HHHHHHHHHHTCCEEEC T ss_pred HHHHHHHHHCCCCEEEE T ss_conf 99999999749987873 No 59 >1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A* Probab=69.31 E-value=5.2 Score=18.35 Aligned_cols=73 Identities=15% Similarity=0.137 Sum_probs=44.8 Q ss_pred HHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCC-CCHHHHHHHHHCCCCEEEECCCCCCCC Q ss_conf 99997699479980787433668897898874202686899964887-623455555417982799615447655 Q gi|254780901|r 114 RFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGS-TSYDALQYATNQGIDVIVIDHHQVKSE 187 (600) Q Consensus 114 ~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi-~~~e~i~~a~~~GidvIVtDHH~~~~~ 187 (600) ++.+.+|.++..+.++.-.+ .--..+.++.+...+++.||.+=... ...+.++.+.+.||-|+..|.+..+.. T Consensus 25 ~~a~~~G~~~~~~~~~~~~d-~~~q~~~i~~~i~~~~Dgii~~~~~~~~~~~~~~~~~~~~Ipvv~~~~~~~~~~ 98 (288) T 1gud_A 25 DEAKTLGVSVDIFASPSEGD-FQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMDN 98 (288) T ss_dssp HHHHHHTCCEEEEECSSTTC-HHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHHHHTTCEEEEESSCCCHHH T ss_pred HHHHHCCCEEEEEECCCCCC-HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCCC T ss_conf 99997499799997589899-999999999999659998997335641117999999858984999357777543 No 60 >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Probab=69.16 E-value=5.2 Score=18.33 Aligned_cols=81 Identities=14% Similarity=0.311 Sum_probs=50.6 Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHC----CCCEEEEECCCCC----CHHH Q ss_conf 7999940788615289999999997699479980787433668897898874202----6868999648876----2345 Q gi|254780901|r 94 KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE----GAQLIITVDCGST----SYDA 165 (600) Q Consensus 94 kI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~----g~~LiItvD~Gi~----~~e~ 165 (600) .|+.+|=.-+-=.|++|=|..+++.-|.+|-..--+-+ -..+++++... ++. ++....+.. +.++ T Consensus 102 vi~~vG~~G~GKTTT~aKLA~~~~~~g~kv~lva~Dt~------R~aA~eQL~~~a~~~~v~-v~~~~~~~dp~~i~~~a 174 (443) T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW------RPGAYHQLRQLLDRYHIE-VFGNPQEKDAIKLAKEG 174 (443) T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS------STHHHHHHHHHHGGGTCE-EECCTTCCCHHHHHHHH T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHHHHHHCCCCC-EECCCCCCCHHHHHHHH T ss_conf 89996678897232799999999976994246531455------766999999985124565-00676433667899999 Q ss_pred HHHHHHCCCCEEEECC Q ss_conf 5555417982799615 Q gi|254780901|r 166 LQYATNQGIDVIVIDH 181 (600) Q Consensus 166 i~~a~~~GidvIVtDH 181 (600) +++++..|.|+|++|- T Consensus 175 ~~~a~~~~~D~viIDT 190 (443) T 3dm5_A 175 VDYFKSKGVDIIIVDT 190 (443) T ss_dssp HHHHHHTTCSEEEEEC T ss_pred HHHHHHCCCCEEEEEC T ss_conf 9999866999899878 No 61 >1ecf_A Glutamine phosphoribosylpyrophosphate amidotransferase; purine biosynthesis, glycosyltransferase, glutamine amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A* Probab=68.62 E-value=5.3 Score=18.25 Aligned_cols=21 Identities=19% Similarity=0.052 Sum_probs=10.9 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCC Q ss_conf 99999999976994799807874336688 Q gi|254780901|r 109 VALMMRFLSHCSVNANMYIPDRIVDGYGP 137 (600) Q Consensus 109 tail~~~L~~~g~~v~~~IP~R~~eGYGl 137 (600) ..+++..|..+ -||=+|+.|+ T Consensus 13 ~~~l~~gL~~L--------QHRGqdsaGI 33 (504) T 1ecf_A 13 NQSIYDALTVL--------QHRGQDAAGI 33 (504) T ss_dssp HHHHHHHHHHT--------GGGCCSEEEE T ss_pred HHHHHHHHHHH--------HCCCCCCCEE T ss_conf 99999999886--------1365102379 No 62 >2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824} Probab=68.51 E-value=5.3 Score=18.23 Aligned_cols=130 Identities=14% Similarity=0.140 Sum_probs=66.0 Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHCCCCHHHCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCH Q ss_conf 98899999988199999999999678897898866196677718995561487999999999997799799994078861 Q gi|254780901|r 26 GINRALAITQKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105 (600) Q Consensus 26 ~~~~~~~l~~~~~~~~~~a~iL~~Rgi~~~~~~~fL~p~l~~l~~dP~~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DG 105 (600) +......+++.+. . -+.++++||-+.+-++..++--.-++..+.| |+=+| +.+|.+.+++|.++|-... T Consensus 37 ~l~~~~~iA~~l~-~--~~DVIISRGgTa~~Ir~~~~iPVVeI~vs~~---Dil~a---l~~a~~~~~kiavvgf~~~-- 105 (196) T 2q5c_A 37 SLTRASKIAFGLQ-D--EVDAIISRGATSDYIKKSVSIPSISIKVTRF---DTMRA---VYNAKRFGNELALIAYKHS-- 105 (196) T ss_dssp CHHHHHHHHHHHT-T--TCSEEEEEHHHHHHHHTTCSSCEEEECCCHH---HHHHH---HHHHGGGCSEEEEEEESSC-- T ss_pred EHHHHHHHHHHHH-C--CCCEEEECCHHHHHHHHHCCCCEEEECCCHH---HHHHH---HHHHHHHCCCEEEEECCCC-- T ss_conf 6999999999754-3--9879998965899999828997799807887---99999---9999975897899967850-- Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEE Q ss_conf 52899999999976994799807874336688978988742026868999648876234555554179827996 Q gi|254780901|r 106 AASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVI 179 (600) Q Consensus 106 itstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVt 179 (600) +.+...+.. .++.++..|..+...| -...+++++++|++.+| | +.-.++.|++.|+..+.+ T Consensus 106 ~~~~~~i~~---ll~~~i~~~~~~~~~e----~~~~i~~l~~~G~~vvV----G--~~~~~~~A~~~Gl~~ili 166 (196) T 2q5c_A 106 IVDKHEIEA---MLGVKIKEFLFSSEDE----ITTLISKVKTENIKIVV----S--GKTVTDEAIKQGLYGETI 166 (196) T ss_dssp SSCHHHHHH---HHTCEEEEEEECSGGG----HHHHHHHHHHTTCCEEE----E--CHHHHHHHHHTTCEEEEC T ss_pred CHHHHHHHH---HHCCCEEEEEECCHHH----HHHHHHHHHHCCCCEEE----C--CHHHHHHHHHCCCCEEEE T ss_conf 158999999---8599559999668899----99999999986998999----9--879999999859978999 No 63 >2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics; HET: EPE; 2.20A {Bacillus cereus atcc 14579} SCOP: c.135.1.1 Probab=68.36 E-value=3.9 Score=19.34 Aligned_cols=30 Identities=27% Similarity=0.537 Sum_probs=23.1 Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCC Q ss_conf 8689996488762345555541798279961544 Q gi|254780901|r 150 AQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 (600) Q Consensus 150 ~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~ 183 (600) -++++|+|. ..+-+++|.+.|.|+||| ||. T Consensus 65 ~~IlvalD~---T~evi~eAi~~gadlIIs-HHP 94 (397) T 2gx8_A 65 RHVLIALDV---TEEVVDEAIQLGANVIIA-HHP 94 (397) T ss_dssp CEEEEESSC---CHHHHHHHHHHTCCEEEE-SSC T ss_pred CEEEEEECC---CHHHHHHHHHCCCCEEEE-CCC T ss_conf 889999759---999999999779989997-898 No 64 >1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, synthetic gene, isomerase; 1.60A {Candida albicans SC5314} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A* Probab=68.29 E-value=1.4 Score=22.79 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=46.5 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCH---------HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCC Q ss_conf 99999999997799799994078861---------528999999999769947998078743366889789887420268 Q gi|254780901|r 80 KAARRIVQAIYNSEKIMIFGDYDVDG---------AASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGA 150 (600) Q Consensus 80 ~A~~ri~~ai~~~ekI~I~gDyD~DG---------itstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~ 150 (600) ..++...+++++++.|+|+-|.|=.+ ......+....+.-+.-+++-++...-+-.||..-.-..-...+. T Consensus 6 ~~ie~ai~alk~G~~Viv~Dd~~RE~EgDlv~~Ae~~t~e~i~fm~~~~~Glic~a~~~~~~~~L~lp~m~~~~~~~~~~ 85 (204) T 1tks_A 6 TPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSEERANQLELPPMLANRSDRHGT 85 (204) T ss_dssp CCHHHHHHHHHTTCCEEEESSSCTTCBCEEEEEGGGCCHHHHHHHHHTBCSCCEEEEEHHHHHHTTCCBSCC------CC T ss_pred CCHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEEECHHHHHHCCCCCCCCCCCCCCCC T ss_conf 45999999998899699986899877405897868699999999999589779997488999226898645456787888 Q ss_pred CEEEEEC------CCCCCHHHHHHHHH Q ss_conf 6899964------88762345555541 Q gi|254780901|r 151 QLIITVD------CGSTSYDALQYATN 171 (600) Q Consensus 151 ~LiItvD------~Gi~~~e~i~~a~~ 171 (600) ...++|| .|||+.+...-++. T Consensus 86 ~f~v~vd~~~g~~TGISa~DRa~Tir~ 112 (204) T 1tks_A 86 AYTITCDFAEGTTTGISAHDRALTTRS 112 (204) T ss_dssp CBBCCEEESTTCSSSCSHHHHHHHHHH T ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHH T ss_conf 535442166788899789999999999 No 65 >3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A Probab=66.99 E-value=5.7 Score=18.01 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=28.0 Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCC Q ss_conf 9887420268689996488762345555541798279961544 Q gi|254780901|r 141 LMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 (600) Q Consensus 141 ~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~ 183 (600) ..+++.++++..||..-|...+......+.+.++..|-+.-.. T Consensus 61 ~~~~L~~~~v~~iig~~~~~~~~~~~~~a~~~~~p~i~~~~~~ 103 (356) T 3ipc_A 61 VANKFVADGVKFVVGHANSGVSIPASEVYAENGILEITPAATN 103 (356) T ss_dssp HHHHHHHTTCCEEEECSSHHHHHHHHHHHHTTTCEEEESSCCC T ss_pred HHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCEEEECCCCC T ss_conf 9999997799099954666889999999863254065125567 No 66 >1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics, PSI; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3 Probab=66.46 E-value=5.7 Score=18.04 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=19.2 Q ss_pred CCHHHHHHHHHCCCCEEEECCCCCCCCC Q ss_conf 6234555554179827996154476555 Q gi|254780901|r 161 TSYDALQYATNQGIDVIVIDHHQVKSEE 188 (600) Q Consensus 161 ~~~e~i~~a~~~GidvIVtDHH~~~~~~ 188 (600) +..++.+.|.+.|.|.|=+|=|.-.+.. T Consensus 17 NTl~af~~A~~~G~d~iE~DV~~TkDg~ 44 (248) T 1zcc_A 17 NTFAAADLALQQGADYIELDVRESADGV 44 (248) T ss_dssp SSHHHHHHHHHTTCSEEEEEEEECTTCC T ss_pred HHHHHHHHHHHCCCCEEEEEEEEECCCC T ss_conf 2799999999859899999777905994 No 67 >3etn_A Putative phosphosugar isomerase involved in capsule formation; YP_209877.1, structural genomics; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343} Probab=66.39 E-value=5.8 Score=17.93 Aligned_cols=95 Identities=21% Similarity=0.324 Sum_probs=52.2 Q ss_pred CCHHHHHHHHHHHHHCCC-CEEEEECCCCCHHHHHHHH--HHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCE Q ss_conf 487999999999997799-7999940788615289999--9999976994799807874336688978988742026868 Q gi|254780901|r 76 TDCDKAARRIVQAIYNSE-KIMIFGDYDVDGAASVALM--MRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQL 152 (600) Q Consensus 76 ~dm~~A~~ri~~ai~~~e-kI~I~gDyD~DGitstail--~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~L 152 (600) .+.+++++.|.+++.+.. +|.+|| + |-++.+-. ..-|.++|..+.++-+.-... + ....+ .. -++ T Consensus 42 ~~~e~~v~~i~~~i~~~~grI~~~G---v-G~S~~vA~~~~~kl~~lG~~~~~~~d~~~~~--~----~~~~~-~~-~Dv 109 (220) T 3etn_A 42 DAYEKAVELIVEQIHRKKGKLVTSG---M-GKAGQIAMNIATTFCSTGIPSVFLHPSEAQH--G----DLGIL-QE-NDL 109 (220) T ss_dssp THHHHHHHHHHHHTTTTCCCEEEEC---S-HHHHHHHHHHHHHHHHTTCCEEECCTTGGGB--T----GGGGC-CT-TCE T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEE---E-CHHHHHHHHHHHHHHHCCCCCEECCCHHHHH--H----HHHCC-CC-CCE T ss_conf 5799999999999971799699997---0-4799999999999998399405278177888--8----85158-88-888 Q ss_pred EEEECCCCCCH---HHHHHHH--HCCCCEEE-ECCC Q ss_conf 99964887623---4555554--17982799-6154 Q gi|254780901|r 153 IITVDCGSTSY---DALQYAT--NQGIDVIV-IDHH 182 (600) Q Consensus 153 iItvD~Gi~~~---e~i~~a~--~~GidvIV-tDHH 182 (600) +|..-..=... +.++.|+ +.|+.+|. |-.. T Consensus 110 lI~iS~SG~T~evi~~~~~ak~~~~~~~vI~IT~~~ 145 (220) T 3etn_A 110 LLLISNSGKTREIVELTQLAHNLNPGLKFIVITGNP 145 (220) T ss_dssp EEEECSSSCCHHHHHHHHHHHHHCTTCEEEEEESCT T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECC T ss_conf 999828998665888899987404687158886058 No 68 >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Probab=66.05 E-value=5.9 Score=17.88 Aligned_cols=80 Identities=10% Similarity=0.068 Sum_probs=45.9 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCC--CCCCCCCCHHHHHHHHHCCCCEEEEE Q ss_conf 9999999999977997999940788615289999999997699479980787--43366889789887420268689996 Q gi|254780901|r 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR--IVDGYGPNPSLMEKFINEGAQLIITV 156 (600) Q Consensus 79 ~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R--~~eGYGl~~~~i~~~~~~g~~LiItv 156 (600) +.+++++.+.+.+.++.+|+....+..--+...+.++.+.+|+.+..-.+.+ +.+.+.++-.......-...++++.+ T Consensus 200 ~~~v~~~~~~l~~akrPvii~G~~~~~~~a~~~l~~lae~~g~pv~tt~~~k~~~~~~~~~~~~~~~~~~~~~aD~vl~v 279 (568) T 2c31_A 200 EDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMAKGLLPDNHPQSAAATRAFALAQCDVCVLI 279 (568) T ss_dssp HHHHHHHHHHHHTCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCEEECGGGTTSSCTTCTTBCGGGHHHHHHHCSEEEEE T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEC T ss_conf 99999999999717994899888722101799999999972998663021245677668642101211445567688751 Q ss_pred CC Q ss_conf 48 Q gi|254780901|r 157 DC 158 (600) Q Consensus 157 D~ 158 (600) .+ T Consensus 280 G~ 281 (568) T 2c31_A 280 GA 281 (568) T ss_dssp SC T ss_pred CC T ss_conf 67 No 69 >2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis, hydrolase; 1.91A {Thermoanaerobacter tengcongensis MB4} Probab=65.49 E-value=4 Score=19.26 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=21.6 Q ss_pred CCHHHHHHHHHCCCCEEEECCCCCCCCCC Q ss_conf 62345555541798279961544765556 Q gi|254780901|r 161 TSYDALQYATNQGIDVIVIDHHQVKSEEI 189 (600) Q Consensus 161 ~~~e~i~~a~~~GidvIVtDHH~~~~~~p 189 (600) ++.++...|.+.|.+.|=+|=|.-.+..| T Consensus 27 NTl~af~~a~~~Ga~~iE~DV~~T~Dg~~ 55 (252) T 2pz0_A 27 NTIAAFKRAMELGADGIELDVQLTKDGHL 55 (252) T ss_dssp TSHHHHHHHHHHTCSEEEEEEEECTTCCE T ss_pred HHHHHHHHHHHCCCCEEEEEEEECCCCCE T ss_conf 07999999998597989987658559968 No 70 >3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus} Probab=65.45 E-value=6.1 Score=17.80 Aligned_cols=11 Identities=18% Similarity=0.142 Sum_probs=4.8 Q ss_pred HHHHHCCCCEE Q ss_conf 55541798279 Q gi|254780901|r 167 QYATNQGIDVI 177 (600) Q Consensus 167 ~~a~~~GidvI 177 (600) ..+.+.||-+| T Consensus 92 ~~~~~~~ip~i 102 (392) T 3lkb_A 92 PLIQELRIPTI 102 (392) T ss_dssp HHHHHHTCCEE T ss_pred HHHHHCCCEEE T ss_conf 88876492387 No 71 >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A Probab=64.86 E-value=6.2 Score=17.72 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=41.3 Q ss_pred HHHHHHHCCCCEEEEE-CCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEC Q ss_conf 9999997699479980-78743366889789887420268689996488762345555541798279961 Q gi|254780901|r 112 MMRFLSHCSVNANMYI-PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180 (600) Q Consensus 112 l~~~L~~~g~~v~~~I-P~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtD 180 (600) +.+.+...|++--|.+ -++. .+-+.+...++++... +.+=|+++.|+.+.+.++.+-+.|.+-||.- T Consensus 37 ~a~~~~~~g~d~l~ivDLd~~-~~~~~~~~~i~~i~~~-~~~pi~vgGGirs~~~~~~~l~~Ga~kvii~ 104 (244) T 1vzw_A 37 AALAWQRSGAEWLHLVDLDAA-FGTGDNRALIAEVAQA-MDIKVELSGGIRDDDTLAAALATGCTRVNLG 104 (244) T ss_dssp HHHHHHHTTCSEEEEEEHHHH-HTSCCCHHHHHHHHHH-CSSEEEEESSCCSHHHHHHHHHTTCSEEEEC T ss_pred HHHHHHHCCCCEEEEEECCCC-CCCCCHHHHHHHHHHH-CCCCEEEECCEEEECCCCCCCCCCCCCCHHH T ss_conf 999999869998999833433-4677369999999986-2987477462875000211013454320445 No 72 >1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase, PHI, structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3 Probab=64.65 E-value=6.3 Score=17.69 Aligned_cols=91 Identities=18% Similarity=0.258 Sum_probs=50.2 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH--HHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEE Q ss_conf 87999999999997799799994078861528999--9999997699479980787433668897898874202686899 Q gi|254780901|r 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVAL--MMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLII 154 (600) Q Consensus 77 dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstai--l~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiI 154 (600) +++..++++.+.|.+.++|.+||- |.++..- +..-|..+|.++.+.-+. .. ..+ ..+ +++| T Consensus 25 ~~~~~i~~~~~~i~~a~~I~i~G~----G~S~~ia~~~~~~l~~~g~~~~~~~~~--~~---------~~~-~~~-Dv~i 87 (180) T 1jeo_A 25 EWKNKLDSLIDRIIKAKKIFIFGV----GRSGYIGRCFAMRLMHLGFKSYFVGET--TT---------PSY-EKD-DLLI 87 (180) T ss_dssp HHHHHHHHHHHHHHHCSSEEEECC----HHHHHHHHHHHHHHHHTTCCEEETTST--TC---------CCC-CTT-CEEE T ss_pred HHHHHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHHHHCCCCEEEEEEC--CC---------CCC-CCC-CEEE T ss_conf 889999999999978994999977----799999999999999739971886421--23---------568-999-9899 Q ss_pred EECC-CCC--CHHHHHHHHHCCCCEEE-ECCCCC Q ss_conf 9648-876--23455555417982799-615447 Q gi|254780901|r 155 TVDC-GST--SYDALQYATNQGIDVIV-IDHHQV 184 (600) Q Consensus 155 tvD~-Gi~--~~e~i~~a~~~GidvIV-tDHH~~ 184 (600) ..-. |-+ -.+.++.|+++|+.||. |....+ T Consensus 88 ~iS~sG~t~~~i~~~~~ak~~g~~vI~IT~~~~~ 121 (180) T 1jeo_A 88 LISGSGRTESVLTVAKKAKNINNNIIAIVCECGN 121 (180) T ss_dssp EEESSSCCHHHHHHHHHHHTTCSCEEEEESSCCG T ss_pred EECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 9759998089999999999759979999699997 No 73 >3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15} Probab=64.26 E-value=6.4 Score=17.64 Aligned_cols=122 Identities=15% Similarity=0.120 Sum_probs=64.1 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEE Q ss_conf 87999999999997799799994078861528999999999769947998078743366889789887420268689996 Q gi|254780901|r 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 (600) Q Consensus 77 dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItv 156 (600) +++.|+.+|+||+-..-+|-|||--|.+|+..-|+.-. ..+ ..+. |+.+ + +.+-+..--|+.+. T Consensus 23 ~iEdaARLLAQAiigeG~IYi~G~~Em~~v~~~al~g~--e~l-~~~~-----~l~~-~-------~~lt~tDRVLlFs~ 86 (170) T 3jx9_A 23 ELFDVVRLLAQALVGQGKVYLDAYGEFEGLYPMLSDGP--DQM-KRVT-----KIKD-H-------KTLHAVDRVLIFTP 86 (170) T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECGGGGGGTHHHHTST--TCC-TTEE-----ECCT-T-------CCCCTTCEEEEEES T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCC--CCC-CCCC-----CCCC-C-------CCCCCCCEEEEECC T ss_conf 79999999999871597799962567999999996287--556-4444-----4886-5-------65776686999759 Q ss_pred CCCCCCHHHHHHHHHC---CCCEEEECCCCCCCCCCC-CEEEEC--------CCCCCCCCCCCCHHHHHHHHH Q ss_conf 4887623455555417---982799615447655567-256523--------788886433443047889999 Q gi|254780901|r 157 DCGSTSYDALQYATNQ---GIDVIVIDHHQVKSEEIP-AYALVN--------PNRLDDLSGQGHLCAAGVVFL 217 (600) Q Consensus 157 D~Gi~~~e~i~~a~~~---GidvIVtDHH~~~~~~p~-a~aivN--------P~~~~~~~p~~~l~gaGvaf~ 217 (600) .+.+.+.++.++++ ++.+.++-.-. .++.|. +.+.|| |.-.+.-|.|+++-.+--+|+ T Consensus 87 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Id~kl~kpLvP~EdG~R~g~P~~m~~lyvYy 156 (170) T 3jx9_A 87 --DTERSDLLASLARYDAWHTPYSIITLGD-VTETLERSIAPLALKFDKGLLPAEDGSRHGLPSLALGAFLLT 156 (170) T ss_dssp --CSCCHHHHHHHHHHHHHTCCEEEEESSC-CCTTGGGSSSCEECCCCSCSEECTTSCEECCCHHHHHHHHHH T ss_pred --CCCHHHHHHHHHHHCCCCCEEEEECCCC-CCCCHHHHHEEEECCCCCCCCCCCCCCEECCHHHHHHHHHHH T ss_conf --9534899999998515886599963677-788535630100215688877188898600748999999999 No 74 >2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function, NPPSFA; 2.60A {Thermus thermophilus HB8} Probab=63.41 E-value=6.3 Score=17.67 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=24.0 Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCC Q ss_conf 868999648876234555554179827996154 Q gi|254780901|r 150 AQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 (600) Q Consensus 150 ~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH 182 (600) -++++|+|. ..+.++.|.+.|.|+|||-|= T Consensus 37 ~kI~~alD~---t~~vi~~Ai~~g~dlIItHHP 66 (242) T 2yyb_A 37 RKVGAAVDA---GEAIFRKALEEEVDFLIVHHG 66 (242) T ss_dssp CCEEEEEEC---SHHHHHHHHHTTCSEEEEEEC T ss_pred CEEEEEECC---CHHHHHHHHHCCCCEEEECCC T ss_conf 889999759---999999999879999997985 No 75 >2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis} Probab=63.37 E-value=6.6 Score=17.52 Aligned_cols=80 Identities=16% Similarity=0.252 Sum_probs=47.8 Q ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC-CH--------HHHHHHHHCCCCEEEEECC Q ss_conf 99779979999407886152899999999976994799807874336688-97--------8988742026868999648 Q gi|254780901|r 88 AIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP-NP--------SLMEKFINEGAQLIITVDC 158 (600) Q Consensus 88 ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl-~~--------~~i~~~~~~g~~LiItvD~ 158 (600) +.+++.+|.|| |--+-|+ +++.+..+.+-..-.+|+-|+-.-.||- +. +.++.+.+.|+++|+. =| T Consensus 3 ~~~~~~pIgvf-DSGiGGL---tvl~~l~~~lP~~~~iY~~D~a~~PYG~ks~eei~~~~~~~~~~L~~~~~~~IVI-AC 77 (276) T 2dwu_A 3 VCHKHSVIGVL-DSGVGGL---TVASEIIRQLPKESICYIGDNERCPYGPRSVEEVQSFVFEMVEFLKQFPLKALVV-AC 77 (276) T ss_dssp --CCCCEEEEE-ESSSTTH---HHHHHHHHHCTTSCEEEEECGGGCCCTTSCHHHHHHHHHHHHHHHTTSCEEEEEE-CC T ss_pred CCCCCCCEEEE-ECCCCHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE-EC T ss_conf 55689948999-6897679---9999999978999989996389999899999999999999999998579999999-26 Q ss_pred CCCCHHHHHHHHHC Q ss_conf 87623455555417 Q gi|254780901|r 159 GSTSYDALQYATNQ 172 (600) Q Consensus 159 Gi~~~e~i~~a~~~ 172 (600) -+.+.-.++.+++. T Consensus 78 NTaS~~al~~lr~~ 91 (276) T 2dwu_A 78 NTAAAATLAALQEA 91 (276) T ss_dssp HHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHC T ss_conf 71899999999733 No 76 >2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A* Probab=63.24 E-value=6.6 Score=17.51 Aligned_cols=79 Identities=23% Similarity=0.369 Sum_probs=49.3 Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCH---------HHHHHHHHCCCCEEEEECCCCCCHH Q ss_conf 7999940788615289999999997699479980787433668897---------8988742026868999648876234 Q gi|254780901|r 94 KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP---------SLMEKFINEGAQLIITVDCGSTSYD 164 (600) Q Consensus 94 kI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~---------~~i~~~~~~g~~LiItvD~Gi~~~e 164 (600) ||.|| |- |+-+-+++....+.+-..-.+|+-|...-.||--. ..++.+.+.|+++|+. =|-+.+.- T Consensus 2 kIgvf-DS---GiGGlsvl~~l~~~lp~~~~iY~~D~a~~PYG~ks~~~i~~~~~~~~~~l~~~~~~~IVI-ACNTasa~ 76 (255) T 2jfz_A 2 KIGVF-DS---GVGGFSVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHEIELLIV-ACNTASAL 76 (255) T ss_dssp EEEEE-ES---SSTTHHHHHHHHHTTCCSEEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHGGGCCSCEEE-CCHHHHHH T ss_pred EEEEE-EC---CCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE-CCCHHHHH T ss_conf 89999-28---976799999999878999989994478999898999999999999999999739998997-57689897 Q ss_pred HHHHHHHC-CCCEE Q ss_conf 55555417-98279 Q gi|254780901|r 165 ALQYATNQ-GIDVI 177 (600) Q Consensus 165 ~i~~a~~~-GidvI 177 (600) +++.+++. .+.+| T Consensus 77 al~~lr~~~~ipii 90 (255) T 2jfz_A 77 ALEEMQKYSKIPIV 90 (255) T ss_dssp THHHHHHHCSSCEE T ss_pred HHHHHHHCCCCCEE T ss_conf 56998844688667 No 77 >2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima} Probab=62.48 E-value=5.4 Score=18.20 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=18.5 Q ss_pred HHHHHHHCCCCEEEECC-CCCCCCCCCCEEEECC Q ss_conf 55555417982799615-4476555672565237 Q gi|254780901|r 165 ALQYATNQGIDVIVIDH-HQVKSEEIPAYALVNP 197 (600) Q Consensus 165 ~i~~a~~~GidvIVtDH-H~~~~~~p~a~aivNP 197 (600) .+..+.+.+.|++|.=| |.|.-+......+||| T Consensus 120 ~~~~~~~~~~divi~GHTH~~~~~~~~~~~iiNP 153 (178) T 2kkn_A 120 RLLKVFNEKPQVILFGHTHEPEDTVKAGVRFLNP 153 (178) T ss_dssp HHHHHSSSCCSEEECCSCSSCCEEEETTEEEECC T ss_pred HHHHHHHCCCCEEEECCCCCCEEEEECCEEEEEC T ss_conf 8887521389889968856521899899999979 No 78 >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2jfg_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Probab=61.99 E-value=6.9 Score=17.35 Aligned_cols=76 Identities=20% Similarity=0.365 Sum_probs=37.8 Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEC-----CC--CCCC----CC-CCHHHHHHHHHCCCCEEEEECC Q ss_conf 79979999407886152899999999976994799807-----87--4336----68-8978988742026868999648 Q gi|254780901|r 91 NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP-----DR--IVDG----YG-PNPSLMEKFINEGAQLIITVDC 158 (600) Q Consensus 91 ~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP-----~R--~~eG----YG-l~~~~i~~~~~~g~~LiItvD~ 158 (600) .+++|.|+| . |.|+-+. .++|...|++|..+=- .. +.++ +| ...+. -.+++++|. =. T Consensus 4 ~gk~i~iiG---~-G~sG~s~-a~~l~~~G~~v~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~d~vV~-Sp 72 (439) T 2x5o_A 4 QGKNVVIIG---L-GLTGLSC-VDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEW-----LMAADLIVA-SP 72 (439) T ss_dssp TTCCEEEEC---C-HHHHHHH-HHHHHTTTCCCEEEESSSSCTTGGGSCTTSCEEESSCCHHH-----HHTCSEEEE-CT T ss_pred CCCEEEEEE---E-CHHHHHH-HHHHHHCCCEEEEEECCCCCCHHHHHHHCCCEEECCCCHHH-----CCCCCEEEE-CC T ss_conf 989999999---8-8999999-99999787949999798992158999848987636879778-----589989998-99 Q ss_pred CCC-CHHHHHHHHHCCCCEE Q ss_conf 876-2345555541798279 Q gi|254780901|r 159 GST-SYDALQYATNQGIDVI 177 (600) Q Consensus 159 Gi~-~~e~i~~a~~~GidvI 177 (600) ||. +++++..|+++|+.++ T Consensus 73 gI~~~~p~l~~a~~~~i~i~ 92 (439) T 2x5o_A 73 GIALAHPSLSAAADAGIEIV 92 (439) T ss_dssp TSCTTCHHHHHHHHTTCEEE T ss_pred CCCCCCHHHHHHHHCCCCEE T ss_conf 13999999999998599287 No 79 >3nnp_A Xometc, cystathionine gamma-lyase-like protein; native, Cys-Met metabolism PLP-dependent ENZY family, pyridoxal-phosphate (PLP; HET: PLP; 2.29A {Xanthomonas oryzae PV} PDB: 3e6g_A* Probab=61.97 E-value=7 Score=17.34 Aligned_cols=92 Identities=10% Similarity=0.133 Sum_probs=49.5 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEE Q ss_conf 87999999999997799799994078861528999999999769947998078743366889789887420268689996 Q gi|254780901|r 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 (600) Q Consensus 77 dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItv 156 (600) +| .|+.-+...++.+..|.+.. ++=|-|-..+....++..|.++.++=+. +.+.++++...++++|..= T Consensus 91 Gm-AA~~~~l~~l~~Gd~ii~~~--~~y~~t~~~~~~~~~~~~gi~~~fvd~~--------d~~~~~~ai~~~t~li~~E 159 (400) T 3nnp_A 91 GM-AATSTVMELLDAGSHVVAMD--DLYGGTFRLFERVRRRTAGLDFSFVDLT--------DPAAFKAAIRADTKMVWIE 159 (400) T ss_dssp HH-HHHHHHHTTSCTTCEEEEES--SCCHHHHHHHHHTHHHHHCCEEEEECTT--------CHHHHHTTCCTTEEEEEEE T ss_pred HH-HHHHHHHHHCCCCCEEEEEC--CCCCCHHHHHHHHHHCCCEEEEEEECCC--------CHHHHHHHCCCCCEEEEEC T ss_conf 88-99999997217998899737--8757777740453411412699992798--------9899997437785699944 Q ss_pred C-----CCCCCHHHHH-HHHHCCCCEEEE Q ss_conf 4-----8876234555-554179827996 Q gi|254780901|r 157 D-----CGSTSYDALQ-YATNQGIDVIVI 179 (600) Q Consensus 157 D-----~Gi~~~e~i~-~a~~~GidvIVt 179 (600) - .-+.+.++|. .|++.|+-+||= T Consensus 160 spsNP~l~v~Di~~i~~iA~~~gi~~vvD 188 (400) T 3nnp_A 160 TPTNPMLKLVDIAAIAVIARKHGLLTVVD 188 (400) T ss_dssp SSCTTTCCCCCHHHHHHHHHHTTCEEEEE T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCEEEEE T ss_conf 88987410266799999998759839996 No 80 >3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Probab=61.71 E-value=7 Score=17.31 Aligned_cols=97 Identities=10% Similarity=0.078 Sum_probs=59.5 Q ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE-ECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHH Q ss_conf 9997799799994078861528999999999769947998-078743366889789887420268689996488762345 Q gi|254780901|r 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY-IPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDA 165 (600) Q Consensus 87 ~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~-IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~ 165 (600) +|+.+=++|+|.-|..-..-.+...-..+-+..++.+... +-.|-. .=..-.+..+.+.+.+.+..+.+..+-...++ T Consensus 2 ~~M~~~k~ILV~vd~s~~~~~al~~A~~lA~~~~a~l~~l~v~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (290) T 3mt0_A 2 NAMQAIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRRD-HSAALNDLAQELREEGYSVSTNQAWKDSLHQT 80 (290) T ss_dssp CTTTTCCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSSSC-CHHHHHHHHHHHHHTTCCEEEEEECSSSHHHH T ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCHH-HHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH T ss_conf 64125686999978987799999999999998599799999804489-99999999999996499558998417987999 Q ss_pred H-HHHHHCCCCEEEECCCCC Q ss_conf 5-555417982799615447 Q gi|254780901|r 166 L-QYATNQGIDVIVIDHHQV 184 (600) Q Consensus 166 i-~~a~~~GidvIVtDHH~~ 184 (600) | +.+++.+.|+||...|.. T Consensus 81 I~~~a~~~~~dlvv~g~~~~ 100 (290) T 3mt0_A 81 IIAEQQAEGCGLIIKQHFPD 100 (290) T ss_dssp HHHHHHHHTCSEEEEECCCS T ss_pred HHHHHHHCCCCCEEECCCCC T ss_conf 99999965997336446778 No 81 >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F Probab=61.27 E-value=7.1 Score=17.25 Aligned_cols=13 Identities=15% Similarity=-0.059 Sum_probs=5.1 Q ss_pred HHHHHHCEEEEEE Q ss_conf 9884201079988 Q gi|254780901|r 390 LKEKFGRPSFAIS 402 (600) Q Consensus 390 L~e~y~kP~iv~s 402 (600) ++..++.|...++ T Consensus 261 ~~~~~~~Pi~fig 273 (297) T 1j8m_F 261 AVAATGATIKFIG 273 (297) T ss_dssp HHHTTTCCEEEEE T ss_pred HHHHHCCCEEEEE T ss_conf 9999896979994 No 82 >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus VF5} SCOP: a.100.1.12 c.2.1.6 Probab=61.17 E-value=7.2 Score=17.24 Aligned_cols=78 Identities=19% Similarity=0.383 Sum_probs=40.9 Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCC----------------CCEEEEE Q ss_conf 979999407886152899999999976994799807874336688978988742026----------------8689996 Q gi|254780901|r 93 EKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEG----------------AQLIITV 156 (600) Q Consensus 93 ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g----------------~~LiItv 156 (600) ++|+|+| + |..++++.. +|+..|.++..+ ||..+++.++.+.+.| +++||.+ T Consensus 2 k~I~IiG---~-G~mG~sla~-~L~~~g~~~~V~-------~~d~~~~~~~~a~~~g~id~~~~~~~~~~~~~~dlvila 69 (281) T 2g5c_A 2 QNVLIVG---V-GFMGGSFAK-SLRRSGFKGKIY-------GYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS 69 (281) T ss_dssp CEEEEES---C-SHHHHHHHH-HHHHTTCCSEEE-------EECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC T ss_pred CEEEEEC---C-CHHHHHHHH-HHHHCCCCCEEE-------EEECCHHHHHHHHHCCCCCEECCCHHHHCCCCCCEEEEC T ss_conf 7899992---3-989999999-998169984899-------998999999999986997610463555314578889983 Q ss_pred CCCCCCHHHH-HH-HHHCCCCEEEECCCC Q ss_conf 4887623455-55-541798279961544 Q gi|254780901|r 157 DCGSTSYDAL-QY-ATNQGIDVIVIDHHQ 183 (600) Q Consensus 157 D~Gi~~~e~i-~~-a~~~GidvIVtDHH~ 183 (600) .-+.+..++ +. +.-..-++||+|==. T Consensus 70 -~p~~~~~~~~~~l~~~~~~~~ii~Dv~S 97 (281) T 2g5c_A 70 -SPVRTFREIAKKLSYILSEDATVTDQGS 97 (281) T ss_dssp -SCHHHHHHHHHHHHHHSCTTCEEEECCS T ss_pred -CCCHHHHHHHHHHHHCCCCCCEEECCCC T ss_conf -6804432156555310246621323344 No 83 >2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural genomics, PSI, protein structure initiative; 1.95A {Streptococcus pyogenes} SCOP: c.61.1.1 Probab=61.00 E-value=7.2 Score=17.22 Aligned_cols=101 Identities=19% Similarity=0.287 Sum_probs=54.4 Q ss_pred HHCCCCHHHCCCHHHHHHHHHHHHHC-CCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHH Q ss_conf 77189955614879999999999977-997-9999407886152899999999976994799807874336688978988 Q gi|254780901|r 66 RLLMPDPLILTDCDKAARRIVQAIYN-SEK-IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143 (600) Q Consensus 66 ~~l~~dP~~l~dm~~A~~ri~~ai~~-~ek-I~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~ 143 (600) +.+..+|..+.-+.++ +.+.+.. ... -.|.|- ..=|+.-++.+.. .++....| ..+...+||.... ++ T Consensus 42 r~~~~~p~~~~~i~~~---~~~~i~~~~~~~d~i~G~-~~~gipla~~ia~---~~~~p~~~--vRKe~K~hG~~~~-ie 111 (211) T 2aee_A 42 RVTLSYPKTRDLIENG---FVETIKAHFPEVEVIAGT-ATAGIPHGAIIAD---KMTLPFAY--IRSKPKDHGAGNQ-IE 111 (211) T ss_dssp GGGGGCHHHHHHHHHH---HHHHHHHHCTTCCEEEEE-TTTTHHHHHHHHH---HHTCCEEE--ECSSCC----CCS-EE T ss_pred HHHHCCHHHHHHHHHH---HHHHHHHHCCCCCEECCC-HHHHHHHHHHHHH---HHCCCCEE--EECCCCCCCHHHH-HH T ss_conf 3232597899999999---998887505553634031-3446999999999---75798235--5413455331232-21 Q ss_pred HHHHCCCCEEEEEC----CCCCCHHHHHHHHHCCCCEE Q ss_conf 74202686899964----88762345555541798279 Q gi|254780901|r 144 KFINEGAQLIITVD----CGSTSYDALQYATNQGIDVI 177 (600) Q Consensus 144 ~~~~~g~~LiItvD----~Gi~~~e~i~~a~~~GidvI 177 (600) -....|-+.+| || +|.|..+.++.+++.|..|. T Consensus 112 G~~~~g~~Vli-VEDViTTG~S~~~ai~~l~~~g~~V~ 148 (211) T 2aee_A 112 GRVLKGQKMVI-IEDLISTGGSVLDAAAAASREGADVL 148 (211) T ss_dssp SCCCTTCEEEE-EEEEESSCHHHHHHHHHHHHTTCEEE T ss_pred CCCCCCCEEEE-EEEEECCCCCHHHHHHHHHHCCCEEE T ss_conf 01379998999-85304567215765446887498066 No 84 >2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A* Probab=60.31 E-value=7.4 Score=17.14 Aligned_cols=82 Identities=18% Similarity=0.386 Sum_probs=54.2 Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC---------CHHHHHHHHHCCCCEEEEECCCCC Q ss_conf 79979999407886152899999999976994799807874336688---------978988742026868999648876 Q gi|254780901|r 91 NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP---------NPSLMEKFINEGAQLIITVDCGST 161 (600) Q Consensus 91 ~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl---------~~~~i~~~~~~g~~LiItvD~Gi~ 161 (600) ++.+|.|| |- |+-+-+++.+..+.+-..-.+|+-|...-.||- ..+.++.+.+.++++|+ +=|-+. T Consensus 11 ~~~pIgvF-DS---GvGGLtvl~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~i~~~~~~~~~~l~~~~~~~IV-iACNTa 85 (273) T 2oho_A 11 DTRPIGFL-DS---GVGGLTVVCELIRQLPHEKIVYIGDSARAPYGPRPKKQIKEYTWELVNFLLTQNVKMIV-FACNTA 85 (273) T ss_dssp CCCCEEEE-ES---SSTTHHHHHHHHHHCTTCCEEEEECGGGCCCTTSCHHHHHHHHHHHHHHHHTTTCSEEE-ECCHHH T ss_pred CCCCEEEE-EC---CCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEE-EECCCH T ss_conf 99988999-78---97779999999997899899999468889989999999999999999999960678499-982858 Q ss_pred CHHHHHHHHHC-CCCEE Q ss_conf 23455555417-98279 Q gi|254780901|r 162 SYDALQYATNQ-GIDVI 177 (600) Q Consensus 162 ~~e~i~~a~~~-GidvI 177 (600) +.-+++.+++. .+.+| T Consensus 86 sa~al~~lr~~~~~pii 102 (273) T 2oho_A 86 TAVAWEEVKAALDIPVL 102 (273) T ss_dssp HHHHHHHHHHHCSSCEE T ss_pred HHHHHHHHHHHCCCCEE T ss_conf 88759999864798776 No 85 >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* Probab=60.15 E-value=7.4 Score=17.12 Aligned_cols=114 Identities=12% Similarity=0.122 Sum_probs=68.6 Q ss_pred HHHHHCCCCHHHCCCCHHHCCC-HHHHHHHHHHH-HHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 9886619667771899556148-79999999999-977997999940788615289999999997699479980787433 Q gi|254780901|r 56 YAKDFLNPSIRLLMPDPLILTD-CDKAARRIVQA-IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD 133 (600) Q Consensus 56 ~~~~fL~p~l~~l~~dP~~l~d-m~~A~~ri~~a-i~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~e 133 (600) .++.++..+ +++..+.+ -..|.+..... ++.+.+|+|.- . |.=| ..+.+.++.+|+++..+ | ..+ T Consensus 50 ~l~~~~~~~-----~~~v~~~gsgt~a~ea~~~~ll~~Gd~Vlv~~-~---g~f~-~~~~~~a~~~G~~v~~i-~--~~~ 116 (392) T 2z9v_A 50 KAQKAMRLS-----NKPVILHGEPVLGLEAAAASLISPDDVVLNLA-S---GVYG-KGFGYWAKRYSPHLLEI-E--VPY 116 (392) T ss_dssp HHHHHTTCS-----SCCEEESSCTHHHHHHHHHHHCCTTCCEEEEE-S---SHHH-HHHHHHHHHHCSCEEEE-E--CCT T ss_pred HHHHHHCCC-----CCEEEEECCHHHHHHHHHHHHCCCCCEEEEEC-C---CHHH-HHHHHHHHHCCCEEEEE-E--CCC T ss_conf 999996899-----98799979779999999997368998799953-7---6178-99999999719847995-1--688 Q ss_pred CCCCCHHHHHHHHHC--CCCEEEEECCCCC-----CHHHH-HHHHHCCCCEEEECCC Q ss_conf 668897898874202--6868999648876-----23455-5554179827996154 Q gi|254780901|r 134 GYGPNPSLMEKFINE--GAQLIITVDCGST-----SYDAL-QYATNQGIDVIVIDHH 182 (600) Q Consensus 134 GYGl~~~~i~~~~~~--g~~LiItvD~Gi~-----~~e~i-~~a~~~GidvIVtDHH 182 (600) +.+++.+.++++.+. .+++|..+-+-++ +.++| +.+++.|+.++|=.=| T Consensus 117 ~~~id~~~le~al~~~~~~k~V~l~~~~t~tG~~~pi~~i~~l~~~~g~~lvvDavs 173 (392) T 2z9v_A 117 NEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVS 173 (392) T ss_dssp TSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTT T ss_pred CCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEECCHHHHHHHHHHCCCEEEEEECC T ss_conf 887899999999715999539999777766744436788755677539738996034 No 86 >2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7 Probab=59.98 E-value=7.5 Score=17.09 Aligned_cols=30 Identities=23% Similarity=0.457 Sum_probs=13.2 Q ss_pred HHHHCCCCEEEECC-CCCCCCCCCCEEEECC Q ss_conf 55417982799615-4476555672565237 Q gi|254780901|r 168 YATNQGIDVIVIDH-HQVKSEEIPAYALVNP 197 (600) Q Consensus 168 ~a~~~GidvIVtDH-H~~~~~~p~a~aivNP 197 (600) .+++.+.|++|.=| |.|.-.......+||| T Consensus 136 ~~~~~~~dvvv~GHTH~p~~~~~~g~l~iNP 166 (215) T 2a22_A 136 WQRRLDCDILVTGHTHKLRVFEKNGKLFLNP 166 (215) T ss_dssp HHHHHTCSEEEECSSCCCEEEEETTEEEEEC T ss_pred HHHCCCCCEEEECCCCCCCEEEECCEEEEEC T ss_conf 8750289989979989764799999999948 No 87 >1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 Probab=59.68 E-value=7.6 Score=17.06 Aligned_cols=53 Identities=8% Similarity=0.098 Sum_probs=23.9 Q ss_pred HHHCCCHHHHHHHHHHHHHC--------CCCE-EEEECCCCCHHHHHHHHHH-HHHHCCCCEEEEEC Q ss_conf 55614879999999999977--------9979-9994078861528999999-99976994799807 Q gi|254780901|r 72 PLILTDCDKAARRIVQAIYN--------SEKI-MIFGDYDVDGAASVALMMR-FLSHCSVNANMYIP 128 (600) Q Consensus 72 P~~l~dm~~A~~ri~~ai~~--------~ekI-~I~gDyD~DGitstail~~-~L~~~g~~v~~~IP 128 (600) +..+..+-.-+..+.+..++ ++.| ++| -.--|-|-+=++ +..++|..+.++.+ T Consensus 16 ~~ei~~ll~~A~~lk~~~~~~~~~~~l~gk~v~llF----~~pStRTR~SFe~A~~~LGg~~i~~~~ 78 (308) T 1ml4_A 16 KEDIETVLATAERLERELKEKGQLEYAKGKILATLF----FEPSTRTRLSFESAMHRLGGAVIGFAE 78 (308) T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCTTTTCEEEEEE----SSCCSHHHHHHHHHHHHTTCEEEEESC T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE----CCCCCCHHHHHHHHHHHCCCCEEECCC T ss_conf 999999999999999877606887767998899983----489753789999999975992786678 No 88 >2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Probab=59.62 E-value=7.6 Score=17.05 Aligned_cols=91 Identities=19% Similarity=0.207 Sum_probs=57.7 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEE Q ss_conf 48799999999999779979999407886152899999999976994799807874336688978988742026868999 Q gi|254780901|r 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIIT 155 (600) Q Consensus 76 ~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiIt 155 (600) .-+..|+.- ..++.++..|+++| .--....+|+. +-...| .+||..|+.-|-==| -+.. ....++|+|. T Consensus 56 ~~L~~A~~~-i~~i~~~~~ilfV~---tk~~~~~~v~k-~A~~~g---~~~v~~Rw~gG~lTN--~i~~-~~~~P~lliv 124 (295) T 2zkq_b 56 EKLLLAARA-IVAIENPADVSVIS---SRNTGQRAVLK-FAAATG---ATPIAGRFTPGTFTN--QIQA-AFREPRLLVV 124 (295) T ss_dssp HHHHHHHHH-HHHSSCGGGEEEEE---CSHHHHHHHHH-HHHHHC---CEEEESSCCCC-CCC--TTCS-SCCCCSEEEE T ss_pred HHHHHHHHH-HHHHHCCCCEEEEE---CCHHHHHHHHH-HHHHHC---CEEEECCCCCCCCCC--HHHH-CCCCCCEEEE T ss_conf 999999999-99985899379998---96469999999-999969---973303214886552--2342-2457870477 Q ss_pred ECCCCCCHHHHHHHHHCCCCEEE Q ss_conf 64887623455555417982799 Q gi|254780901|r 156 VDCGSTSYDALQYATNQGIDVIV 178 (600) Q Consensus 156 vD~Gi~~~e~i~~a~~~GidvIV 178 (600) +|-- ..+.+|..|+.+||-||- T Consensus 125 ~dp~-~d~~av~Ea~~~~IPvia 146 (295) T 2zkq_b 125 TDPR-ADHQPLTEASYVNLPTIA 146 (295) T ss_dssp SCTT-TTHHHHHHHHHHTCCEEE T ss_pred ECCC-CCHHHHHHHHHCCCCEEE T ss_conf 6666-434889999874999899 No 89 >3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structural genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp} Probab=59.54 E-value=7.6 Score=17.04 Aligned_cols=69 Identities=16% Similarity=0.169 Sum_probs=44.3 Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCC-CHHHHHHHHHCCCCEEEECCC Q ss_conf 99999976994799807874336688978988742026868999648876-234555554179827996154 Q gi|254780901|r 112 MMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGST-SYDALQYATNQGIDVIVIDHH 182 (600) Q Consensus 112 l~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~-~~e~i~~a~~~GidvIVtDHH 182 (600) +.++.+.+|.++.++-|+..+. --..+.++.+.+.+++-||.+-...+ ..+.++.+++.||-||..|.= T Consensus 26 ~~~aa~~~g~~~~~~~~~~~d~--~~q~~~i~~~i~~~vDgIii~~~d~~~~~~~l~~~~~~gIpVv~~~~~ 95 (303) T 3d02_A 26 VVQAGKEFNLNASQVGPSSTDA--PQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKARDAGIVVLTNESP 95 (303) T ss_dssp HHHHHHHTTEEEEEECCSSSCH--HHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHHHHTTCEEEEESCT T ss_pred HHHHHHHCCCEEEEEECCCCCH--HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEEE T ss_conf 9999998299899996899999--999999999997599999995688377799999999769879999630 No 90 >2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A* Probab=59.52 E-value=7.6 Score=17.04 Aligned_cols=119 Identities=17% Similarity=0.240 Sum_probs=61.0 Q ss_pred HHHHHHHH----HHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCC---------CC--CCH Q ss_conf 79999999----999977--9979999407886152899999999976-994799807874336---------68--897 Q gi|254780901|r 78 CDKAARRI----VQAIYN--SEKIMIFGDYDVDGAASVALMMRFLSHC-SVNANMYIPDRIVDG---------YG--PNP 139 (600) Q Consensus 78 m~~A~~ri----~~ai~~--~ekI~I~gDyD~DGitstail~~~L~~~-g~~v~~~IP~R~~eG---------YG--l~~ 139 (600) -|+|.+.| .+.+++ .+.|..++-.-.-|--+..++.++++.. |.. .+....+.-.+ +| ... T Consensus 80 WdeAl~~IA~kl~~i~~~~G~~~v~~~~~~~~~~~~~~~~~~~f~~~~~gt~-n~~~~~~~~~~~~~~~~~~~~G~~~~~ 158 (715) T 2iv2_X 80 WDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARAVIGTN-NVDCCARVXHGPSVAGLHQSVGNGAMS 158 (715) T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGEEEECCSSTTCHHHHHHHHHHHHHTTCCC-CEECSSCCSCCSSSCSHHHHHSCCSCS T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHHHHCCCCCCC T ss_conf 9999999999999999974987699980588744399999999999837999-766431001467778777532688878 Q ss_pred HHHHHHHHCCCCEEEEECCCCCC-------HHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCCCCCCC Q ss_conf 89887420268689996488762-------34555554179827996154476555672565237888864 Q gi|254780901|r 140 SLMEKFINEGAQLIITVDCGSTS-------YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDL 203 (600) Q Consensus 140 ~~i~~~~~~g~~LiItvD~Gi~~-------~e~i~~a~~~GidvIVtDHH~~~~~~p~a~aivNP~~~~~~ 203 (600) ...+++ +.+++|+.. |... ...+..++++|..+||+|...... --.|+.-+-+ +++.+ T Consensus 159 ~~~~d~--~~ad~iv~~--G~np~~~~~~~~~~~~~a~~~G~klvvIdPr~t~t-a~~AD~~i~i-~PGtD 223 (715) T 2iv2_X 159 NAINEI--DNTDLVFVF--GYNPADSHPIVANHVINAKRNGAKIIVCDPRKIET-ARIADMHIAL-KNGSN 223 (715) T ss_dssp SCGGGG--GGCSEEEEE--SCCHHHHCHHHHHHHHHHHHTTCEEEEECSSCCHH-HHTCSEEECC-CTTCH T ss_pred CCCCCC--CCCCEEEEC--CCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH-HHHHCCCCCC-CCCCH T ss_conf 752100--066347867--70724320257888999997799899857866715-5542003566-98968 No 91 >3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A* Probab=59.23 E-value=7.7 Score=17.00 Aligned_cols=71 Identities=15% Similarity=0.283 Sum_probs=44.3 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECC-CCCCHHHHHHHHHCCCCEEEECCC Q ss_conf 99999999976994799807874336688978988742026868999648-876234555554179827996154 Q gi|254780901|r 109 VALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC-GSTSYDALQYATNQGIDVIVIDHH 182 (600) Q Consensus 109 tail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~-Gi~~~e~i~~a~~~GidvIVtDHH 182 (600) ..-+-+..+.+|.++.+.-++--.+ -..+.++.+..++++-||.+-. +....+.++.|.+.||.||..|-= T Consensus 21 ~~~~~~~a~~~G~~~~v~~~~~d~~---~q~~~i~~li~~~vDgIii~~~d~~~~~~~~~~a~~~gipvV~~d~~ 92 (313) T 3m9w_A 21 RDIFVKKAESLGAKVFVQSANGNEE---TQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRM 92 (313) T ss_dssp HHHHHHHHHHTSCEEEEEECTTCHH---HHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESSC T ss_pred HHHHHHHHHHCCCEEEEEECCCCHH---HHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCC T ss_conf 9999999997399899995999999---99999999997699999981762231489999999869968970354 No 92 >1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3 Probab=59.11 E-value=7.7 Score=16.99 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=38.3 Q ss_pred HHHCCCHHHHHHHHHHH-HHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEE Q ss_conf 55614879999999999-977997999940788615289999999997699479 Q gi|254780901|r 72 PLILTDCDKAARRIVQA-IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 (600) Q Consensus 72 P~~l~dm~~A~~ri~~a-i~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~ 124 (600) |+-|++.++-.+++.+. |.++.+|.||+| ..|..+++-++-.|+.+|.+|. T Consensus 74 ~~~LP~~e~~~~~l~~lGI~~dt~VVvYd~--~~g~~~A~R~~w~L~~~G~~V~ 125 (373) T 1okg_A 74 RHPLPPXAEFIDWCMANGMAGELPVLCYDD--ECGAMGGCRLWWMLNSLGADAY 125 (373) T ss_dssp SSCCCCHHHHHHHHHHTTCSSSSCEEEECS--STTTTTHHHHHHHHHHHTCCEE T ss_pred CCCCCCHHHHHHHHHHCCCCCCCEEEEEEC--CCCCHHHHHHHHHHHHCCCCEE T ss_conf 888969999999999739899987999969--9997078999999972774069 No 93 >3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Probab=59.05 E-value=7.7 Score=16.98 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=24.1 Q ss_pred CEEEEECC---CCCHHHHHHHHHHHHHHHHCEEEEEEECC Q ss_conf 50262057---85812222227899884201079988637 Q gi|254780901|r 369 SVIVVEGD---RWHPGIVGLLAARLKEKFGRPSFAISFEE 405 (600) Q Consensus 369 ~~ivv~~~---~wh~GViGIVAsrL~e~y~kP~iv~s~~~ 405 (600) ..+|+... .+..=++|=++.+++..-..|++|+-..+ T Consensus 253 dLlvmg~~~~~~l~~~~~Gs~t~~l~~~~~~PvLvv~~~~ 292 (294) T 3loq_A 253 TTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCKRGD 292 (294) T ss_dssp SEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEECSCT T ss_pred CEEEEECCCCCCHHHCCCCHHHHHHHHHCCCCEEEEECCC T ss_conf 8999957888631331157299999971899799996998 No 94 >1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3h07_A Probab=58.58 E-value=4.5 Score=18.81 Aligned_cols=72 Identities=14% Similarity=0.250 Sum_probs=43.1 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCC Q ss_conf 99999999997799799994078861528999999999769947998078743366889789887420268689996488 Q gi|254780901|r 80 KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 (600) Q Consensus 80 ~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~G 159 (600) ..++...+++++++.|.|+-|.|-.+ +....+|-- -++++.|..+...+..||-++ . T Consensus 14 ~~i~~ai~al~~G~~Viv~Dd~dRE~----------------EgDlv~aAe-----~iT~e~i~fm~~~~~GliC~a-~- 70 (217) T 1g57_A 14 ERVENALAALREGRGVMVLDDEDREN----------------EGDMIFPAE-----TMTVEQMALTIRHGSGIVCLC-I- 70 (217) T ss_dssp HHHHHHHHHHHTTCCEEEEC----CC----------------CEEEEEETT-----TCCHHHHHHHHHHBCSCCEEE-E- T ss_pred CHHHHHHHHHHCCCEEEEEECCCCCC----------------CCCEEEEHH-----HCCHHHHHHHHHHCCCCEEEC-C- T ss_conf 05999999998799799986899887----------------517897857-----599999999999489888972-7- Q ss_pred CCCHHHHHHHHHCCCCEEEE Q ss_conf 76234555554179827996 Q gi|254780901|r 160 STSYDALQYATNQGIDVIVI 179 (600) Q Consensus 160 i~~~e~i~~a~~~GidvIVt 179 (600) +. +.+..+|+..++. T Consensus 71 --~~---~~~~~L~Lp~m~~ 85 (217) T 1g57_A 71 --TE---DRRKQLDLPMMVE 85 (217) T ss_dssp --CH---HHHHHTTCCBSCS T ss_pred --CH---HHHHHCCCCCCCC T ss_conf --89---9995369997355 No 95 >2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* Probab=57.95 E-value=7.1 Score=17.27 Aligned_cols=84 Identities=14% Similarity=0.177 Sum_probs=46.1 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE------ECCCC------CCCCCCCHHHHHHHH Q ss_conf 999999999997799799994078861528999999999769947998------07874------336688978988742 Q gi|254780901|r 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY------IPDRI------VDGYGPNPSLMEKFI 146 (600) Q Consensus 79 ~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~------IP~R~------~eGYGl~~~~i~~~~ 146 (600) .+.++++.+.+.+.++.+|+....+.---+...+.++.+.+|+.+..- +|... .-|.+.+.. .+++. T Consensus 198 ~~~~~~~~~~l~~akrpvii~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~hp~~~G~~~g~~~~~~-~~~~l 276 (563) T 2vk8_A 198 KEVIDTILVLDKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPE-VKEAV 276 (563) T ss_dssp HHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCCCEEECTTTTTSSCTTSTTEEEECCGGGSCHH-HHHHH T ss_pred HHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCHHH-HHHHH T ss_conf 99999999998546797430688755303589999998752687535600025788887001475766765189-99997 Q ss_pred HCCCCEEEEECCCCCCHH Q ss_conf 026868999648876234 Q gi|254780901|r 147 NEGAQLIITVDCGSTSYD 164 (600) Q Consensus 147 ~~g~~LiItvD~Gi~~~e 164 (600) ++ ++++|++.+-..... T Consensus 277 ~~-aD~vl~lG~~~~~~~ 293 (563) T 2vk8_A 277 ES-ADLILSVGALLSDFN 293 (563) T ss_dssp HT-CSEEEEESCCCCTTT T ss_pred HC-CCCEEEEEEECCCCC T ss_conf 45-784699986046532 No 96 >1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium LT2} SCOP: c.93.1.1 PDB: 1tm2_A 3ejw_A* Probab=57.60 E-value=8.1 Score=16.81 Aligned_cols=91 Identities=16% Similarity=0.193 Sum_probs=57.3 Q ss_pred CCCCEEEEECCCCCHHHHHH--HHHHHHHHCCCCEEEEECCCCCCCCCCC--HHHHHHHHHCCCCEEEEECCCCC-CHHH Q ss_conf 79979999407886152899--9999999769947998078743366889--78988742026868999648876-2345 Q gi|254780901|r 91 NSEKIMIFGDYDVDGAASVA--LMMRFLSHCSVNANMYIPDRIVDGYGPN--PSLMEKFINEGAQLIITVDCGST-SYDA 165 (600) Q Consensus 91 ~~ekI~I~gDyD~DGitsta--il~~~L~~~g~~v~~~IP~R~~eGYGl~--~~~i~~~~~~g~~LiItvD~Gi~-~~e~ 165 (600) +.++|++..-+-.+..-... =+.++.+.+|.++.+.-|... ... .+.++.++..+++-||..-.-.. ..+. T Consensus 2 ~~~~I~~i~~~~~n~f~~~~~~G~~~~a~~~g~~v~~~~~~~~----d~~~q~~~i~~~i~~~vDgiii~~~~~~~~~~~ 77 (316) T 1tjy_A 2 SAERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEP----SVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPA 77 (316) T ss_dssp CCCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSC----CHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHH T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC----CHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH T ss_conf 7778999958899989999999999999982998999979999----999999999999976999899825201112589 Q ss_pred HHHHHHCCCCEEEECCCCCC Q ss_conf 55554179827996154476 Q gi|254780901|r 166 LQYATNQGIDVIVIDHHQVK 185 (600) Q Consensus 166 i~~a~~~GidvIVtDHH~~~ 185 (600) +..+++.|+.|+..|...++ T Consensus 78 ~~~~~~~gipvv~~d~~~~~ 97 (316) T 1tjy_A 78 LKRAMQRGVKILTWDSDTKP 97 (316) T ss_dssp HHHHHHTTCEEEEESSCCCG T ss_pred HHHHHHCCCCEEEECCCCCC T ss_conf 99998649956850354677 No 97 >3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} Probab=57.31 E-value=8.2 Score=16.77 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=9.0 Q ss_pred CCEE-EEECCCCCHHHHHHHHHHHH Q ss_conf 9799-99407886152899999999 Q gi|254780901|r 93 EKIM-IFGDYDVDGAASVALMMRFL 116 (600) Q Consensus 93 ekI~-I~gDyD~DGitstail~~~L 116 (600) .+|- ++-|..+|.-.+.....+++ T Consensus 44 ~~i~l~~~D~~~~~~~a~~~a~~li 68 (358) T 3hut_A 44 RPVDILYADSRDDADQARTIARAFV 68 (358) T ss_dssp BCEEEEEEECTTCHHHHHHHHHHHH T ss_pred EEEEEEEECCCCCHHHHHHHHHHHH T ss_conf 6889999718999999999999998 No 98 >1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1 Probab=56.55 E-value=8.4 Score=16.68 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=45.3 Q ss_pred CCCEEEEECCCCCHH---HHHHHHHHHHHHCCCCEEEE--ECCCCCCCCCCCHHHHHH-HHHCCCCEEEEECCCCCCHHH Q ss_conf 997999940788615---28999999999769947998--078743366889789887-420268689996488762345 Q gi|254780901|r 92 SEKIMIFGDYDVDGA---ASVALMMRFLSHCSVNANMY--IPDRIVDGYGPNPSLMEK-FINEGAQLIITVDCGSTSYDA 165 (600) Q Consensus 92 ~ekI~I~gDyD~DGi---tstail~~~L~~~g~~v~~~--IP~R~~eGYGl~~~~i~~-~~~~g~~LiItvD~Gi~~~e~ 165 (600) +=++.|..=-|-=|. +++.+|...|+..|+++.++ +|+.... ....+.+ +...++++|||. |.++... T Consensus 13 ~~~~avitvsD~~~~~~D~nGp~L~~~l~~~G~~v~~~~iv~Dd~~~----i~~~~~~~~~~~~~dvIiT~--GGtg~g~ 86 (169) T 1y5e_A 13 EVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKES----IQQAVLAGYHKEDVDVVLTN--GGTGITK 86 (169) T ss_dssp CCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHH----HHHHHHHHHTCTTCSEEEEE--CCCSSST T ss_pred CCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCHHH----HHHHHHHHHHCCCCCEEEEE--CCCCCCC T ss_conf 87899999818888776850999999999779977898745897999----99999999865698389973--4414775 Q ss_pred ---HHHHHHCCCCEEE Q ss_conf ---5555417982799 Q gi|254780901|r 166 ---LQYATNQGIDVIV 178 (600) Q Consensus 166 ---i~~a~~~GidvIV 178 (600) ...+.+...+..+ T Consensus 87 ~D~t~~~~~~~~~~~~ 102 (169) T 1y5e_A 87 RDVTIEAVSALLDKEI 102 (169) T ss_dssp TCCHHHHHHTTCSEEC T ss_pred CCCHHHHHHHHCCCCC T ss_conf 3427999976113435 No 99 >2p1z_A Phosphoribosyltransferase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.44A {Corynebacterium diphtheriae NCTC13129} Probab=56.54 E-value=8.4 Score=16.68 Aligned_cols=108 Identities=10% Similarity=0.114 Sum_probs=58.7 Q ss_pred HHHCCCCHHHCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH--HHHHHHCCCCEEEEECCCCCCCC Q ss_conf 8661966777189955614879999999999977997999940788615289999--99999769947998078743366 Q gi|254780901|r 58 KDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALM--MRFLSHCSVNANMYIPDRIVDGY 135 (600) Q Consensus 58 ~~fL~p~l~~l~~dP~~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail--~~~L~~~g~~v~~~IP~R~~eGY 135 (600) ..|++ ++.+..+|..+. ..++.+.+-+...+...|. |+++.++. +-.....+.++......+..++| T Consensus 33 ~~Yid--~~~~~~~p~~~~---~l~~~l~~~~~~~~~~~i~------gi~~~g~~~a~~~~~a~~~~l~~~~~rke~k~~ 101 (180) T 2p1z_A 33 DYYVD--LRRATLHARASR---LIGELLRELTADWDYVAVG------GLTLGADPVATSVMHADGREIHAFVVRKEAKKH 101 (180) T ss_dssp --CCC--THHHHTSHHHHH---HHHHHHHHTTTTSCCSEEE------EETTTHHHHHHHHHHSSSSCCEEEEECSCCC-C T ss_pred CEEEE--CCCCCCCHHHHH---HHHHHHHHHHHCCCCCEEE------ECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCC T ss_conf 98784--952224889999---9999999876346862897------413112688889999847778627998751567 Q ss_pred CCCHHHHHHHHHCCCCEEEEEC---CCCCCHHHHHHHHHCCCCEE Q ss_conf 8897898874202686899964---88762345555541798279 Q gi|254780901|r 136 GPNPSLMEKFINEGAQLIITVD---CGSTSYDALQYATNQGIDVI 177 (600) Q Consensus 136 Gl~~~~i~~~~~~g~~LiItvD---~Gi~~~e~i~~a~~~GidvI 177 (600) |.... ++.....|-+.+|.=| +|.|..+.++.+++.|.+|+ T Consensus 102 g~~~~-~~g~~~~g~rVlIVDDviTTG~S~~~~i~~l~~~G~~V~ 145 (180) T 2p1z_A 102 GMQRR-IEGPDVVGKKVLVVEDTTTTGNSPLTAVKALREAGAEVV 145 (180) T ss_dssp C-CCS-EESSCCTTCEEEEEEEECSSSHHHHHHHHHHHHHTCEEE T ss_pred CCCEE-EEEEECCCCEEEEEEEEECCCHHHHHHHHHHHHCCCEEE T ss_conf 63035-775405897689997523037519999999998899799 No 100 >1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, zinc, metallo- enzyme, structure 2 function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A Probab=56.43 E-value=5 Score=18.44 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=18.2 Q ss_pred CCCCCCHHH-HHHHHHCCCCEE-EECCC Q ss_conf 488762345-555541798279-96154 Q gi|254780901|r 157 DCGSTSYDA-LQYATNQGIDVI-VIDHH 182 (600) Q Consensus 157 D~Gi~~~e~-i~~a~~~GidvI-VtDHH 182 (600) |+|.++.++ ++.|++.|++.| ||||- T Consensus 14 ~dg~~~~~e~v~~A~~~G~~~iaiTDH~ 41 (245) T 1m65_A 14 THAYSTLSDYIAQAKQKGIKLFAITDHG 41 (245) T ss_dssp TTCCCCHHHHHHHHHHHTCCEEEEEEEC T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEECCC T ss_conf 9866859999999998799999980899 No 101 >3ksm_A ABC-type sugar transport system, periplasmic component; PSI- II, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis kctc 2396} Probab=56.28 E-value=8.5 Score=16.65 Aligned_cols=72 Identities=10% Similarity=0.063 Sum_probs=43.5 Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHH-HCCCCEEEEECCCC-CCHHHHHHHHHCCCCEEEECCCCCC Q ss_conf 9999976994799807874336688978988742-02686899964887-6234555554179827996154476 Q gi|254780901|r 113 MRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI-NEGAQLIITVDCGS-TSYDALQYATNQGIDVIVIDHHQVK 185 (600) Q Consensus 113 ~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~-~~g~~LiItvD~Gi-~~~e~i~~a~~~GidvIVtDHH~~~ 185 (600) .++.+..|.++.++.++.-.+ .--..+.++.+. +.+++-||.+-+.. ...+.++.+++.||.||.+|.+.++ T Consensus 23 ~~~a~~~g~~~~~~~~~~~~d-~~~q~~~i~~~l~~~~~Dgiii~~~~~~~~~~~i~~~~~~~Ipvv~~d~~~~~ 96 (276) T 3ksm_A 23 QKAADEAGVTLLHRSTKDDGD-IAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQYRARNIPVLVVDSDLAG 96 (276) T ss_dssp HHHHHHHTCEEEECCCSSTTC-HHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCSS T ss_pred HHHHHHCCCEEEEEECCCCCC-HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCC T ss_conf 999998299999995899868-99999999999982799899992798577799999999779949997255467 No 102 >2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, structural genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A Probab=55.98 E-value=6.4 Score=17.60 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=17.8 Q ss_pred CCHHHHHHHH-HCCCCEEEECCCCCCCCC Q ss_conf 6234555554-179827996154476555 Q gi|254780901|r 161 TSYDALQYAT-NQGIDVIVIDHHQVKSEE 188 (600) Q Consensus 161 ~~~e~i~~a~-~~GidvIVtDHH~~~~~~ 188 (600) ++.++...|- +.|.|.|=+|=+.-.+.. T Consensus 39 NTl~af~~A~~~~Gad~iE~DV~~T~Dg~ 67 (287) T 2oog_A 39 HTFQAYDKSHNELKASYIEIDLQRTKDGH 67 (287) T ss_dssp SSHHHHHHHHHTSCCSEEEEEEEECTTCC T ss_pred CHHHHHHHHHHHCCCCEEEEEEEEECCCC T ss_conf 06999999999759998998789904998 No 103 >3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, structural genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406} Probab=55.90 E-value=7.1 Score=17.29 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=12.2 Q ss_pred CHHHHHHHHHCCCCEEEECCCCCC Q ss_conf 234555554179827996154476 Q gi|254780901|r 162 SYDALQYATNQGIDVIVIDHHQVK 185 (600) Q Consensus 162 ~~e~i~~a~~~GidvIVtDHH~~~ 185 (600) +.++...|.+.|.+.|=+|=+.-. T Consensus 25 Tl~a~~~a~~~G~~~iE~DV~~Tk 48 (272) T 3ch0_A 25 TIAAFTKALLLGVTTLEFDLVISK 48 (272) T ss_dssp SHHHHHHHHHHTCSEEEEEEEECT T ss_pred HHHHHHHHHHCCCCEEEEEEEEEE T ss_conf 699999999859699998860813 No 104 >3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver domain, target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} Probab=55.90 E-value=2.6 Score=20.75 Aligned_cols=13 Identities=38% Similarity=0.577 Sum_probs=5.6 Q ss_pred CCCEEEECCCCCC Q ss_conf 9827996154476 Q gi|254780901|r 173 GIDVIVIDHHQVK 185 (600) Q Consensus 173 GidvIVtDHH~~~ 185 (600) .+|++++|...|. T Consensus 49 ~~dlvilD~~mp~ 61 (143) T 3jte_A 49 SIDVVITDMKMPK 61 (143) T ss_dssp TCCEEEEESCCSS T ss_pred CCEEEEECCCCCC T ss_conf 9739997477777 No 105 >3l12_A Putative glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Silicibacter pomeroyi} Probab=55.73 E-value=8.7 Score=16.59 Aligned_cols=29 Identities=7% Similarity=0.195 Sum_probs=20.1 Q ss_pred CCHHHHHHHHHCCCCEEEECCCCCCCCCC Q ss_conf 62345555541798279961544765556 Q gi|254780901|r 161 TSYDALQYATNQGIDVIVIDHHQVKSEEI 189 (600) Q Consensus 161 ~~~e~i~~a~~~GidvIVtDHH~~~~~~p 189 (600) +..++.+.|.+.|.|.|=+|=+.-.+..| T Consensus 33 NTl~a~~~A~~~Ga~~iE~DV~lTkDg~~ 61 (313) T 3l12_A 33 NTLEGFAFTLAAGVRALEFDVVMTADGVP 61 (313) T ss_dssp TCHHHHHHHHHTTCCEEEEEEEECTTSCE T ss_pred CHHHHHHHHHHCCCCEEEEEEEEECCCCE T ss_conf 26999999998697989987778028999 No 106 >2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron} Probab=55.42 E-value=8.8 Score=16.55 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=42.6 Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCC-HHHHHHHHHCCCCEEEECCCCCC Q ss_conf 999999769947998078743366889789887420268689996488762-34555554179827996154476 Q gi|254780901|r 112 MMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS-YDALQYATNQGIDVIVIDHHQVK 185 (600) Q Consensus 112 l~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~-~e~i~~a~~~GidvIVtDHH~~~ 185 (600) ..++++.-|.++.+.-++ .+. -...+.++.+...+++.||.+=..... .+.++.|.+.||.||..|-..++ T Consensus 28 ~~ea~~~~G~~l~i~~~~-~d~--~~q~~~i~~~i~~~vDgIii~p~~~~~~~~~i~~a~~~gIPvV~~d~~~~~ 99 (325) T 2x7x_A 28 LREAMFYNGVSVEIRSAG-DDN--SKQAEDVHYFMDEGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDRKILS 99 (325) T ss_dssp HHHHTTSSSCEEEEEECT-TCH--HHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHTTCCEEEESSCCSS T ss_pred HHHHHHCCCCEEEEEECC-CCH--HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCC T ss_conf 999998099889998599-999--999999999998699799996887165799999999869968963765687 No 107 >3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp} Probab=54.92 E-value=8.9 Score=16.49 Aligned_cols=80 Identities=20% Similarity=0.308 Sum_probs=49.3 Q ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHH---------HHHHHHHCCCCEEEEECC Q ss_conf 99779979999407886152899999999976994799807874336688978---------988742026868999648 Q gi|254780901|r 88 AIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS---------LMEKFINEGAQLIITVDC 158 (600) Q Consensus 88 ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~---------~i~~~~~~g~~LiItvD~ 158 (600) ++-++.+|.|| |--+-|+ +++.+..+.+-..-.+|+-|.-.-.||--.+ .++.+.+.|+++|+. =| T Consensus 3 ~~m~~~pIgif-DSGiGGL---tv~~~l~~~lP~~~~iY~~D~~~~PYG~ks~e~i~~~~~~~~~~l~~~~~k~IVi-AC 77 (268) T 3out_A 3 AMLDNRPIGVF-DSGIGGL---TIVKNLMSILPNEDIIYFGDIARIPYGTKSRATIQKFAAQTAKFLIDQEVKAIII-AC 77 (268) T ss_dssp --CTTSCEEEE-ESSSTTH---HHHHHHHHHCTTCCEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHHHTTCSEEEE-CC T ss_pred CCCCCCCEEEE-ECCCCHH---HHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE-EC T ss_conf 64679988999-6897589---9999999988999989997078899898999999999999999998659998999-46 Q ss_pred CCCCHHHHHHHHHC Q ss_conf 87623455555417 Q gi|254780901|r 159 GSTSYDALQYATNQ 172 (600) Q Consensus 159 Gi~~~e~i~~a~~~ 172 (600) -+.+.-..+.+++. T Consensus 78 NTasa~~l~~l~~~ 91 (268) T 3out_A 78 NTISAIAKDIVQEI 91 (268) T ss_dssp HHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHH T ss_conf 83889999999984 No 108 >2iks_A DNA-binding transcriptional dual regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.85A {Escherichia coli K12} Probab=54.80 E-value=9 Score=16.48 Aligned_cols=70 Identities=10% Similarity=0.046 Sum_probs=45.4 Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCC Q ss_conf 9999976994799807874336688978988742026868999648876234555554179827996154476 Q gi|254780901|r 113 MRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185 (600) Q Consensus 113 ~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~~~ 185 (600) .+.++..|.++..+.-+.- .......++.+...+++-+|...+-..+.+.+..+...|+-|+.+|.+.+. T Consensus 43 ~~~a~~~g~~~~l~~~~~~---~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~pvv~~~~~~~~ 112 (293) T 2iks_A 43 ERQARQRGYQLLIACSEDQ---PDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDR 112 (293) T ss_dssp HHHHHHTTCEEEEEECTTC---HHHHHHHHHHHHHTTCSEEEECCSSCTTCHHHHTTTTSSSCEEEEESCCCT T ss_pred HHHHHHCCCEEEEEECCCC---HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCC T ss_conf 9999986999999968999---899999999999669989999536544579999998479828999624787 No 109 >3dzb_A Prephenate dehydrogenase; domain SWAP, PSI2, NYSGXRC, tyrosine biosynthesis, EC:1.3.12.-, structural genomics; 2.46A {Streptococcus thermophilus lmg 18311} Probab=54.45 E-value=9.1 Score=16.44 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=16.1 Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 799799994078861528999999999769947998 Q gi|254780901|r 91 NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126 (600) Q Consensus 91 ~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~ 126 (600) +.++|+|+| + |..+++|.. +|+..|..+..+ T Consensus 4 ~~k~I~IIG---~-GlmG~Sia~-al~~~~~~~~V~ 34 (317) T 3dzb_A 4 SKKTIYIAG---L-GLIGGSLAL-GIKRDHPDYEIL 34 (317) T ss_dssp --CEEEESC---C-SHHHHHHHH-HHHTTCTTSEEE T ss_pred CCCEEEEEE---E-CHHHHHHHH-HHHHCCCCCEEE T ss_conf 888799992---1-889999999-999609998899 No 110 >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Probab=54.20 E-value=9.2 Score=16.41 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=16.5 Q ss_pred HHHCCCCEEEEECCCCCHHHH-HHHHHHHHHHCCCCEEE Q ss_conf 997799799994078861528-99999999976994799 Q gi|254780901|r 88 AIYNSEKIMIFGDYDVDGAAS-VALMMRFLSHCSVNANM 125 (600) Q Consensus 88 ai~~~ekI~I~gDyD~DGits-tail~~~L~~~g~~v~~ 125 (600) ...+...|.|-| ..|=|+ |.+++..|+..|.++.+ T Consensus 108 ~~~~~~vIgVTG---T~GKTTt~~~l~~iL~~~~~~~~~ 143 (451) T 3lk7_A 108 LVSESQLIGITG---SNGKTTTTTMIAEVLNAGGQRGLL 143 (451) T ss_dssp HHCCSEEEEEEC---SSCHHHHHHHHHHHHHHTTCCEEE T ss_pred HHHHCCEEEEEC---CCCCCHHHHHHHHHHHHCCCCCEE T ss_conf 874086899977---778621899999998643344123 No 111 >2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1 Probab=54.01 E-value=5.3 Score=18.24 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=35.5 Q ss_pred CEEEEECC-------CCCHHHHHHHHHHHHHHCCCCEEEE--ECCCCCCCCCCCHHHHHHHHHCCCCEEEEE Q ss_conf 79999407-------8861528999999999769947998--078743366889789887420268689996 Q gi|254780901|r 94 KIMIFGDY-------DVDGAASVALMMRFLSHCSVNANMY--IPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 (600) Q Consensus 94 kI~I~gDy-------D~DGitstail~~~L~~~g~~v~~~--IP~R~~eGYGl~~~~i~~~~~~g~~LiItv 156 (600) -|.+.||- |.-|-.-.++|...|+.+|.++.++ +|+-.. .-.+.+....+.++++|||. T Consensus 9 aiitigdei~~G~~~D~ng~~~~~~L~~~l~~~G~~v~~~~iv~D~~~----~i~~~~~~~~~~~~DlVItt 76 (167) T 2g2c_A 9 AIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEGYD----TVVEAIATALKQGARFIITA 76 (167) T ss_dssp EEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECSSHH----HHHHHHHHHHHTTCSEEEEE T ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCHH----HHHHHHHHHHHCCCCEEEEC T ss_conf 999968833047735787389999999999978968999986267589----99999997652388889966 No 112 >2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} Probab=53.96 E-value=9.2 Score=16.38 Aligned_cols=54 Identities=4% Similarity=-0.083 Sum_probs=24.1 Q ss_pred CHHHCCCHHHHHHHHHHHHHCCC--------CEEEEECCCCCHHHHHHHHHH-HHHHCCCCEEEEE Q ss_conf 95561487999999999997799--------799994078861528999999-9997699479980 Q gi|254780901|r 71 DPLILTDCDKAARRIVQAIYNSE--------KIMIFGDYDVDGAASVALMMR-FLSHCSVNANMYI 127 (600) Q Consensus 71 dP~~l~dm~~A~~ri~~ai~~~e--------kI~I~gDyD~DGitstail~~-~L~~~g~~v~~~I 127 (600) ++..+..+=.-+..+....++++ .|+.. + -.--|=|-+=.+ +.+++|..+.+.= T Consensus 38 s~~ei~~Ll~~A~~lK~~~~~~~~~~~L~gK~v~ll--F-~epSTRTR~SFe~A~~~LGg~~i~l~ 100 (359) T 2w37_A 38 SAAELEYLIDFGLHLKALKKAGIPHHYLEGKNIALL--F-EKSSTRTRSAFTTASIDLGAHPEYLG 100 (359) T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCCCCTTTTCEEEEE--E-SSCCHHHHHHHHHHHHHTTCEEEEEC T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE--E-CCCCCHHHHHHHHHHHHCCCCEEECC T ss_conf 999999999999999988756998745799989999--5-68971069999999998599689888 No 113 >2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A* Probab=53.76 E-value=9.3 Score=16.36 Aligned_cols=84 Identities=19% Similarity=0.368 Sum_probs=54.1 Q ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC---------HHHHHHHHHCCCCEEEEECCC Q ss_conf 97799799994078861528999999999769947998078743366889---------789887420268689996488 Q gi|254780901|r 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN---------PSLMEKFINEGAQLIITVDCG 159 (600) Q Consensus 89 i~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~---------~~~i~~~~~~g~~LiItvD~G 159 (600) +.++..|.|| | -|+-+-+++....+.+-..-.+|+-|...-.||-- .+.++.+.+.|+++||. =|- T Consensus 21 m~~~~pIgvf-D---SGiGGLsv~~~l~~~lP~~~~iY~~D~a~~PYG~ks~eei~~~~~~~~~~L~~~~~~~IVI-ACN 95 (290) T 2vvt_A 21 MSNQEAIGLI-D---SGVGGLTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEMADFLLKKRIKMLVI-ACN 95 (290) T ss_dssp CGGGSCEEEE-E---SSSTTHHHHHHHHHHCTTSCEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHHTTTCSEEEE-CCH T ss_pred CCCCCCEEEE-E---CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE-ECC T ss_conf 4789978999-6---8977799999999978999989993478998898999999999999999999739996999-445 Q ss_pred CCCHHHHHHHHHC-CCCEE Q ss_conf 7623455555417-98279 Q gi|254780901|r 160 STSYDALQYATNQ-GIDVI 177 (600) Q Consensus 160 i~~~e~i~~a~~~-GidvI 177 (600) +++.-.++.+++. .+.+| T Consensus 96 Tasa~al~~lr~~~~vpii 114 (290) T 2vvt_A 96 TATAVALEEIKAALPIPVV 114 (290) T ss_dssp HHHHHHHHHHHHHCSSCEE T ss_pred HHHHHHHHHHHHCCCCCEE T ss_conf 2889999999750899878 No 114 >2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A* Probab=53.21 E-value=9.5 Score=16.30 Aligned_cols=109 Identities=14% Similarity=0.132 Sum_probs=60.7 Q ss_pred CCCEEEEECC-CCC--HHHHH--HHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHH Q ss_conf 9979999407-886--15289--999999997699479980787433668897898874202686899964887623455 Q gi|254780901|r 92 SEKIMIFGDY-DVD--GAASV--ALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDAL 166 (600) Q Consensus 92 ~ekI~I~gDy-D~D--Gitst--ail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i 166 (600) .=||.+.-|. .+| |-.-. .=+.++-+.+|.++.++-|.-..+ -.+.++.+.++|++|||++ |..-.+.+ T Consensus 4 ~~kv~~v~d~G~~~D~~fn~~~~~G~~~~~k~~g~~~~~~e~~~~~d----~~~~i~~~~~~g~dlIi~~--g~~~~~~~ 77 (318) T 2fqx_A 4 DFVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNAKCKYVTASTDAE----YVPSLSAFADENMGLVVAC--GSFLVEAV 77 (318) T ss_dssp CCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTTCEEEEEECCSGGG----HHHHHHHHHHTTCSEEEEE--STTTHHHH T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCHHH----HHHHHHHHHHCCCCEEEEE--CCCCCCHH T ss_conf 75899997789999887889999999999998698599995599899----9999999997799989990--76534688 Q ss_pred H-HHHH-CCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHH Q ss_conf 5-5541-798279961544765556725652378888643344304788 Q gi|254780901|r 167 Q-YATN-QGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAG 213 (600) Q Consensus 167 ~-~a~~-~GidvIVtDHH~~~~~~p~a~aivNP~~~~~~~p~~~l~gaG 213 (600) . .|++ -.+..+++|.... .++.+.-+..+ .+.-.+|+|.- T Consensus 78 ~~~A~~~Pd~~Fv~~d~~~~---~~~Nv~~~~~~----~~e~~ylaG~~ 119 (318) T 2fqx_A 78 IETSARFPKQKFLVIDAVVQ---DRDNVVSAVFG----QNEGSFLVGVA 119 (318) T ss_dssp HHHHHHCTTSCEEEESSCCC---SCTTEEEEEEC----HHHHHHHHHHH T ss_pred HHHHHHCCCCEEEEEECCCC---CCCCEEEEEEC----HHHHHHHHHHH T ss_conf 99999889997999928768---88876677600----55665799999 No 115 >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, acetylation, ATP-binding, DNA-binding; 1.91A {Homo sapiens} Probab=53.12 E-value=9.5 Score=16.29 Aligned_cols=67 Identities=13% Similarity=0.230 Sum_probs=45.2 Q ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECC Q ss_conf 99999779979999407886152899999999976994799807874336688978988742026868999648 Q gi|254780901|r 85 IVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 (600) Q Consensus 85 i~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~ 158 (600) +.+....+++++|| |.-...+.-|++.|+..+..+..+-.+.-.+ --...++.+.+...+++|+.|. T Consensus 39 lL~~~~~~~k~iIF----~~t~~~~~~l~~~L~~~~~~~~~lh~~~~~~---~R~~~l~~f~~g~~~vLVaTd~ 105 (185) T 2jgn_A 39 LLNATGKDSLTLVF----VETKKGADSLEDFLYHEGYACTSIHGDRSQR---DREEALHQFRSGKSPILVATAV 105 (185) T ss_dssp HHHHC-CCSCEEEE----ESCHHHHHHHHHHHHHTTCCEEEEC-----------CHHHHHHHHTSSSEEEEEC- T ss_pred HHHHCCCCCCEEEE----ECCHHHHHHHHHHHHHCCCCEEEEECCCCHH---HHHHHHHHHHCCCCCEEEEECH T ss_conf 99833999948999----7978999999999986799889870899999---9999999986599748985000 No 116 >3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A* Probab=53.06 E-value=9.5 Score=16.28 Aligned_cols=28 Identities=7% Similarity=0.177 Sum_probs=20.7 Q ss_pred CCHHHHHHHHHCCCCEEEECCCCCCCCC Q ss_conf 6234555554179827996154476555 Q gi|254780901|r 161 TSYDALQYATNQGIDVIVIDHHQVKSEE 188 (600) Q Consensus 161 ~~~e~i~~a~~~GidvIVtDHH~~~~~~ 188 (600) ++.++...|.+.|.|.|=+|=|.-.+.. T Consensus 18 NT~~af~~A~~~G~~~iE~DV~lTkDg~ 45 (250) T 3ks6_A 18 STPHGFTATAAMALEEVEFDLHPTADGA 45 (250) T ss_dssp TCHHHHHHHHTSSSSEEEEEEEECTTSC T ss_pred CHHHHHHHHHHCCCCEEEEEEEEECCCC T ss_conf 3499999999859898998789902996 No 117 >2j16_A SDP-1, tyrosine-protein phosphatase YIL113W; hydrolase, hypothetical protein; 2.7A {Saccharomyces cerevisiae} PDB: 2j17_A* 2j16_B Probab=52.42 E-value=9.7 Score=16.21 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=9.4 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 487999999999997799799994 Q gi|254780901|r 76 TDCDKAARRIVQAIYNSEKIMIFG 99 (600) Q Consensus 76 ~dm~~A~~ri~~ai~~~ekI~I~g 99 (600) .+++++++.|.+|++++++|+|+. T Consensus 101 ~~~~~~~~fI~~~~~~g~~VLVHC 124 (182) T 2j16_A 101 LDLPSLTSIIHAATTKREKILIHA 124 (182) T ss_dssp GGHHHHHHHHHHHHHTTCCEEEEE T ss_pred HHHHHHHHHHHHHHHCCCEEEEEC T ss_conf 999999999999998599399989 No 118 >2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B Probab=52.08 E-value=9.8 Score=16.18 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=11.6 Q ss_pred CCEEECCCCHHHHHHHHHHHH Q ss_conf 314642221588999999999 Q gi|254780901|r 444 AGLTVERVNFGRLCDFFQKFA 464 (600) Q Consensus 444 aG~ti~~~~l~~f~~~l~~~~ 464 (600) .|+-.|+-..+.+.+.+.++. T Consensus 105 ~~~l~KP~~~~~L~~~l~~~~ 125 (133) T 2r25_B 105 NGFLSKPIKRPKLKTILTEFC 125 (133) T ss_dssp SEEEESSCCHHHHHHHHHHHC T ss_pred CEEEECCCCHHHHHHHHHHHH T ss_conf 889979899999999999999 No 119 >3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Probab=52.05 E-value=9.8 Score=16.16 Aligned_cols=87 Identities=11% Similarity=0.200 Sum_probs=48.1 Q ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHH---HHCCCCEE-EEECCCCCCCCCCC-H------HHHHHH-HHCCCCEEEE- Q ss_conf 9779979999407886152899999999---97699479-98078743366889-7------898874-2026868999- Q gi|254780901|r 89 IYNSEKIMIFGDYDVDGAASVALMMRFL---SHCSVNAN-MYIPDRIVDGYGPN-P------SLMEKF-INEGAQLIIT- 155 (600) Q Consensus 89 i~~~ekI~I~gDyD~DGitstail~~~L---~~~g~~v~-~~IP~R~~eGYGl~-~------~~i~~~-~~~g~~LiIt- 155 (600) ++.+++|+|-- --|.-|+++|.-+. +..+.++. .||-| |+- . ..++++ .+.|+.+.+. T Consensus 15 ~~~~~~v~va~---SGG~DS~~Ll~~l~~~~~~~~~~~~~~hvnh------~lr~~~s~~~~~~~~~~~~~~~i~~~~~~ 85 (464) T 3a2k_A 15 LSEGAAVIVGV---SGGPDSLALLHVFLSLRDEWKLQVIAAHVDH------MFRGRESEEEMEFVKRFCVERRILCETAQ 85 (464) T ss_dssp SSCSSBEEEEC---CSSHHHHHHHHHHHHHHHTTTCBCEEEEEEC------TTCTHHHHHHHHHHHHHHHHTTCEEEEEE T ss_pred CCCCCEEEEEE---CCHHHHHHHHHHHHHHHHHCCCEEEEEEEEC------CCCCCCHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 99839899998---0719999999999998897298599999779------89986669999999999998499199999 Q ss_pred ECC------CCCCHHH----------HHHHHHCCCCEEEECCCCC Q ss_conf 648------8762345----------5555417982799615447 Q gi|254780901|r 156 VDC------GSTSYDA----------LQYATNQGIDVIVIDHHQV 184 (600) Q Consensus 156 vD~------Gi~~~e~----------i~~a~~~GidvIVtDHH~~ 184 (600) +|. ...+.++ .+.|++.|.++|+|=||.- T Consensus 86 ~~~~~~~~~~~~~~e~~aR~~Ry~~~~~~~~~~~~~~i~~aHh~d 130 (464) T 3a2k_A 86 IDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGD 130 (464) T ss_dssp CCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHH T ss_pred EEEEHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC T ss_conf 860011025898989999999987641233345631587542047 No 120 >2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis} Probab=51.89 E-value=9.9 Score=16.15 Aligned_cols=81 Identities=17% Similarity=0.383 Sum_probs=50.8 Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC---------CHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 9979999407886152899999999976994799807874336688---------9789887420268689996488762 Q gi|254780901|r 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP---------NPSLMEKFINEGAQLIITVDCGSTS 162 (600) Q Consensus 92 ~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl---------~~~~i~~~~~~g~~LiItvD~Gi~~ 162 (600) +.+|.|| |- |+-+-+++.+..+.+-..-.+|+-|...-.||- ..+.++.+.+.|+++|+ +=|-+.+ T Consensus 3 ~~pIgvf-DS---GiGGLtv~~~l~~~~P~~~~iY~~D~a~~PYG~ks~~~i~~~~~~~~~~l~~~~~~~IV-iACNTas 77 (267) T 2gzm_A 3 NRAIGVI-DS---GVGGLTVAKELIRQLPKERIIYLGDTARCPYGPRSREEVRQFTWEMTEHLLDLNIKMLV-IACNTAT 77 (267) T ss_dssp TSCEEEE-ES---SSTTHHHHHHHHHHCTTSCEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHHTTTCSEEE-ECCHHHH T ss_pred CCCEEEE-EC---CCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE-EECCCHH T ss_conf 9978999-78---95679999999997899998999558889989999999999999999999866998999-9077378 Q ss_pred HHHHHHHHHC-CCCEE Q ss_conf 3455555417-98279 Q gi|254780901|r 163 YDALQYATNQ-GIDVI 177 (600) Q Consensus 163 ~e~i~~a~~~-GidvI 177 (600) .-..+.+++. .+.+| T Consensus 78 ~~a~~~l~~~~~~pii 93 (267) T 2gzm_A 78 AVVLEEMQKQLPIPVV 93 (267) T ss_dssp HHHHHHHHHHCSSCEE T ss_pred HHHHHHHHHHCCCCEE T ss_conf 9999999973898774 No 121 >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum 3D7} SCOP: c.1.2.2 Probab=51.73 E-value=9.9 Score=16.13 Aligned_cols=11 Identities=9% Similarity=0.229 Sum_probs=5.0 Q ss_pred CHHHHHHHHHH Q ss_conf 87999999999 Q gi|254780901|r 77 DCDKAARRIVQ 87 (600) Q Consensus 77 dm~~A~~ri~~ 87 (600) ++++.++++.+ T Consensus 19 ~l~~~i~~l~~ 29 (227) T 1tqx_A 19 KLAEETQRMES 29 (227) T ss_dssp GHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999997 No 122 >3i45_A Twin-arginine translocation pathway signal protein; structural genomics, protein structure initiative; 1.36A {Rhodospirillum rubrum atcc 11170} Probab=51.69 E-value=10 Score=16.12 Aligned_cols=38 Identities=5% Similarity=0.150 Sum_probs=23.2 Q ss_pred HHHHH-HCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEE Q ss_conf 88742-026868999648876234555554179827996 Q gi|254780901|r 142 MEKFI-NEGAQLIITVDCGSTSYDALQYATNQGIDVIVI 179 (600) Q Consensus 142 i~~~~-~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVt 179 (600) .+++. ++++..||...|..+.......+.+.++-+|.. T Consensus 65 ~~~li~~~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~ 103 (387) T 3i45_A 65 AQELLTRHGVHALAGTFLSHVGLAVSDFARQRKVLFMAS 103 (387) T ss_dssp HHHHHHHHCCSEEEECCSHHHHHHHHHHHHHHTCCEEEC T ss_pred HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCC T ss_conf 999996289779994153388999999999838863346 No 123 >2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A Probab=51.63 E-value=10 Score=16.12 Aligned_cols=91 Identities=25% Similarity=0.366 Sum_probs=40.6 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHH----HCCC Q ss_conf 148799999999999779979999407886152899999999976994799807874336688978988742----0268 Q gi|254780901|r 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFI----NEGA 150 (600) Q Consensus 75 l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~----~~g~ 150 (600) |-|+----+... --++-+|+++||. .-...... ...+..+|.++.+.-|. +|.+.....+... +.|. T Consensus 133 LlDl~Ti~e~~g--~l~gl~i~~vGd~-~~~~~~s~--~~~~~~~g~~v~~~~P~----~~~~~~~~~~~~~~~~~~~~~ 203 (307) T 2i6u_A 133 LADLQTIAERKG--ALRGLRLSYFGDG-ANNMAHSL--LLGGVTAGIHVTVAAPE----GFLPDPSVRAAAERRAQDTGA 203 (307) T ss_dssp HHHHHHHHHHHS--CCTTCEEEEESCT-TSHHHHHH--HHHHHHTTCEEEEECCT----TSCCCHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHC--CCCCCEEEEECCC-CCCHHHHH--HHHHHHCCCEEEECCCC----CCCCCHHHHHHHHHHHHHCCC T ss_conf 999999999858--9789889997788-87715079--99998669858725872----348888999999988886188 Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCC Q ss_conf 689996488762345555541798279961544 Q gi|254780901|r 151 QLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 (600) Q Consensus 151 ~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~ 183 (600) ..-++-| .++ .-.|.||++||-.. T Consensus 204 ~~~~~~~-----~~~----~~~~aDvv~~~~~~ 227 (307) T 2i6u_A 204 SVTVTAD-----AHA----AAAGADVLVTDTWT 227 (307) T ss_dssp CEEEESC-----HHH----HHTTCSEEEECCSS T ss_pred CEEEECC-----HHH----HHCCCCEEEEEEEE T ss_conf 5189646-----888----86489889975215 No 124 >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Probab=51.54 E-value=10 Score=16.11 Aligned_cols=79 Identities=18% Similarity=0.280 Sum_probs=47.8 Q ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC--CHHHHHHHHHCCCCEEEEECCCCCCHHHHH Q ss_conf 779979999407886152899999999976994799807874336688--978988742026868999648876234555 Q gi|254780901|r 90 YNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGP--NPSLMEKFINEGAQLIITVDCGSTSYDALQ 167 (600) Q Consensus 90 ~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl--~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~ 167 (600) ..+.||+|.| +-|-.+.+++-..++ -|.+|...+ |-..+... ....++.+...|++++ ..|. .+.+.+. T Consensus 2 ~~k~kILVtG---atG~iG~~lv~~Ll~-~g~~V~~l~--R~~~~~~~~~~~~~~~~l~~~gv~v~-~~D~--~d~~~l~ 72 (308) T 1qyc_A 2 GSRSRILLIG---ATGYIGRHVAKASLD-LGHPTFLLV--RESTASSNSEKAQLLESFKASGANIV-HGSI--DDHASLV 72 (308) T ss_dssp CCCCCEEEES---TTSTTHHHHHHHHHH-TTCCEEEEC--CCCCTTTTHHHHHHHHHHHTTTCEEE-CCCT--TCHHHHH T ss_pred CCCCEEEEEC---CCCHHHHHHHHHHHH-CCCEEEEEE--CCCCCCCCHHHHHHHHHHCCCCCEEE-EEEC--CCHHHHH T ss_conf 8999799989---883899999999997-889699998--88865556777777776503895899-9646--5435568 Q ss_pred HHHHCCCCEEE Q ss_conf 55417982799 Q gi|254780901|r 168 YATNQGIDVIV 178 (600) Q Consensus 168 ~a~~~GidvIV 178 (600) .+- .|+|+++ T Consensus 73 ~a~-~~~d~v~ 82 (308) T 1qyc_A 73 EAV-KNVDVVI 82 (308) T ss_dssp HHH-HTCSEEE T ss_pred HHH-HHCEEEE T ss_conf 875-2041576 No 125 >3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A* Probab=51.40 E-value=10 Score=16.09 Aligned_cols=61 Identities=18% Similarity=0.215 Sum_probs=34.2 Q ss_pred HHHCCCCEEEEECCCCCCCC-CCCHHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHHCCCCEE Q ss_conf 99769947998078743366-88978988742026--8689996488762345555541798279 Q gi|254780901|r 116 LSHCSVNANMYIPDRIVDGY-GPNPSLMEKFINEG--AQLIITVDCGSTSYDALQYATNQGIDVI 177 (600) Q Consensus 116 L~~~g~~v~~~IP~R~~eGY-Gl~~~~i~~~~~~g--~~LiItvD~Gi~~~e~i~~a~~~GidvI 177 (600) -+..+.+|...||-+-.|.| +-..+.+..+.... ..-||.||.||++.- .+.+++.+-.++ T Consensus 89 ~~~~~~~vSvviP~~Ne~~~i~~~l~si~~~~~~~~~~~EiIVVDDgStD~T-~~i~~~~~a~v~ 152 (387) T 3f1y_A 89 KRELGLTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQILVVDADSEDGT-AGVAASHGAEVY 152 (387) T ss_dssp HHHHTCCEEEEEEESSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCSSSH-HHHHHHTTCEEE T ss_pred HCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCH-HHHHHHHHCCCC T ss_conf 2468991899982788878899999999997556799769999989598528-999998614215 No 126 >1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A Probab=50.90 E-value=9.5 Score=16.27 Aligned_cols=60 Identities=13% Similarity=0.132 Sum_probs=31.4 Q ss_pred HCCCHHHHHHHHHHHHHCCCCEEEEECCCCCH---------HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC Q ss_conf 61487999999999997799799994078861---------52899999999976994799807874336688 Q gi|254780901|r 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG---------AASVALMMRFLSHCSVNANMYIPDRIVDGYGP 137 (600) Q Consensus 74 ~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DG---------itstail~~~L~~~g~~v~~~IP~R~~eGYGl 137 (600) .|..++ ...+++++++.|.|+-|.|-.+ ......+....+..+.-++.-++...-+-.|| T Consensus 11 ~f~~Ie----~ai~al~~G~~Viv~Dd~dRE~EgDlv~~Ae~~t~e~i~fm~~~~~Glic~a~~~~~~~~L~L 79 (233) T 1k4i_A 11 NFDAIP----DVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPERTTALDL 79 (233) T ss_dssp -CCCHH----HHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHHBCSCCEEEECHHHHHHTTC T ss_pred CCCCHH----HHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEEECHHHHHCCCC T ss_conf 486199----999999889969999679988751589786769999999999968986899648888712688 No 127 >3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} Probab=50.53 E-value=8.9 Score=16.49 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=13.7 Q ss_pred CCHHHHHHHHHCCCCEEEECCCCCCC Q ss_conf 62345555541798279961544765 Q gi|254780901|r 161 TSYDALQYATNQGIDVIVIDHHQVKS 186 (600) Q Consensus 161 ~~~e~i~~a~~~GidvIVtDHH~~~~ 186 (600) +..++++.+.+.-.|+||+|.+.|.- T Consensus 46 ~~~eAl~~l~~~~~dlvi~D~~mP~~ 71 (153) T 3hv2_A 46 DATQALQLLASREVDLVISAAHLPQM 71 (153) T ss_dssp SHHHHHHHHHHSCCSEEEEESCCSSS T ss_pred CHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 99999999872799999983678899 No 128 >2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* Probab=50.52 E-value=10 Score=15.99 Aligned_cols=84 Identities=11% Similarity=0.123 Sum_probs=47.1 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCCCCCCCCHHHHHHHHHCCCCEEEE Q ss_conf 799999999999779979999407886152899999999976994799807--874336688978988742026868999 Q gi|254780901|r 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIP--DRIVDGYGPNPSLMEKFINEGAQLIIT 155 (600) Q Consensus 78 m~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP--~R~~eGYGl~~~~i~~~~~~g~~LiIt 155 (600) -+..++++.+.+.+.++.+|+...-+...-+...+.++.+.+++-+..-.. .++.+.|...........-..+++++. T Consensus 197 ~~~~~~~~~~~l~~akrpvii~G~~~~~~~a~~~l~~la~~~~~pv~~t~~~~~~~~~~~~~~~g~~~~~~~~~~D~vl~ 276 (564) T 2q28_A 197 CPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQIPFLPMSMAKGILEDTHPLSAAAARSFALANADVVML 276 (564) T ss_dssp CHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCEEECGGGTTSSCTTCTTBCGGGHHHHHHHCSEEEE T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHCEE T ss_conf 98999999999972799889990572323259999999997589964452113145776654433320001040221100 Q ss_pred ECCCCC Q ss_conf 648876 Q gi|254780901|r 156 VDCGST 161 (600) Q Consensus 156 vD~Gi~ 161 (600) +..-.. T Consensus 277 ~g~~~~ 282 (564) T 2q28_A 277 VGARLN 282 (564) T ss_dssp ESCCCS T ss_pred CCCCCC T ss_conf 156544 No 129 >2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A* Probab=50.33 E-value=10 Score=15.97 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=29.7 Q ss_pred HHHHHHHHHHHHCCCCEEEE--ECCCCCCCCCCCHHHHHH-HHHCCCCEEEEE Q ss_conf 28999999999769947998--078743366889789887-420268689996 Q gi|254780901|r 107 ASVALMMRFLSHCSVNANMY--IPDRIVDGYGPNPSLMEK-FINEGAQLIITV 156 (600) Q Consensus 107 tstail~~~L~~~g~~v~~~--IP~R~~eGYGl~~~~i~~-~~~~g~~LiItv 156 (600) |++..|...|+..|.+|.++ +|+...+ -.+++.. .....+++|||. T Consensus 40 ~ng~~L~~~L~~~G~~v~~~~~v~Dd~~~----i~~al~~~~~~~~~dlVitt 88 (178) T 2pjk_A 40 ESGDIIKQLLIENGHKIIGYSLVPDDKIK----ILKAFTDALSIDEVDVIIST 88 (178) T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECSCHHH----HHHHHHHHHTCTTCCEEEEE T ss_pred CHHHHHHHHHHHCCCEEEEEEEECCCHHH----HHHHHHHHHHCCCCCEEECC T ss_conf 56999999999889989898785999999----99999999865488678325 No 130 >2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus} Probab=49.63 E-value=11 Score=15.89 Aligned_cols=81 Identities=20% Similarity=0.380 Sum_probs=50.0 Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC---------HHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 99799994078861528999999999769947998078743366889---------789887420268689996488762 Q gi|254780901|r 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN---------PSLMEKFINEGAQLIITVDCGSTS 162 (600) Q Consensus 92 ~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~---------~~~i~~~~~~g~~LiItvD~Gi~~ 162 (600) +++|.|| |- |+-+-+++.+..+.+-..-.+|+-|...-.||-- .+.++.+.+.|+++|+. =|-+.+ T Consensus 22 n~PIgvf-DS---GvGGLtvl~~l~~~lP~~~~iY~~D~~~~PYG~ks~eei~~~~~~~~~~L~~~g~~~iVI-ACNTAs 96 (286) T 2jfq_A 22 NKPIGVI-DS---GVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLMEFDIKMLVI-ACNTAT 96 (286) T ss_dssp CSCEEEE-ES---SSTTHHHHHHHHHHCTTCCEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCSEEEE-CCHHHH T ss_pred CCCEEEE-EC---CCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE-CCCCHH T ss_conf 9988999-78---977799999999978999989994588898888999999999999999998669999998-167589 Q ss_pred HHHHHHHHH-CCCCEE Q ss_conf 345555541-798279 Q gi|254780901|r 163 YDALQYATN-QGIDVI 177 (600) Q Consensus 163 ~e~i~~a~~-~GidvI 177 (600) .-+++.+++ ..+.+| T Consensus 97 ~~al~~l~~~~~ipii 112 (286) T 2jfq_A 97 AVALEYLQKTLSISVI 112 (286) T ss_dssp HHHHHHHHHHCSSEEE T ss_pred HHHHHHHHHHCCCCEE T ss_conf 9999999986699889 No 131 >1vkf_A Glycerol uptake operon antiterminator-related protein; TM1436, structural genomics, JCSG, PSI, protein structure initiative; HET: CIT; 1.65A {Thermotoga maritima MSB8} SCOP: c.1.29.1 Probab=49.60 E-value=11 Score=15.89 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=50.9 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEE----EECC Q ss_conf 528999999999769947998078743366889789887420268689996488762345555541798279----9615 Q gi|254780901|r 106 AASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVI----VIDH 181 (600) Q Consensus 106 itstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvI----VtDH 181 (600) +..-.=+.+.++.-|..+..++- +-+|-|-.+.+++.+++-+++=||| |-..-|..|+++|+-+| ++|- T Consensus 42 I~~L~~iv~~~k~~gK~vfVHiD--LI~GL~~D~~avefLk~~~~dGIIS-----Tk~~~I~~Ak~~Gl~tIqRvFliDS 114 (188) T 1vkf_A 42 ILNLKFHLKILKDRGKTVFVDMD--FVNGLGEGEEAILFVKKAGADGIIT-----IKPKNYVVAKKNGIPAVLRFFALDS 114 (188) T ss_dssp TTTHHHHHHHHHHTTCEEEEEGG--GEETCCSSHHHHHHHHHHTCSEEEE-----SCHHHHHHHHHTTCCEEEEEECCSH T ss_pred HHHHHHHHHHHHHCCCEEEEEEE--CCCCCCCCHHHHHHHHHCCCCEEEE-----CCHHHHHHHHHCCCEEEEEEEEEEH T ss_conf 88999999999986998999863--1778789879999999769999996-----8899999999869969999877646 Q ss_pred CCC Q ss_conf 447 Q gi|254780901|r 182 HQV 184 (600) Q Consensus 182 H~~ 184 (600) +.. T Consensus 115 ~al 117 (188) T 1vkf_A 115 KAV 117 (188) T ss_dssp HHH T ss_pred HHH T ss_conf 789 No 132 >2pw9_A Putative formate dehydrogenase accessory protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Desulfotalea psychrophila LSV54} SCOP: c.97.1.5 Probab=49.49 E-value=11 Score=15.88 Aligned_cols=15 Identities=13% Similarity=0.206 Sum_probs=6.7 Q ss_pred EEEEECCCCCCHHHHH Q ss_conf 9998648986188888 Q gi|254780901|r 410 IGSGRSIEGFDIGKMV 425 (600) Q Consensus 410 kGS~RSi~g~~l~~~l 425 (600) .|-+|. +.+++|.-- T Consensus 241 igf~R~-~r~~iYs~~ 255 (268) T 2pw9_A 241 VAYSRP-ERINVFNAP 255 (268) T ss_dssp EEEEET-TEEEEEECG T ss_pred EEEECC-CCEEEEECC T ss_conf 999659-958999488 No 133 >1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, glycerol complex; 1.30A {Thermus thermophilus HB8} SCOP: c.1.18.3 PDB: 1v8e_A Probab=48.96 E-value=11 Score=15.82 Aligned_cols=29 Identities=14% Similarity=0.336 Sum_probs=21.6 Q ss_pred CCHHHHHHHHHCCCCEEEECCCCCCCCCC Q ss_conf 62345555541798279961544765556 Q gi|254780901|r 161 TSYDALQYATNQGIDVIVIDHHQVKSEEI 189 (600) Q Consensus 161 ~~~e~i~~a~~~GidvIVtDHH~~~~~~p 189 (600) ++.++.+.|.+.|.|.|=+|=+.-.+..| T Consensus 23 NT~~af~~A~~~G~~~iE~Dv~~TkDg~~ 51 (224) T 1vd6_A 23 NTLESFRLALEAGLDGVELDVWPTRDGVF 51 (224) T ss_dssp TSHHHHHHHHHTTCSEEEEEEEECTTSCE T ss_pred CHHHHHHHHHHCCCCEEEEEEEEECCCCE T ss_conf 16999999998597989998889159985 No 134 >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Probab=48.81 E-value=11 Score=15.80 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=13.3 Q ss_pred HHHHHHHCCC----CEEEEECCCCCC Q ss_conf 9999997699----479980787433 Q gi|254780901|r 112 MMRFLSHCSV----NANMYIPDRIVD 133 (600) Q Consensus 112 l~~~L~~~g~----~v~~~IP~R~~e 133 (600) ..+.|..+|. +.-+|.|.|..| T Consensus 127 ~a~~L~klGI~tv~DLL~~~P~rY~D 152 (780) T 1gm5_A 127 RKKKLKKLGIETLRDLLEFFPRDYED 152 (780) T ss_dssp HHHHHHTTTCCSSGGGTSCCCSEEEC T ss_pred HHHHHHHCCCCCHHHHHHCCCCCEEE T ss_conf 99999976999699997559995597 No 135 >1vp8_A Hypothetical protein AF0103; NP_068944.1, structural genomics, JCSG, joint center for structural genomics, PSI; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus dsm 4304} SCOP: c.49.1.2 Probab=48.58 E-value=11 Score=15.78 Aligned_cols=40 Identities=30% Similarity=0.574 Sum_probs=23.9 Q ss_pred HHHHHHCCCC-EEEEECCCCCCHHHHHHHHHCCCCEEEECCCC Q ss_conf 8874202686-89996488762345555541798279961544 Q gi|254780901|r 142 MEKFINEGAQ-LIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 (600) Q Consensus 142 i~~~~~~g~~-LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~ 183 (600) ++++.+.|.+ +++.--.|-++....+..+ |+++||.-||. T Consensus 36 ~erA~e~gIk~iVVASssG~TA~k~~e~~k--g~~lVvVth~~ 76 (201) T 1vp8_A 36 VERAKELGIKHLVVASSYGDTAMKALEMAE--GLEVVVVTYHT 76 (201) T ss_dssp HHHHHHHTCCEEEEECSSSHHHHHHHHHCT--TCEEEEEECCT T ss_pred HHHHHHCCCCEEEEECCCCHHHHHHHHHHC--CCCEEEEECCC T ss_conf 999998699779997088669999999745--98299995636 No 136 >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genomics, SGC stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B Probab=47.54 E-value=11 Score=15.66 Aligned_cols=91 Identities=14% Similarity=0.182 Sum_probs=39.5 Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCC-- Q ss_conf 999999997799799994078861528999999999769947998078743366889789887420268689996488-- Q gi|254780901|r 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG-- 159 (600) Q Consensus 82 ~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~G-- 159 (600) +.-+...+..+..|.+.. ++=|-| ..++.+.+..+|.++.++-+. ..+.++.+...++++|..=-.+ T Consensus 95 i~~~l~~l~~gd~iv~~~--~~yg~t-~~~~~~~l~~~gi~~~~~d~~--------d~~~~~~~i~~~t~lv~~EspsNP 163 (403) T 3cog_A 95 TVTITHLLKAGDQIICMD--DVYGGT-NRYFRQVASEFGLKISFVDCS--------KIKLLEAAITPETKLVWIETPTNP 163 (403) T ss_dssp HHHHHTTSCTTCEEEEES--SCCHHH-HHHHHHTGGGGTCEEEEECTT--------SHHHHHHHCCTTEEEEEEESSCTT T ss_pred HHHHHHHHHCCCEEEEEC--CCCCCH-HHHHHHHHHCCCEEEEEECCC--------CHHHHHHHCCCCCCEEEEECCCCC T ss_conf 999999973799799925--743220-245666664184599992366--------449999854889868999889998 Q ss_pred ---CCCHHHHH-HHHHCCCCEEEECCCC Q ss_conf ---76234555-5541798279961544 Q gi|254780901|r 160 ---STSYDALQ-YATNQGIDVIVIDHHQ 183 (600) Q Consensus 160 ---i~~~e~i~-~a~~~GidvIVtDHH~ 183 (600) +.+.+++. .|++.|.-++|+|.-- T Consensus 164 ~l~v~Di~~ia~la~~~g~~~~vvDNT~ 191 (403) T 3cog_A 164 TQKVIDIEGCAHIVHKHGDIILVVDNTF 191 (403) T ss_dssp TCCCCCHHHHHHHHTSSSCCEEEEECTT T ss_pred CCCCCCCHHHHHHHHHCCCCEEEEECCC T ss_conf 7702583888788761588659998986 No 137 >1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1* Probab=47.43 E-value=11 Score=15.65 Aligned_cols=23 Identities=17% Similarity=0.060 Sum_probs=14.9 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCC Q ss_conf 8999999999769947998078743366889 Q gi|254780901|r 108 SVALMMRFLSHCSVNANMYIPDRIVDGYGPN 138 (600) Q Consensus 108 stail~~~L~~~g~~v~~~IP~R~~eGYGl~ 138 (600) +..+++..|..+ -||=+|+.|+. T Consensus 12 ~~~~l~~gL~~L--------QHRGqDsaGIa 34 (459) T 1ao0_A 12 APQITYYGLHSL--------QHRGQEGAGIV 34 (459) T ss_dssp HHHHHHHHHHHT--------GGGCCSEEEEE T ss_pred CHHHHHHHHHHH--------HCCCCCCCEEE T ss_conf 199999999986--------14673434599 No 138 >1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A* Probab=47.39 E-value=11 Score=15.65 Aligned_cols=43 Identities=26% Similarity=0.332 Sum_probs=28.2 Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHH Q ss_conf 79999407886152899999999976994799807874336688978 Q gi|254780901|r 94 KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPS 140 (600) Q Consensus 94 kI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~ 140 (600) ||.|| |--+-|+| ++....+.+...-.+|+-+...-.||-... T Consensus 2 kIgvf-DSGiGGlt---v~~~l~~~~p~~~~iy~~D~~~~PYG~ks~ 44 (254) T 1b73_A 2 KIGIF-DSGVGGLT---VLKAIRNRYRKVDIVYLGDTARVPYGIRSK 44 (254) T ss_dssp EEEEE-ESSSGGGT---HHHHHHHHSTTCEEEEEECTTTCCCTTSCH T ss_pred EEEEE-ECCCCHHH---HHHHHHHHCCCCCEEEEECCCCCCCCCCCH T ss_conf 79999-48986799---999999978999889994688899998999 No 139 >3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM glucanase, carbohydrate metabolism, cellulose degradation, glycosidase; HET: BTB; 2.10A {Clostridium cellulovorans} Probab=47.09 E-value=12 Score=15.61 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=17.0 Q ss_pred HHHHHHHCCCCEEEECCCCC Q ss_conf 55555417982799615447 Q gi|254780901|r 165 ALQYATNQGIDVIVIDHHQV 184 (600) Q Consensus 165 ~i~~a~~~GidvIVtDHH~~ 184 (600) -|++|+++||.|||+=||.+ T Consensus 91 vId~a~~~Gi~viLdlH~~~ 110 (515) T 3icg_A 91 IANYAFDNDMYVIINLHHEN 110 (515) T ss_dssp HHHHHHTTTCEEEEECCSCT T ss_pred HHHHHHHCCCEEEEECCCCC T ss_conf 99999978999999677788 No 140 >3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* Probab=47.05 E-value=9.8 Score=16.17 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=7.6 Q ss_pred CEEEEECCCCCHHHHHHHHHHH Q ss_conf 7999940788615289999999 Q gi|254780901|r 94 KIMIFGDYDVDGAASVALMMRF 115 (600) Q Consensus 94 kI~I~gDyD~DGitstail~~~ 115 (600) +|+|..|-|+||.-=..+|..| T Consensus 121 kIiImTDADvDGsHI~~LLlnf 142 (268) T 3k9f_C 121 KIIIMTDADTDGAHIQTLLLTF 142 (268) T ss_dssp EEEEECCSSHHHHHHHHHHHHH T ss_pred EEEEEECCCCCHHHHHHHHHHH T ss_conf 4899827998858899999999 No 141 >2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structural genomics, NPPSFA; 1.64A {Thermus thermophilus HB8} Probab=46.55 E-value=12 Score=15.55 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=30.7 Q ss_pred HHHHHHHHHHHHCCCCEEEE--ECCCCCCCCCCCHHHHHHHH-HCCCCEEEEE Q ss_conf 28999999999769947998--07874336688978988742-0268689996 Q gi|254780901|r 107 ASVALMMRFLSHCSVNANMY--IPDRIVDGYGPNPSLMEKFI-NEGAQLIITV 156 (600) Q Consensus 107 tstail~~~L~~~g~~v~~~--IP~R~~eGYGl~~~~i~~~~-~~g~~LiItv 156 (600) +++..|.+.|+..|.++..+ +|+-.. .-.+++.++. ..++++|||. T Consensus 21 ~ng~~l~~~L~~~G~~v~~~~iv~Dd~~----~i~~~l~~~~~~~~~DlVitt 69 (164) T 2is8_A 21 TTHLAIREVLAGGPFEVAAYELVPDEPP----MIKKVLRLWADREGLDLILTN 69 (164) T ss_dssp CHHHHHHHHHTTSSEEEEEEEEECSCHH----HHHHHHHHHHHTSCCSEEEEE T ss_pred CCHHHHHHHHHHCCCEEEEEEEECCCHH----HHHHHHHHHHHCCCCCEEEEC T ss_conf 5099999999968998989999798889----999999999845498689967 No 142 >1lci_A Luciferase; oxidoreductase, monooxygenase, photoprotein, luminescence; 2.00A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A Probab=46.40 E-value=12 Score=15.54 Aligned_cols=101 Identities=10% Similarity=0.044 Sum_probs=59.2 Q ss_pred HHCCCHHHHHHHHHHHH-----HCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHH-H Q ss_conf 56148799999999999-----77997999940788615289999999997699479980787433668897898874-2 Q gi|254780901|r 73 LILTDCDKAARRIVQAI-----YNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF-I 146 (600) Q Consensus 73 ~~l~dm~~A~~ri~~ai-----~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~-~ 146 (600) ..+.++.+.+.++..++ +.+.+|+|+++-..|-+ +..-++-.+|+-+.. |+.+ ++.+.+..+ . T Consensus 51 lTy~eL~~~~~~~A~~L~~~Gv~~Gd~Vai~~~n~~~~~----~~~lA~~~~G~v~vp-i~~~------~~~~~l~~~l~ 119 (550) T 1lci_A 51 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFF----MPVLGALFIGVAVAP-ANDI------YNERELLNSMN 119 (550) T ss_dssp EEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTH----HHHHHHHHHTCEEEE-CCTT------CCHHHHHHHHH T ss_pred EEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHH----HHHHHHHHHCCEEEE-CCCC------CCHHHHHHHHH T ss_conf 519999999999999999749599799999908979999----999999985919995-4998------89999999998 Q ss_pred HCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCC Q ss_conf 02686899964887623455555417982799615447 Q gi|254780901|r 147 NEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 (600) Q Consensus 147 ~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~~ 184 (600) ..+++++||-|.......++......-..+|+.|++.. T Consensus 120 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 157 (550) T 1lci_A 120 ISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD 157 (550) T ss_dssp HHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSC T ss_pred HCCCEEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCC T ss_conf 42982999962146766544430776227997167765 No 143 >1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 1w24_A 2r17_A Probab=46.27 E-value=12 Score=15.52 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=12.2 Q ss_pred HHHHCCCCEEEECC-CCCCCCCCCCEEEECC Q ss_conf 55417982799615-4476555672565237 Q gi|254780901|r 168 YATNQGIDVIVIDH-HQVKSEEIPAYALVNP 197 (600) Q Consensus 168 ~a~~~GidvIVtDH-H~~~~~~p~a~aivNP 197 (600) .+++.+.|+++.=| |.|.-.......++|| T Consensus 112 ~~~~~~~divi~GHTH~p~~~~~~~~~iiNP 142 (192) T 1z2w_A 112 LQRQFDVDILISGHTHKFEAFEHENKFYINP 142 (192) T ss_dssp HHHHHSSSEEECCSSCCCEEEEETTEEEEEC T ss_pred HHHHCCCCEEEECCCCCCEEEEECCEEEEEC T ss_conf 9873589989978878503899999999979 No 144 >2g8l_A 287AA long hypothetical protein; 3258004, structural genomics, PSI, protein structure initiative, joint center for structural genomics; 2.04A {Pyrococcus horikoshii} SCOP: e.50.1.1 Probab=46.24 E-value=12 Score=15.52 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=11.5 Q ss_pred EEEECHHHCCHHHHHHHHHCCCCCCCCCCCEEEE Q ss_conf 0443468979999999985184678999846842 Q gi|254780901|r 480 DGVLNASAVNIALIDMLESAGPYGAGNPNPVFAF 513 (600) Q Consensus 480 D~el~~~~i~~~l~~~L~~lePFG~gNpeP~F~~ 513 (600) |..+.-.+-|.+. | ..+ ++.|+|++ T Consensus 247 DLVIaKG~gNyE~---L---~~~---~~~~i~~L 271 (299) T 2g8l_A 247 DVIIAKGQGNFET---L---SEI---NDSRIFFL 271 (299) T ss_dssp SEEEEEHHHHHHH---H---TTS---CCTTEEEE T ss_pred CEEEEECCCHHHH---H---HCC---CCCCEEEE T ss_conf 9999906626767---6---248---98888633 No 145 >1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B Probab=45.77 E-value=12 Score=15.47 Aligned_cols=61 Identities=10% Similarity=0.139 Sum_probs=36.5 Q ss_pred EEEEECCCCCHH---HHHHHHHHHHHHCCCCEEEE--ECCCCCCCCCCCHHHHHH-HHHCCCCEEEEECCCCCCH Q ss_conf 999940788615---28999999999769947998--078743366889789887-4202686899964887623 Q gi|254780901|r 95 IMIFGDYDVDGA---ASVALMMRFLSHCSVNANMY--IPDRIVDGYGPNPSLMEK-FINEGAQLIITVDCGSTSY 163 (600) Q Consensus 95 I~I~gDyD~DGi---tstail~~~L~~~g~~v~~~--IP~R~~eGYGl~~~~i~~-~~~~g~~LiItvD~Gi~~~ 163 (600) |...+|. =|. +++-+|...|+..|.++.++ +|+-..+ -...+.+ +...++++|||. |.++. T Consensus 15 vitvsD~--rg~~~D~nGp~L~~~l~~~G~~v~~~~iv~Dd~~~----~~~~l~~~~~~~~~dlIiTt--GGtg~ 81 (172) T 1mkz_A 15 ILTVSNR--RGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYA----IRAQVSAWIASDDVQVVLIT--GGTGL 81 (172) T ss_dssp EEEECSS--CCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHH----HHHHHHHHHHSSSCCEEEEE--SCCSS T ss_pred EEEEECC--CCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCHHH----HHHHHHHHHHCCCCCEEEEC--CCEEC T ss_conf 9998489--88676673999999999859957763105885799----99999998762567615852--53134 No 146 >3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, structural genomics, infectious diseases; 1.75A {Bacillus anthracis} PDB: 3osc_A* Probab=45.64 E-value=12 Score=15.45 Aligned_cols=125 Identities=14% Similarity=0.207 Sum_probs=63.8 Q ss_pred HHHHHHHHHCC---CCHHH---------HHHHCCCCHHHCCCCHHHCCCHHHHHHHHHHHHHC-C-CCEEEEECCCCCHH Q ss_conf 99999999678---89789---------88661966777189955614879999999999977-9-97999940788615 Q gi|254780901|r 41 DIVARVLVNRN---VSIDY---------AKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYN-S-EKIMIFGDYDVDGA 106 (600) Q Consensus 41 ~~~a~iL~~Rg---i~~~~---------~~~fL~p~l~~l~~dP~~l~dm~~A~~ri~~ai~~-~-ekI~I~gDyD~DGi 106 (600) .-+++.|..=| |.++. -.-|++.. .+..+|..+.-+-. .+.+.|.+ . +--.|.| -..-|+ T Consensus 27 ~~~~~~L~~~gav~f~~~~~FtL~SG~~S~~Y~d~r--~~~~~P~~~~~i~~---~~~~~i~~~~~~~d~i~G-~~~~Gi 100 (234) T 3m3h_A 27 KEIASHLLEIGAVFLQPNDPFTWSSGMKSPIYCDNR--LTLSYPKVRQTIAA---GLEELIKEHFPTVEVIAG-TATAGI 100 (234) T ss_dssp HHHHHHHHHHTSEEECTTSCEECTTSCEESEEECGG--GGGGCHHHHHHHHH---HHHHHHHHHCTTCCEEEE-C---CH T ss_pred HHHHHHHHHCCCEEECCCCCEEECCCCCCCHHCCCC--HHHCCHHHHHHHHH---HHHHHHHHCCCCCCEEEE-HHHHHH T ss_conf 999999997499985799985867135773123590--14039999999999---999999861888878851-677799 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEEC---CCCCCHHHHHHHHHCCCCEE Q ss_conf 289999999997699479980787433668897898874202686899964---88762345555541798279 Q gi|254780901|r 107 ASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD---CGSTSYDALQYATNQGIDVI 177 (600) Q Consensus 107 tstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD---~Gi~~~e~i~~a~~~GidvI 177 (600) .-++.+.. .++....| ..+...+||.... ++.....|-+.+|.=| .|.|..++|+.+++.|..|+ T Consensus 101 ~~a~~ia~---~l~~p~~~--vRK~~K~~G~~~~-ieg~~~~G~~VlIVDDViTTG~Si~~ai~~lr~~G~~V~ 168 (234) T 3m3h_A 101 AHAAWVSD---RMDLPMCY--VRSKAKGHGKGNQ-IEGKAEKGQKVVVVEDLISTGGSAITCVEALREAGCEVL 168 (234) T ss_dssp HHHHHHHH---HHTCCEEE--EC---------CC-EESCCCTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEE T ss_pred HHHHHHHH---CCCCEEEE--EEECCCCCCCCCE-ECCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCEEE T ss_conf 99999983---45852899--9723888764401-146445795599985300347227999999997899799 No 147 >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} Probab=44.88 E-value=12 Score=15.37 Aligned_cols=104 Identities=13% Similarity=0.197 Sum_probs=53.7 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC--CC------C----CCCCHHHHH Q ss_conf 48799999999999779979999407886152899999999976994799807874--33------6----688978988 Q gi|254780901|r 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI--VD------G----YGPNPSLME 143 (600) Q Consensus 76 ~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~--~e------G----YGl~~~~i~ 143 (600) ...+++++++.+.+.+.++-+|+...-+.-.-+...+.++.+.+|+-|......+. .+ | ++.+. ... T Consensus 193 ~~~~~~~~~~~~~l~~akrPvilvG~G~~~~~~~~~l~~lae~l~~PV~~t~~~~~~~~~~~~~~~G~~~~~~~~~-~~~ 271 (566) T 2vbi_A 193 TSLKAAVDATVALLEKSASPVMLLGSKLRAANALAATETLADKLQCAVTIMAAAKGFFPEDHAGFRGLYWGEVSNP-GVQ 271 (566) T ss_dssp HHHHHHHHHHHHHHHTCSCEEEEECTTTTTTTCHHHHHHHHHHHCCEEEEEGGGTTSSCTTSTTEEEEECGGGSCT-THH T ss_pred CCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEECCCCCCCCCH-HHH T ss_conf 2048999999999972799789827643443220899999986599789711322468755650303543454317-899 Q ss_pred HHHHCCCCEEEEECCCCCCHHHHHH-HHHCCCCEEEECC Q ss_conf 7420268689996488762345555-5417982799615 Q gi|254780901|r 144 KFINEGAQLIITVDCGSTSYDALQY-ATNQGIDVIVIDH 181 (600) Q Consensus 144 ~~~~~g~~LiItvD~Gi~~~e~i~~-a~~~GidvIVtDH 181 (600) .+.+. .++++.+-+-.+...-..+ ....+.++++.|. T Consensus 272 ~~~~~-~d~vl~~g~~~~~~~~~~~~~~~~~~~i~~i~~ 309 (566) T 2vbi_A 272 ELVET-SDALLCIAPVFNDYSTVGWSAWPKGPNVILAEP 309 (566) T ss_dssp HHHHT-CSEEEEESCCCBTTTTTTTTSCCCSTTEEEECS T ss_pred HHHHC-CCEEEEECCCCCCCCCCCCCCCCCCCCEEEECC T ss_conf 99724-877999724456544466432367874488357 No 148 >2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A* Probab=44.35 E-value=13 Score=15.31 Aligned_cols=68 Identities=12% Similarity=0.147 Sum_probs=42.8 Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEE-CCCCCCHHHHHHHHHCCCCEEEECCCC Q ss_conf 99999769947998078743366889789887420268689996-488762345555541798279961544 Q gi|254780901|r 113 MRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV-DCGSTSYDALQYATNQGIDVIVIDHHQ 183 (600) Q Consensus 113 ~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItv-D~Gi~~~e~i~~a~~~GidvIVtDHH~ 183 (600) .+.++..|.++..+-.+--. -...+.++.+...+++.||.. -++....+.++.+++.|+.+++.|+-. T Consensus 24 ~~~a~~~G~~~~i~~~~~d~---~~~~~~i~~l~~~~~d~ii~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 92 (271) T 2dri_A 24 QKEADKLGYNLVVLDSQNNP---AKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 92 (271) T ss_dssp HHHHHHHTCEEEEEECTTCH---HHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCC T ss_pred HHHHHHCCCEEEEEECCCCH---HHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCC T ss_conf 99999859989999689999---9999999999865996896046332222599999754598489934532 No 149 >1vkr_A Mannitol-specific PTS system enzyme iiabc components; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli O157} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B* Probab=44.25 E-value=10 Score=16.08 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=9.8 Q ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHH Q ss_conf 9779979999407886152899999999 Q gi|254780901|r 89 IYNSEKIMIFGDYDVDGAASVALMMRFL 116 (600) Q Consensus 89 i~~~ekI~I~gDyD~DGitstail~~~L 116 (600) ..+-+||++.. .-|+-|+.++..-+ T Consensus 10 ~~~vkkIlvVC---~~G~GSS~ml~~~i 34 (125) T 1vkr_A 10 LSHVRKIIVAC---DAGMGSSAMGAGVL 34 (125) T ss_dssp -CCCCEEEECC---SSSSHHHHHHHHHH T ss_pred HHHHCEEEEEC---CCCCCHHHHHHHHH T ss_conf 76527899999---99965799999999 No 150 >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* Probab=44.15 E-value=13 Score=15.29 Aligned_cols=89 Identities=10% Similarity=0.051 Sum_probs=55.2 Q ss_pred HHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCC--CCC------C-CCCCHHHHH Q ss_conf 5614879999999999977997999940788615289999999997699479980787--433------6-688978988 Q gi|254780901|r 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR--IVD------G-YGPNPSLME 143 (600) Q Consensus 73 ~~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R--~~e------G-YGl~~~~i~ 143 (600) ....--...++++.+.+.+.++.+|+....+.--.+...+.++.+.+++-|......+ +.+ | ++.+..... T Consensus 185 ~~~~~~~~~~~~~~~~l~~a~rpvii~G~~~~~~~~~~~~~~la~~~~~pv~~t~~~~~~~~~~~~~~~g~~~~~~~~~~ 264 (563) T 2uz1_A 185 HGARPDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVFADYEGLSMLSGLPDAMRGGLVQNLYSFA 264 (563) T ss_dssp SCCBCCHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHCCCEEECGGGGGGGTTSCGGGEEEEGGGGGGTT T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 67889999999999999717998899867523001489999999985998897521123235775333464100257899 Q ss_pred HHHHCCCCEEEEECCCCCC Q ss_conf 7420268689996488762 Q gi|254780901|r 144 KFINEGAQLIITVDCGSTS 162 (600) Q Consensus 144 ~~~~~g~~LiItvD~Gi~~ 162 (600) . ....++++|++.+.... T Consensus 265 ~-~~~~~Dlvl~~G~~~~~ 282 (563) T 2uz1_A 265 K-ADAAPDLVLMLGARFGL 282 (563) T ss_dssp T-TTCCCSEEEEESCCSSG T ss_pred H-HHHCCCEEEEECCCCCC T ss_conf 8-75358868870653222 No 151 >1di6_A MOGA, molybdenum cofactor biosythetic enzyme; MOCO, MOCO biosynthesis, gephyrin, unknown function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A Probab=44.14 E-value=13 Score=15.29 Aligned_cols=59 Identities=17% Similarity=0.282 Sum_probs=36.6 Q ss_pred EEEEECCCCCHH---HHHHHHHHHHHHCCCCE---EE-EECCCCCCCCCCCHHHHHHHHHCCCCEEEEE Q ss_conf 999940788615---28999999999769947---99-8078743366889789887420268689996 Q gi|254780901|r 95 IMIFGDYDVDGA---ASVALMMRFLSHCSVNA---NM-YIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 (600) Q Consensus 95 I~I~gDyD~DGi---tstail~~~L~~~g~~v---~~-~IP~R~~eGYGl~~~~i~~~~~~g~~LiItv 156 (600) |.+.+|--.-|. +|+.++.+.|...|..+ .| .+|+...+ +.....+-..+.+++||+|. T Consensus 8 iitvSD~~~~G~~~D~sg~~l~~~L~~~G~~v~~v~~~iV~Dd~~~---I~~~l~~~~~~~~~dlIiTt 73 (195) T 1di6_A 8 LVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAI---IEQTLCELVDEMSCHLVLTT 73 (195) T ss_dssp EEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHH---HHHHHHHHHHTSCCSEEEEE T ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCHHH---HHHHHHHHHHCCCCEEEEEC T ss_conf 9997887547976678399999999974997548777886886799---99999999854595499825 No 152 >3f0h_A Aminotransferase; RER070207000802, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE LLP; 1.70A {Eubacterium rectale} Probab=44.12 E-value=13 Score=15.29 Aligned_cols=98 Identities=6% Similarity=0.108 Sum_probs=62.6 Q ss_pred HCC-CHHHHHHHHH-HHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCC Q ss_conf 614-8799999999-99977997999940788615289999999997699479980787433668897898874202686 Q gi|254780901|r 74 ILT-DCDKAARRIV-QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151 (600) Q Consensus 74 ~l~-dm~~A~~ri~-~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~ 151 (600) .+. .-..|.+-.. ..++.+++|++.- -|.-|. ...+..+..|+++...- ...|.++..+.++++...+++ T Consensus 75 ~~~gsgT~a~ea~~~~l~~~gd~vlv~~----~G~f~~-~~~~ia~~~G~~v~~i~---~~~g~~~d~e~i~~~i~~~~k 146 (376) T 3f0h_A 75 FMTCSSTGSMEAVVMNCFTKKDKVLVID----GGSFGH-RFVQLCEIHEIPYVALK---LEHGKKLTKEKLYEYDNQNFT 146 (376) T ss_dssp EESSCHHHHHHHHHHHHCCTTCCEEEEE----SSHHHH-HHHHHHHHTTCCEEEEE---CCTTCCCCHHHHHTTTTSCCC T ss_pred EEECCHHHHHHHHHHHHCCCCCEEEEEE----CCHHHH-HHHHHHHHHCCCCEEEE---CCCCCCCCHHHHHHHHCCCCC T ss_conf 9908799999999998479959899995----988899-99999998199744631---689987798999987255884 Q ss_pred EEEEECCCC-----CCHHHH-HHHHHCCCCEEEE Q ss_conf 899964887-----623455-5554179827996 Q gi|254780901|r 152 LIITVDCGS-----TSYDAL-QYATNQGIDVIVI 179 (600) Q Consensus 152 LiItvD~Gi-----~~~e~i-~~a~~~GidvIVt 179 (600) ++..+-+.+ .+.++| +.|++.|+-++|= T Consensus 147 ~v~~~~~~t~TG~~~di~~I~~i~~~~~~~lvvD 180 (376) T 3f0h_A 147 GLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCD 180 (376) T ss_dssp EEEEESEETTTTEECCHHHHHHHHHHTTCEEEEE T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEE T ss_conf 8998346786540377367676664059558986 No 153 >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 Probab=44.07 E-value=13 Score=15.28 Aligned_cols=88 Identities=11% Similarity=0.074 Sum_probs=50.2 Q ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCH-HHHHHHHHCCCCEEEEECCCCCCHHHHH Q ss_conf 977997999940788615289999999997699479980787433668897-8988742026868999648876234555 Q gi|254780901|r 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP-SLMEKFINEGAQLIITVDCGSTSYDALQ 167 (600) Q Consensus 89 i~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~-~~i~~~~~~g~~LiItvD~Gi~~~e~i~ 167 (600) +++=++|.|+|--+--|-.| ..+.+.|...|.++...=|.+ ++--|+.. ..++++. ..+++++.+-......+.++ T Consensus 11 ~~~~KsIAVVGaS~~~~k~g-~~v~~~l~~~g~~V~pVnP~~-~~I~G~~~y~sl~dip-~~iDlvvi~~p~~~~~~il~ 87 (138) T 1y81_A 11 SKEFRKIALVGASKNPAKYG-NIILKDLLSKGFEVLPVNPNY-DEIEGLKCYRSVRELP-KDVDVIVFVVPPKVGLQVAK 87 (138) T ss_dssp ---CCEEEEETCCSCTTSHH-HHHHHHHHHTTCEEEEECTTC-SEETTEECBSSGGGSC-TTCCEEEECSCHHHHHHHHH T ss_pred CCCCCEEEEECCCCCCCCHH-HHHHHHHHHCCCEEEEECCCC-CEECCEECCCCCCCCC-CCCEEEEEEECHHHHHHHHH T ss_conf 61047799992169999829-999999997899899988998-4883525444201278-75307999817888799999 Q ss_pred HHHHCCCCEEEE Q ss_conf 554179827996 Q gi|254780901|r 168 YATNQGIDVIVI 179 (600) Q Consensus 168 ~a~~~GidvIVt 179 (600) .+.+.|+..++. T Consensus 88 e~~~~g~k~v~~ 99 (138) T 1y81_A 88 EAVEAGFKKLWF 99 (138) T ss_dssp HHHHTTCCEEEE T ss_pred HHHHCCCCEEEE T ss_conf 997569997896 No 154 >2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A Probab=43.72 E-value=13 Score=15.24 Aligned_cols=85 Identities=22% Similarity=0.223 Sum_probs=47.4 Q ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCEEEEECCCCCHHHHHHHHHHHH Q ss_conf 221002034258999999999989999999999999999999875211----2434750262057858122222278998 Q gi|254780901|r 316 LGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCD----DIQQASVIVVEGDRWHPGIVGLLAARLK 391 (600) Q Consensus 316 ~av~lL~~~d~~~a~~la~~L~~lN~~Rk~~e~~i~~~a~~~~~~~~~----~~~~~~~ivv~~~~wh~GViGIVAsrL~ 391 (600) .++++|+++...+..+.+.+-..+ ..-..||.....-|.. +..... .....+++|+.+++ +-|==|+||+|.. T Consensus 26 ~~mk~ls~~e~~~iD~~~i~~~Gi-s~~~LME~AG~~va~~-i~~~~~~~~~~~~~~~IlvlcG~G-NNGGDGlv~AR~L 102 (265) T 2o8n_A 26 AAVKYLSQEEAQAVDQELFNEYQF-SVDQLMELAGLSCATA-IAKAYPPTSMSKSPPTVLVICGPG-NNGGDGLVCARHL 102 (265) T ss_dssp -CCCCBCHHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHH-HHHHSCGGGSSSSSCEEEEEECSS-HHHHHHHHHHHHH T ss_pred CCCEECCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCCEEEEEECCC-CCHHHHHHHHHHH T ss_conf 644321899999999999987298-9999999999999999-999655222356898499998899-8769999999999 Q ss_pred HHHHCEEEEEEE Q ss_conf 842010799886 Q gi|254780901|r 392 EKFGRPSFAISF 403 (600) Q Consensus 392 e~y~kP~iv~s~ 403 (600) ...+..|-|+.. T Consensus 103 ~~~G~~V~v~~~ 114 (265) T 2o8n_A 103 KLFGYQPTIYYP 114 (265) T ss_dssp HHTTCEEEEECC T ss_pred HHCCCEEEEEEE T ss_conf 975990699994 No 155 >3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV} Probab=43.31 E-value=12 Score=15.60 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=28.3 Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 799799994078861528999999999769947998078743366889789887420268689996488762 Q gi|254780901|r 91 NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162 (600) Q Consensus 91 ~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~ 162 (600) ++-+|+|.=| --+...++.+.|+..|.++... .. ..++++.+.+..+++||+ |..... T Consensus 13 r~lrILiVDD----~~~~r~~l~~~L~~~g~~v~~a-----~~----~~~al~~l~~~~~dlii~-D~~mp~ 70 (143) T 3m6m_D 13 RSMRMLVADD----HEANRMVLQRLLEKAGHKVLCV-----NG----AEQVLDAMAEEDYDAVIV-DLHMPG 70 (143) T ss_dssp --CEEEEECS----SHHHHHHHHHHHHC--CEEEEE-----SS----HHHHHHHHHHSCCSEEEE-ESCCSS T ss_pred CCCEEEEEEC----CHHHHHHHHHHHHHCCCEEEEE-----CC----HHHHHHHHHCCCCCEEEE-ECCCCC T ss_conf 8997999958----8999999999999879999998-----99----999999975289999998-388899 No 156 >1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 Probab=43.07 E-value=13 Score=15.17 Aligned_cols=105 Identities=11% Similarity=0.159 Sum_probs=54.5 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCC--CCCC-------CCC--CHHHHHHH Q ss_conf 879999999999977997999940788615289999999997699479980787--4336-------688--97898874 Q gi|254780901|r 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR--IVDG-------YGP--NPSLMEKF 145 (600) Q Consensus 77 dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R--~~eG-------YGl--~~~~i~~~ 145 (600) .-....+.+.+.+.+.++.+|+....+-+-.+..-+.++.+.+|+-+..-.-.+ +.+. +|. ......++ T Consensus 194 ~~~~~~~~~~~~l~~akrpvii~G~g~~~~~~~~~l~~lae~~~~pv~~t~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~ 273 (552) T 1ovm_A 194 CLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEA 273 (552) T ss_dssp HHHHHHHHHHHHHHTCSCEEEEECHHHHHTTCHHHHHHHHHHSCCEEEECGGGTTSSCTTSTTCCCCCCGGGSCHHHHHH T ss_pred CHHHHHHHHHHHHHHCCCCEEECCCCEECCCCHHHHHHHHHHCCCCCEECCCCCEEECCCCCCCCCCCCCCCCCHHHHHH T ss_conf 11568999999998557757961763103422799999998616871111455301026764235655666677899999 Q ss_pred HHCCCCEEEEECCCCCCHHHHHHHHH-CCCCEEEECCC Q ss_conf 20268689996488762345555541-79827996154 Q gi|254780901|r 146 INEGAQLIITVDCGSTSYDALQYATN-QGIDVIVIDHH 182 (600) Q Consensus 146 ~~~g~~LiItvD~Gi~~~e~i~~a~~-~GidvIVtDHH 182 (600) . ..+++++.+.+-.....--.+... .+..++.+|.| T Consensus 274 l-~~~dlil~~g~~~~~~~~~~~~~~~~~~~~i~i~~d 310 (552) T 1ovm_A 274 I-EGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPH 310 (552) T ss_dssp H-HTSSEEEEESCCCCTTTTTTTCCCCCTTTEEEECSS T ss_pred H-HCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 7-164421130223553100365545541112101687 No 157 >3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125} Probab=42.92 E-value=13 Score=15.15 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=46.4 Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCC-CHHHHHHHHHCCCCEEEECCCCC Q ss_conf 9999976994799807874336688978988742026868999648876-23455555417982799615447 Q gi|254780901|r 113 MRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGST-SYDALQYATNQGIDVIVIDHHQV 184 (600) Q Consensus 113 ~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~-~~e~i~~a~~~GidvIVtDHH~~ 184 (600) ..+.+.+|.++.+.-|...+- .-..+.++.+...+++-||.+-.... ..+.+..+.+.||-|+..|.-.+ T Consensus 27 ~~aa~~~g~~l~~~~~~~~d~--~~q~~~l~~~i~~~~dgIii~~~d~~~~~~~l~~~~~~gIpvv~~d~~~~ 97 (305) T 3g1w_A 27 EDAAQALNVTVEYRGAAQYDI--QEQITVLEQAIAKNPAGIAISAIDPVELTDTINKAVDAGIPIVLFDSGAP 97 (305) T ss_dssp HHHHHHHTCEEEEEECSSSCH--HHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCT T ss_pred HHHHHHCCCEEEEEECCCCCH--HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 999997299899997999999--99999999999769899999788567689999999976995688730443 No 158 >2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius UCC118} SCOP: b.124.1.1 Probab=42.89 E-value=13 Score=15.15 Aligned_cols=27 Identities=30% Similarity=0.674 Sum_probs=13.7 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHH Q ss_conf 99999999999779979999407886152 Q gi|254780901|r 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAA 107 (600) Q Consensus 79 ~~A~~ri~~ai~~~ekI~I~gDyD~DGit 107 (600) +.|+++|.+.+....++++. ||| ||.. T Consensus 9 ~~A~e~L~~~~~~~~~~L~L-~~d-DG~g 35 (128) T 2p2e_A 9 DDAAKKLQRYTDDSNAVLLL-DFD-DGVG 35 (128) T ss_dssp HHHHHHHHHHHTCTTEEEEE-EEC-SSCS T ss_pred HHHHHHHHHHHCCCCCEEEE-EEC-CCCC T ss_conf 99999999862788847999-982-8988 No 159 >1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} Probab=42.85 E-value=13 Score=15.15 Aligned_cols=53 Identities=9% Similarity=0.203 Sum_probs=37.1 Q ss_pred EEEEEEECCCCCCHHHHHHCCCCCEEEEEEEEEEEEECCC-----CEEEEEEEEEEECCC Q ss_conf 7999997787870123553069987999999766545781-----105899998011131 Q gi|254780901|r 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGS-----KRCQLRVLDASPVEG 594 (600) Q Consensus 540 ~i~aI~Fn~~~~~~~~~~~~~~g~~idii~~l~~N~~~G~-----~s~QL~I~Di~p~e~ 594 (600) .+.+.+|+-....+..+ ...|..+-|.++|+.+.|.++ .++++.+.+++..+. T Consensus 64 ~~~v~~wg~~Ae~~~~~--l~KG~~V~V~G~l~~~~~~~kdG~~r~~~~I~a~~i~~l~~ 121 (153) T 1z9f_A 64 FFRIVTFGRLAEFARTY--LTKGRLVLVEGEMRMRRWETPTGEKRVSPEVVANVVRFMDR 121 (153) T ss_dssp EEEEEEEHHHHHHHHHH--CCTTCEEEEEEEEEEEC-------CCCEEEEEEEEEEECC- T ss_pred EEEEEEECCHHHHHHHH--EECCCEEEEEEEEEECCEECCCCCEEEEEEEEEEEEEECCC T ss_conf 69999925206765651--55898999999988461899999899999999969998767 No 160 >3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A* Probab=42.85 E-value=11 Score=15.92 Aligned_cols=29 Identities=31% Similarity=0.502 Sum_probs=19.7 Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHC Q ss_conf 79979999407886152899999999976 Q gi|254780901|r 91 NSEKIMIFGDYDVDGAASVALMMRFLSHC 119 (600) Q Consensus 91 ~~ekI~I~gDyD~DGitstail~~~L~~~ 119 (600) +=.+|+|..|-|+||.--..+|..|+-.+ T Consensus 90 RYgkIiimtDaD~DG~HI~~Lll~ff~~~ 118 (242) T 3m4i_A 90 RYHKIVLMADADVDGQHISTLLLTLLFRF 118 (242) T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHH T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHH T ss_conf 64617998378855220377899999854 No 161 >2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein structure initiative, berkeley structural genomics center, BSGC, transferase; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A Probab=42.80 E-value=13 Score=15.34 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=8.3 Q ss_pred HHHHHHHHHHHHHCCCCE-EEE Q ss_conf 799999999999779979-999 Q gi|254780901|r 78 CDKAARRIVQAIYNSEKI-MIF 98 (600) Q Consensus 78 m~~A~~ri~~ai~~~ekI-~I~ 98 (600) ...|......|++++..| .|| T Consensus 17 a~~al~~A~aal~~gh~V~~vF 38 (130) T 2hy5_A 17 SDSAYQFAKAALEKGHEIFRVF 38 (130) T ss_dssp HHHHHHHHHHHHHTTCEEEEEE T ss_pred HHHHHHHHHHHHHCCCEEEEEE T ss_conf 9999999999997799089999 No 162 >2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Helicobacter pylori 26695} Probab=42.72 E-value=13 Score=15.13 Aligned_cols=30 Identities=7% Similarity=0.121 Sum_probs=15.3 Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEE Q ss_conf 7997999940788615289999999997699479 Q gi|254780901|r 91 NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 (600) Q Consensus 91 ~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~ 124 (600) ++.+|.+|.+ .|.. +......|+..|.+.. T Consensus 55 k~~~iiv~C~---sG~r-S~~a~~~L~~~G~~~v 84 (110) T 2k0z_A 55 KDKKVLLHCR---AGRR-ALDAAKSMHELGYTPY 84 (110) T ss_dssp SSSCEEEECS---SSHH-HHHHHHHHHHTTCCCE T ss_pred CCCCEEEECC---CCHH-HHHHHHHHHHCCCCEE T ss_conf 9986899889---9848-9999999998599879 No 163 >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta- barrel, lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 Probab=42.68 E-value=13 Score=15.13 Aligned_cols=104 Identities=10% Similarity=0.052 Sum_probs=72.2 Q ss_pred CCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCC Q ss_conf 99556148799999999999779979999407886152899999999976994799807874336688978988742026 Q gi|254780901|r 70 PDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEG 149 (600) Q Consensus 70 ~dP~~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g 149 (600) +-|.--..|....++|...+++..-|-|+.-.|. .-..-+.++|..-|.++.-. .-|-.. ..++|+.+.++. T Consensus 4 ~~~~~~~~~~~~~~~i~~i~~~~~iipvi~~~~~---~~a~~~a~al~~~Gi~~iEi-tl~tp~----a~e~i~~l~~~~ 75 (225) T 1mxs_A 4 ERPQPKLSMADKAARIDAICEKARILPVITIARE---EDILPLADALAAGGIRTLEV-TLRSQH----GLKAIQVLREQR 75 (225) T ss_dssp ------CCHHHHHHHHHHHHHHHSEEEEECCSCG---GGHHHHHHHHHHTTCCEEEE-ESSSTH----HHHHHHHHHHHC T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCH---HHHHHHHHHHHHCCCCEEEE-ECCCCH----HHHHHHHHHHHC T ss_conf 8899863687889999999986987899975999---99999999999879988999-589940----999999999749 Q ss_pred CCEEEEECCCC-CCHHHHHHHHHCCCCEEEECCCC Q ss_conf 86899964887-62345555541798279961544 Q gi|254780901|r 150 AQLIITVDCGS-TSYDALQYATNQGIDVIVIDHHQ 183 (600) Q Consensus 150 ~~LiItvD~Gi-~~~e~i~~a~~~GidvIVtDHH~ 183 (600) .+++|-+ |+ .+.++++.+.+.|.+.||+=|-. T Consensus 76 p~~~iGa--GTV~~~~~~~~a~~aGa~FivsP~~~ 108 (225) T 1mxs_A 76 PELCVGA--GTVLDRSMFAAVEAAGAQFVVTPGIT 108 (225) T ss_dssp TTSEEEE--ECCCSHHHHHHHHHHTCSSEECSSCC T ss_pred CCCEEEE--EECCCHHHHHHHHHCCCCEEECCCCC T ss_conf 9707865--30367999999997799899889895 No 164 >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} Probab=42.68 E-value=13 Score=15.13 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=25.8 Q ss_pred EECCCCCCHHHHHHHHHCCCCEEEECCCCCCCC Q ss_conf 964887623455555417982799615447655 Q gi|254780901|r 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 (600) Q Consensus 155 tvD~Gi~~~e~i~~a~~~GidvIVtDHH~~~~~ 187 (600) .|+.-.+..|+++.+++.-.|+|++|-++|.-. T Consensus 7 vv~~A~~g~eal~~~~~~~pdlv~~Di~mP~~~ 39 (237) T 3cwo_X 7 IVDDATNGREAVEKYKELKPDIVTMDITMPEMN 39 (237) T ss_dssp EEECCCSSSTTHHHHHHHCCSCEEEECCSTTSS T ss_pred EEEEECCHHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 999859999999999843999999928789989 No 165 >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus P2} PDB: 1qzx_A 1qzw_A Probab=42.54 E-value=13 Score=15.11 Aligned_cols=79 Identities=14% Similarity=0.288 Sum_probs=36.4 Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHC----CCCEEEEECCCCC----CHHHH Q ss_conf 999940788615289999999997699479980787433668897898874202----6868999648876----23455 Q gi|254780901|r 95 IMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE----GAQLIITVDCGST----SYDAL 166 (600) Q Consensus 95 I~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~----g~~LiItvD~Gi~----~~e~i 166 (600) |+++|=.-+-=.|+.|=|..+++.-|.+|-..--+-+ -..++|++... |+.++ ....+.. +.+++ T Consensus 100 i~lvG~~G~GKTTTiaKLA~~~~~~g~kV~lva~Dty------R~aA~eQL~~~a~~~~v~v~-~~~~~~dp~~v~~~~~ 172 (433) T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY------RPAAYDQLLQLGNQIGVQVY-GEPNNQNPIEIAKKGV 172 (433) T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS------CHHHHHHHHHHHHTTTCCEE-CCTTCSCHHHHHHHHH T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCC------CCCHHHHHHHHHHCCCCEEE-CCCCCCCHHHHHHHHH T ss_conf 9997478887013499999999865981589844775------66779999998724780460-4666567677899999 Q ss_pred HHHHHCCCCEEEEC Q ss_conf 55541798279961 Q gi|254780901|r 167 QYATNQGIDVIVID 180 (600) Q Consensus 167 ~~a~~~GidvIVtD 180 (600) ++|+..+.|+|++| T Consensus 173 ~~a~~~~~DvvlID 186 (433) T 3kl4_A 173 DIFVKNKMDIIIVD 186 (433) T ss_dssp HHTTTTTCSEEEEE T ss_pred HHHHHCCCCEEEEE T ss_conf 98763489989974 No 166 >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein structure initiative; 2.66A {Mycobacterium tuberculosis CDC1551} SCOP: c.2.1.1 Probab=42.46 E-value=13 Score=15.10 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=13.2 Q ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEE Q ss_conf 779979999407886152899999999976994799 Q gi|254780901|r 90 YNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125 (600) Q Consensus 90 ~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~ 125 (600) +.+++++|+| +-|..+.+.+. +++.+|.++.. T Consensus 37 ~~g~~VlV~g---a~g~vG~~~iq-~a~~~g~~vi~ 68 (198) T 1pqw_A 37 SPGERVLIHS---ATGGVGMAAVS-IAKMIGARIYT 68 (198) T ss_dssp CTTCEEEETT---TTSHHHHHHHH-HHHHHTCEEEE T ss_pred CCCCEEEEEC---CCCHHHHHHHH-HHHHCCCEEEE T ss_conf 9998589985---75668699999-88744964898 No 167 >1m1n_B Nitrogenase molybdenum-iron protein beta chain; atomic resolution, FEMO cofactor, nitrogen fixation, central nitrogen ligand; HET: HCA CLF CFN; 1.16A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B* 1g20_B* 1fp4_B* 1g21_B* Probab=42.35 E-value=13 Score=15.09 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=25.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCEEEEEEEC Q ss_conf 999999999999999999987521124347502620578581222222789988420107998863 Q gi|254780901|r 339 LNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE 404 (600) Q Consensus 339 lN~~Rk~~e~~i~~~a~~~~~~~~~~~~~~~~ivv~~~~wh~GViGIVAsrL~e~y~kP~iv~s~~ 404 (600) +.++|+.+...+.+. ...+ ...++.+..+++ =++|++ .=|.|.--.|+.+++.. T Consensus 343 i~~er~rl~d~~~d~-~~~l-------~GKrvaI~gd~~---~~~~l~-~fL~ElG~~~~~v~~~~ 396 (522) T 1m1n_B 343 LTKERGRLVDMMTDS-HTWL-------HGKRFALWGDPD---FVMGLV-KFLLELGCEPVHILCHN 396 (522) T ss_dssp HHHHHHHHHHHHHHH-HHHH-------TTCEEEEECCHH---HHHHHH-HHHHHTTCEEEEEEETT T ss_pred HHHHHHHHHHHHHHH-HHHH-------CCCEEEEECCCH---HHHHHH-HHHHHCCCCEEEEEECC T ss_conf 999999999999999-9985-------798799989848---899999-99998699616999579 No 168 >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Probab=42.23 E-value=14 Score=15.08 Aligned_cols=168 Identities=15% Similarity=0.237 Sum_probs=94.9 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCC--C--HHHHHHHCCCCHHHCCCCHHHC-CCHHHHHHHHH Q ss_conf 47887341157888988999999881999999999996788--9--7898866196677718995561-48799999999 Q gi|254780901|r 12 SISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNV--S--IDYAKDFLNPSIRLLMPDPLIL-TDCDKAARRIV 86 (600) Q Consensus 12 s~~~~rW~~~~~~~~~~~~~~l~~~~~~~~~~a~iL~~Rgi--~--~~~~~~fL~p~l~~l~~dP~~l-~dm~~A~~ri~ 86 (600) ++.|..|+-.+. --...+..+++++= .+-|+=-..+|+ . .+..+.| ...+ ||.+ +|=.+|.+.|. T Consensus 547 kLG~~~W~k~K~-kakk~i~~iA~eLl--~lyA~R~~~~~~~~~~~~~~~~~~-----~~~~--~~~~t~~q~~a~~~i~ 616 (1151) T 2eyq_A 547 KLGGDAWSRARQ-KAAEKVRDVAAELL--DIYAQRAAKEGFAFKHDREQYQLF-----CDSF--PFETTPDQAQAINAVL 616 (1151) T ss_dssp CTTCSHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHTSCCCCCCCCHHHHHHH-----HHTC--CSCCCHHHHHHHHHHH T ss_pred CCCCHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCHHHHHHH-----HHHC--CCCCCHHHHHHHHHHH T ss_conf 578168999999-99999999999999--999997520375304533468999-----9747--7667877999999998 Q ss_pred HHHHCCCC--EEEEECCCC-CHHHHHHHHHHHHH-HCCCCEEEEECCCCCCCCCCCHHHHHHHHHC----CCCEEEEECC Q ss_conf 99977997--999940788-61528999999999-7699479980787433668897898874202----6868999648 Q gi|254780901|r 87 QAIYNSEK--IMIFGDYDV-DGAASVALMMRFLS-HCSVNANMYIPDRIVDGYGPNPSLMEKFINE----GAQLIITVDC 158 (600) Q Consensus 87 ~ai~~~ek--I~I~gDyD~-DGitstail~~~L~-~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~----g~~LiItvD~ 158 (600) +.+...+. .+++|| + =|=|.++++--+.. .-|..+-+..|.|. |.....+.+.+. +...-+ +-- T Consensus 617 ~~~~~~~~~~~L~~g~--tGsGKT~v~~~a~~~a~~~g~qv~il~PT~~-----La~Q~~~~~~~~~~~~~~~v~~-l~~ 688 (1151) T 2eyq_A 617 SDMCQPLAMDRLVCGD--VGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL-----LAQQHYDNFRDRFANWPVRIEM-ISR 688 (1151) T ss_dssp HHHHSSSCCEEEEECC--CCTTTHHHHHHHHHHHHTTTCEEEEECSSHH-----HHHHHHHHHHHHSTTTTCCEEE-EST T ss_pred HHHHCCCHHHHEEECC--CCCCHHHHHHHHHHHHHHCCCEEEEEECCHH-----HHHHHHHHHHHHHHCCCCEEEE-EEC T ss_conf 8760685566643407--8986699999999998635864899948499-----9999999999975115978998-517 Q ss_pred CCCCHHHHHHH---HHCCCCEEEECCCCCCCCCCC---CEEEECC Q ss_conf 87623455555---417982799615447655567---2565237 Q gi|254780901|r 159 GSTSYDALQYA---TNQGIDVIVIDHHQVKSEEIP---AYALVNP 197 (600) Q Consensus 159 Gi~~~e~i~~a---~~~GidvIVtDHH~~~~~~p~---a~aivNP 197 (600) |.+..+..+.. +.-.+|++|.-|-......+- ...||.= T Consensus 689 ~~~~~e~~~~l~~~~~G~i~iiigT~~~l~~~~~f~~Lgl~iiDE 733 (1151) T 2eyq_A 689 FRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDE 733 (1151) T ss_dssp TSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEES T ss_pred CCCHHHHHHHHHHHCCCCCCEEECCHHHCCCCCCCCCCCEEEECH T ss_conf 762889999998743898344742588802760215567346242 No 169 >1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} Probab=42.18 E-value=12 Score=15.50 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=10.2 Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCE Q ss_conf 8999648876234555554179827 Q gi|254780901|r 152 LIITVDCGSTSYDALQYATNQGIDV 176 (600) Q Consensus 152 LiItvD~Gi~~~e~i~~a~~~Gidv 176 (600) +++.|..|..+..+...++++|.++ T Consensus 56 iv~~C~~g~rs~~aa~~L~~~G~~~ 80 (94) T 1wv9_A 56 LLLVCEKGLLSQVAALYLEAEGYEA 80 (94) T ss_dssp EEEECSSSHHHHHHHHHHHHHTCCE T ss_pred EEEECCCCCCHHHHHHHHHHCCCCE T ss_conf 3677799824999999999869939 No 170 >3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli} Probab=41.91 E-value=13 Score=15.30 Aligned_cols=29 Identities=31% Similarity=0.502 Sum_probs=20.7 Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHC Q ss_conf 79979999407886152899999999976 Q gi|254780901|r 91 NSEKIMIFGDYDVDGAASVALMMRFLSHC 119 (600) Q Consensus 91 ~~ekI~I~gDyD~DGitstail~~~L~~~ 119 (600) +=.||.|..|-||||.--..+|..|+-.+ T Consensus 105 ry~~i~i~tdad~dg~hi~~ll~~~~~~~ 133 (420) T 3nuh_B 105 RYHSIIIMTDADVDGSHIRTLLLTFFYRQ 133 (420) T ss_dssp CCSEEEECCCSSTTTTHHHHHHHHHHHHH T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHH T ss_conf 54527997357877520588999999986 No 171 >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* Probab=41.64 E-value=14 Score=15.01 Aligned_cols=29 Identities=10% Similarity=0.173 Sum_probs=12.4 Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEE Q ss_conf 9979999407886152899999999976994799 Q gi|254780901|r 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM 125 (600) Q Consensus 92 ~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~ 125 (600) ++++.|+|- |-.+.++ .+.|...|.+|.. T Consensus 6 ~~~~iIiG~----G~~G~~l-a~~L~~~g~~vvv 34 (144) T 2hmt_A 6 NKQFAVIGL----GRFGGSI-VKELHRMGHEVLA 34 (144) T ss_dssp CCSEEEECC----SHHHHHH-HHHHHHTTCCCEE T ss_pred CCEEEEECC----CHHHHHH-HHHHHHCCCEEEE T ss_conf 783999887----8999999-9999988991999 No 172 >3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} Probab=41.40 E-value=14 Score=14.99 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=9.6 Q ss_pred HHHHHHHHHCCCCCCCC Q ss_conf 99999998518467899 Q gi|254780901|r 490 IALIDMLESAGPYGAGN 506 (600) Q Consensus 490 ~~l~~~L~~lePFG~gN 506 (600) ..+.+.|+.+..|+.+- T Consensus 310 ~~v~~al~~~~~~~~~g 326 (364) T 3lop_A 310 EQVRHALTELRDYDVGG 326 (364) T ss_dssp HHHHHHHHTCEEEESST T ss_pred HHHHHHHHCCCCCCCCC T ss_conf 99999997179857888 No 173 >3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structural genomics, protein structure initiative; 2.20A {Bacteroides fragilis nctc 9343} Probab=41.34 E-value=14 Score=14.98 Aligned_cols=65 Identities=15% Similarity=0.056 Sum_probs=42.2 Q ss_pred HCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCC-HHHHHHHHHCCCCEEEECCCCC Q ss_conf 769947998078743366889789887420268689996488762-3455555417982799615447 Q gi|254780901|r 118 HCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS-YDALQYATNQGIDVIVIDHHQV 184 (600) Q Consensus 118 ~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~-~e~i~~a~~~GidvIVtDHH~~ 184 (600) .+|.++.+..+++.+. --....++.+...+++-||.+-.-... .+.++.+++.||-||.+|...+ T Consensus 40 ~~~i~~~i~~~~~~d~--~~q~~~l~~~i~~~vDgIii~~~~~~~~~~~i~~~~~~gipvv~~d~~~~ 105 (304) T 3gbv_A 40 DFNISANITHYDPYDY--NSFVATSQAVIEEQPDGVMFAPTVPQYTKGFTDALNELGIPYIYIDSQIK 105 (304) T ss_dssp GGCEEEEEEEECSSCH--HHHHHHHHHHHTTCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEESSCCT T ss_pred CCCEEEEEEECCCCCH--HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 4887999996898999--99999999999759999999466514059999999975993999942433 No 174 >3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus} Probab=41.16 E-value=14 Score=14.96 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=8.4 Q ss_pred HHHHHHHHHCCCCEEEEECC Q ss_conf 78988742026868999648 Q gi|254780901|r 139 PSLMEKFINEGAQLIITVDC 158 (600) Q Consensus 139 ~~~i~~~~~~g~~LiItvD~ 158 (600) .++++.+.+..++||| +|. T Consensus 37 ~eal~~l~~~~pdlii-lD~ 55 (133) T 3nhm_A 37 ASGLQQALAHPPDVLI-SDV 55 (133) T ss_dssp HHHHHHHHHSCCSEEE-ECS T ss_pred HHHHHHHHHCCCCEEE-ECC T ss_conf 9999999847999999-759 No 175 >3c85_A Putative glutathione-regulated potassium-efflux system protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} Probab=41.09 E-value=14 Score=14.95 Aligned_cols=126 Identities=12% Similarity=0.082 Sum_probs=69.7 Q ss_pred HHCCCHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHH-HHCCC Q ss_conf 561487999999999997-7997999940788615289999999997699479980787433668897898874-20268 Q gi|254780901|r 73 LILTDCDKAARRIVQAIY-NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKF-INEGA 150 (600) Q Consensus 73 ~~l~dm~~A~~ri~~ai~-~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~-~~~g~ 150 (600) ..+-++.+.-..+.+.+. ++-...|.-|.|.+- .+.++..|..+.+ |-.-..+.++++ ..+.+ T Consensus 42 viI~G~GrvG~~ia~~L~~~~~~~~vviD~d~~~-------v~~l~~~g~~~v~--------gD~~d~~~L~~a~~~~~a 106 (183) T 3c85_A 42 VLILGMGRIGTGAYDELRARYGKISLGIEIREEA-------AQQHRSEGRNVIS--------GDATDPDFWERILDTGHV 106 (183) T ss_dssp EEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHH-------HHHHHHTTCCEEE--------CCTTCHHHHHTBCSCCCC T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHH-------HHHHHCCCCEEEE--------CCCCCHHHHHHHCCCCCC T ss_conf 8998988899999999998489869999388188-------7886304613898--------689999999971496767 Q ss_pred CEEEEE-CCCCCCHHHHHHHHHCCCC--EEEECCCCCCCC-CC--CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 689996-4887623455555417982--799615447655-56--725652378888643344304788999999999 Q gi|254780901|r 151 QLIITV-DCGSTSYDALQYATNQGID--VIVIDHHQVKSE-EI--PAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLI 222 (600) Q Consensus 151 ~LiItv-D~Gi~~~e~i~~a~~~Gid--vIVtDHH~~~~~-~p--~a~aivNP~~~~~~~p~~~l~gaGvaf~l~~al 222 (600) +++|.+ +.-..+...+..++++|.+ +|+.=++.-..+ +- -++.+|+|. ..+|.++|-.++..| T Consensus 107 ~~vi~~~~~~~~n~~~~~~~r~~~~~~~Iiara~~~~~~~~L~~~Gad~Vv~p~---------~~~g~~la~~~l~~l 175 (183) T 3c85_A 107 KLVLLAMPHHQGNQTALEQLQRRNYKGQIAAIAEYPDQLEGLLESGVDAAFNIY---------SEAGSGFARHVCKQL 175 (183) T ss_dssp CEEEECCSSHHHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHTCSEEEEHH---------HHHHHHHHHHHHHHH T ss_pred CEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECHH---------HHHHHHHHHHHHHHH T ss_conf 499981684079999999999878994799997799999999986999999859---------999999999999860 No 176 >3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp} Probab=41.00 E-value=14 Score=14.94 Aligned_cols=43 Identities=16% Similarity=0.259 Sum_probs=25.9 Q ss_pred HHHHHHHCCCCEEEEECCCCC-----------------------CHHHHHHHHHCCCCEEEECCCCC Q ss_conf 988742026868999648876-----------------------23455555417982799615447 Q gi|254780901|r 141 LMEKFINEGAQLIITVDCGST-----------------------SYDALQYATNQGIDVIVIDHHQV 184 (600) Q Consensus 141 ~i~~~~~~g~~LiItvD~Gi~-----------------------~~e~i~~a~~~GidvIVtDHH~~ 184 (600) .++++.+++.+. +.+|+|=. ....++..+..|.|++..=.|+. T Consensus 46 ~i~~~r~~~~~~-l~ldaGD~~~Gs~~~~~~~~~~~~~~~~~~~g~~~~~~~n~~g~Da~~~GNHEf 111 (341) T 3gve_A 46 LIQKHREQNPNT-LLVDNGDLIQGNPLGEYAVKYQKDDIISGTKTHPIISVMNALKYDAGTLGNHEF 111 (341) T ss_dssp HHHHHHHHCSSE-EEEECSCCSCSSHHHHHHHHHHHHHHHHTSSCCHHHHHHHHTTCCBEECCGGGG T ss_pred HHHHHHHHCCCE-EEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEECCHHHC T ss_conf 999999659987-999778656786025554320344332244670899998704887672251530 No 177 >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} Probab=40.97 E-value=14 Score=14.94 Aligned_cols=10 Identities=60% Similarity=0.803 Sum_probs=3.8 Q ss_pred HHHHHHHHHH Q ss_conf 2227899884 Q gi|254780901|r 384 GLLAARLKEK 393 (600) Q Consensus 384 GIVAsrL~e~ 393 (600) |=+|.+++.+ T Consensus 175 aKLA~~~k~~ 184 (359) T 2og2_A 175 GKLAHRLKNE 184 (359) T ss_dssp HHHHHHHHHT T ss_pred HHHHHHHHHC T ss_conf 9999999966 No 178 >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence of substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Probab=40.93 E-value=14 Score=14.93 Aligned_cols=101 Identities=13% Similarity=0.151 Sum_probs=55.6 Q ss_pred CCCHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEE Q ss_conf 14879999999999977-99799994078861528999999999769947998078743366889789887420268689 Q gi|254780901|r 75 LTDCDKAARRIVQAIYN-SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLI 153 (600) Q Consensus 75 l~dm~~A~~ri~~ai~~-~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~Li 153 (600) ..+-..+...+..++-+ +.+|+|- +.-=.+. ...++.+|.++.. +|-...+||+++.+.+++....+++++ T Consensus 93 t~G~~~~~~~~~~~~~~~gd~Vli~-~P~y~~~------~~~~~~~g~~~~~-v~~~~~~~~~~d~~~l~~~~~~~~~~i 164 (389) T 1gd9_A 93 LLGANQAFLMGLSAFLKDGEEVLIP-TPAFVSY------APAVILAGGKPVE-VPTYEEDEFRLNVDELKKYVTDKTRAL 164 (389) T ss_dssp ESSTTHHHHHHHTTTCCTTCEEEEE-ESCCTTH------HHHHHHHTCEEEE-EECCGGGTTCCCHHHHHHHCCTTEEEE T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEC-CCCCHHH------HHHHHHCCCEEEE-EECCCCCCCCCCHHHHHHHCCCCCCEE T ss_conf 7874579999999972897989991-8987899------9999986998999-742266688779999997376798389 Q ss_pred EEEC----CCCC-CHHH----HHHHHHCCCCEEEECCCC Q ss_conf 9964----8876-2345----555541798279961544 Q gi|254780901|r 154 ITVD----CGST-SYDA----LQYATNQGIDVIVIDHHQ 183 (600) Q Consensus 154 ItvD----~Gi~-~~e~----i~~a~~~GidvIVtDHH~ 183 (600) +.+. +|.. +.++ ++.|++.|+-||+=|-|. T Consensus 165 ~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~ 203 (389) T 1gd9_A 165 IINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYE 203 (389) T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT T ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCH T ss_conf 986998971635899999999999998695999957644 No 179 >1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle, hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1 c.45.1.1 PDB: 1ohc_A 1ohd_A Probab=40.79 E-value=14 Score=14.92 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=15.9 Q ss_pred HHHCCCHHHHHHHHHHHHHC----CCCEEEEECCCCCHHHHHHHH Q ss_conf 55614879999999999977----997999940788615289999 Q gi|254780901|r 72 PLILTDCDKAARRIVQAIYN----SEKIMIFGDYDVDGAASVALM 112 (600) Q Consensus 72 P~~l~dm~~A~~ri~~ai~~----~ekI~I~gDyD~DGitstail 112 (600) |..+.-+-+.+..+.+-+++ +++|+.|...|...-+-+|.| T Consensus 53 Plnl~~~~rf~~~~~~~L~~~~~~~k~iv~yt~~~~~~r~Naa~L 97 (348) T 1ohe_A 53 PLNLAMVYRYCCKINKKLKSITMLRKKIVHFTGSDQRKQANAAFL 97 (348) T ss_dssp CCCHHHHHHHHHHHHHHHHCGGGTTSEEEEEECSCHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHH T ss_conf 732999999999999998281004975999858982888889999 No 180 >1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase, transferase; 2.65A {Methanocaldococcus jannaschii} SCOP: c.61.1.2 c.61.1.2 PDB: 1u9z_A* Probab=40.76 E-value=14 Score=14.92 Aligned_cols=72 Identities=18% Similarity=0.249 Sum_probs=51.5 Q ss_pred CCCCEEEEEC-CCC-CHHHHHHHHHHHHHHCCC-CEEEEEC-------C-CCCCCCCCCHHHHHHHHHCCCCEEEEECCC Q ss_conf 7997999940-788-615289999999997699-4799807-------8-743366889789887420268689996488 Q gi|254780901|r 91 NSEKIMIFGD-YDV-DGAASVALMMRFLSHCSV-NANMYIP-------D-RIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 (600) Q Consensus 91 ~~ekI~I~gD-yD~-DGitstail~~~L~~~g~-~v~~~IP-------~-R~~eGYGl~~~~i~~~~~~g~~LiItvD~G 159 (600) +++.+.|+.. ++. |-+.-..++..+|++.|+ ++...+| + |+..|=-++...+.++.+.|++-+||+|-- T Consensus 46 rg~~v~iv~s~~~~nd~l~ell~~~~alr~~ga~~itlViPYl~YaRQDR~~~~ge~isak~~a~ll~~g~d~vvt~D~H 125 (284) T 1u9y_A 46 NDDEAVIINTQKNQNDAIVETILLCDALRDEGVKKITLVAPYLAYARQDKKFNPGEAISIRALAKIYSNIVDKLITINPH 125 (284) T ss_dssp CSSEEEEECCCSSHHHHHHHHHHHHHHHHTTTCCEEEEECSSCTTCSCSSCSSTTBCCHHHHHHHHHHHHCSEEEEESCS T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECC T ss_conf 89869999279983365999999999998718873899952232010465458987358999999987456844898378 Q ss_pred CCC Q ss_conf 762 Q gi|254780901|r 160 STS 162 (600) Q Consensus 160 i~~ 162 (600) +.. T Consensus 126 ~~~ 128 (284) T 1u9y_A 126 ETH 128 (284) T ss_dssp CGG T ss_pred CHH T ss_conf 178 No 181 >1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A Probab=40.66 E-value=14 Score=14.91 Aligned_cols=93 Identities=23% Similarity=0.252 Sum_probs=60.1 Q ss_pred CCCHHHHHHHHHHHHH-----CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCC Q ss_conf 1487999999999997-----79979999407886152899999999976994799807874336688978988742026 Q gi|254780901|r 75 LTDCDKAARRIVQAIY-----NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEG 149 (600) Q Consensus 75 l~dm~~A~~ri~~ai~-----~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g 149 (600) +-|+++-.++|..|.+ ++.+|++.|-- -. +.-+..++-+..|. +|+..|+.-|-=-|.. .. .... T Consensus 46 IIdL~kT~~~L~~A~~fl~~~~~~~ILfVgtk---~~-~~~~v~~~A~~~g~---~yv~~rWlgG~LTN~~-~~--~~~~ 115 (208) T 1vi6_A 46 VLDIRKLDERIRVAAKFLSRYEPSKILLVAAR---QY-AHKPVQMFSKVVGS---DYIVGRFIPGTLTNPM-LS--EYRE 115 (208) T ss_dssp EECHHHHHHHHHHHHHHHTTSCGGGEEEEECS---GG-GHHHHHHHHHHHCC---EEEESSCCTTTTTCTT-ST--TCCC T ss_pred EEEHHHHHHHHHHHHHHHHHCCCCCEEEEECC---HH-HHHHHHHHHHHCCC---CCCCCCCCCCCCCCHH-HH--HCCC T ss_conf 96799999999999999985567727998345---88-99999999986468---7544645677544667-77--4146 Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEE Q ss_conf 86899964887623455555417982799 Q gi|254780901|r 150 AQLIITVDCGSTSYDALQYATNQGIDVIV 178 (600) Q Consensus 150 ~~LiItvD~Gi~~~e~i~~a~~~GidvIV 178 (600) ++++|.+|.- ....+|..|..+||.+|- T Consensus 116 P~~viv~dp~-~d~~ai~Ea~~l~IP~I~ 143 (208) T 1vi6_A 116 PEVVFVNDPA-IDKQAVSEATAVGIPVVA 143 (208) T ss_dssp CSEEEESCTT-TTHHHHHHHHHTTCCEEE T ss_pred CCCCEEECCC-CCHHHHHHHHHCCCCEEE T ss_conf 7660777677-537999999980996588 No 182 >1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E Probab=40.35 E-value=13 Score=15.33 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=25.4 Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCC Q ss_conf 99799994078861528999999999769947998078743366889789887420268689996488 Q gi|254780901|r 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 (600) Q Consensus 92 ~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~G 159 (600) ++||+|.=| --+...++...|+..|.+|... .. ..++++.+.+..+++|| +|.. T Consensus 3 ~~rILiVDD----~~~~~~~l~~~L~~~g~~v~~a-----~~----g~eal~~~~~~~~dlii-lD~~ 56 (124) T 1srr_A 3 NEKILIVDD----QSGIRILLNEVFNKEGYQTFQA-----AN----GLQALDIVTKERPDLVL-LDMK 56 (124) T ss_dssp CCEEEEECS----CHHHHHHHHHHHHTTTCEEEEE-----SS----HHHHHHHHHHHCCSEEE-EESC T ss_pred CCEEEEEEC----CHHHHHHHHHHHHHCCCEEEEE-----CC----HHHHHHHHHHCCCCEEE-EECC T ss_conf 885999979----9999999999999869989995-----99----89999999807998899-8536 No 183 >3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans} Probab=40.31 E-value=14 Score=14.87 Aligned_cols=38 Identities=11% Similarity=0.206 Sum_probs=19.3 Q ss_pred HHHHHH-HCCCCEEEEECCCCCCHHHHHHHHHCCCCEEE Q ss_conf 988742-02686899964887623455555417982799 Q gi|254780901|r 141 LMEKFI-NEGAQLIITVDCGSTSYDALQYATNQGIDVIV 178 (600) Q Consensus 141 ~i~~~~-~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIV 178 (600) ..+++. ++++..||-..+...+......+.+.|+-+|+ T Consensus 64 ~a~~Lv~~~~V~~viG~~~S~~~~a~~~~~~~~~vp~i~ 102 (379) T 3n0w_A 64 IAREWFDRDGVDAIFDVVNSGTALAINNLVKDKKKLAFI 102 (379) T ss_dssp HHHHHHHHSCCCEEEECCCHHHHHHHHHHHHHHTCEEEE T ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEE T ss_conf 999999747986999614219899999999872477233 No 184 >2rgw_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, pyrimidine biosynthesis, thermostability; 2.80A {Methanococcus jannaschii} PDB: 3e2p_A Probab=40.28 E-value=14 Score=14.86 Aligned_cols=50 Identities=10% Similarity=-0.017 Sum_probs=20.3 Q ss_pred HHHHHHHH-HHHHCCCCEEEEECCC-CCCCCCCCHHHHHHHHHCCCCEEEEE Q ss_conf 28999999-9997699479980787-43366889789887420268689996 Q gi|254780901|r 107 ASVALMMR-FLSHCSVNANMYIPDR-IVDGYGPNPSLMEKFINEGAQLIITV 156 (600) Q Consensus 107 tstail~~-~L~~~g~~v~~~IP~R-~~eGYGl~~~~i~~~~~~g~~LiItv 156 (600) |=|-+=.+ +..++|..+.++-+.. ..-|.|-+.+-.-++....++.|+.- T Consensus 52 tRTR~SFe~A~~~LGg~~i~l~~~~~s~~~~~Es~~Dta~vls~~~d~iviR 103 (306) T 2rgw_A 52 TRTRLSFETAMKRLGGEVITMTDLKSSSVAKGESLIDTIRVISGYADIIVLR 103 (306) T ss_dssp HHHHHHHHHHHHHTTCEEEEECCSSTTTTTTTCCHHHHHHHHHHHCSEEEEE T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEE T ss_conf 5068899999998599621255431133568714999996614468569997 No 185 >2jk1_A HUPR, hydrogenase transcriptional regulatory protein HUPR1; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B Probab=40.18 E-value=14 Score=14.85 Aligned_cols=44 Identities=14% Similarity=0.211 Sum_probs=27.9 Q ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCC Q ss_conf 898874202686899964887623455555417982799615447655 Q gi|254780901|r 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 (600) Q Consensus 140 ~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~~~~~ 187 (600) ..+..+.+.|.+.. ++.+ ..++++.+.+...|+|++|.+.|... T Consensus 15 ~~l~~~L~~g~~v~-~a~~---~~~al~~~~~~~~dlvl~D~~mP~~~ 58 (139) T 2jk1_A 15 AAMKLALEDDFDVL-TAQG---AEAAIAILEEEWVQVIICDQRMPGRT 58 (139) T ss_dssp HHHHHHHTTTSCEE-EESS---HHHHHHHHHHSCEEEEEEESCCSSSC T ss_pred HHHHHHHHCCCEEE-EECC---HHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 99999998799999-9899---99999999728999999855678985 No 186 >1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 1cye_A 2che_A 2chf_A 2pl9_A* 2pmc_A ... Probab=40.16 E-value=12 Score=15.47 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=12.9 Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCC Q ss_conf 7999940788615289999999997699 Q gi|254780901|r 94 KIMIFGDYDVDGAASVALMMRFLSHCSV 121 (600) Q Consensus 94 kI~I~gDyD~DGitstail~~~L~~~g~ 121 (600) +|+|.= |--+...++...|+..|. T Consensus 6 rILiVD----D~~~~r~~l~~~L~~~g~ 29 (128) T 1jbe_A 6 KFLVVD----DFSTMRRIVRNLLKELGF 29 (128) T ss_dssp CEEEEC----SCHHHHHHHHHHHHHTTC T ss_pred EEEEEE----CCHHHHHHHHHHHHHCCC T ss_conf 999996----989999999999998799 No 187 >3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli K12} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ... Probab=39.85 E-value=15 Score=14.81 Aligned_cols=20 Identities=10% Similarity=0.049 Sum_probs=8.2 Q ss_pred EEEECCCCCCCCCCCCCHHH Q ss_conf 56523788886433443047 Q gi|254780901|r 192 YALVNPNRLDDLSGQGHLCA 211 (600) Q Consensus 192 ~aivNP~~~~~~~p~~~l~g 211 (600) +.|||--..+...|...|+- T Consensus 122 vPVINag~~~~~HPtQ~LaD 141 (310) T 3csu_A 122 VPVLNAGDGSNQHPTQTLLD 141 (310) T ss_dssp CCEEEEEETTSCCHHHHHHH T ss_pred CCEEECCCCCCCCCHHHHHH T ss_conf 87676778876471889987 No 188 >2h06_A Ribose-phosphate pyrophosphokinase I; PRS1, PRPP synthetase 1, phosphoribosyl pyrophosphate synthetase 1, transferase; 2.20A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h07_A 2h08_A Probab=39.73 E-value=15 Score=14.80 Aligned_cols=75 Identities=19% Similarity=0.260 Sum_probs=53.3 Q ss_pred CCCCEEEEECC--CC-CHHHHHHHHHHHHHHCCC-CEEEEECC--------CCCCCCCCCHHHHHHHHHC-CCCEEEEEC Q ss_conf 79979999407--88-615289999999997699-47998078--------7433668897898874202-686899964 Q gi|254780901|r 91 NSEKIMIFGDY--DV-DGAASVALMMRFLSHCSV-NANMYIPD--------RIVDGYGPNPSLMEKFINE-GAQLIITVD 157 (600) Q Consensus 91 ~~ekI~I~gDy--D~-DGitstail~~~L~~~g~-~v~~~IP~--------R~~eGYGl~~~~i~~~~~~-g~~LiItvD 157 (600) +++.+.|.... ++ |-+.-.-++..++++.|+ ++...+|- |+..|--++...+-++.+. |++-+||+| T Consensus 49 rg~dV~iiqs~~~~~nd~lmelll~i~alr~~~A~~It~ViPYl~YaRQDr~~~~ge~isak~va~lL~~~G~d~vit~D 128 (326) T 2h06_A 49 RGEDVYIVQSGCGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMD 128 (326) T ss_dssp BTCEEEEECCCCSCHHHHHHHHHHHHHHHHTTTBSEEEEEESSCTTTTCCSCSSSSCCCHHHHHHHHHHHHTCCEEEEES T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCEEEEEC T ss_conf 89858999589999466899999988888756887289998731343133133798865399999999870899799964 Q ss_pred CCCCCHHH Q ss_conf 88762345 Q gi|254780901|r 158 CGSTSYDA 165 (600) Q Consensus 158 ~Gi~~~e~ 165 (600) .-....+. T Consensus 129 lH~~~i~~ 136 (326) T 2h06_A 129 LHASQIQG 136 (326) T ss_dssp CSSGGGGG T ss_pred CCHHHHHH T ss_conf 88799842 No 189 >2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815} Probab=39.63 E-value=15 Score=14.79 Aligned_cols=43 Identities=5% Similarity=0.087 Sum_probs=25.4 Q ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCC Q ss_conf 89887420268689996488762345555541798279961544 Q gi|254780901|r 140 SLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 (600) Q Consensus 140 ~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~ 183 (600) +.++.+...+++=+|.+++..+ .+.++.+.+.|+.++..|.-. T Consensus 58 ~~i~~l~~~~vdgiIi~~~~~~-~~~~~~l~~~~ipvV~i~~~~ 100 (290) T 2rgy_A 58 EAVRFLIGRDCDGVVVISHDLH-DEDLDELHRMHPKMVFLNRAF 100 (290) T ss_dssp HHHHHHHHTTCSEEEECCSSSC-HHHHHHHHHHCSSEEEESSCC T ss_pred HHHHHHHHCCCCEEEEECCCCC-HHHHHHHHHCCCCEEEEECCC T ss_conf 9999998489988999656589-799999996499789990677 No 190 >1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesis, isomerase; HET: DGL; 1.75A {Bacillus subtilis} Probab=39.51 E-value=15 Score=14.78 Aligned_cols=81 Identities=20% Similarity=0.359 Sum_probs=49.9 Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC---------HHHHHHHHH-CCCCEEEEECCCCC Q ss_conf 99799994078861528999999999769947998078743366889---------789887420-26868999648876 Q gi|254780901|r 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN---------PSLMEKFIN-EGAQLIITVDCGST 161 (600) Q Consensus 92 ~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~---------~~~i~~~~~-~g~~LiItvD~Gi~ 161 (600) +++|.|| |--+-|+ +++.+..+.+-..-..|+-|...-.||-- .+.++.+.+ .|+++||. =|-+. T Consensus 3 ~~pIgvf-DSGvGGl---tvl~~l~~~lP~~~~iY~~D~~~~PYG~ks~~~i~~~~~~~~~~l~~~~~~~~IVI-ACNTa 77 (272) T 1zuw_A 3 EQPIGVI-DSGVGGL---TVAKEIMRQLPKENIIYVGDTKRCPYGPRPEEEVLQYTWELTNYLLENHHIKMLVI-ACNTA 77 (272) T ss_dssp TSCEEEE-ESSSTTH---HHHHHHHHHSTTCCEEEEECGGGCCCSSSCHHHHHHHHHHHHHHHHHHSCCSEEEE-CCHHH T ss_pred CCCEEEE-ECCCCHH---HHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE-CCCHH T ss_conf 9978999-8897679---99999998789998899966888998999999999999999999997179989997-66348 Q ss_pred CHHHHHHHHH-CCCCEE Q ss_conf 2345555541-798279 Q gi|254780901|r 162 SYDALQYATN-QGIDVI 177 (600) Q Consensus 162 ~~e~i~~a~~-~GidvI 177 (600) +.-.++.+++ .++.+| T Consensus 78 s~~al~~l~~~~~~pii 94 (272) T 1zuw_A 78 TAIALDDIQRSVGIPVV 94 (272) T ss_dssp HHHHHHHHHHHCSSCEE T ss_pred HHHHHHHHHHHCCCCEE T ss_conf 89999999986398666 No 191 >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 Probab=39.48 E-value=11 Score=15.80 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=19.8 Q ss_pred CCCCCHHHHHHHHHCCCCEEEECCC Q ss_conf 8876234555554179827996154 Q gi|254780901|r 158 CGSTSYDALQYATNQGIDVIVIDHH 182 (600) Q Consensus 158 ~Gi~~~e~i~~a~~~GidvIVtDHH 182 (600) ||+++.+.++.|.++|.|.|=.=++ T Consensus 6 CGit~~~d~~~~~~~gad~iGfif~ 30 (203) T 1v5x_A 6 CGITRLEDALLAEALGAFALGFVLA 30 (203) T ss_dssp CCCCCHHHHHHHHHHTCSEEEEECC T ss_pred CCCCCHHHHHHHHHCCCCEEEEECC T ss_conf 5899499999998279998999827 No 192 >2wdc_A SOXB, sulfur oxidation protein SOXB; sulfur-sulfur hydrolysis, sulfur oxidation pathway, Cys S-thiosulfonate, hydrolase; 1.50A {Thermus thermophilus} PDB: 2wdd_A* 2wde_A 2wdf_A Probab=39.25 E-value=15 Score=14.75 Aligned_cols=67 Identities=12% Similarity=0.113 Sum_probs=34.8 Q ss_pred CCCHHHHHHHHHHHH----HCCCCEEEE--ECCCCCH-----HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHH Q ss_conf 148799999999999----779979999--4078861-----52899999999976994799807874336688978988 Q gi|254780901|r 75 LTDCDKAARRIVQAI----YNSEKIMIF--GDYDVDG-----AASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143 (600) Q Consensus 75 l~dm~~A~~ri~~ai----~~~ekI~I~--gDyD~DG-----itstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~ 143 (600) +-++.+.+..|.+.. .++...++. ||.= .| .+...-+.+++..+|.++. .-.|-|+ || .+.+. T Consensus 101 vGG~arlatli~~~R~~~~a~~~n~LlldaGD~~-qGs~~s~~~~G~~~v~~mN~lG~Da~-~GNHEFd--~G--~~~L~ 174 (562) T 2wdc_A 101 IGGMGALTALIRDQKARVEAEGGKALVLDGGDTW-TNSGLSLLTRGEAVVRWQNLVGVDHM-VSHWEWT--LG--RERVE 174 (562) T ss_dssp BCCHHHHHHHHHHHHHHHHHTTCCEEEEECSCCS-SSSHHHHHHTTHHHHHHHHHHTCCEE-CCSGGGG--GC--HHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHHHHCCHHHHHHHHHCCCCEE-ECCCCCC--CC--HHHHH T ss_conf 6789999999999999986049987999679778-77188887488789999973697588-5362134--68--88899 Q ss_pred HHHH Q ss_conf 7420 Q gi|254780901|r 144 KFIN 147 (600) Q Consensus 144 ~~~~ 147 (600) ++.+ T Consensus 175 ~~~~ 178 (562) T 2wdc_A 175 ELLG 178 (562) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9997 No 193 >3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} PDB: 3gwg_A 3h1e_A 3h1f_A Probab=39.18 E-value=15 Score=14.74 Aligned_cols=12 Identities=17% Similarity=0.168 Sum_probs=4.5 Q ss_pred HHHHHHHHHCCC Q ss_conf 999999997699 Q gi|254780901|r 110 ALMMRFLSHCSV 121 (600) Q Consensus 110 ail~~~L~~~g~ 121 (600) .++...|+..|. T Consensus 19 ~~l~~~L~~~g~ 30 (129) T 3h1g_A 19 RIIKNTLSRLGY 30 (129) T ss_dssp HHHHHHHHHTTC T ss_pred HHHHHHHHHCCC T ss_conf 999999998699 No 194 >1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A Probab=39.15 E-value=15 Score=14.74 Aligned_cols=88 Identities=18% Similarity=0.162 Sum_probs=48.5 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHH--HHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEEC Q ss_conf 9999999999779979999407886152899--99999997699479980787433668897898874202686899964 Q gi|254780901|r 80 KAARRIVQAIYNSEKIMIFGDYDVDGAASVA--LMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 (600) Q Consensus 80 ~A~~ri~~ai~~~ekI~I~gDyD~DGitsta--il~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD 157 (600) +.++++.+.+.+.++|.+|| + |.++.. -+..-|..+|.++.++- + +.. ..+.+ -+++|.+. T Consensus 25 ~~i~~~~~~i~~a~~I~i~G---~-G~S~~~a~~~~~~l~~lg~~~~~~~-~-----~~~-----~~l~~--~Dl~I~iS 87 (186) T 1m3s_A 25 EEADQLADHILSSHQIFTAG---A-GRSGLMAKSFAMRLMHMGFNAHIVG-E-----ILT-----PPLAE--GDLVIIGS 87 (186) T ss_dssp HHHHHHHHHHHHCSCEEEEC---S-HHHHHHHHHHHHHHHHTTCCEEETT-S-----TTC-----CCCCT--TCEEEEEC T ss_pred HHHHHHHHHHHCCCEEEEEE---C-CHHHHHHHHHHHHHHHCCCCCCCCC-C-----HHC-----CCCCC--CCEEEEEC T ss_conf 99999999997499699997---8-7899999999999985387667788-1-----002-----57999--99999983 Q ss_pred C-CCC--CHHHHHHHHHCCCCEEE-ECCCCC Q ss_conf 8-876--23455555417982799-615447 Q gi|254780901|r 158 C-GST--SYDALQYATNQGIDVIV-IDHHQV 184 (600) Q Consensus 158 ~-Gi~--~~e~i~~a~~~GidvIV-tDHH~~ 184 (600) . |-+ -.+.++.|+++|+.+|. |+.... T Consensus 88 ~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s 118 (186) T 1m3s_A 88 GSGETKSLIHTAAKAKSLHGIVAALTINPES 118 (186) T ss_dssp SSSCCHHHHHHHHHHHHTTCEEEEEESCTTS T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 8975146999999999879959999799999 No 195 >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* Probab=39.06 E-value=15 Score=14.73 Aligned_cols=93 Identities=11% Similarity=0.210 Sum_probs=45.6 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEE Q ss_conf 87999999999997799799994078861528999999999769947998078743366889789887420268689996 Q gi|254780901|r 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 (600) Q Consensus 77 dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItv 156 (600) +|.....-+....+.+..|++-. ++=|-| ..++.+.|..+|.++.++=|. +.+.+++++..++++|.. T Consensus 88 GmaAi~~~l~~l~~~Gd~vv~~~--~~Yg~t-~~~~~~~~~~~Gi~~~~~d~~--------d~~~~~~ai~~~Tklv~~- 155 (398) T 2rfv_A 88 GISAITTTLLTLCQQGDHIVSAS--AIYGCT-HAFLSHSMPKFGINVRFVDAA--------KPEEIRAAMRPETKVVYI- 155 (398) T ss_dssp HHHHHHHHHHHHCCTTCEEEEES--SSCHHH-HHHHHTHHHHTTCEEEEECTT--------SHHHHHHHCCTTEEEEEE- T ss_pred HHHHHHHHHHHHCCCCCEEEEEE--CCCCCH-HHHHHHHCCCCCEEEECCCCC--------CHHHHHHHCCCCCCEEEE- T ss_conf 99999999998446999899841--235521-367775412486477537999--------999999847887708997- Q ss_pred CCC------CCCHHHH-HHHHHCCCCEEEECCC Q ss_conf 488------7623455-5554179827996154 Q gi|254780901|r 157 DCG------STSYDAL-QYATNQGIDVIVIDHH 182 (600) Q Consensus 157 D~G------i~~~e~i-~~a~~~GidvIVtDHH 182 (600) ..= +.+.+++ +.|++.|+-+ |+|.- T Consensus 156 Esp~NP~l~v~Di~~ia~ia~~~gi~~-vVDNT 187 (398) T 2rfv_A 156 ETPANPTLSLVDIETVAGIAHQQGALL-VVDNT 187 (398) T ss_dssp ESSBTTTTBCCCHHHHHHHHHHTTCEE-EEECT T ss_pred ECCCCCCCCCCCCHHHHHHHHHCCCEE-EECCC T ss_conf 079998756357689999974439879-96276 No 196 >1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* Probab=39.04 E-value=15 Score=14.73 Aligned_cols=81 Identities=12% Similarity=0.136 Sum_probs=48.8 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC------------CCCCCCCHHHHHH Q ss_conf 8799999999999779979999407886152899999999976994799807874------------3366889789887 Q gi|254780901|r 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI------------VDGYGPNPSLMEK 144 (600) Q Consensus 77 dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~------------~eGYGl~~~~i~~ 144 (600) .-+..++++.+.+.+-++-+|+....+..--+..-+.++...+++-+......+. .-|+..+.. ... T Consensus 192 ~~~~~i~~~~~~l~~a~~P~ii~G~~~~~~~~~~~l~~la~~~~~pv~~~~~~~g~~~~~~~~~~~g~~g~~~~~~-~~~ 270 (566) T 1ozh_A 192 APDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAGAVNQDNFSRFAGRVGLFNNQA-GDR 270 (566) T ss_dssp SCHHHHHHHHHHHHHCSSEEEEECGGGGSGGGHHHHHHHHHHHCCCEEECGGGTTTCCTTTCTTEEEECSSBTTCH-HHH T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHH-HHC T ss_conf 9989999999999847698402688654521157788776522886210233367644566531231468768867-623 Q ss_pred HHHCCCCEEEEECCC Q ss_conf 420268689996488 Q gi|254780901|r 145 FINEGAQLIITVDCG 159 (600) Q Consensus 145 ~~~~g~~LiItvD~G 159 (600) +.. .+++++.+.+- T Consensus 271 ~~~-~~D~il~~G~~ 284 (566) T 1ozh_A 271 LLQ-LADLVICIGYS 284 (566) T ss_dssp HHH-HCSEEEEESCC T ss_pred CCC-CCCEEEECCCC T ss_conf 565-03157764865 No 197 >2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens} Probab=39.01 E-value=15 Score=14.72 Aligned_cols=11 Identities=9% Similarity=0.380 Sum_probs=4.1 Q ss_pred HHHHCCCCEEE Q ss_conf 55417982799 Q gi|254780901|r 168 YATNQGIDVIV 178 (600) Q Consensus 168 ~a~~~GidvIV 178 (600) .++++||..|| T Consensus 40 ~L~~~gI~~Vi 50 (188) T 2esb_A 40 MLSSNQITMVI 50 (188) T ss_dssp HHHHTTCCEEE T ss_pred HHHHCCCEEEE T ss_conf 99985985999 No 198 >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, structural genomics, center for structural genomics of infectious diseases; 2.05A {Francisella tularensis subsp} Probab=38.88 E-value=15 Score=14.71 Aligned_cols=95 Identities=14% Similarity=0.198 Sum_probs=50.5 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC--C--CEEEEECCCCCCCCCCCHHHHHHHHHCCCCE Q ss_conf 87999999999997799799994078861528999999999769--9--4799807874336688978988742026868 Q gi|254780901|r 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS--V--NANMYIPDRIVDGYGPNPSLMEKFINEGAQL 152 (600) Q Consensus 77 dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g--~--~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~L 152 (600) .+++.++++.++--..=.|=|.=-.-|..+|-..-+.+.++..+ . ++...+-+ ....++++.+.|++. T Consensus 41 ~l~~~i~~l~~~g~d~iHiDImDG~FVpn~t~g~~~i~~ir~~~~~~~idvHLMv~~--------P~~~i~~~~~~g~d~ 112 (246) T 3inp_A 41 RLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKP--------VDALIESFAKAGATS 112 (246) T ss_dssp GHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSS--------CHHHHHHHHHHTCSE T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEHHHCCC--------HHHHHHHHHHCCCCE T ss_conf 999999999976999899975048537655579899999997089840552101079--------999999998679979 Q ss_pred EEE-ECCCCCCHHHHHHHHHCCCCEEEE Q ss_conf 999-648876234555554179827996 Q gi|254780901|r 153 IIT-VDCGSTSYDALQYATNQGIDVIVI 179 (600) Q Consensus 153 iIt-vD~Gi~~~e~i~~a~~~GidvIVt 179 (600) |+. +.+...-.+.+.++++.|+.+-+. T Consensus 113 I~~H~E~~~~~~~~i~~ik~~g~k~Gla 140 (246) T 3inp_A 113 IVFHPEASEHIDRSLQLIKSFGIQAGLA 140 (246) T ss_dssp EEECGGGCSCHHHHHHHHHTTTSEEEEE T ss_pred EEEECCCCCCHHHHHHHHHHCCCEEEEE T ss_conf 9984202108999999999819817999 No 199 >1zgz_A Torcad operon transcriptional regulatory protein TORR; two-component system, gene regulation, transcription factor, TMAO respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1 Probab=38.79 E-value=15 Score=14.70 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=10.7 Q ss_pred HHHHHHHHCCCCEEEECCCCCC Q ss_conf 4555554179827996154476 Q gi|254780901|r 164 DALQYATNQGIDVIVIDHHQVK 185 (600) Q Consensus 164 e~i~~a~~~GidvIVtDHH~~~ 185 (600) ++.+.+++.-.|+||+|.+.|. T Consensus 37 ~a~~~l~~~~~dliilD~~mP~ 58 (122) T 1zgz_A 37 GLREIMQNQSVDLILLDINLPD 58 (122) T ss_dssp HHHHHHHHSCCSEEEEESCCSS T ss_pred HHHHHHHCCCCCEEEEECCCCC T ss_conf 9999997399989999789899 No 200 >1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of glycosyl hydrolase, cellulose degradation; 1.60A {Clostridium cellulolyticum H10} SCOP: c.1.8.3 Probab=38.58 E-value=15 Score=14.67 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=18.6 Q ss_pred HHHHHHHHCCCCEEEECCCCCC Q ss_conf 4555554179827996154476 Q gi|254780901|r 164 DALQYATNQGIDVIVIDHHQVK 185 (600) Q Consensus 164 e~i~~a~~~GidvIVtDHH~~~ 185 (600) +-|++|.+.||.|||.=||.+. T Consensus 105 ~vV~~a~~~Gl~vIldlH~~~~ 126 (380) T 1edg_A 105 EVVNYCIDNKMYVILNTHHDVD 126 (380) T ss_dssp HHHHHHHTTTCEEEEECCSCBC T ss_pred HHHHHHHHCCCEEEEECCCCCC T ss_conf 9999999889989996377777 No 201 >2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ... Probab=38.53 E-value=15 Score=14.67 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=58.9 Q ss_pred HCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC-HHHHH----HH--- Q ss_conf 61487999999999997799799994078861528999999999769947998078743366889-78988----74--- Q gi|254780901|r 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN-PSLME----KF--- 145 (600) Q Consensus 74 ~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~-~~~i~----~~--- 145 (600) .+.-+.+|..-|.+...++.+|++.|---. +..++.++....| .+||.+|..-| .|+ -..+. .+ T Consensus 47 T~~~L~~A~~~i~~i~~~~g~iLfVgTk~~----~~~~v~~~A~~~~---~~yvn~RWlgG-~LTN~~~i~~~i~~l~~l 118 (256) T 2vqe_B 47 TMEELERTFRFIEDLAMRGGTILFVGTKKQ----AQDIVRMEAERAG---MPYVNQRWLGG-MLTNFKTISQRVHRLEEL 118 (256) T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEECCSSS----STTTTTTTTTSSS---CCEECSCCCTT-TTTTHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCHH----HHHHHHHHHHHHC---CCEEECCCCCC-CCCCHHHHHHHHHHHHHH T ss_conf 999999999999988517986999957599----9999999999959---93362441287-501746665676543577 Q ss_pred ------------------------------------HHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEE-ECCCCC Q ss_conf ------------------------------------202686899964887623455555417982799-615447 Q gi|254780901|r 146 ------------------------------------INEGAQLIITVDCGSTSYDALQYATNQGIDVIV-IDHHQV 184 (600) Q Consensus 146 ------------------------------------~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIV-tDHH~~ 184 (600) ...-++++|.+|.. .+.-+|..|+.+||-||= +|-... T Consensus 119 ~~~~~~~~~~~l~Kke~~~~~~~~~kl~~~~~Gi~~m~~~Pd~v~v~d~~-~~~~AI~EA~~l~IPvIaivDTn~~ 193 (256) T 2vqe_B 119 EALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPT-KEAIAVREARKLFIPVIALADTDSD 193 (256) T ss_dssp HHHTTSTTSSCSCHHHHTTHHHHHHHHHHHSTTGGGCSSCCSEEEESCTT-TTHHHHHHHHHTTCCCEECCCTTSC T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCC-HHHHHHHHHHHHCCCEEEEECCCCC T ss_conf 75512452012560688886789999998615752224689779963775-0088999999858955776138988 No 202 >1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A* Probab=38.40 E-value=15 Score=14.65 Aligned_cols=27 Identities=7% Similarity=0.102 Sum_probs=11.9 Q ss_pred CHHHCCCHHHHHHHHHHHHHCCCCEEE Q ss_conf 955614879999999999977997999 Q gi|254780901|r 71 DPLILTDCDKAARRIVQAIYNSEKIMI 97 (600) Q Consensus 71 dP~~l~dm~~A~~ri~~ai~~~ekI~I 97 (600) +|.-..-+.+.++.+.+...++.-|.- T Consensus 109 sp~y~~~~~~~~~~l~~ry~~~p~v~~ 135 (645) T 1kwg_A 109 SPVYREEARRIVTLLAERYGGLEAVAG 135 (645) T ss_dssp CHHHHHHHHHHHHHHHHHHTTCTTEEE T ss_pred CHHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 999999999999999998589971899 No 203 >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Probab=38.34 E-value=15 Score=14.65 Aligned_cols=71 Identities=15% Similarity=0.244 Sum_probs=45.0 Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH Q ss_conf 79979999407886152899999999976994799807874336688978988742026868999648876234555554 Q gi|254780901|r 91 NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYAT 170 (600) Q Consensus 91 ~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~ 170 (600) ..+||+|+| +=|-.+..++-..|++ |.+|....-+. +-.......+..++ .+..++.+.+..+- T Consensus 2 ~~kkIlV~G---atG~iG~~l~~~ll~~-g~~V~~~~R~~---------~~~~~~~~~~~~~v---~~D~~d~~~l~~a~ 65 (206) T 1hdo_A 2 AVKKIAIFG---ATGQTGLTTLAQAVQA-GYEVTVLVRDS---------SRLPSEGPRPAHVV---VGDVLQAADVDKTV 65 (206) T ss_dssp CCCEEEEES---TTSHHHHHHHHHHHHT-TCEEEEEESCG---------GGSCSSSCCCSEEE---ESCTTSHHHHHHHH T ss_pred CCCEEEEEC---CCCHHHHHHHHHHHHC-CCEEEEEECCH---------HHCCCCCCCCCEEE---EECCCHHHHHHHHH T ss_conf 988899999---9868999999999978-69899998483---------65654335661589---60243367899997 Q ss_pred HCCCCEEE Q ss_conf 17982799 Q gi|254780901|r 171 NQGIDVIV 178 (600) Q Consensus 171 ~~GidvIV 178 (600) .|.|++| T Consensus 66 -~~~d~Vi 72 (206) T 1hdo_A 66 -AGQDAVI 72 (206) T ss_dssp -TTCSEEE T ss_pred -CCCCEEE T ss_conf -6997999 No 204 >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X- RAY crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 Probab=38.32 E-value=15 Score=14.64 Aligned_cols=28 Identities=21% Similarity=0.120 Sum_probs=15.1 Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 799994078861528999999999769947998 Q gi|254780901|r 94 KIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126 (600) Q Consensus 94 kI~I~gDyD~DGitstail~~~L~~~g~~v~~~ 126 (600) ||.|+| + |..++++. +.|+..|.+|..| T Consensus 2 kI~iIG---~-G~mG~sla-~~L~~~g~~V~~~ 29 (279) T 2f1k_A 2 KIGVVG---L-GLIGASLA-GDLRRRGHYLIGV 29 (279) T ss_dssp EEEEEC---C-SHHHHHHH-HHHHHTTCEEEEE T ss_pred EEEEEE---E-CHHHHHHH-HHHHHCCCEEEEE T ss_conf 899990---3-99999999-9999688979999 No 205 >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A Probab=38.21 E-value=12 Score=15.55 Aligned_cols=21 Identities=24% Similarity=0.588 Sum_probs=18.5 Q ss_pred CCCCCHHHHHHHHHCCCCEEE Q ss_conf 887623455555417982799 Q gi|254780901|r 158 CGSTSYDALQYATNQGIDVIV 178 (600) Q Consensus 158 ~Gi~~~e~i~~a~~~GidvIV 178 (600) ||+++.+.++++.++|.|.|= T Consensus 7 CGit~~~d~~~~~~~g~d~iG 27 (205) T 1nsj_A 7 CGITNLEDALFSVESGADAVG 27 (205) T ss_dssp CCCCSHHHHHHHHHHTCSEEE T ss_pred CCCCCHHHHHHHHHCCCCEEE T ss_conf 289959999999967999897 No 206 >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* Probab=38.20 E-value=15 Score=14.63 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=12.1 Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEE Q ss_conf 997999940788615289999999997699479 Q gi|254780901|r 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 (600) Q Consensus 92 ~ekI~I~gDyD~DGitstail~~~L~~~g~~v~ 124 (600) .++|.+.| . |-|+-+=|.++|...|++|. T Consensus 18 ~k~i~~iG---i-ggsG~s~lA~~l~~~G~~V~ 46 (475) T 1p3d_A 18 VQQIHFIG---I-GGAGMSGIAEILLNEGYQIS 46 (475) T ss_dssp CCEEEEET---T-TSTTHHHHHHHHHHHTCEEE T ss_pred CCEEEEEE---E-CHHHHHHHHHHHHHCCCEEE T ss_conf 77799998---4-69999999999996889499 No 207 >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* Probab=38.04 E-value=16 Score=14.61 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=35.2 Q ss_pred EEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEE------CCCCHHHHHHHHHHHHHH Q ss_conf 9864898618888885303353011565322231464------222158899999999986 Q gi|254780901|r 412 SGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTV------ERVNFGRLCDFFQKFAHN 466 (600) Q Consensus 412 S~RSi~g~~l~~~l~~~~~~~ll~~~GGH~~AaG~ti------~~~~l~~f~~~l~~~~~~ 466 (600) +.+-+++++-.++.+.+.++++ .-.+||.-..||.| ..++++.|.+.++++.++ T Consensus 301 ~~~~p~~~~~~~~~~~l~~~Gi-~i~~G~~~~g~~RIs~~~~~t~edi~~Li~~l~~~~~~ 360 (362) T 2c0r_A 301 TFRLASEELEKEFVKASEQEGF-VGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRS 360 (362) T ss_dssp EEECSCHHHHHHHHHHHHHTTE-ESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH T ss_pred EEECCCCCCHHHHHHHHHHCCC-EEECCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH T ss_conf 9977982369999999997888-84048885781889804889999999999999999996 No 208 >3lte_A Response regulator; structural genomics, PSI, protein structure initiative, nysgrc, NEW YORK structural genomix research consortium; 2.00A {Bermanella marisrubri} Probab=37.92 E-value=16 Score=14.60 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=43.1 Q ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHH Q ss_conf 99779979999407886152899999999976994799807874336688978988742026868999648876234555 Q gi|254780901|r 88 AIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQ 167 (600) Q Consensus 88 ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~ 167 (600) ++++.+||+|.= |--+...++.+.|+..|.+|... .+| .++++.+.+..+++|| +|......+.++ T Consensus 2 ~~~~~krILiVD----Dd~~~~~~l~~~L~~~g~~v~~a-----~~g----~eal~~l~~~~pdlil-lD~~mP~~dG~e 67 (132) T 3lte_A 2 SLKQSKRILVVD----DDQAMAAAIERVLKRDHWQVEIA-----HNG----FDAGIKLSTFEPAIMT-LDLSMPKLDGLD 67 (132) T ss_dssp -----CEEEEEC----SCHHHHHHHHHHHHHTTCEEEEE-----SSH----HHHHHHHHHTCCSEEE-EESCBTTBCHHH T ss_pred CCCCCCEEEEEE----CCHHHHHHHHHHHHHCCCEEEEE-----CCH----HHHHHHHHHCCCCEEE-EECCCCCCCHHH T ss_conf 988898699997----99999999999999889999998-----899----9999999747999999-968987888999 Q ss_pred HHH Q ss_conf 554 Q gi|254780901|r 168 YAT 170 (600) Q Consensus 168 ~a~ 170 (600) .++ T Consensus 68 l~~ 70 (132) T 3lte_A 68 VIR 70 (132) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 209 >1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A Probab=37.86 E-value=16 Score=14.59 Aligned_cols=55 Identities=20% Similarity=0.161 Sum_probs=34.3 Q ss_pred HHHHHHHHCCCHHHHHHHHHCCCC-HHHHHHHCCCCHHHCCCCHHHCCCHHHHHHHHHHHH Q ss_conf 999998819999999999967889-789886619667771899556148799999999999 Q gi|254780901|r 30 ALAITQKHAIPDIVARVLVNRNVS-IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAI 89 (600) Q Consensus 30 ~~~l~~~~~~~~~~a~iL~~Rgi~-~~~~~~fL~p~l~~l~~dP~~l~dm~~A~~ri~~ai 89 (600) ...+.+.+++++.+|++|+.-||+ .+++- |. ...++. .-..| |-+.|-+...+|. T Consensus 5 ~~~F~e~LdvDe~iA~lLv~EGF~siEeIA-y~--~~~eL~-~Iegf-Dee~a~eL~~RA~ 60 (70) T 1u9l_A 5 IDTFTKYLDIDEDFATVLVEEGFSTLEELA-YV--PMKELL-EIEGL-DEPTVEALRERAK 60 (70) T ss_dssp HHHHHHHHTCCHHHHHHHHHTTCCCHHHHH-HS--CHHHHT-TSTTC-CHHHHHHHHHHHH T ss_pred HHHHHHHCCCCHHHHHHHHHHCCCCHHHHH-CC--CHHHHH-HCCCC-CHHHHHHHHHHHH T ss_conf 999999848639999999986559799987-59--999997-63155-8999999999999 No 210 >2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.25A {Homo sapiens} Probab=37.84 E-value=11 Score=15.74 Aligned_cols=42 Identities=10% Similarity=0.005 Sum_probs=24.3 Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCCCCCCC-CCCCCCCEEECCCCHHHHHHHHHH Q ss_conf 799986489861888888530335301156-532223146422215889999999 Q gi|254780901|r 409 GIGSGRSIEGFDIGKMVSFAVEEGILVKGG-GHAMAAGLTVERVNFGRLCDFFQK 462 (600) Q Consensus 409 ~kGS~RSi~g~~l~~~l~~~~~~~ll~~~G-GH~~AaG~ti~~~~l~~f~~~l~~ 462 (600) ..-|.+-+++++ +|+..+.+ || ||..+ |-.++.....+++++ T Consensus 339 pil~v~~V~~~d--EAI~hiN~------~gsgHt~~----IiTed~~~a~~F~~~ 381 (463) T 2h5g_A 339 LELCIEVVDNVQ--DAIDHIHK------YGSSHTDV----IVTEDENTAEFFLQH 381 (463) T ss_dssp SEEEEEEESSHH--HHHHHHHH------HCCSSEEE----EECSCHHHHHHHHHH T ss_pred CCCEEEEECCHH--HHHHHHHH------HCCCCCEE----EEECCHHHHHHHHHH T ss_conf 765089959999--99999998------68998708----997999999999985 No 211 >1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A Probab=37.76 E-value=16 Score=14.58 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=12.5 Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCC Q ss_conf 9979999407886152899999999976994 Q gi|254780901|r 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 (600) Q Consensus 92 ~ekI~I~gDyD~DGitstail~~~L~~~g~~ 122 (600) +=||+|.= |-.+...++...|+..|.. T Consensus 6 ~lrILiVD----D~~~~~~~l~~~L~~~g~~ 32 (129) T 1p6q_A 6 KIKVLIVD----DQVTSRLLLGDALQQLGFK 32 (129) T ss_dssp CCCEEEEC----SSHHHHHHHHHHHHTTTCS T ss_pred CCEEEEEE----CCHHHHHHHHHHHHHCCCE T ss_conf 88899995----9899999999999987992 No 212 >2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* Probab=37.43 E-value=14 Score=14.86 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=23.6 Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHC Q ss_conf 9979999407886152899999999976 Q gi|254780901|r 92 SEKIMIFGDYDVDGAASVALMMRFLSHC 119 (600) Q Consensus 92 ~ekI~I~gDyD~DGitstail~~~L~~~ 119 (600) =.+|+|..|-|+||.--..+|..|+-.+ T Consensus 114 Yg~i~imtD~D~DG~hI~~Lll~ff~~~ 141 (767) T 2xkj_E 114 YGKICILADADSDGLHIATLLCALFVKH 141 (767) T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHH T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH T ss_conf 7847999789977037999999999987 No 213 >2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori} Probab=37.30 E-value=16 Score=14.53 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=36.4 Q ss_pred EEEEEEECCCCCCHHHHHHCCCCCEEEEEEEEEEEEECCC-----CEEEEEEEEEEECCC Q ss_conf 7999997787870123553069987999999766545781-----105899998011131 Q gi|254780901|r 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGS-----KRCQLRVLDASPVEG 594 (600) Q Consensus 540 ~i~aI~Fn~~~~~~~~~~~~~~g~~idii~~l~~N~~~G~-----~s~QL~I~Di~p~e~ 594 (600) .+.+..|+.....+.++ ...|..+-|.++|+.+.|.++ ..+++.+.+|...+. T Consensus 50 ~~~v~~~g~~ae~~~~~--l~KG~~V~V~G~l~~~~~~~kdG~~~~~~~i~~~~i~~l~~ 107 (134) T 2vw9_A 50 FIDARLFGRTAEIANQY--LSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDK 107 (134) T ss_dssp EEEEEEEHHHHHHHHHH--CCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCC T ss_pred EEEEEEEHHHHHHHHHH--CCCCCEEEEEEEEEECEEECCCCCEEEEEEEEEEEEEECCC T ss_conf 88667861144332342--20996999998888551699999899999999989998557 No 214 >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Probab=37.28 E-value=16 Score=14.53 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=17.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 998999999999999999999987 Q gi|254780901|r 336 LDVLNQNRRLMESAMLEQAEAKVL 359 (600) Q Consensus 336 L~~lN~~Rk~~e~~i~~~a~~~~~ 359 (600) |+.+.++||...+.+...+..... T Consensus 348 L~~Ye~eRrp~a~~~~~~s~~~~~ 371 (535) T 3ihg_A 348 LDTYEDERKVAAELVVAEALAIYA 371 (535) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999888 No 215 >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus HB8} PDB: 2yri_A* Probab=37.26 E-value=16 Score=14.53 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=34.2 Q ss_pred EECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCE---E-----ECCCCHHHHHHHHHHHH Q ss_conf 8648986188888853033530115653222314---6-----42221588999999999 Q gi|254780901|r 413 GRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGL---T-----VERVNFGRLCDFFQKFA 464 (600) Q Consensus 413 ~RSi~g~~l~~~l~~~~~~~ll~~~GGH~~AaG~---t-----i~~~~l~~f~~~l~~~~ 464 (600) .+.++|+|-.++...+.++++.+..|.|..+.|+ | -.+++++.|.+.|.+.. T Consensus 291 ~~~~~~~d~~~~~~~L~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edv~~ll~al~~~L 350 (353) T 2yrr_A 291 VRPPEGVDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRAL 350 (353) T ss_dssp EECCTTCCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHH T ss_pred EECCCCCCHHHHHHHHHHCCEEEECCCHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH T ss_conf 979999899999999997892998175564499899837857898999999999999998 No 216 >3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A Probab=36.75 E-value=16 Score=14.47 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=23.7 Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHC--C-CCEEEEECCCCCCHHHHHHHHHCCCCEE Q ss_conf 99479980787433668897898874202--6-8689996488762345555541798279 Q gi|254780901|r 120 SVNANMYIPDRIVDGYGPNPSLMEKFINE--G-AQLIITVDCGSTSYDALQYATNQGIDVI 177 (600) Q Consensus 120 g~~v~~~IP~R~~eGYGl~~~~i~~~~~~--g-~~LiItvD~Gi~~~e~i~~a~~~GidvI 177 (600) |.++...||-+-.+.| =...++.+.+. + ..-||.||.||++.- .+.+++.|..++ T Consensus 47 ~~~vSVVIP~yNE~~~--I~~~l~si~~~~~~~~~EIIVVDDgStD~T-~ei~~~~~a~v~ 104 (329) T 3ckj_A 47 GRTISVVLPALDEEDT--IGSVIDSISPLVDGLVDELIVLDSGSTDDT-EIRAVAAGARVV 104 (329) T ss_dssp TCCEEEEEEESSCTTT--HHHHHHHHGGGBTTTBSEEEEEECSCCSSH-HHHHHHTTCEEE T ss_pred CCEEEEEEECCCCHHH--HHHHHHHHHHHCCCCCCEEEEEECCCCHHH-HHHHHHHHCCCC T ss_conf 9979999805878889--999999998634699858999989794408-999999625015 No 217 >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, , isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Probab=36.59 E-value=16 Score=14.45 Aligned_cols=34 Identities=9% Similarity=0.138 Sum_probs=18.9 Q ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 97799799994078861528999999999769947998 Q gi|254780901|r 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126 (600) Q Consensus 89 i~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~ 126 (600) -..+++|+|-| +-|.-++.+....++ -|.+|... T Consensus 8 ~~~~K~ILITG---atGFIGs~Lv~~Ll~-~g~~V~~i 41 (699) T 1z45_A 8 ESTSKIVLVTG---GAGYIGSHTVVELIE-NGYDCVVA 41 (699) T ss_dssp ---CCEEEEET---TTSHHHHHHHHHHHH-TTCEEEEE T ss_pred CCCCCEEEEEC---CCCHHHHHHHHHHHH-CCCEEEEE T ss_conf 79999899958---984899999999997-86969999 No 218 >2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens} Probab=36.53 E-value=16 Score=14.44 Aligned_cols=51 Identities=14% Similarity=0.283 Sum_probs=28.4 Q ss_pred CEEEEECCCCCCCCCC-CHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCE Q ss_conf 4799807874336688-978988742026868999648876234555554179827 Q gi|254780901|r 122 NANMYIPDRIVDGYGP-NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDV 176 (600) Q Consensus 122 ~v~~~IP~R~~eGYGl-~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~Gidv 176 (600) +.++.+|.++--+-.. +..-++.+.+.|++.||++- ...........|++. T Consensus 8 ~f~wI~pg~l~g~~~P~~~~~~~~l~~~gI~~Vv~l~----~~~~~~~~~~~~i~~ 59 (151) T 2img_A 8 NFSWVLPGRLAGLALPRLPAHYQFLLDLGVRHLVSLT----ERGPPHSDSCPGLTL 59 (151) T ss_dssp TCEEEETTTEEEESCCCSHHHHHHHHHTTEEEEEECS----SSCCTTGGGCTTSEE T ss_pred CCCEECCCEEEEECCCCCHHHHHHHHHCCCCEEEECC----CCCCCCHHHCCCCEE T ss_conf 9978807989998999997999999976999999837----999870464199479 No 219 >3cu5_A Two component transcriptional regulator, ARAC family; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg} Probab=36.37 E-value=16 Score=14.43 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=8.0 Q ss_pred HHHHHHHH-HHHHHHH-HCEEEEEE Q ss_conf 12222227-8998842-01079988 Q gi|254780901|r 380 PGIVGLLA-ARLKEKF-GRPSFAIS 402 (600) Q Consensus 380 ~GViGIVA-srL~e~y-~kP~iv~s 402 (600) +|.-|+-. .++.+.+ .-|+|++| T Consensus 60 P~~dG~el~~~i~~~~p~~~iI~lT 84 (141) T 3cu5_A 60 PRMDGIELVDNILKLYPDCSVIFMS 84 (141) T ss_dssp SSSCHHHHHHHHHHHCTTCEEEEEC T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEE T ss_conf 9999999999999758799399997 No 220 >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Probab=36.36 E-value=16 Score=14.42 Aligned_cols=71 Identities=14% Similarity=0.226 Sum_probs=47.3 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCC Q ss_conf 9999999997799799994078861528999999999769947998078743366889789887420268689996488 Q gi|254780901|r 81 AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG 159 (600) Q Consensus 81 A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~G 159 (600) +...+.+.. ..+++.|| |.-...+--+++.|...|..+..+-...-.+ -....++.+.....+++|+.|.. T Consensus 20 ~L~~ll~~~-~~~k~iIF----~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~---~r~~~~~~f~~~~~~iLv~Td~~ 90 (165) T 1fuk_A 20 CLTDLYDSI-SVTQAVIF----CNTRRKVEELTTKLRNDKFTVSAIYSDLPQQ---ERDTIMKEFRSGSSRILISTDLL 90 (165) T ss_dssp HHHHHHHHT-TCSCEEEE----ESSHHHHHHHHHHHHHTTCCEEEECTTSCHH---HHHHHHHHHHTTSCSEEEEEGGG T ss_pred HHHHHHHHC-CCCCEEEE----EEEHHHHHHHHHHHHHCCCCEEEEECCCCHH---HHHHHHHHHHCCCCCEEEEEHHH T ss_conf 999999847-99839999----9176779999999985799789996999999---99999999853887557731254 No 221 >3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica} Probab=36.28 E-value=16 Score=14.42 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=8.4 Q ss_pred HHHHHHHHHHHHHCCCCEEEE Q ss_conf 799999999999779979999 Q gi|254780901|r 78 CDKAARRIVQAIYNSEKIMIF 98 (600) Q Consensus 78 m~~A~~ri~~ai~~~ekI~I~ 98 (600) +++|++.|.++++++++++|+ T Consensus 73 ~~~a~~fI~~~~~~~~~VLVH 93 (161) T 3emu_A 73 IPNAIKFIIRSIQRKEGVLII 93 (161) T ss_dssp HHHHHHHHHHHHHTTCEEEEE T ss_pred HHHHHHHHHHHHCCCCEEEEE T ss_conf 999999999876169779998 No 222 >2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} Probab=36.22 E-value=16 Score=14.41 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=8.4 Q ss_pred CCCHHHHHHHHHHHHHH Q ss_conf 44304788999999999 Q gi|254780901|r 206 QGHLCAAGVVFLVLVLI 222 (600) Q Consensus 206 ~~~l~gaGvaf~l~~al 222 (600) -.+-.|-||+|....++ T Consensus 227 r~~ATG~Gv~~~~~~~l 243 (470) T 2bma_A 227 RVEATGYGLVYFVLEVL 243 (470) T ss_dssp TTTHHHHHHHHHHHHHH T ss_pred CCEEEEEEEHHHHHHHH T ss_conf 87068986389999999 No 223 >2qy9_A Cell division protein FTSY; SRP receptor, protein targeting, simibi class GTPase, cell cycle, GTP-binding, inner membrane, membrane; 1.90A {Escherichia coli} SCOP: a.24.13.1 c.37.1.10 PDB: 1fts_A Probab=35.96 E-value=17 Score=14.38 Aligned_cols=14 Identities=29% Similarity=0.517 Sum_probs=7.1 Q ss_pred HHHHHHCEEEEEEE Q ss_conf 98842010799886 Q gi|254780901|r 390 LKEKFGRPSFAISF 403 (600) Q Consensus 390 L~e~y~kP~iv~s~ 403 (600) ++..++.|+..++. T Consensus 266 ~~~~~~~Pi~fig~ 279 (309) T 2qy9_A 266 VADQFGIPIRYIGV 279 (309) T ss_dssp HHHHHCCCEEEEEC T ss_pred HHHHHCCCEEEEEC T ss_conf 99998979799968 No 224 >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; 2.60A {Homo sapiens} Probab=35.83 E-value=17 Score=14.36 Aligned_cols=65 Identities=17% Similarity=0.321 Sum_probs=43.9 Q ss_pred HHHHHH-HCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCH----HHHHHHHHCCCCEEEEECC Q ss_conf 999999-77997999940788615289999999997699479980787433668897----8988742026868999648 Q gi|254780901|r 84 RIVQAI-YNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP----SLMEKFINEGAQLIITVDC 158 (600) Q Consensus 84 ri~~ai-~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~----~~i~~~~~~g~~LiItvD~ 158 (600) .|.+.+ ++.+|+.|| |.....+-.|++.|+..|..+..+-. +++. .+++.+.....+++|+.|. T Consensus 45 ~L~~~l~~~~~kvlIF----~~~~~~~~~l~~~L~~~g~~~~~ihg-------~~~~~eR~~~~~~f~~g~~~ilv~t~~ 113 (191) T 2p6n_A 45 YLLECLQKTPPPVLIF----AEKKADVDAIHEYLLLKGVEAVAIHG-------GKDQEERTKAIEAFREGKKDVLVATDV 113 (191) T ss_dssp HHHHHHTTSCSCEEEE----CSCHHHHHHHHHHHHHHTCCEEEECT-------TSCHHHHHHHHHHHHHTSCSEEEECHH T ss_pred HHHHHHHHCCCCEEEE----ECCHHHHHHHHHHHHHCCCCEEEEEC-------CCCHHHHHHHHHHHHHCCCCEEEEECE T ss_conf 9999984489999999----89999999999999878997999979-------899999999998753124437886100 Q ss_pred C Q ss_conf 8 Q gi|254780901|r 159 G 159 (600) Q Consensus 159 G 159 (600) + T Consensus 114 ~ 114 (191) T 2p6n_A 114 A 114 (191) T ss_dssp H T ss_pred E T ss_conf 3 No 225 >1ogy_A Periplasmic nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 Probab=35.58 E-value=17 Score=14.34 Aligned_cols=114 Identities=11% Similarity=0.012 Sum_probs=57.0 Q ss_pred HHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHH-CCCC-EEEE--E---C----CCCCCCCCCCHHHHHH Q ss_conf 79999999999977--997999940788615289999999997-6994-7998--0---7----8743366889789887 Q gi|254780901|r 78 CDKAARRIVQAIYN--SEKIMIFGDYDVDGAASVALMMRFLSH-CSVN-ANMY--I---P----DRIVDGYGPNPSLMEK 144 (600) Q Consensus 78 m~~A~~ri~~ai~~--~ekI~I~gDyD~DGitstail~~~L~~-~g~~-v~~~--I---P----~R~~eGYGl~~~~i~~ 144 (600) ++.++++|.+.+++ .++|.+||--. -+........+++.. +|.. +..+ + | ....-|.|......++ T Consensus 97 l~~iA~kl~~i~~~~G~~si~~~~~g~-~~~~~~~~~~~~~~~~~gt~~~~~~~~~c~~~~~~~~~~~~G~~~~~~~~~D 175 (802) T 1ogy_A 97 FDVMAAQAKLVLKEKAPEAVGMFGSGQ-WTIWEGYAASKLMRAGFRSNNLDPNARHCMASAATAFMRTFGMDEPMGCYDD 175 (802) T ss_dssp HHHHHHHHHHHHHHTCGGGEEEEECTT-SCHHHHHHHHHHHHTTSCCCCEEETHHHHTHHHHHHHHHHHSSCSCSSCTTH T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCC-CHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHH T ss_conf 999999999999975988799990786-2068899999999983799840788651179999999986278998888878 Q ss_pred HHHCCCCEEEEECCCCCCHHH---------HHHHHHCCCCEEEECCCCCCCCCCCCEEEECC Q ss_conf 420268689996488762345---------55554179827996154476555672565237 Q gi|254780901|r 145 FINEGAQLIITVDCGSTSYDA---------LQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 (600) Q Consensus 145 ~~~~g~~LiItvD~Gi~~~e~---------i~~a~~~GidvIVtDHH~~~~~~p~a~aivNP 197 (600) +.. +++||.. |.+-.+. +..+++.|+.+||+|-... ..-..|+--|-+ T Consensus 176 ~~~--a~~ii~~--G~N~~~~~~~~~~~~~~~~~~~~g~k~vvidPr~s-~ta~~AD~wi~i 232 (802) T 1ogy_A 176 FEA--ADAFVLW--GSNMAEMHPILWSRLTDRRLSHEHVRVAVLSTFTH-RSSDLSDTPIIF 232 (802) T ss_dssp HHH--CSEEEEE--SCCHHHHSHHHHHHHHHHHHHSTTCEEEEEESSBC-GGGGSCSEEEEC T ss_pred HHH--CCEEEEE--ECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHCCCC T ss_conf 962--8678997--02653237427777888887642442123555565-055666530676 No 226 >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Probab=35.35 E-value=17 Score=14.31 Aligned_cols=51 Identities=8% Similarity=0.087 Sum_probs=31.5 Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEEEEECCCCCCHHHHHHH Q ss_conf 50262057858122222278998842010799886379837999864898618888885 Q gi|254780901|r 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSF 427 (600) Q Consensus 369 ~~ivv~~~~wh~GViGIVAsrL~e~y~kP~iv~s~~~dg~~kGS~RSi~g~~l~~~l~~ 427 (600) .++++.-|- .+.-.|++-.+.-....+-++++... +|. .++.-+|.++|++ T Consensus 200 Div~~~~pl-t~~T~~li~~~~l~~mk~~a~lIN~s-----RG~--vvde~aL~~aL~~ 250 (331) T 1xdw_A 200 DIITIHAPY-IKENGAVVTRDFLKKMKDGAILVNCA-----RGQ--LVDTEAVIEAVES 250 (331) T ss_dssp SEEEECCCC-CTTTCCSBCHHHHHTSCTTEEEEECS-----CGG--GBCHHHHHHHHHH T ss_pred CCCCCCCCC-CCCCCCCCCHHHHHHCCCCCEEEEEC-----CCC--CCCHHHHHHHHHC T ss_conf 555434688-74566746899996089998899916-----643--2689999999974 No 227 >1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A* Probab=35.33 E-value=17 Score=14.31 Aligned_cols=84 Identities=13% Similarity=0.214 Sum_probs=56.5 Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC---CCCCCH--------HHHHHHHHCCC Q ss_conf 9999999977997999940788615289999999997699479980787433---668897--------89887420268 Q gi|254780901|r 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD---GYGPNP--------SLMEKFINEGA 150 (600) Q Consensus 82 ~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~e---GYGl~~--------~~i~~~~~~g~ 150 (600) +.+|.+.+. .+.-+-+- + +.=+.+.......+-.+.+|++-.| -+|++. ..++++++.|+ T Consensus 58 v~~l~~~~~--~~lNlE~~------~-~~e~~~ia~~~kP~qvtLVPe~r~elTTegGld~~~~~~~L~~~i~~lk~~gi 128 (243) T 1m5w_A 58 VRILRQTLD--TRMNLEMA------V-TEEMLAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGI 128 (243) T ss_dssp HHHHHHHCS--SEEEEEEC------S-SHHHHHHHHHHCCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHH--HHHHCCCC------C-CHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCC T ss_conf 999988655--55403677------6-48899999976998699815887755877756322658899999999987598 Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEE Q ss_conf 689996488762345555541798279 Q gi|254780901|r 151 QLIITVDCGSTSYDALQYATNQGIDVI 177 (600) Q Consensus 151 ~LiItvD~Gi~~~e~i~~a~~~GidvI 177 (600) ..-+++|- +.++++.|++.|.|.| T Consensus 129 rvSLFiDP---d~~qi~~a~~~Gad~I 152 (243) T 1m5w_A 129 QVSLFIDA---DEEQIKAAAEVGAPFI 152 (243) T ss_dssp EEEEEECS---CHHHHHHHHHTTCSEE T ss_pred CEEEEECC---CHHHHHHHHHCCCCEE T ss_conf 16998368---8899999987199958 No 228 >1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixation regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A* Probab=35.04 E-value=17 Score=14.27 Aligned_cols=15 Identities=7% Similarity=0.036 Sum_probs=6.2 Q ss_pred HHHHHHHHHCCCCEE Q ss_conf 999999997699479 Q gi|254780901|r 110 ALMMRFLSHCSVNAN 124 (600) Q Consensus 110 ail~~~L~~~g~~v~ 124 (600) ..+...|+..|..+. T Consensus 17 ~~l~~~L~~~g~~v~ 31 (126) T 1dbw_A 17 KSLAFMLTMNGFAVK 31 (126) T ss_dssp HHHHHHHHHTTCEEE T ss_pred HHHHHHHHHCCCEEE T ss_conf 999999998799999 No 229 >1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural genomics, JCSG, protein structure initiative, PSI; HET: NAP; 1.78A {Thermotoga maritima MSB8} SCOP: e.22.1.2 Probab=35.03 E-value=17 Score=14.27 Aligned_cols=61 Identities=13% Similarity=0.081 Sum_probs=26.9 Q ss_pred CCEEEEECCCCCHHHH---HHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHH----HHHHHCCCCEEEEECCC Q ss_conf 9799994078861528---9999999997699479980787433668897898----87420268689996488 Q gi|254780901|r 93 EKIMIFGDYDVDGAAS---VALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLM----EKFINEGAQLIITVDCG 159 (600) Q Consensus 93 ekI~I~gDyD~DGits---tail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i----~~~~~~g~~LiItvD~G 159 (600) +|++|..|-. .+.. ..-+.+.|+..|.++..|-- +. --.+.+.+ +.+.+.+++.||.+-=| T Consensus 44 kkvliVt~~~--~~~~~g~~~~v~~~L~~~gi~~~~f~~--v~--~~pt~~~v~~~~~~~~~~~~D~IIavGGG 111 (407) T 1vlj_A 44 RKVLFLYGGG--SIKKNGVYDQVVDSLKKHGIEWVEVSG--VK--PNPVLSKVHEAVEVAKKEKVEAVLGVGGG 111 (407) T ss_dssp CEEEEEECSS--HHHHSSHHHHHHHHHHHTTCEEEEECC--CC--SSCBHHHHHHHHHHHHHTTCSEEEEEESH T ss_pred CEEEEEECCC--HHHHCCHHHHHHHHHHHCCCEEEEECC--CC--CCCCHHHHHHHHHHHHHCCCCEEEECCCC T ss_conf 8589998875--788752999999999865993999857--07--99999999999999974599789954996 No 230 >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 Probab=35.00 E-value=17 Score=14.27 Aligned_cols=92 Identities=15% Similarity=0.209 Sum_probs=44.5 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCC-CH-----HHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCHHHHHHHHH Q ss_conf 14879999999999977997999940788-61-----52899999999976-9947998078743366889789887420 Q gi|254780901|r 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDV-DG-----AASVALMMRFLSHC-SVNANMYIPDRIVDGYGPNPSLMEKFIN 147 (600) Q Consensus 75 l~dm~~A~~ri~~ai~~~ekI~I~gDyD~-DG-----itstail~~~L~~~-g~~v~~~IP~R~~eGYGl~~~~i~~~~~ 147 (600) +.++++.++++.++ +-. |=++|+ || +|-..-..+.++.. ...+..|+=- .+ ....++++.+ T Consensus 16 ~~~l~~~i~~l~~~---g~d---~iHiDImDG~Fvpn~~~~~~~i~~i~~~t~~~idvHLMv--~~----P~~~i~~~~~ 83 (230) T 1tqj_A 16 FSRLGEEIKAVDEA---GAD---WIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMI--VE----PEKYVEDFAK 83 (230) T ss_dssp GGGHHHHHHHHHHT---TCS---EEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEES--SS----GGGTHHHHHH T ss_pred HHHHHHHHHHHHHC---CCC---EEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEE--EC----HHHHHHHHHH T ss_conf 89999999999976---999---899968879767754659999999875268862578987--47----8999999986 Q ss_pred CCCCEEEEECCCCCC----HHHHHHHHHCCCCEEEE Q ss_conf 268689996488762----34555554179827996 Q gi|254780901|r 148 EGAQLIITVDCGSTS----YDALQYATNQGIDVIVI 179 (600) Q Consensus 148 ~g~~LiItvD~Gi~~----~e~i~~a~~~GidvIVt 179 (600) .|++.++. -....+ .+-+.++++.|+.+-+. T Consensus 84 ~g~~~i~~-H~E~~~~~~~~~~i~~ik~~g~k~Gla 118 (230) T 1tqj_A 84 AGADIISV-HVEHNASPHLHRTLCQIRELGKKAGAV 118 (230) T ss_dssp HTCSEEEE-ECSTTTCTTHHHHHHHHHHTTCEEEEE T ss_pred CCCCEEEE-ECCCCCCHHHHHHHHHHHHCCCCEEEE T ss_conf 48978998-245455646899999999869918999 No 231 >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} Probab=35.00 E-value=17 Score=14.27 Aligned_cols=77 Identities=14% Similarity=0.206 Sum_probs=43.2 Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHH-HHHHHHC Q ss_conf 799994078861528999999999769947998078743366889789887420268689996488762345-5555417 Q gi|254780901|r 94 KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDA-LQYATNQ 172 (600) Q Consensus 94 kI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~-i~~a~~~ 172 (600) ||.|.| + |-.+..+ .+.|+.-+.++....- |..+.--. ...++++.+..++++|-| .+..++.+ +..+-+. T Consensus 2 kVgIIG---~-G~iG~~v-~~~l~~~~~el~~v~d-~~~~~~~~-~~~~de~l~~~~DvVie~-a~~~a~~e~a~~~L~~ 73 (236) T 2dc1_A 2 LVGLIG---Y-GAIGKFL-AEWLERNGFEIAAILD-VRGEHEKM-VRGIDEFLQREMDVAVEA-ASQQAVKDYAEKILKA 73 (236) T ss_dssp EEEEEC---C-SHHHHHH-HHHHHHTTCEEEEEEC-SSCCCTTE-ESSHHHHTTSCCSEEEEC-SCHHHHHHHHHHHHHT T ss_pred EEEEEC---C-CHHHHHH-HHHHHHCCCEEEEEEE-CCCCCCCC-CCCHHHHHCCCCCEEEEE-CCCCCCHHHHHHHHHC T ss_conf 799995---8-8899999-9999719988999996-78502244-489999943888789990-6974047999999973 Q ss_pred CCCEEE Q ss_conf 982799 Q gi|254780901|r 173 GIDVIV 178 (600) Q Consensus 173 GidvIV 178 (600) |++|++ T Consensus 74 G~~vvv 79 (236) T 2dc1_A 74 GIDLIV 79 (236) T ss_dssp TCEEEE T ss_pred CCCEEE T ss_conf 997999 No 232 >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Probab=34.92 E-value=17 Score=14.36 Aligned_cols=49 Identities=22% Similarity=0.269 Sum_probs=32.1 Q ss_pred CHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCC Q ss_conf 978988742026868999648876234555554179827996154476555 Q gi|254780901|r 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 (600) Q Consensus 138 ~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~~~~~~ 188 (600) .++.-+....+.++++| +-.|.+-..+...|+++|.+|+|.|.+ +.+.. T Consensus 4 ~p~~~~~~p~ekyDVvI-IGaGpAGlsAA~~l~r~g~~v~lie~~-~GG~~ 52 (323) T 3f8d_A 4 LPRTTSVKPGEKFDVII-VGLGPAAYGAALYSARYMLKTLVIGET-PGGQL 52 (323) T ss_dssp ------CCTTCEEEEEE-ECCSHHHHHHHHHHHHTTCCEEEEESS-TTGGG T ss_pred CCCCCCCCCCCEEEEEE-ECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEE T ss_conf 78787799898245999-898899999999999789989999807-99657 No 233 >1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC structure funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A Probab=34.92 E-value=17 Score=14.26 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=17.6 Q ss_pred HHHHHCCCCEEEECC-CCCCCCCCCCEEEECCC Q ss_conf 555417982799615-44765556725652378 Q gi|254780901|r 167 QYATNQGIDVIVIDH-HQVKSEEIPAYALVNPN 198 (600) Q Consensus 167 ~~a~~~GidvIVtDH-H~~~~~~p~a~aivNP~ 198 (600) ..+++.+.|+++.=| |.|--+......+|||= T Consensus 131 ~~~~~~~~div~~GHTH~~~~~~~~~~~~iNPG 163 (190) T 1s3l_A 131 MAIKSGLYDVVIYGHTHERVFEEVDDVLVINPG 163 (190) T ss_dssp HHHHHSCCSEEEEECSSCCEEEEETTEEEEECC T ss_pred HHHHCCCCCEEEECCCCCCCEEEECCEEEEECC T ss_conf 886427976999999576327999999999799 No 234 >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99.5) (CM) and prephenate dehydrogenase...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 Probab=34.89 E-value=17 Score=14.26 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=12.1 Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 9799994078861528999999999769947998 Q gi|254780901|r 93 EKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126 (600) Q Consensus 93 ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~ 126 (600) +||+|+| -=|..+.+ +.++|+..|.+|..+ T Consensus 22 ~ki~iIG---G~G~mG~s-la~~l~~~G~~V~~~ 51 (298) T 2pv7_A 22 HKIVIVG---GYGKLGGL-FARYLRASGYPISIL 51 (298) T ss_dssp CCEEEET---TTSHHHHH-HHHHHHTTTCCEEEE T ss_pred CEEEEEE---CCCHHHHH-HHHHHHHCCCEEEEE T ss_conf 8389992---69867899-999999689959997 No 235 >2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A Probab=34.51 E-value=17 Score=14.21 Aligned_cols=16 Identities=0% Similarity=-0.051 Sum_probs=6.3 Q ss_pred HHHHHHHHHHCCCCEE Q ss_conf 9999999997699479 Q gi|254780901|r 109 VALMMRFLSHCSVNAN 124 (600) Q Consensus 109 tail~~~L~~~g~~v~ 124 (600) ...+...|+..|.+|. T Consensus 13 ~~~l~~~L~~~G~~v~ 28 (121) T 2pl1_A 13 RHHLKVQIQDAGHQVD 28 (121) T ss_dssp HHHHHHHHHHTTCEEE T ss_pred HHHHHHHHHHCCCEEE T ss_conf 9999999998799999 No 236 >3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis} Probab=34.47 E-value=17 Score=14.21 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=19.1 Q ss_pred CHHHHHHHHHCCCCEEEECCCCCCCCC Q ss_conf 234555554179827996154476555 Q gi|254780901|r 162 SYDALQYATNQGIDVIVIDHHQVKSEE 188 (600) Q Consensus 162 ~~e~i~~a~~~GidvIVtDHH~~~~~~ 188 (600) ..++.+.|.+.|.+.|=+|=+...+.. T Consensus 49 Tl~af~~A~~~G~~~iE~DV~~TkDg~ 75 (292) T 3mz2_A 49 SMETFENTLSYTPATFEIDPRLTKDSV 75 (292) T ss_dssp CHHHHHHHHHHCCCEEEECEEECTTCC T ss_pred HHHHHHHHHHCCCCEEEEEEEECCCCC T ss_conf 799999999859899998779925998 No 237 >3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A* Probab=34.21 E-value=18 Score=14.18 Aligned_cols=81 Identities=19% Similarity=0.388 Sum_probs=51.3 Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC-CCH--------HHHHHHHHCCCCEEEEECCCCCC Q ss_conf 997999940788615289999999997699479980787433668-897--------89887420268689996488762 Q gi|254780901|r 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYG-PNP--------SLMEKFINEGAQLIITVDCGSTS 162 (600) Q Consensus 92 ~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYG-l~~--------~~i~~~~~~g~~LiItvD~Gi~~ 162 (600) +.+|.|| |- |+-+-+++.+..+.+-..-.+|+-|.-.-.|| -+. +.++.+.+.++++|| +=|-+.+ T Consensus 5 ~~pIgvf-DS---GvGGLsvl~~l~~~lP~~~~iY~~D~~~~PYG~ks~~ei~~~~~~~~~~l~~~~~~~iV-iACNTas 79 (269) T 3ist_A 5 KQAIGFI-DS---GVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIKMLV-IACNTAT 79 (269) T ss_dssp CCCEEEE-ES---SSTTHHHHHHHHHHCTTCCEEEEECGGGCCCTTSCHHHHHHHHHHHHHHHHHTTCSEEE-ECCHHHH T ss_pred CCCEEEE-EC---CCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE-EECCCHH T ss_conf 7968999-58---97579999999997899998999448899989999999999999999999866999899-9468557 Q ss_pred HHHHHHHHHC-CCCEE Q ss_conf 3455555417-98279 Q gi|254780901|r 163 YDALQYATNQ-GIDVI 177 (600) Q Consensus 163 ~e~i~~a~~~-GidvI 177 (600) .-.++.+++. .+.+| T Consensus 80 ~~al~~lr~~~~ipii 95 (269) T 3ist_A 80 AAALYDIREKLDIPVI 95 (269) T ss_dssp HHHHHHHHHHCSSCEE T ss_pred HHHHHHHHHHCCCCEE T ss_conf 9999999975799764 No 238 >3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, cytoplasm, phosphoprotein, protein binding; 2.80A {Homo sapiens} Probab=34.17 E-value=18 Score=14.17 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=29.9 Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHHCEEEEEEE Q ss_conf 34750262057858122222278998842010799886 Q gi|254780901|r 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISF 403 (600) Q Consensus 366 ~~~~~ivv~~~~wh~GViGIVAsrL~e~y~kP~iv~s~ 403 (600) +.+.++|+.+++ +-|=-|++|+|....++..|.|+-. T Consensus 131 ~~P~VlVlcG~G-nNGgDGla~AR~L~~~G~~V~v~l~ 167 (306) T 3d3j_A 131 QRPTVALLCGPH-VKGAQGISCGRHLANHDVQVILFLP 167 (306) T ss_dssp CCCEEEEEECSS-HHHHHHHHHHHHHHHTTCEEEEECC T ss_pred CCCEEEEEECCC-CCCHHHHHHHHHHHHCCCEEEEEEC T ss_conf 898699998999-9809999999999968996999957 No 239 >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A Probab=34.03 E-value=18 Score=14.16 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=17.6 Q ss_pred HHHHHHHHCCCCEEEEE-C-CCCCCHHHHHHHHHCCCCEEE Q ss_conf 89887420268689996-4-887623455555417982799 Q gi|254780901|r 140 SLMEKFINEGAQLIITV-D-CGSTSYDALQYATNQGIDVIV 178 (600) Q Consensus 140 ~~i~~~~~~g~~LiItv-D-~Gi~~~e~i~~a~~~GidvIV 178 (600) ..++++.+.|++.|+.- . +.....+.+..+++.|+.+-| T Consensus 78 ~~i~~~~~~g~~~i~~H~E~~~~~~~~~i~~i~~~g~k~Gi 118 (228) T 1h1y_A 78 DYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGV 118 (228) T ss_dssp GGHHHHHHHTCSEEEEEGGGCTTTHHHHHHHHHHTTCEEEE T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEE T ss_conf 54999985699779960500235899999999974973115 No 240 >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Probab=33.70 E-value=18 Score=14.12 Aligned_cols=80 Identities=9% Similarity=0.185 Sum_probs=55.1 Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHC----CCCEEEEECCCCC----CHHH Q ss_conf 7999940788615289999999997699479980787433668897898874202----6868999648876----2345 Q gi|254780901|r 94 KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE----GAQLIITVDCGST----SYDA 165 (600) Q Consensus 94 kI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~----g~~LiItvD~Gi~----~~e~ 165 (600) .|+++|=.-+-=+|++|=|..+++.-|.+|...--+-+ -..+++.+... ++.+. ....+.. +.++ T Consensus 103 Vi~lvG~~GvGKTTT~aKLA~~~~~~g~kv~Lva~Dt~------R~aAveQLk~~a~~~~vp~~-~~~~~~dp~~i~~~~ 175 (504) T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTF------RAGAFDQLKQNATKARIPFY-GSYTEMDPVIIASEG 175 (504) T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS------SSHHHHHHHHHHHHHTCCEE-ECCCCSCHHHHHHHH T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC------CHHHHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHH T ss_conf 99996687888655089999999860020200001236------77799999998730477655-754434768899999 Q ss_pred HHHHHHCCCCEEEEC Q ss_conf 555541798279961 Q gi|254780901|r 166 LQYATNQGIDVIVID 180 (600) Q Consensus 166 i~~a~~~GidvIVtD 180 (600) ++++++.+.|||++| T Consensus 176 ~~~ak~~~~DvIiID 190 (504) T 2j37_W 176 VEKFKNENFEIIIVD 190 (504) T ss_dssp HHHHHHTTCCEEEEE T ss_pred HHHHHHCCCCEEEEC T ss_conf 999986699889955 No 241 >2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens} Probab=33.64 E-value=18 Score=14.11 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=16.1 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH Q ss_conf 1487999999999997799799994078861528 Q gi|254780901|r 75 LTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAAS 108 (600) Q Consensus 75 l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGits 108 (600) ..-++++++.|.++++++++|+|+. ..|++- T Consensus 64 ~~~~~~~~~~i~~~~~~~~~VlVHC---~~G~~R 94 (145) T 2nt2_A 64 LAYWNDTYKFISKAKKHGSKCLVHS---KMGVSR 94 (145) T ss_dssp GGGHHHHHHHHHHHHHTTCEEEEEC---SSSSSH T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEE---CCCCCC T ss_conf 7999999999998633575399994---677775 No 242 >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose phosphate pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 Probab=33.59 E-value=18 Score=14.11 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=44.5 Q ss_pred CCHHHHHHHHHHHHHCCCCEEE--EECCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCE Q ss_conf 4879999999999977997999--9407886152899999999976-994799807874336688978988742026868 Q gi|254780901|r 76 TDCDKAARRIVQAIYNSEKIMI--FGDYDVDGAASVALMMRFLSHC-SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQL 152 (600) Q Consensus 76 ~dm~~A~~ri~~ai~~~ekI~I--~gDyD~DGitstail~~~L~~~-g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~L 152 (600) .++.+.++++.++-- ..|.| .=-.=|.-+|-..-+.+.++.. ...+..|+=- .+ ....++++.+.|++. T Consensus 23 ~~l~~~l~~l~~~g~--d~iHiDimDg~Fvpn~~~~~~~i~~i~~~t~~~idvHLMv--~~----P~~~i~~~~~~g~d~ 94 (230) T 1rpx_A 23 SKLGEQVKAIEQAGC--DWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMI--VE----PDQRVPDFIKAGADI 94 (230) T ss_dssp GGHHHHHHHHHHTTC--CCEEEEEEBSSSSSCBCCCHHHHHHHGGGCCSCEEEEEES--SS----HHHHHHHHHHTTCSE T ss_pred HHHHHHHHHHHHCCC--CEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEE--EC----HHHHHHHHHHHCCCE T ss_conf 999999999997599--9899968879827766638789999874179875269999--65----787699998718953 Q ss_pred EEE-ECCCCC-C-HHHHHHHHHCCCCEEE Q ss_conf 999-648876-2-3455555417982799 Q gi|254780901|r 153 IIT-VDCGST-S-YDALQYATNQGIDVIV 178 (600) Q Consensus 153 iIt-vD~Gi~-~-~e~i~~a~~~GidvIV 178 (600) ++. +.+-.+ . .+-+.++++.|+.+-+ T Consensus 95 i~~H~E~~~~~~~~~~i~~ik~~g~k~Gl 123 (230) T 1rpx_A 95 VSVHCEQSSTIHLHRTINQIKSLGAKAGV 123 (230) T ss_dssp EEEECSTTTCSCHHHHHHHHHHTTSEEEE T ss_pred EEEECCCCCCCCHHHHHHHHHHCCCEEEE T ss_conf 67513334422699999999987986999 No 243 >3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} Probab=33.43 E-value=18 Score=14.09 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=23.0 Q ss_pred HHHHHHCCCCEEEEE--CCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 999997699479980--78743366889789887420268689996488762 Q gi|254780901|r 113 MRFLSHCSVNANMYI--PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162 (600) Q Consensus 113 ~~~L~~~g~~v~~~I--P~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~ 162 (600) .+.|+.||.+...+| .||.-| --.+.++.+.+.|++.+|++ .|-++ T Consensus 27 ~~~L~~~gI~~e~~V~SAHR~p~---~l~~~~~~~~~~g~~ViIa~-AG~aa 74 (174) T 3lp6_A 27 AAALAEFDIPAEVRVVSAHRTPE---AMFSYARGAAARGLEVIIAG-AGGAA 74 (174) T ss_dssp HHHHHHTTCCEEEEECCTTTCHH---HHHHHHHHHHHHTCCEEEEE-EESSC T ss_pred HHHHHHCCCCEEEEEECCCCCHH---HHHHHHHHHHHCCCEEEEEC-CCCCC T ss_conf 99999839963687864745868---99999999985698699971-56753 No 244 >2rjo_A Twin-arginine translocation pathway signal protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: GAL; 2.05A {Burkholderia phytofirmans psjn} Probab=33.24 E-value=18 Score=14.07 Aligned_cols=44 Identities=16% Similarity=0.208 Sum_probs=27.7 Q ss_pred HHHHHHHCCCC-EEEEEC-CCCC-CHHHHHHHHHCCCCEEEECCCCC Q ss_conf 98874202686-899964-8876-23455555417982799615447 Q gi|254780901|r 141 LMEKFINEGAQ-LIITVD-CGST-SYDALQYATNQGIDVIVIDHHQV 184 (600) Q Consensus 141 ~i~~~~~~g~~-LiItvD-~Gi~-~~e~i~~a~~~GidvIVtDHH~~ 184 (600) .++.++..+++ +||++. .... ....++.+++.||.||..|.=.+ T Consensus 53 ~i~~li~~~~d~iIi~~~p~d~~~~~~~i~~~~~~gIpvV~id~~~~ 99 (332) T 2rjo_A 53 DIRALLQKTGGNLVLNVDPNDSADARVIVEACSKAGAYVTTIWNKPK 99 (332) T ss_dssp HHHHHHHHTTTCEEEEECCSSHHHHHHHHHHHHHHTCEEEEESCCCT T ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCC T ss_conf 99999965999899983676457678999999985995899605566 No 245 >1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A Probab=33.11 E-value=18 Score=14.05 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=25.2 Q ss_pred EEEEECCCCCCHHHH-HHHHHCCCCEEEECCCCCCC Q ss_conf 899964887623455-55541798279961544765 Q gi|254780901|r 152 LIITVDCGSTSYDAL-QYATNQGIDVIVIDHHQVKS 186 (600) Q Consensus 152 LiItvD~Gi~~~e~i-~~a~~~GidvIVtDHH~~~~ 186 (600) .|+.+|+|.+...-| .+++++|.++.|+.+-.+.+ T Consensus 2 mI~iiD~g~~ft~ni~~~l~~lG~~~~i~p~~~~~~ 37 (189) T 1wl8_A 2 MIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTTPLE 37 (189) T ss_dssp EEEEEECSCTTHHHHHHHHHHTTCEEEEEETTCCHH T ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCHH T ss_conf 899997998489999999997899289996999889 No 246 >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Probab=33.09 E-value=18 Score=14.05 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=14.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9989999999999999999999 Q gi|254780901|r 336 LDVLNQNRRLMESAMLEQAEAK 357 (600) Q Consensus 336 L~~lN~~Rk~~e~~i~~~a~~~ 357 (600) |+.+..+|+-.-.++.+.+... T Consensus 356 L~~Ye~eRrp~a~~~~~~s~~~ 377 (549) T 2r0c_A 356 LATYEEERRPVAITSLEEANVN 377 (549) T ss_dssp THHHHHHHHHHHHHHHHC---- T ss_pred HHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999899999999999999 No 247 >1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Probab=33.02 E-value=18 Score=14.04 Aligned_cols=99 Identities=16% Similarity=0.313 Sum_probs=59.5 Q ss_pred HHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEE-EECCCCCCCCCCC-HHHHHHHHHC-C Q ss_conf 56148799999999999779979999407886152899999999976994799-8078743366889-7898874202-6 Q gi|254780901|r 73 LILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANM-YIPDRIVDGYGPN-PSLMEKFINE-G 149 (600) Q Consensus 73 ~~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~-~IP~R~~eGYGl~-~~~i~~~~~~-g 149 (600) ..+..++.-...+..+.+++.+.+|+.+ |+||-.=++++.+-++. +.++.. ..| |||-. .+.+++++-- | T Consensus 34 ~kI~~~~~ilp~Le~~~~~~rPLlIIAe-di~~eaL~~Lv~N~~~g-~l~v~aVkaP-----~fG~~r~~~L~DlAi~tG 106 (145) T 1srv_A 34 KKVSNVRELLPILEQVAQTGKPLLIIAE-DVEGEALATLVVNKLRG-TLSVAAVKAP-----GFGDRRKEMLKDIAAVTG 106 (145) T ss_dssp SEECCHHHHHHHHHHHHTTTCCEEEEES-EECHHHHHHHHHHHHTT-SCCEEEEECC-----SSHHHHHHHHHHHHHHHT T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEC-CCCHHHHHHHHHHHHHC-CCEEEEEECC-----CCCHHHHHHCCHHHHHCC T ss_conf 6523599999999999971996799957-66789999999998608-8179999399-----986555554425353139 Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC--CEEEECC Q ss_conf 8689996488762345555541798--2799615 Q gi|254780901|r 150 AQLIITVDCGSTSYDALQYATNQGI--DVIVIDH 181 (600) Q Consensus 150 ~~LiItvD~Gi~~~e~i~~a~~~Gi--dvIVtDH 181 (600) . -+|+-|.|.. .+.+. ...+|- .|+|+-. T Consensus 107 a-~vi~~~~g~~-l~~~~-~~~LG~a~kv~vtk~ 137 (145) T 1srv_A 107 G-TVISEELGFK-LENAT-LSMLGRAERVRITKD 137 (145) T ss_dssp C-CEECTTTTCC-GGGCC-GGGCEEEEEEEECSS T ss_pred C-EEECCCCCCC-CCCCC-HHHCCCCCEEEEECC T ss_conf 8-8862546745-35499-989885238999389 No 248 >1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* Probab=33.00 E-value=18 Score=14.04 Aligned_cols=79 Identities=9% Similarity=0.023 Sum_probs=36.9 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCC---------CCCCCCCC--HHHHHHHHH Q ss_conf 9999999999977997999940788615289999999997699479980787---------43366889--789887420 Q gi|254780901|r 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR---------IVDGYGPN--PSLMEKFIN 147 (600) Q Consensus 79 ~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R---------~~eGYGl~--~~~i~~~~~ 147 (600) ...++.+.+.+.+.++.+|+.-..+.+. ..-+.++...++..+..-...+ +..++|.. ....+.+ T Consensus 192 ~~~i~~~~~~L~~akrPvIv~G~~~~~~--~~~~~~~~~~~~~pv~~t~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~-- 267 (590) T 1v5e_A 192 AQDIDAAVELLNNSKRPVIYAGIGTMGH--GPAVQELARKIKAPVITTGKNFETFEWDFEALTGSTYRVGWKPANETI-- 267 (590) T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGTTC--HHHHHHHHHHHTCCEEECTTCGGGSCTTCTTEEEESSSSSCHHHHHHH-- T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCC--HHHHHHHHHHCCCCCEECHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH-- T ss_conf 9999999999985799789996064323--699999986236860100112100013442346764445738999986-- Q ss_pred CCCCEEEEECCCCC Q ss_conf 26868999648876 Q gi|254780901|r 148 EGAQLIITVDCGST 161 (600) Q Consensus 148 ~g~~LiItvD~Gi~ 161 (600) ..++++|++.+-.. T Consensus 268 ~~~Dlvl~iG~~~~ 281 (590) T 1v5e_A 268 LEADTVLFAGSNFP 281 (590) T ss_dssp HHCSEEEEESCCCT T ss_pred HCCCEEEEECCCCC T ss_conf 32572899436777 No 249 >2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} Probab=32.94 E-value=18 Score=14.03 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=42.6 Q ss_pred EEEEEEECCCCCEEEEEEECCCCCCHHHHHHCCCCCEEEEEEEEEE-EEECCCCEEEE----EEEEEEECCCCCC Q ss_conf 4999998499877999997787870123553069987999999766-54578110589----9998011131126 Q gi|254780901|r 528 HLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCV-NYWRGSKRCQL----RVLDASPVEGHHF 597 (600) Q Consensus 528 Hlkl~l~~~~g~~i~aI~Fn~~~~~~~~~~~~~~g~~idii~~l~~-N~~~G~~s~QL----~I~Di~p~e~~~~ 597 (600) -..+.+.+..| .+....|+-... .+.....|..+.+. ...+ ..|+|+.++.+ .|+-+.|+|-+|- T Consensus 44 ~~~i~l~D~TG-~I~vt~W~~~~~---~~~~l~~Gdvv~i~-~~~vk~~~~g~~~l~~~~~s~IevidP~e~~~~ 113 (115) T 2k50_A 44 LANVIIADDTG-ELRAVFWTENIK---LLKKFREGDVIRIK-DVNIRGGFGGRKEAHLMPRSTVEVLDPLEHHHH 113 (115) T ss_dssp EEEEEEEETTE-EEEEEEETTGGG---GGGTCCTTSEEEEE-EEEECCCSSSSCEEEECTTCCEEEESSCCC--- T ss_pred EEEEEEECCCC-EEEEEEEHHHHH---HHCCCCCCCEEEEE-CCEECCCCCCEEEEEECCCCEEEEECCCCCCCC T ss_conf 99999984999-799999502213---44269999999997-009882359949999889817999677210225 No 250 >1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A Probab=32.85 E-value=18 Score=14.03 Aligned_cols=100 Identities=15% Similarity=0.235 Sum_probs=51.4 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEE-EEECCCCCCCCCCCHHHHHHHHHCCCCEEE-- Q ss_conf 79999999999977997999940788615289999999997699479-980787433668897898874202686899-- Q gi|254780901|r 78 CDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN-MYIPDRIVDGYGPNPSLMEKFINEGAQLII-- 154 (600) Q Consensus 78 m~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~-~~IP~R~~eGYGl~~~~i~~~~~~g~~LiI-- 154 (600) |.++..+..+... +.+|+|=-|++ +..=+.+.++.++..+. +-|...+-..|| .+.++++.+.+..++. T Consensus 1 ~~~~~~~~~~~~~-~s~iivAlD~~-----~~~~al~l~~~l~~~i~~iKig~~l~~~~G--~~~i~~l~~~~~~If~D~ 72 (245) T 1eix_A 1 MTLTASSSSRAVT-NSPVVVALDYH-----NRDDALAFVDKIDPRDCRLKVGKEMFTLFG--PQFVRELQQRGFDIFLDL 72 (245) T ss_dssp -----------CC-CCCEEEEECCS-----SHHHHHHHHTTSCTTTCEEEEEHHHHHHHH--HHHHHHHHHTTCCEEEEE T ss_pred CCCCCCCCCCCCC-CCCEEEEECCC-----CHHHHHHHHHHHCCCCCEEEECHHHHHHCC--HHHHHHHHHCCCCEEEEE T ss_conf 9745688776446-89989996289-----999999999981884619998889986479--999999984698199771 Q ss_pred -EECCCCCCHHHHHHHHHCCCCEEEECCCCCCC Q ss_conf -96488762345555541798279961544765 Q gi|254780901|r 155 -TVDCGSTSYDALQYATNQGIDVIVIDHHQVKS 186 (600) Q Consensus 155 -tvD~Gi~~~e~i~~a~~~GidvIVtDHH~~~~ 186 (600) +.|-|.+...++..+.+.|.| ++|-|=.... T Consensus 73 K~~DI~~tv~~~~~~~~~~~~d-~~tvh~~~g~ 104 (245) T 1eix_A 73 KFHDIPNTAAHAVAAAADLGVW-MVNVHASGGA 104 (245) T ss_dssp EECSCHHHHHHHHHHHHHHTCS-EEEEBGGGCH T ss_pred CCCCCHHHHHHHHHHHHHCCCC-EEEECCCCCH T ss_conf 0056317999999977743898-9999887777 No 251 >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP- binding, helicase, nucleotide-binding; 2.80A {Thermus thermophilus HB27} Probab=32.81 E-value=19 Score=14.02 Aligned_cols=68 Identities=12% Similarity=0.176 Sum_probs=48.4 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC----HHHHHHHHHCCCCEEEE Q ss_conf 99999999997799799994078861528999999999769947998078743366889----78988742026868999 Q gi|254780901|r 80 KAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPN----PSLMEKFINEGAQLIIT 155 (600) Q Consensus 80 ~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~----~~~i~~~~~~g~~LiIt 155 (600) .+..++... .+++++.|| |.-...+-.|+..|+..|..+.++-. +++ ..+++++.+....++|+ T Consensus 17 ~~l~~~l~~-~~~~k~iVF----~~t~~~~~~l~~~L~~~g~~~~~ihg-------~~~~~~R~~~~~~F~~~~~~vlv~ 84 (300) T 3i32_A 17 EVLSDLLYV-ASPDRAMVF----TRTKAETEEIAQGLLRLGHPAQALHG-------DMSQGERERVMGAFRQGEVRVLVA 84 (300) T ss_dssp HHHHHHHHH-HCCSSEEEE----CSSHHHHHHHHHHHHTTTCCEEEECS-------CCCTHHHHHHHHHHHHTSCCEEEE T ss_pred HHHHHHHHH-CCCCEEEEE----ECCHHHHHHHHHHHHHCCCCEEEEEC-------CCCHHHHHHHHHHHHHHCCEEEEC T ss_conf 999999985-798869999----89889999999999868997899969-------999999999999998633403211 Q ss_pred ECCC Q ss_conf 6488 Q gi|254780901|r 156 VDCG 159 (600) Q Consensus 156 vD~G 159 (600) .|.. T Consensus 85 t~~~ 88 (300) T 3i32_A 85 TDVA 88 (300) T ss_dssp CSTT T ss_pred CHHH T ss_conf 1165 No 252 >3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} Probab=32.80 E-value=19 Score=14.02 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=18.3 Q ss_pred CCHHHHHHHHHCCCCEEEECCCCCCCCC Q ss_conf 6234555554179827996154476555 Q gi|254780901|r 161 TSYDALQYATNQGIDVIVIDHHQVKSEE 188 (600) Q Consensus 161 ~~~e~i~~a~~~GidvIVtDHH~~~~~~ 188 (600) ++.++...|.+.|.|.|=+|=|.-.+.. T Consensus 22 NT~~a~~~a~~~G~~~iE~Dv~~T~Dg~ 49 (238) T 3no3_A 22 NSIRSLERASEIGAYGSEFDVHLTADNV 49 (238) T ss_dssp TSHHHHHHHHHTTCSEEEEEEEECTTSC T ss_pred CHHHHHHHHHHCCCCEEEEEEEEECCCC T ss_conf 0399999999849899998767814998 No 253 >3cf4_G Acetyl-COA decarbonylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductase; 2.00A {Methanosarcina barkeri} Probab=32.64 E-value=19 Score=14.00 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=46.0 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE------ECCCCCCCCCCCHHHHHHHH---- Q ss_conf 87999999999997799799994078861528999999999769947998------07874336688978988742---- Q gi|254780901|r 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY------IPDRIVDGYGPNPSLMEKFI---- 146 (600) Q Consensus 77 dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~------IP~R~~eGYGl~~~~i~~~~---- 146 (600) ..+++++. |++-++-+|+.+..+.---+.-.+.++.+.+++-+..- +|++-..-+|.....+-... T Consensus 23 ~~e~~~~l----i~~akrP~ii~G~g~~~~~~~~~l~~~~~~~~iPv~tt~~~kg~~~e~~p~~~~~~~g~~G~~~~~~~ 98 (170) T 3cf4_G 23 SPEMAAKI----ISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHMLGFYLTDPK 98 (170) T ss_dssp CHHHHHHH----HHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHHHHHTTCTT T ss_pred CHHHHHHH----HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH T ss_conf 89999999----99668989994665250669999999999859998987000576775583201567410123465313 Q ss_pred ------HCCCCEEEEECC Q ss_conf ------026868999648 Q gi|254780901|r 147 ------NEGAQLIITVDC 158 (600) Q Consensus 147 ------~~g~~LiItvD~ 158 (600) -+.+||||.+-+ T Consensus 99 ~~~~~~~~~aDlil~vG~ 116 (170) T 3cf4_G 99 WPGLDGNGNYDMIITIGF 116 (170) T ss_dssp CCCSSSSCCCSEEEEESC T ss_pred HHHHHHHCCCCEEEEECC T ss_conf 777753047788999577 No 254 >1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* Probab=32.61 E-value=19 Score=13.99 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=62.2 Q ss_pred HHHHHHHH----HHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC-------CCCC--CHHHHH Q ss_conf 99999999----99977--997999940788615289999999997699479980787433-------6688--978988 Q gi|254780901|r 79 DKAARRIV----QAIYN--SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD-------GYGP--NPSLME 143 (600) Q Consensus 79 ~~A~~ri~----~ai~~--~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~e-------GYGl--~~~~i~ 143 (600) ++|.+.|. +.+++ .++|..|+---.-+..+.+...+++..+|.....+ .++.-+ -+|- ...... T Consensus 164 DEAld~IA~kl~~~~~~yGp~~i~~~~~~~~~~~~~~~~~~rf~~~~G~~~~~~-~~~~c~~~~a~~~~~G~~~~~~~~~ 242 (1247) T 1q16_A 164 QEVNELIAASNVYTIKNYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSF-YDWYCDLPPASPQTWGEQTDVPESA 242 (1247) T ss_dssp HHHHHHHHHHHHHHHHHTCGGGEEEECCCGGGSHHHHHHHHHHHHHHTCEEECC-TTTTTCSCTHHHHHHSCSCCCCCGG T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHHHEECCCCCCCHH T ss_conf 999999999999999861988299984887420789999999999729983589-8741159999998844898889987 Q ss_pred HHHHCCCCEEEEECCCCCC-------HHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCCCCCCC Q ss_conf 7420268689996488762-------34555554179827996154476555672565237888864 Q gi|254780901|r 144 KFINEGAQLIITVDCGSTS-------YDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDL 203 (600) Q Consensus 144 ~~~~~g~~LiItvD~Gi~~-------~e~i~~a~~~GidvIVtDHH~~~~~~p~a~aivNP~~~~~~ 203 (600) ++ .++++||.. |++. ..-+..|+++|..|||+|-.-- ..--.|+--+-+ +++.+ T Consensus 243 D~--~na~~ii~w--GsN~~~t~~~~~~~~~ear~~GaKvVvVDPr~t-~tA~~AD~Wlpi-rPGTD 303 (1247) T 1q16_A 243 DW--YNSSYIIAW--GSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYA-EIAKLCDLWLAP-KQGTD 303 (1247) T ss_dssp GG--GGCSEEEEE--SCCHHHHSGGGHHHHHHHGGGTCEEEEECSSCC-HHHHHSSEEECC-CTTCH T ss_pred HH--HHCCEEEEE--CCCHHHHCHHHHHHHHHHHHCCCEEEEECCCCC-CHHHHHCEECCC-CCCCH T ss_conf 89--729799997--789678776899999999988995999899998-315874983077-89849 No 255 >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A Probab=32.42 E-value=19 Score=13.97 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=56.2 Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHC----CCCEEEEECCCCC----CHHH Q ss_conf 7999940788615289999999997699479980787433668897898874202----6868999648876----2345 Q gi|254780901|r 94 KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINE----GAQLIITVDCGST----SYDA 165 (600) Q Consensus 94 kI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~----g~~LiItvD~Gi~----~~e~ 165 (600) .|++.|=.-+-=.|+++-|..+++.-|.+|-..--+- .-+.+++++... |+..+ .+..|.. +.++ T Consensus 100 VIl~vG~~G~GKTTT~aKLA~~~~~~g~kv~lva~Dt------~R~aA~eQL~~~a~~~~vp~~-~~~~~~dp~~i~~~~ 172 (425) T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT------QRPAAREQLRLLGEKVGVPVL-EVMDGESPESIRRRV 172 (425) T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS------SCHHHHHHHHHHHHHHTCCEE-ECCTTCCHHHHHHHH T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC------CCCCHHHHHHHHHHHCCCCEE-CCCCCCCHHHHHHHH T ss_conf 8999667887610089999999986398368984355------675679999999987088212-246777767789999 Q ss_pred HHHHHHCCCCEEEECC Q ss_conf 5555417982799615 Q gi|254780901|r 166 LQYATNQGIDVIVIDH 181 (600) Q Consensus 166 i~~a~~~GidvIVtDH 181 (600) +++|+..+.|||++|- T Consensus 173 ~~~ak~~~~DviiIDT 188 (425) T 2ffh_A 173 EEKARLEARDLILVDT 188 (425) T ss_dssp HHHHHHTTCSEEEEEC T ss_pred HHHHHHCCCCEEEEEC T ss_conf 9999866998899966 No 256 >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 Probab=32.41 E-value=19 Score=13.97 Aligned_cols=98 Identities=17% Similarity=0.134 Sum_probs=48.0 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEE-EEC-CCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCHHHHHHHHHCCCC Q ss_conf 14879999999999977997999-940-7886152899999999976-99479980787433668897898874202686 Q gi|254780901|r 75 LTDCDKAARRIVQAIYNSEKIMI-FGD-YDVDGAASVALMMRFLSHC-SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQ 151 (600) Q Consensus 75 l~dm~~A~~ri~~ai~~~ekI~I-~gD-yD~DGitstail~~~L~~~-g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~ 151 (600) +.++++.++++.++- -..|-+ .-| .=|..+|-..-..+.++.. ...+..|+--. + ....++.+.+.|++ T Consensus 15 ~~~l~~~i~~l~~~g--~d~iHvDimDg~Fvpn~t~g~~~i~~i~~~t~~~~dvHLMv~--~----P~~~i~~~~~~g~d 86 (220) T 2fli_A 15 YANFASELARIEETD--AEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVV--D----PERYVEAFAQAGAD 86 (220) T ss_dssp GGGHHHHHHHHHHTT--CCEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESS--S----GGGGHHHHHHHTCS T ss_pred HHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECC--C----HHHHHHHHHHCCCC T ss_conf 899999999999759--999999670483687547499999988636897679998517--9----88889999865997 Q ss_pred EEEE-ECCCCCCHHHHHHHHHCCCCEEEEC Q ss_conf 8999-6488762345555541798279961 Q gi|254780901|r 152 LIIT-VDCGSTSYDALQYATNQGIDVIVID 180 (600) Q Consensus 152 LiIt-vD~Gi~~~e~i~~a~~~GidvIVtD 180 (600) .|+. ..+-....+-++++++.|+.+-+.= T Consensus 87 ~I~~H~E~~~~~~~~i~~i~~~g~~~Glal 116 (220) T 2fli_A 87 IMTIHTESTRHIHGALQKIKAAGMKAGVVI 116 (220) T ss_dssp EEEEEGGGCSCHHHHHHHHHHTTSEEEEEE T ss_pred EEEECHHHHCCHHHHHHHHHHCCCEEEEEE T ss_conf 899532332088999999987698699996 No 257 >3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1} Probab=32.36 E-value=19 Score=13.96 Aligned_cols=67 Identities=10% Similarity=-0.014 Sum_probs=42.0 Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCC Q ss_conf 9999976994799807874336688978988742026868999648876234555554179827996154 Q gi|254780901|r 113 MRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHH 182 (600) Q Consensus 113 ~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH 182 (600) .+.++..|.++..+..+... .-.....++.+...+++=+|.++.-.+ .+.++.+++.|+-|+..|-- T Consensus 31 ~~~a~~~g~~l~v~~~~~~d--~~~~~~~i~~l~~~~vdgiIi~~~~~~-~~~~~~l~~~~iPvV~i~~~ 97 (290) T 3clk_A 31 QEEAHKNGYNLIIVYSGSAD--PEEQKHALLTAIERPVMGILLLSIALT-DDNLQLLQSSDVPYCFLSMG 97 (290) T ss_dssp HHHHHTTTCEEEEEC------------CHHHHHHSSCCSEEEEESCC-----CHHHHHCC--CEEEESCC T ss_pred HHHHHHCCCEEEEEECCCCC--HHHHHHHHHHHHHCCCCEEEEEECCCC-HHHHHHHHHCCCCEECCCCC T ss_conf 99999859989999689999--999999999998669878999713345-59999998637863214666 No 258 >1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A Probab=32.35 E-value=19 Score=13.96 Aligned_cols=23 Identities=9% Similarity=0.018 Sum_probs=11.0 Q ss_pred HHHHHHHHH-HHHHCCCCEEEEEC Q ss_conf 528999999-99976994799807 Q gi|254780901|r 106 AASVALMMR-FLSHCSVNANMYIP 128 (600) Q Consensus 106 itstail~~-~L~~~g~~v~~~IP 128 (600) -|=|-+=.+ +.+++|+++.+.=+ T Consensus 56 STRTR~SFe~A~~~LGg~~i~~~~ 79 (335) T 1dxh_A 56 STRTRCAFEVAAYDQGANVTYIDP 79 (335) T ss_dssp CHHHHHHHHHHHHHTTCEEEEECT T ss_pred CCHHHHHHHHHHHHCCCCEEECCC T ss_conf 701799999999985990997885 No 259 >2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1 Probab=32.28 E-value=19 Score=13.95 Aligned_cols=71 Identities=14% Similarity=0.194 Sum_probs=37.2 Q ss_pred HCCCCHHHCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH---------HHHHHHHHCCCCEEEEECCC Q ss_conf 619667771899556148799999999999779979999407886152899---------99999997699479980787 Q gi|254780901|r 60 FLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVA---------LMMRFLSHCSVNANMYIPDR 130 (600) Q Consensus 60 fL~p~l~~l~~dP~~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitsta---------il~~~L~~~g~~v~~~IP~R 130 (600) |+.++-..| +|.....+++.++.|.+ ..+.+|.|.|..|..|-...- -+..+|...|.+ |+| T Consensus 33 ~F~~~s~~L--~~~~~~~L~~ia~~l~~--~~~~~i~I~GhtD~~g~~~~N~~LS~~RA~~V~~~L~~~Gi~-----~~r 103 (134) T 2aiz_P 33 YFGFDKYDI--TGEYVQILDAHAAYLNA--TPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVD-----AGK 103 (134) T ss_dssp ECCTTCCCC--CHHHHHHHHHHHHHHHH--STTCCEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTTCC-----GGG T ss_pred ECCCCCCCC--CHHHHHHHHHHHHHHHH--CCCCEEEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHCCCC-----CCE T ss_conf 806997005--99999999999999996--899389999861686872327347999999999999974985-----137 Q ss_pred CC-CCCCCCH Q ss_conf 43-3668897 Q gi|254780901|r 131 IV-DGYGPNP 139 (600) Q Consensus 131 ~~-eGYGl~~ 139 (600) +. .|||-+. T Consensus 104 I~~~g~G~~~ 113 (134) T 2aiz_P 104 LGTVSYGEEK 113 (134) T ss_dssp EEEEECTTTS T ss_pred EEEEEECCCC T ss_conf 9888805647 No 260 >1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, JCSG, protein structure initiative, PSI; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 Probab=32.20 E-value=19 Score=13.95 Aligned_cols=34 Identities=12% Similarity=0.098 Sum_probs=17.8 Q ss_pred CHHHHHHHHHH-HHHHCCCCEEEEECCCCCCCCCC Q ss_conf 61528999999-99976994799807874336688 Q gi|254780901|r 104 DGAASVALMMR-FLSHCSVNANMYIPDRIVDGYGP 137 (600) Q Consensus 104 DGitstail~~-~L~~~g~~v~~~IP~R~~eGYGl 137 (600) .--|=|-+=.+ +.+++|.++.+.=|.-..-+.|- T Consensus 67 epSTRTR~SFe~A~~~LGg~~i~~~~~~ss~~kgE 101 (325) T 1vlv_A 67 KRSTRTRLAFETAFAEEGGHPIFLSPNDIHLGAKE 101 (325) T ss_dssp SCCHHHHHHHHHHHHHTTCEEEEECTTTCCTTTSS T ss_pred CCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCC T ss_conf 89753789999999983985897466433567885 No 261 >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Probab=32.15 E-value=19 Score=13.94 Aligned_cols=68 Identities=12% Similarity=0.194 Sum_probs=45.2 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCH----HHHHHHHHCCCCEEEEE Q ss_conf 99999999977997999940788615289999999997699479980787433668897----89887420268689996 Q gi|254780901|r 81 AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP----SLMEKFINEGAQLIITV 156 (600) Q Consensus 81 A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~----~~i~~~~~~g~~LiItv 156 (600) ....+.+.. .++++.||. .-...+-.++..|+..|..+.++-.+ ++. .+++++.+...+.+|+. T Consensus 21 ~L~~ll~~~-~~~k~iIF~----~s~~~~~~l~~~L~~~g~~~~~ihg~-------~~~~~R~~~~~~F~~g~~~vlv~T 88 (212) T 3eaq_A 21 VLSDLLYVA-SPDRAMVFT----RTKAETEEIAQGLLRLGHPAQALHGD-------LSQGERERVLGAFRQGEVRVLVAT 88 (212) T ss_dssp HHHHHHHHH-CCSCEEEEC----SSHHHHHHHHHHHHHHTCCEEEECSS-------SCHHHHHHHHHHHHSSSCCEEEEC T ss_pred HHHHHHHHC-CCCEEEEEE----CCHHHHHHHHHHHHHCCCCEEEEECC-------CCHHHHHHHHHHHHCCCEEEEEEC T ss_conf 999999857-989799997----97899999999998689978998799-------999999999988634875478730 Q ss_pred CCCC Q ss_conf 4887 Q gi|254780901|r 157 DCGS 160 (600) Q Consensus 157 D~Gi 160 (600) |++. T Consensus 89 ~~~~ 92 (212) T 3eaq_A 89 DVAA 92 (212) T ss_dssp TTTT T ss_pred HHHH T ss_conf 1343 No 262 >3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum} Probab=32.13 E-value=19 Score=13.94 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=3.6 Q ss_pred CCEEEECCCC Q ss_conf 8279961544 Q gi|254780901|r 174 IDVIVIDHHQ 183 (600) Q Consensus 174 idvIVtDHH~ 183 (600) .|+|++|.+. T Consensus 51 ~dlii~D~~m 60 (140) T 3lua_A 51 ITLIIMDIAF 60 (140) T ss_dssp CSEEEECSCS T ss_pred CCEEEEECCC T ss_conf 8599986899 No 263 >3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} Probab=32.05 E-value=19 Score=13.93 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=17.1 Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEE Q ss_conf 86899964887623455555417982799 Q gi|254780901|r 150 AQLIITVDCGSTSYDALQYATNQGIDVIV 178 (600) Q Consensus 150 ~~LiItvD~Gi~~~e~i~~a~~~GidvIV 178 (600) -.+++.|..|..+..+...++++|.+++. T Consensus 57 ~~iv~~C~~G~rS~~aa~~L~~~G~~~~~ 85 (100) T 3foj_A 57 ETYYIICKAGGRSAQVVQYLEQNGVNAVN 85 (100) T ss_dssp SEEEEECSSSHHHHHHHHHHHTTTCEEEE T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCEEE T ss_conf 53699869986999999999986998799 No 264 >1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B* Probab=32.04 E-value=19 Score=13.93 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=23.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCEEEEEEEC Q ss_conf 99999999999999999987521124347502620578581222222789988420107998863 Q gi|254780901|r 340 NQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE 404 (600) Q Consensus 340 N~~Rk~~e~~i~~~a~~~~~~~~~~~~~~~~ivv~~~~wh~GViGIVAsrL~e~y~kP~iv~s~~ 404 (600) -.+|+++...+.+. .+.+ ...++.|..++ .=++|+ |.=|.|.=-.|+.+++.. T Consensus 341 ~~er~rl~da~~d~-~~~l-------~GKrvaI~gdp---~~~~~l-a~fL~ElG~ep~~v~~~~ 393 (519) T 1qgu_B 341 TLERGRLVDMMLDS-HTWL-------HGKKFGLYGDP---DFVMGL-TRFLLELGCEPTVILSHN 393 (519) T ss_dssp HHHHHHHHHHHHHH-HHHH-------TTCEEEEESCH---HHHHHH-HHHHHHTTCEEEEEEETT T ss_pred HHHHHHHHHHHHHH-HHHC-------CCCEEEEECCC---HHHHHH-HHHHHHCCCEEEEEEECC T ss_conf 99999999999999-9971-------89679998883---458999-999998799456986179 No 265 >3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} Probab=32.03 E-value=19 Score=13.93 Aligned_cols=84 Identities=12% Similarity=0.230 Sum_probs=56.5 Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC---CCCCCH--------HHHHHHHHCCC Q ss_conf 9999999977997999940788615289999999997699479980787433---668897--------89887420268 Q gi|254780901|r 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVD---GYGPNP--------SLMEKFINEGA 150 (600) Q Consensus 82 ~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~e---GYGl~~--------~~i~~~~~~g~ 150 (600) +.+|.+.+ +.+.-+-+- . +.=+.+....+..+-.+.+|++-.| -.|++. ..++++++.|+ T Consensus 86 v~~l~~~~--~~~lNlE~a------~-~~e~i~ia~~~kP~qvtLVPE~r~elTTegGlDv~~~~~~L~~~i~~Lk~~gI 156 (278) T 3gk0_A 86 VRTLRPRV--KTRMNLECA------V-TPEMLDIACEIRPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGV 156 (278) T ss_dssp HHHHHHHC--SSCEEEEEC------S-SHHHHHHHHHHCCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTC T ss_pred HHHHHHHH--CCCCCCCCC------C-CHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCC T ss_conf 99999873--775577888------7-09999999966998799888885554555766206259999999999997498 Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEE Q ss_conf 689996488762345555541798279 Q gi|254780901|r 151 QLIITVDCGSTSYDALQYATNQGIDVI 177 (600) Q Consensus 151 ~LiItvD~Gi~~~e~i~~a~~~GidvI 177 (600) ..=+++|- +.++++.|++.|.|.| T Consensus 157 rVSLFIDP---d~~qi~~A~~~Gad~I 180 (278) T 3gk0_A 157 RVSLFIDP---DEAQIRAAHETGAPVI 180 (278) T ss_dssp EEEEEECS---CHHHHHHHHHHTCSEE T ss_pred CEEEEECC---CHHHHHHHHHCCCCEE T ss_conf 17998369---8789999850599979 No 266 >1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta structure, domain duplication, phosphoribosyltransferase type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis} SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A* Probab=31.95 E-value=19 Score=13.92 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=50.3 Q ss_pred CCCEEEEECCC---CCHHHHHHHHHHHHHHCCCC-EEEEECC--------CCCCCCCCCHHHHHHHHH-CCCCEEEEECC Q ss_conf 99799994078---86152899999999976994-7998078--------743366889789887420-26868999648 Q gi|254780901|r 92 SEKIMIFGDYD---VDGAASVALMMRFLSHCSVN-ANMYIPD--------RIVDGYGPNPSLMEKFIN-EGAQLIITVDC 158 (600) Q Consensus 92 ~ekI~I~gDyD---~DGitstail~~~L~~~g~~-v~~~IP~--------R~~eGYGl~~~~i~~~~~-~g~~LiItvD~ 158 (600) ++.+.|+.... -|-+.-..++..+++..|++ +...+|- |+..|=.++...+-++.+ .|++-+||+|- T Consensus 56 g~~V~ivqs~~~~~nd~l~eLll~~~a~r~~gA~~I~~ViPYl~YsRQDr~~~~ge~isak~va~lL~~~g~d~vit~Dl 135 (317) T 1dku_A 56 GCDCYIIQSTSDPVNEHIMELLIMVDALKRASAKTINIVIPYYGYARQDRKARSREPITAKLFANLLETAGATRVIALDL 135 (317) T ss_dssp TCEEEEECCCCSSHHHHHHHHHHHHHHHHHTTCSEEEEEESSCTTTTCCSCSSTTCCCHHHHHHHHHHHHTCCEEEEESC T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECHHCCCCCCHHHHHHHHHHHHCCCCEEEEECC T ss_conf 98699996789994277999999999998689955999936664332000027998705999998876249977999636 Q ss_pred CCCCH Q ss_conf 87623 Q gi|254780901|r 159 GSTSY 163 (600) Q Consensus 159 Gi~~~ 163 (600) -.... T Consensus 136 H~~~~ 140 (317) T 1dku_A 136 HAPQI 140 (317) T ss_dssp SSGGG T ss_pred CCHHH T ss_conf 84877 No 267 >3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense} Probab=31.78 E-value=19 Score=13.90 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=16.0 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEC Q ss_conf 268689996488762345555541798279961 Q gi|254780901|r 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180 (600) Q Consensus 148 ~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtD 180 (600) .|-.|.|.+|+..+-.+-..+++..|..+.+.. T Consensus 28 ~g~~l~V~~dd~~a~~di~~~~~~~G~~~~~~e 60 (87) T 3hz7_A 28 AGGVVTVLVDNDISRQNLQKMAEGMGYQSEYLE 60 (87) T ss_dssp GCCEEEEEESSHHHHHHHHHHHHHHTCEEEEEE T ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEE T ss_conf 996999993897679999999998799999999 No 268 >3crn_A Response regulator receiver domain protein, CHEY- like; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1} Probab=31.66 E-value=19 Score=13.88 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=6.0 Q ss_pred EECCCCHHHHHHHHHHH Q ss_conf 64222158899999999 Q gi|254780901|r 447 TVERVNFGRLCDFFQKF 463 (600) Q Consensus 447 ti~~~~l~~f~~~l~~~ 463 (600) -.|+-+.+.|...+.+. T Consensus 102 l~KP~~~~~L~~~i~~~ 118 (132) T 3crn_A 102 IMKPVNPRDLLEKIKEK 118 (132) T ss_dssp EESSCCHHHHHHHHHHH T ss_pred EECCCCHHHHHHHHHHH T ss_conf 98979999999999999 No 269 >2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A Probab=31.58 E-value=17 Score=14.23 Aligned_cols=11 Identities=9% Similarity=0.193 Sum_probs=6.0 Q ss_pred CCCCEEEEECC Q ss_conf 79979999407 Q gi|254780901|r 91 NSEKIMIFGDY 101 (600) Q Consensus 91 ~~ekI~I~gDy 101 (600) +.=+++++|=- T Consensus 63 Q~P~~lvi~Cs 73 (243) T 2w3q_A 63 QAPNFLWIGCA 73 (243) T ss_dssp CCCSEEEEEEC T ss_pred CCCCEEEEEEC T ss_conf 99976999775 No 270 >3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} Probab=31.58 E-value=19 Score=13.87 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=21.4 Q ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEE Q ss_conf 977997999940788615289999999997699479 Q gi|254780901|r 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN 124 (600) Q Consensus 89 i~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~ 124 (600) +...++|.+|. ..|..| +.....|+..|.++. T Consensus 52 l~~d~~iv~yC---~~G~rS-~~aa~~L~~~Gf~v~ 83 (108) T 3gk5_A 52 LERDKKYAVIC---AHGNRS-AAAVEFLSQLGLNIV 83 (108) T ss_dssp SCTTSCEEEEC---SSSHHH-HHHHHHHHTTTCCEE T ss_pred CCCCCCEEEEC---CCCHHH-HHHHHHHHHCCCCEE T ss_conf 38777767888---998499-999999998499889 No 271 >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomics, NPPSFA; 2.30A {Methanocaldococcus jannaschii DSM2661} Probab=31.50 E-value=19 Score=14.01 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=50.8 Q ss_pred CHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCE--EEECCCCCCCCCCCCCHHHHHHH Q ss_conf 9789887420268689996488762345555541798279961544765556725--65237888864334430478899 Q gi|254780901|r 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY--ALVNPNRLDDLSGQGHLCAAGVV 215 (600) Q Consensus 138 ~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~~~~~~p~a~--aivNP~~~~~~~p~~~l~gaGva 215 (600) .+..|+++.+. +++=+..-|-|..+.|...+.++|+|.| |-+++ +.||+ ..||-+ +|--+..|||- T Consensus 62 dp~~I~eI~~a-vsIPVmAK~RIGH~~EAqiLealgVD~I--DESEV---LTpADe~~HI~K~----~F~vPFVCGar-- 129 (330) T 2yzr_A 62 DPALIEEIMDA-VSIPVMAKCRIGHTTEALVLEAIGVDMI--DESEV---LTQADPFFHIYKK----KFNVPFVCGAR-- 129 (330) T ss_dssp CHHHHHHHHHH-CSSCEEEEEETTCHHHHHHHHHTTCSEE--EEETT---SCCSCSSCCCCGG----GCSSCEEEECS-- T ss_pred CHHHHHHHHHH-CCCCCCEEEECCHHHHHHHHHHCCCCCC--CCCCC---CCCCCCCCCCCCC----CCCCCEECCCC-- T ss_conf 87999999974-3776211330230799999987099852--61135---6778720213330----47776433789-- Q ss_pred HHHHHHHHHH Q ss_conf 9999999997 Q gi|254780901|r 216 FLVLVLIYRI 225 (600) Q Consensus 216 f~l~~al~~~ 225 (600) -|-.||+|. T Consensus 130 -nLGEALRRI 138 (330) T 2yzr_A 130 -NLGEAVRRI 138 (330) T ss_dssp -SHHHHHHHH T ss_pred -CHHHHHHHH T ss_conf -708999988 No 272 >2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii} Probab=31.21 E-value=20 Score=13.83 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=13.2 Q ss_pred CCEEEEECCCCCHHHHHHHHHHHH Q ss_conf 979999407886152899999999 Q gi|254780901|r 93 EKIMIFGDYDVDGAASVALMMRFL 116 (600) Q Consensus 93 ekI~I~gDyD~DGitstail~~~L 116 (600) ++|.|.|- =|.-||+-+|+-| T Consensus 2 k~IGIIGG---mgp~at~~~~~~i 22 (226) T 2zsk_A 2 KKIGIIGG---TTPESTLYYYKKY 22 (226) T ss_dssp CCEEEEEC---SSHHHHHHHHHHH T ss_pred CEEEEEEC---CCHHHHHHHHHHH T ss_conf 77999507---5879999999999 No 273 >2qh9_A UPF0215 protein AF_1433; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 1.80A {Archaeoglobus fulgidus} Probab=31.20 E-value=20 Score=13.83 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=28.2 Q ss_pred CCCEEEEECCCC-CHHHHHHHHHHHHHHHHCEEEEEEEC Q ss_conf 475026205785-81222222789988420107998863 Q gi|254780901|r 367 QASVIVVEGDRW-HPGIVGLLAARLKEKFGRPSFAISFE 404 (600) Q Consensus 367 ~~~~ivv~~~~w-h~GViGIVAsrL~e~y~kP~iv~s~~ 404 (600) +..++++.+-.. |..++|| + +|-+..++|+|.++.. T Consensus 64 ~~~vv~ldG~~~a~fn~~di-~-~l~~~~~~PvIgVak~ 100 (184) T 2qh9_A 64 QIKCIFLPGITLGGFNLVDI-Q-RVYRETKIPVVVVMRR 100 (184) T ss_dssp TEEEEEESSSEETTTEECCH-H-HHHHHHCCCEEEEESS T ss_pred CCCEEEECCEEECCCCEECH-H-HHHHHHCCCEEEEEEC T ss_conf 98599998883415836889-9-9998869998999976 No 274 >2wns_A Orotate phosphoribosyltransferase; alternative splicing, multifunctional enzyme, lyase, polymorphism, decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo sapiens} Probab=31.08 E-value=20 Score=13.81 Aligned_cols=102 Identities=19% Similarity=0.291 Sum_probs=54.5 Q ss_pred HHCCCCHHHCCCHHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHH Q ss_conf 771899556148799999999999779--979999407886152899999999976994799807874336688978988 Q gi|254780901|r 66 RLLMPDPLILTDCDKAARRIVQAIYNS--EKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLME 143 (600) Q Consensus 66 ~~l~~dP~~l~dm~~A~~ri~~ai~~~--ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~ 143 (600) +.++.+|..+.- .++.+.+.+++. +.-.|.| -+.-|+.=++.+... ++....+. .+...+||.... ++ T Consensus 36 ~~~l~~p~~~~~---l~~~la~~i~~~~~~~d~Ivg-~~~gGipla~~va~~---l~~p~~~~--RK~~k~~g~~~~-~~ 105 (205) T 2wns_A 36 RGIVSRPRLLSQ---VADILFQTAQNAGISFDTVCG-VPYTALPLATVICST---NQIPMLIR--RKETKDYGTKRL-VE 105 (205) T ss_dssp GGGGGSHHHHHH---HHHHHHHHHHHTTCCCSEEEE-CTTTTHHHHHHHHHH---HTCCEEEE--CCTTTTSSSCCS-EE T ss_pred HHHHCCHHHHHH---HHHHHHHHHHHCCCCCCEEEE-CCHHHHHHHHHHHHH---CCCCCEEE--EECCCCCCCCEE-EC T ss_conf 677369999999---999999988860888875871-202218998988875---38993467--620366663114-66 Q ss_pred HHHHCCCCEEEE---ECCCCCCHHHHHHHHHCCCCEE Q ss_conf 742026868999---6488762345555541798279 Q gi|254780901|r 144 KFINEGAQLIIT---VDCGSTSYDALQYATNQGIDVI 177 (600) Q Consensus 144 ~~~~~g~~LiIt---vD~Gi~~~e~i~~a~~~GidvI 177 (600) .....|-+.+|. +..|.|..+.++.+++.|..|+ T Consensus 106 g~i~~g~~VlIVDDvitTG~T~~~ai~~l~~~G~~v~ 142 (205) T 2wns_A 106 GTINPGETCLIIEDVVTSGSSVLETVEVLQKEGLKVT 142 (205) T ss_dssp SCCCTTCBEEEEEEEESSSHHHHHHHHHHHHTTCBCC T ss_pred CCCCCCCEEEEEEEEHHCCCCHHHHHHHHHHCCCEEE T ss_conf 8766664599996102127067989999986898899 No 275 >3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} PDB: 3o6d_A* Probab=30.96 E-value=20 Score=13.80 Aligned_cols=63 Identities=11% Similarity=0.179 Sum_probs=48.2 Q ss_pred HHHHHHHCCCCEEEEECCCCCC---CCCCC------HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEE Q ss_conf 9999997699479980787433---66889------789887420268689996488762345555541798279 Q gi|254780901|r 112 MMRFLSHCSVNANMYIPDRIVD---GYGPN------PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVI 177 (600) Q Consensus 112 l~~~L~~~g~~v~~~IP~R~~e---GYGl~------~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvI 177 (600) +.+....+..+-.+.+|++-.| -.|++ ...++.+++.|+..=+++|- +.++++.|++.|.|.| T Consensus 78 ~i~ia~~~kP~qvtLVPe~r~elTTegGld~~~~~L~~~i~~lk~~gIrVSLFIDP---d~~~i~~A~~~Gad~V 149 (260) T 3o6c_A 78 ILNLALKLKPHRVTLVPEKREELTTEGGLCLNHAKLKQSIEKLQNANIEVSLFINP---SLEDIEKSKILKAQFI 149 (260) T ss_dssp HHHHHHHHCCSEEEECCCSGGGBCTTSSBCTTCTTHHHHHHHHHHTTCEEEEEECS---CHHHHHHHHHTTCSEE T ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC---CHHHHHHHHHCCCCEE T ss_conf 99999966997589766886643246884400677999999865349628999689---9899999842798989 No 276 >1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A Probab=30.91 E-value=20 Score=13.79 Aligned_cols=51 Identities=20% Similarity=0.328 Sum_probs=30.9 Q ss_pred HHHHHHHHHHHHC---CCCEEEE--ECCCCCCCCCCCHHHHHHHH-HCCCCEEEEECCCCCCH Q ss_conf 2899999999976---9947998--07874336688978988742-02686899964887623 Q gi|254780901|r 107 ASVALMMRFLSHC---SVNANMY--IPDRIVDGYGPNPSLMEKFI-NEGAQLIITVDCGSTSY 163 (600) Q Consensus 107 tstail~~~L~~~---g~~v~~~--IP~R~~eGYGl~~~~i~~~~-~~g~~LiItvD~Gi~~~ 163 (600) +|..+|...|+.. |.++..+ +|+-..+ =.+.+.++. +.++++|||. |=++. T Consensus 34 ~sGp~l~~~l~~~~~~G~~v~~~~ivpDd~~~----I~~~l~~~~~~~~~DlViTT--GGtg~ 90 (189) T 1jlj_A 34 RSGINLKDLVQDPSLLGGTISAYKIVPDEIEE----IKETLIDWCDEKELNLILTT--GGTGF 90 (189) T ss_dssp HHHHHHHHHHHCTTTTCCEEEEEEEECSCHHH----HHHHHHHHHHTSCCSEEEEE--SCCSS T ss_pred CCHHHHHHHHHHHHCCCCEEEEEEEECCCHHH----HHHHHHHHHHCCCCCEEEEC--CCCCC T ss_conf 88899999998650289679899996897899----99999998752377689976--75566 No 277 >3jyv_B 40S ribosomal protein S0(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_B Probab=30.91 E-value=20 Score=13.79 Aligned_cols=96 Identities=22% Similarity=0.244 Sum_probs=55.0 Q ss_pred CHHHHHHHHHHH------HHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCC Q ss_conf 879999999999------97799799994078861528999999999769947998078743366889789887420268 Q gi|254780901|r 77 DCDKAARRIVQA------IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGA 150 (600) Q Consensus 77 dm~~A~~ri~~a------i~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~ 150 (600) |+++-.++|..| +.++.+|+++|-- =.... .+.++-...|. +|+..|..-|-=-|.. .....-+ T Consensus 41 dL~kT~~~L~~A~~~l~~i~~~~~ilfv~t~---~~~~~-~i~~~a~~~~~---~~v~~rW~~G~lTN~~---~~~~~~p 110 (193) T 3jyv_B 41 NVGKTWEKLVLAARIIAAIPNPEDVVAISSR---TFGQR-AVLKFAAHTGA---TPIAGRFTPGSFTNYI---TRSFKEP 110 (193) T ss_dssp CHHHHHHHHHHHHHHHTTSCSGGGEEECBCS---SHHHH-HHHHHHHHHCC---BCCBSCCCSCSSSCSS---STTCCCC T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCEEEEECC---HHHHH-HHHHHHHHCCC---CEECCCCCCCCCCCEE---EECCCCC T ss_conf 5999999999999999986179967998274---88999-99999998189---0204500488555401---1112358 Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEE-ECCCC Q ss_conf 6899964887623455555417982799-61544 Q gi|254780901|r 151 QLIITVDCGSTSYDALQYATNQGIDVIV-IDHHQ 183 (600) Q Consensus 151 ~LiItvD~Gi~~~e~i~~a~~~GidvIV-tDHH~ 183 (600) +++|.+|-. .+..++..|+.+||-||= +|-.. T Consensus 111 ~l~iv~dp~-~~~~ai~EA~~l~IPvI~ivDTn~ 143 (193) T 3jyv_B 111 RLVIVTDPR-SDAQAIKEASYVNIPVIALTDLDS 143 (193) T ss_dssp SEEECSCTT-TSHHHHHHHHHTTCCEEEEECTTC T ss_pred CCCEEECCC-CCHHHHHHHHHCCCCEEEEECCCC T ss_conf 864334676-641666778756998787506899 No 278 >3l55_A B-1,4-endoglucanase/cellulase; putative beta-1,4-endoglucanase, glycosyl hydrolase family 5, mixed alpha-beta, TIM barrel; HET: MSE; 1.60A {Prevotella bryantii} Probab=30.87 E-value=20 Score=13.79 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=19.2 Q ss_pred HHHHHHHHCCCCEEEECCCCCCCC Q ss_conf 455555417982799615447655 Q gi|254780901|r 164 DALQYATNQGIDVIVIDHHQVKSE 187 (600) Q Consensus 164 e~i~~a~~~GidvIVtDHH~~~~~ 187 (600) +.|++|.+.||-|||--||.+... T Consensus 95 ~vV~~a~~~Gl~VIlD~H~~~g~~ 118 (353) T 3l55_A 95 AIVEYAMNAGLYAIVNVHHDTAAG 118 (353) T ss_dssp HHHHHHHHHTCEEEEECCTTBSSS T ss_pred HHHHHHHHCCCEEEEEECCCCCCC T ss_conf 999999977998999735678777 No 279 >1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A Probab=30.76 E-value=20 Score=13.80 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=5.6 Q ss_pred HHCCCCEEEECCCCC Q ss_conf 417982799615447 Q gi|254780901|r 170 TNQGIDVIVIDHHQV 184 (600) Q Consensus 170 ~~~GidvIVtDHH~~ 184 (600) .+.-.|+|++|...| T Consensus 42 ~~~~~dlil~D~~mp 56 (121) T 1zh2_A 42 ATRKPDLIILDLGLP 56 (121) T ss_dssp HHHCCSEEEEESEET T ss_pred HHCCCCEEEEECCCC T ss_conf 717999999809999 No 280 >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreductase; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* Probab=30.73 E-value=20 Score=13.77 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=47.1 Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCC Q ss_conf 99999976994799807874336688978988742026868999648876234555554179827996154476555 Q gi|254780901|r 112 MMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEE 188 (600) Q Consensus 112 l~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~~~~~~ 188 (600) +...+...+..+.. -++|.....++.+++.|...+.+| ++.++...+.+.|.|+||..=++..+.. T Consensus 88 ~~~~~~~~~v~~v~-------~~~g~~~~~i~~~~~~g~~v~~~v----~s~~~A~~a~~~G~D~li~qG~eaGGh~ 153 (328) T 2gjl_A 88 YRAAIIEAGIRVVE-------TAGNDPGEHIAEFRRHGVKVIHKC----TAVRHALKAERLGVDAVSIDGFECAGHP 153 (328) T ss_dssp HHHHHHHTTCCEEE-------EEESCCHHHHHHHHHTTCEEEEEE----SSHHHHHHHHHTTCSEEEEECTTCSBCC T ss_pred HHHHHHHHCCCEEE-------CCCCCCHHHHHHHHHCCCEEEEEC----CCHHHHHHHHHHCCCCCEECCCCCCCCC T ss_conf 99999972797887-------168996999999987698899960----7799999999829992120277666677 No 281 >1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A* Probab=30.63 E-value=20 Score=13.76 Aligned_cols=91 Identities=8% Similarity=0.034 Sum_probs=50.7 Q ss_pred CEEEEE-CCCCCHHHH--HHHHHHHHHHCCCCEEE--EECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHH Q ss_conf 799994-078861528--99999999976994799--8078743366889789887420268689996488762345555 Q gi|254780901|r 94 KIMIFG-DYDVDGAAS--VALMMRFLSHCSVNANM--YIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQY 168 (600) Q Consensus 94 kI~I~g-DyD~DGits--tail~~~L~~~g~~v~~--~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~ 168 (600) +|.+.- +-+.+---+ ..-+.+.++.+|.++.+ ++.+- ..-.......++.+.+.+++-||..=.+....+.+.. T Consensus 45 ~I~vi~p~~~~s~f~~~v~~~i~~~~~~~g~~~~i~~~~~~~-~~d~~~q~~~i~~~i~~~vdgiIi~~~~~~~~~~i~~ 123 (342) T 1jx6_A 45 KISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRP-NADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEH 123 (342) T ss_dssp EEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCT-TCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHH T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCC-CCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH T ss_conf 899997999888899999999999999769956999996488-7699999999999997499889994687222899999 Q ss_pred HHHCCCCEEEECCCCCC Q ss_conf 54179827996154476 Q gi|254780901|r 169 ATNQGIDVIVIDHHQVK 185 (600) Q Consensus 169 a~~~GidvIVtDHH~~~ 185 (600) +.+.|+-+++++....+ T Consensus 124 ~~~~~~~~Vv~~~~~~~ 140 (342) T 1jx6_A 124 VLDSTNTKLILQNITTP 140 (342) T ss_dssp HHHHCSCEEEEETCCSC T ss_pred HHHCCCCEEEEEECCCC T ss_conf 99719986998402366 No 282 >1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A Probab=30.31 E-value=20 Score=13.72 Aligned_cols=44 Identities=20% Similarity=0.171 Sum_probs=29.8 Q ss_pred HHHHHHHHHHHHHHHHCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHH Q ss_conf 1222222789988420107998863798379998648986188888853 Q gi|254780901|r 380 PGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 (600) Q Consensus 380 ~GViGIVAsrL~e~y~kP~iv~s~~~dg~~kGS~RSi~g~~l~~~l~~~ 428 (600) -|=+|.-|.+...+.+--++.+++. .|+...++|+|+-++++.. T Consensus 238 fGnVG~~~A~~L~e~GakvvavsD~-----~G~iy~~~Gld~~~l~~~~ 281 (449) T 1bgv_A 238 FGNVAWGAAKKLAELGAKAVTLSGP-----DGYIYDPEGITTEEKINYM 281 (449) T ss_dssp SSHHHHHHHHHHHHHTCEEEEEEET-----TEEEECTTCSCSHHHHHHH T ss_pred CCHHHHHHHHHHHHCCCCEEEEECC-----CCEEEECCCCCHHHHHHHH T ss_conf 6828999999998669925998558-----8359941787768899999 No 283 >3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; two-domain protein containing predicted PHP-like metal-depen phosphoesterase; 2.20A {Bacteroides vulgatus atcc 8482} Probab=30.13 E-value=20 Score=13.75 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=19.2 Q ss_pred CCCCCCHHHHHHHHHCCCCEE-EECCCCC Q ss_conf 488762345555541798279-9615447 Q gi|254780901|r 157 DCGSTSYDALQYATNQGIDVI-VIDHHQV 184 (600) Q Consensus 157 D~Gi~~~e~i~~a~~~GidvI-VtDHH~~ 184 (600) |.=.+-.+-+++|++.|+|.| ||||-.. T Consensus 31 DG~~~p~~lv~~a~~~Gl~~iAiTDH~~~ 59 (343) T 3e38_A 31 DGLVWPTVRVDEAYRDGLDAISLTEHIEY 59 (343) T ss_dssp TCSBCHHHHHHHHHHTTCSEECCEEESSC T ss_pred CCCCCHHHHHHHHHHCCCCEEEECCCCCC T ss_conf 78787999999999819999998879865 No 284 >1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens} Probab=30.00 E-value=20 Score=13.68 Aligned_cols=13 Identities=23% Similarity=0.255 Sum_probs=6.5 Q ss_pred HHHHHHCCCCEEE Q ss_conf 5555417982799 Q gi|254780901|r 166 LQYATNQGIDVIV 178 (600) Q Consensus 166 i~~a~~~GidvIV 178 (600) .+.++++||+.|| T Consensus 26 ~~~l~~~~I~~Ii 38 (160) T 1yz4_A 26 LDQLGRNKITHII 38 (160) T ss_dssp HHHHHHTTCCEEE T ss_pred HHHHHHCCCEEEE T ss_conf 9999876975999 No 285 >1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A Probab=29.97 E-value=20 Score=13.68 Aligned_cols=90 Identities=16% Similarity=0.192 Sum_probs=42.8 Q ss_pred HHHHHHHHHCCCCEEEEECCCC----CHH----HHHHHHHHHHH-HCCCCEEEEECCCCCCCCCCCHHHH--H------- Q ss_conf 9999999977997999940788----615----28999999999-7699479980787433668897898--8------- Q gi|254780901|r 82 ARRIVQAIYNSEKIMIFGDYDV----DGA----ASVALMMRFLS-HCSVNANMYIPDRIVDGYGPNPSLM--E------- 143 (600) Q Consensus 82 ~~ri~~ai~~~ekI~I~gDyD~----DGi----tstail~~~L~-~~g~~v~~~IP~R~~eGYGl~~~~i--~------- 143 (600) ++...+++++++.|.|+-|+|= |=+ ..|.=...|+. .-+.-++.-++...-+--||..-.- + T Consensus 4 ie~ai~~lk~G~~Viv~Dd~~REnEgDlv~aAe~~T~e~i~fm~~~~~Glic~a~~~~~~~~L~Lp~mv~~~~~~~~~~~ 83 (227) T 1snn_A 4 VEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDICNKLGIPFMVDILEFASQKFK 83 (227) T ss_dssp HHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHHTEEEEEEEECHHHHHHHTCCCHHHHHHHHTTTCH T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEECCCHHHHHHCCCCHHHCHHHCCCCCCC T ss_conf 99999999879979999689987751489785659999999999848986895589999987799401000010110122 Q ss_pred ---HH------HHCCCCEEEEEC-----CCCCCHHHHHHHHH Q ss_conf ---74------202686899964-----88762345555541 Q gi|254780901|r 144 ---KF------INEGAQLIITVD-----CGSTSYDALQYATN 171 (600) Q Consensus 144 ---~~------~~~g~~LiItvD-----~Gi~~~e~i~~a~~ 171 (600) .. ...++..-|+|| .|||+.+...-++. T Consensus 84 ~~~~~~~~~~~~~~~t~ftvsvd~~~~~TGISa~DRa~Tir~ 125 (227) T 1snn_A 84 VLRELYPNDIPYDEKSSFSITINHRKTFTGITDNDRAFTIKK 125 (227) T ss_dssp HHHHTCCTTCTTSSSCCEEEEEEETTCSSSCSHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHH T ss_conf 111234577766788514999725788788788899999999 No 286 >2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A Probab=29.95 E-value=20 Score=13.68 Aligned_cols=47 Identities=26% Similarity=0.561 Sum_probs=34.8 Q ss_pred CCCHHHHHHHHHCCCCEEEEECCCCCC-----HHHHHHHHHCCCCEEEECCCC Q ss_conf 889789887420268689996488762-----345555541798279961544 Q gi|254780901|r 136 GPNPSLMEKFINEGAQLIITVDCGSTS-----YDALQYATNQGIDVIVIDHHQ 183 (600) Q Consensus 136 Gl~~~~i~~~~~~g~~LiItvD~Gi~~-----~e~i~~a~~~GidvIVtDHH~ 183 (600) |+.+..++++.+.++++|| +-+|... -+-.++++++||.|.+.|-.. T Consensus 48 ~l~~~~l~~ll~~~peill-iGtG~~~~~~l~~~~~~~l~~~gI~ve~m~T~~ 99 (122) T 2ab1_A 48 GVQPADVKEVVEKGVQTLV-IGRGMSEALKVPSSTVEYLKKHGIDVRVLQTEQ 99 (122) T ss_dssp CCCHHHHHHHHTTCCSEEE-EEECSSCCSCCCHHHHHHHHHTTCEEEEECHHH T ss_pred CCCHHHHHHHHCCCCCEEE-EECCCCCCCCCCHHHHHHHHHCCCEEEECCHHH T ss_conf 5498999998605999999-928988665798999999997498069877799 No 287 >1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A* Probab=29.92 E-value=20 Score=13.67 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=34.5 Q ss_pred CCCCCCCCHHHHHHHHHCCCCEEEE---EC--CCCCCH----HHHHHHHHCCCCEEEECCCCCC Q ss_conf 4336688978988742026868999---64--887623----4555554179827996154476 Q gi|254780901|r 131 IVDGYGPNPSLMEKFINEGAQLIIT---VD--CGSTSY----DALQYATNQGIDVIVIDHHQVK 185 (600) Q Consensus 131 ~~eGYGl~~~~i~~~~~~g~~LiIt---vD--~Gi~~~----e~i~~a~~~GidvIVtDHH~~~ 185 (600) +.++.|-..+.++-+++.|.+.|=. +| .|.... +.+++|+++||.||+.=||.+. T Consensus 22 ~~~~~g~~~d~~~~l~~aG~n~VRi~vW~~p~~~~~~~~~v~~~v~~A~~~gl~vil~lh~~~~ 85 (332) T 1hjs_A 22 YKNTNGNAQPLENILAANGVNTVRQRVWVNPADGNYNLDYNIAIAKRAKAAGLGVYIDFHYSDT 85 (332) T ss_dssp CBCTTSCBCCHHHHHHHTTCCEEEEEECSSCTTCTTSHHHHHHHHHHHHHTTCEEEEEECCSSS T ss_pred EECCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 7889998143999999779997995011079988678999999999999889979997155787 No 288 >3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090} Probab=29.89 E-value=20 Score=13.67 Aligned_cols=50 Identities=20% Similarity=0.177 Sum_probs=38.1 Q ss_pred EEEEEEECCCCCCHHHHHHCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEECCC Q ss_conf 7999997787870123553069987999999766545781105899998011131 Q gi|254780901|r 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEG 594 (600) Q Consensus 540 ~i~aI~Fn~~~~~~~~~~~~~~g~~idii~~l~~N~~~G~~s~QL~I~Di~p~e~ 594 (600) .+++++|+... +......|..+.+-+.|....|+++ ++-|+|.+++-.|+ T Consensus 54 ~i~~va~G~~A----e~~~l~kG~~v~v~G~L~~rs~~s~-qlv~hi~~ie~~~g 103 (103) T 3k8a_A 54 EIPARILGRQA----EEWQYRQGDCATVEGFLAQKSRRSL-MPMLRIQNIKEYKG 103 (103) T ss_dssp EEEEEEEHHHH----HHSTTCTTCEEEEEEEEEESSSSCC-CEEEEEEEEEECCC T ss_pred EEEEEEECHHH----HHHHHCCCCEEEEEEEEEECCCCCC-EEEEEEEEEEECCC T ss_conf 99999973763----4232379999999999772567688-05999999998579 No 289 >1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2 Probab=29.78 E-value=21 Score=13.65 Aligned_cols=60 Identities=18% Similarity=0.268 Sum_probs=42.0 Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCC---CEEEEECCCC-CCCCCCCHHHHHHHHHCCCCEEEEECCCC Q ss_conf 7997999940788615289999999997699---4799807874-33668897898874202686899964887 Q gi|254780901|r 91 NSEKIMIFGDYDVDGAASVALMMRFLSHCSV---NANMYIPDRI-VDGYGPNPSLMEKFINEGAQLIITVDCGS 160 (600) Q Consensus 91 ~~ekI~I~gDyD~DGitstail~~~L~~~g~---~v~~~IP~R~-~eGYGl~~~~i~~~~~~g~~LiItvD~Gi 160 (600) ..++|-|+ ||+..++.+.+.++. +|.+.+|.-. -+.|-+++.-+.++.+ .+|+|...-|- T Consensus 42 ~~~~~~VV--------aT~~~l~d~a~~I~Gd~v~V~~lvp~g~dPH~yep~p~d~~~l~~--ADlvv~~G~~~ 105 (321) T 1xvl_A 42 TEEKKKVL--------TTFTVLADMVQNVAGDKLVVESITRIGAEIHGYEPTPSDIVKAQD--ADLILYNGMNL 105 (321) T ss_dssp CCCCCEEE--------ESSHHHHHHHHHHHTTTSEEEESSCSSCCCSSCCCCHHHHHHHHT--CSEEEECCTTS T ss_pred CCCCCEEE--------EECHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHC--CCEEEEECCCH T ss_conf 78986899--------987499999999818826999806999795467689999999966--99999948850 No 290 >1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC transporter; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A Probab=29.46 E-value=21 Score=13.62 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=38.8 Q ss_pred HHHHHHHHHHHHHCC---CCEEEEECCCCC-CCCCCCHHHHHHHHHCCCCEEEEECCCC Q ss_conf 528999999999769---947998078743-3668897898874202686899964887 Q gi|254780901|r 106 AASVALMMRFLSHCS---VNANMYIPDRIV-DGYGPNPSLMEKFINEGAQLIITVDCGS 160 (600) Q Consensus 106 itstail~~~L~~~g---~~v~~~IP~R~~-eGYGl~~~~i~~~~~~g~~LiItvD~Gi 160 (600) +||+..++.+.+.++ .+|.+.+|.-.+ +-|-+++.-++++.+ .+|+|...-|- T Consensus 42 V~T~~pl~~iv~~I~gd~v~V~~Lip~g~dPH~yep~p~di~~l~~--ADliv~~G~~~ 98 (313) T 1toa_A 42 VTTIGMIADAVKNIAQGDVHLKGLMGPGVDPHLYTATAGDVEWLGN--ADLILYNGLHL 98 (313) T ss_dssp EESSHHHHHHHHHHHGGGSEEEESCCTTCCTTTCCCCHHHHHHHHH--CSEEEECCTTC T ss_pred EEECHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHC--CCEEEECCCCC T ss_conf 9988599999999808815999815989796567689999999971--99999838986 No 291 >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Probab=29.46 E-value=21 Score=13.62 Aligned_cols=76 Identities=24% Similarity=0.347 Sum_probs=44.6 Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHH---HHHHHHCCCCEEEEECCCCCCHHHHHH Q ss_conf 99799994078861528999999999769947998078743366889789---887420268689996488762345555 Q gi|254780901|r 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSL---MEKFINEGAQLIITVDCGSTSYDALQY 168 (600) Q Consensus 92 ~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~---i~~~~~~g~~LiItvD~Gi~~~e~i~~ 168 (600) -+||+|.| +-|-.++.++...+++ |.+|...+ |.. .+.-+... .+.+.+.|+.++ ..|. ++.+.+.. T Consensus 4 M~KILItG---atG~iG~~l~~~L~~~-G~~V~~~~--R~~-~~~~~~~~~~~~~~~~~~~v~~v-~~D~--~d~~~~~~ 73 (321) T 3c1o_A 4 MEKIIIYG---GTGYIGKFMVRASLSF-SHPTFIYA--RPL-TPDSTPSSVQLREEFRSMGVTII-EGEM--EEHEKMVS 73 (321) T ss_dssp CCCEEEET---TTSTTHHHHHHHHHHT-TCCEEEEE--CCC-CTTCCHHHHHHHHHHHHTTCEEE-ECCT--TCHHHHHH T ss_pred CCEEEEEC---CCCHHHHHHHHHHHHC-CCCEEEEE--CCC-CCCCCHHHHHHHHHHCCCCEEEE-EEEC--CCHHHHHH T ss_conf 88899989---9828999999999978-99089998--998-66556778887876414981999-9645--77044454 Q ss_pred HHHCCCCEEE Q ss_conf 5417982799 Q gi|254780901|r 169 ATNQGIDVIV 178 (600) Q Consensus 169 a~~~GidvIV 178 (600) +- .|.|++| T Consensus 74 ~~-~~~d~vi 82 (321) T 3c1o_A 74 VL-KQVDIVI 82 (321) T ss_dssp HH-TTCSEEE T ss_pred HC-CCCCEEE T ss_conf 24-4445887 No 292 >1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1 Probab=29.29 E-value=21 Score=13.60 Aligned_cols=52 Identities=25% Similarity=0.342 Sum_probs=23.1 Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECC Q ss_conf 979999407886152899999999976994799807874336688978988742026868999648 Q gi|254780901|r 93 EKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 (600) Q Consensus 93 ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~ 158 (600) +||+|.= |--.-..++..+|+..|.+|... ..| .++++.+.+..++++|+ |. T Consensus 4 ~rILiVD----Dd~~~~~~l~~~L~~~g~~v~~a-----~~g----~~al~~l~~~~~dlvl~-D~ 55 (136) T 1mvo_A 4 KKILVVD----DEESIVTLLQYNLERSGYDVITA-----SDG----EEALKKAETEKPDLIVL-DV 55 (136) T ss_dssp CEEEEEC----SCHHHHHHHHHHHHHTTCEEEEE-----SSH----HHHHHHHHHHCCSEEEE-ES T ss_pred CCEEEEE----CCHHHHHHHHHHHHHCCCEEEEE-----CCH----HHHHHHHHHCCCCEEEE-CC T ss_conf 8789998----99999999999999889999998-----999----99999988459989982-69 No 293 >3gmb_A 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase; flavin monooxygenase, oxidoreductase; HET: FAD; 2.10A {Mesorhizobium loti} PDB: 3gmc_A* Probab=29.24 E-value=21 Score=13.59 Aligned_cols=43 Identities=9% Similarity=0.085 Sum_probs=26.1 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 999999999997799799994078861528999999999769947998 Q gi|254780901|r 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY 126 (600) Q Consensus 79 ~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~ 126 (600) +.+..+..+.=.+-.+|+|.|= |.++.+. ...|.+.|.+|..+ T Consensus 34 ~~~~~~~~~~p~~~~~V~IVGa----GpaGl~~-A~~Lar~G~~V~Vl 76 (415) T 3gmb_A 34 SFTMANVNKTPGKTRRAEVAGG----GFAGLTA-AIALKQNGWDVRLH 76 (415) T ss_dssp -------------CCEEEEECC----SHHHHHH-HHHHHHTTCEEEEE T ss_pred CCCCCCCCCCCCCCCEEEEECC----CHHHHHH-HHHHHHCCCCEEEE T ss_conf 4201578999899898999896----7899999-99999689999999 No 294 >1kid_A Groel (HSP60 class); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Escherichia coli} SCOP: c.8.5.1 PDB: 1fya_A 1fy9_A 1la1_A 1jon_A 1dk7_A 1dkd_A Probab=29.22 E-value=21 Score=13.59 Aligned_cols=100 Identities=15% Similarity=0.339 Sum_probs=51.3 Q ss_pred HCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE-ECCCCCCCCCCCH-HHHHHHHH-CCC Q ss_conf 61487999999999997799799994078861528999999999769947998-0787433668897-89887420-268 Q gi|254780901|r 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY-IPDRIVDGYGPNP-SLMEKFIN-EGA 150 (600) Q Consensus 74 ~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~-IP~R~~eGYGl~~-~~i~~~~~-~g~ 150 (600) .+..++.-+-.+..+.+++.+++|+.+ |++|-.=++++.+-++ -+.+|... .| |||-.. +.+++++- .|. T Consensus 53 kI~~~~~ilp~Le~~~~~~rPLlIIA~-di~~eaL~~Lv~N~~k-g~l~v~aVkaP-----gfG~~r~~~LeDLAilTGa 125 (203) T 1kid_A 53 KISNIREMLPVLEAVAKAGKPLLIIAE-DVEGEALATLVVNTMR-GIVKVAAVKAP-----GFGDRRKAMLQDIATLTGG 125 (203) T ss_dssp EECCHHHHHHHHHHHHHHTCCEEEEES-EECHHHHHHHHHHHHT-TSCCEEEEECC-----SCHHHHHHHHHHHHHHHTC T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEC-CCCHHHHHHHHHHHCC-CCCCEEEECCC-----CCCHHHHHHHHHHHHHHCC T ss_conf 547787889999999854996899954-1068899999986405-87532464388-----8776789999999998399 Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CEEEECCCC Q ss_conf 689996488762345555541798--279961544 Q gi|254780901|r 151 QLIITVDCGSTSYDALQYATNQGI--DVIVIDHHQ 183 (600) Q Consensus 151 ~LiItvD~Gi~~~e~i~~a~~~Gi--dvIVtDHH~ 183 (600) -+|+-|.|.. .+.+. ...+|- .|+||..+. T Consensus 126 -~vi~~~~g~~-l~~~~-~~~LGsa~kv~itk~~T 157 (203) T 1kid_A 126 -TVISEEIGME-LEKAT-LEDLGQAKRVVINKDTT 157 (203) T ss_dssp -CCBCGGGTCC-GGGCC-GGGCEEEEEEEECSSCE T ss_pred -EEECHHCCCC-CCCCC-HHHCCCCCEEEECCCCE T ss_conf -9865102776-24399-86889755899879870 No 295 >1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1 Probab=29.16 E-value=21 Score=13.58 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=31.2 Q ss_pred CCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECC Q ss_conf 668897898874202686899964887623455555417982799615 Q gi|254780901|r 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 (600) Q Consensus 134 GYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDH 181 (600) +.|-.....+.+...+++.+|+...|-.+ ...+++.||.|+.+.. T Consensus 50 ~~~~~~~~~~~l~~~~v~~vi~~~iG~~~---~~~L~~~GI~v~~~~~ 94 (124) T 1eo1_A 50 SGGAGIRTAQIIANNGVKAVIASSPGPNA---FEVLNELGIKIYRATG 94 (124) T ss_dssp SSSCSTTHHHHHHHTTCCEEEECCSSHHH---HHHHHHHTCEEEECCS T ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCHHH---HHHHHHCCCEEEECCC T ss_conf 66630568999987799899987669889---9999987999998389 No 296 >3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} Probab=29.11 E-value=21 Score=13.57 Aligned_cols=61 Identities=15% Similarity=0.252 Sum_probs=32.9 Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHH Q ss_conf 997999940788615289999999997699479980787433668897898874202686899964887623455 Q gi|254780901|r 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDAL 166 (600) Q Consensus 92 ~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i 166 (600) .++|+|.- |--+...++...|+..|.++... .+| .++++.+.+..+++|| +|......... T Consensus 3 ~~~vLiVD----D~~~~~~~l~~~L~~~G~~v~~a-----~~g----~eAl~~l~~~~~dlil-lD~~mP~~~G~ 63 (127) T 3i42_A 3 LQQALIVE----DYQAAAETFKELLEMLGFQADYV-----MSG----TDALHAMSTRGYDAVF-IDLNLPDTSGL 63 (127) T ss_dssp CEEEEEEC----SCHHHHHHHHHHHHHTTEEEEEE-----SSH----HHHHHHHHHSCCSEEE-EESBCSSSBHH T ss_pred CCEEEEEE----CCHHHHHHHHHHHHHCCCEEEEE-----CCH----HHHHHHHHCCCCCEEE-ECCCCCCCCHH T ss_conf 88899995----78999999999999879999998-----999----9999999808999998-62789998459 No 297 >3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens} Probab=29.09 E-value=21 Score=13.57 Aligned_cols=159 Identities=12% Similarity=0.158 Sum_probs=81.2 Q ss_pred HHHHHHHHCC-CC----HHHHHHHCCCCHHHCCCCHHHCCCHHHHHHHHHHH------HHCCCCEEEEECCCCCHHHHHH Q ss_conf 9999999678-89----78988661966777189955614879999999999------9779979999407886152899 Q gi|254780901|r 42 IVARVLVNRN-VS----IDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQA------IYNSEKIMIFGDYDVDGAASVA 110 (600) Q Consensus 42 ~~a~iL~~Rg-i~----~~~~~~fL~p~l~~l~~dP~~l~dm~~A~~ri~~a------i~~~ekI~I~gDyD~DGitsta 110 (600) -+.++|.+.- +. ...++.|+...-. |=..+-|+++-.++|..| +.++.+|+++|- --.... T Consensus 47 ~i~klL~agvH~Gh~~~np~M~~YIyg~R~----nGi~IIDL~kT~~~L~~A~~~i~~i~~~~~ilfV~t---k~~~~~- 118 (253) T 3bch_A 47 DVLKFLAAGTHLGGTNLDFQMEQYIYKRKS----DGIYIINLKRTWEKLLLAARAIVAIENPADVSVISS---RNTGQR- 118 (253) T ss_dssp HHHHHHHHTTTBCCSCCCGGGGGGEEEECT----TSCEEECHHHHHHHHHHHHHHHHTCSSGGGEEEEEC---SHHHHH- T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCC----CCEEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEC---CHHHHH- T ss_conf 999999629230867479664120427378----973896399999999999999999748993899975---578899- Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEE-ECCCCCCCCCC Q ss_conf 99999997699479980787433668897898874202686899964887623455555417982799-61544765556 Q gi|254780901|r 111 LMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIV-IDHHQVKSEEI 189 (600) Q Consensus 111 il~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIV-tDHH~~~~~~p 189 (600) .+.++....|. +|+-.|+.-|-=-|. +.. ....++|+|.+|-- .+..+|..|+.+||-||= +|--..|.-. T Consensus 119 ~i~k~A~~~g~---~yv~~RWlgGtLTN~--~~~-~~~~PdliiV~dp~-~d~~AI~EA~kl~IPvIgivDTn~dp~~V- 190 (253) T 3bch_A 119 AVLKFAAATGA---TPIAGRFTPGTFTNQ--IQA-AFREPRLLVVTDPR-ADHQPLTEASYVNLPTIALCNTDSPLRYV- 190 (253) T ss_dssp HHHHHHHHHCC---EEEESCCCTTTTTCC--SCS-TTCSCSEEEESCTT-TTHHHHHHHHHTTCCEEEEECTTCCCTTC- T ss_pred HHHHHHHHHCC---CEECCCCCCCCCCHH--HHH-HCCCCCEEEEECCC-CCHHHHHHHHHCCCCEEEEECCCCCCCCC- T ss_conf 99999999789---303466678741205--665-04578635886237-74377677876499779872489995447- Q ss_pred CCEEEECCCCCCCCCCCCC-HHHHHHHHHHHHHHHHH Q ss_conf 7256523788886433443-04788999999999997 Q gi|254780901|r 190 PAYALVNPNRLDDLSGQGH-LCAAGVVFLVLVLIYRI 225 (600) Q Consensus 190 ~a~aivNP~~~~~~~p~~~-l~gaGvaf~l~~al~~~ 225 (600) .++| | |+ .+. -|-.-+.|+|+.++.+. T Consensus 191 -dypI--P----~N--DdS~kSI~Li~~lLa~ail~~ 218 (253) T 3bch_A 191 -DIAI--P----CN--NKGAHSVGLMWWMLAREVLRM 218 (253) T ss_dssp -SEEE--E----SC--CSSHHHHHHHHHHHHHHHHHH T ss_pred -CEEE--E----CC--CCHHHHHHHHHHHHHHHHHHH T ss_conf -6577--5----78--844889999999999999997 No 298 >3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A Probab=28.96 E-value=21 Score=13.55 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=16.3 Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEE Q ss_conf 8689996488762345555541798279 Q gi|254780901|r 150 AQLIITVDCGSTSYDALQYATNQGIDVI 177 (600) Q Consensus 150 ~~LiItvD~Gi~~~e~i~~a~~~GidvI 177 (600) ..+++.|..|..+..+...++++|.+++ T Consensus 57 ~~iv~~C~~G~rs~~aa~~L~~~G~~~v 84 (103) T 3eme_A 57 EIYYIVCAGGVRSAKVVEYLEANGIDAV 84 (103) T ss_dssp SEEEEECSSSSHHHHHHHHHHTTTCEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEE T ss_conf 6399994999799999999998599889 No 299 >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Probab=28.95 E-value=21 Score=13.55 Aligned_cols=116 Identities=16% Similarity=0.287 Sum_probs=52.6 Q ss_pred HHHCCCHHHHHHHHHCCCCHHHHHHHCCCCHHHCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH-- Q ss_conf 881999999999996788978988661966777189955614879999999999977997999940788615289999-- Q gi|254780901|r 35 QKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALM-- 112 (600) Q Consensus 35 ~~~~~~~~~a~iL~~Rgi~~~~~~~fL~p~l~~l~~dP~~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail-- 112 (600) +++++++.+.+-|...||+ .|.|- ++.+ ..++.+++.+++..- --=|=|.+.+| T Consensus 59 ~~l~l~~~l~~~l~~~g~~---------------~pt~i-----Q~~a---ip~il~g~dvi~~a~-TGsGKTlafllP~ 114 (434) T 2db3_A 59 TSADLRDIIIDNVNKSGYK---------------IPTPI-----QKCS---IPVISSGRDLMACAQ-TGSGKTAAFLLPI 114 (434) T ss_dssp GGSCCCHHHHHHHHHTTCC---------------SCCHH-----HHHH---HHHHHTTCCEEEECC-TTSSHHHHHHHHH T ss_pred HHCCCCHHHHHHHHHCCCC---------------CCCHH-----HHHH---HHHHHCCCCEEEECC-CCCCHHHHHHHHH T ss_conf 6779899999999977999---------------99999-----9999---999975998899889-9997899999999 Q ss_pred -HHHHHHC------CCCEEEEECCCCCCCCCCCHHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHCCCCEEEE Q ss_conf -9999976------99479980787433668897898874202--6868999648876234555554179827996 Q gi|254780901|r 113 -MRFLSHC------SVNANMYIPDRIVDGYGPNPSLMEKFINE--GAQLIITVDCGSTSYDALQYATNQGIDVIVI 179 (600) Q Consensus 113 -~~~L~~~------g~~v~~~IP~R~~eGYGl~~~~i~~~~~~--g~~LiItvD~Gi~~~e~i~~a~~~GidvIVt 179 (600) ...++.- +..+-+..|.|.. .....+.+... ...+.+.+-.|..+..........|.+++|+ T Consensus 115 l~~l~~~~~~~~~~~~~~lil~PtreL-----~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~ilv~ 185 (434) T 2db3_A 115 LSKLLEDPHELELGRPQVVIVSPTREL-----AIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIA 185 (434) T ss_dssp HHHHHHSCCCCCTTCCSEEEECSSHHH-----HHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEE T ss_pred HHHHHHCCCHHCCCCCEEEEECCCHHH-----HHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHCCCCEEEE T ss_conf 998642441010479749999287999-----99888766554210100002233886589999998648855895 No 300 >2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics; 2.10A {Streptococcus pneumoniae TIGR4} SCOP: c.108.1.6 Probab=28.84 E-value=21 Score=13.54 Aligned_cols=131 Identities=13% Similarity=0.181 Sum_probs=62.5 Q ss_pred HHHCCCHHHHHHHHHCCCCHHHHHHHCCCCHHHCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH Q ss_conf 88199999999999678897898866196677718995561487999999999997799799994078861528999999 Q gi|254780901|r 35 QKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMR 114 (600) Q Consensus 35 ~~~~~~~~~a~iL~~Rgi~~~~~~~fL~p~l~~l~~dP~~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~ 114 (600) ...+...++.++....+++.+....|..-......+....++++.+..+++. +++-+++|....- -. ... T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgv~~~L~~L~---~~g~~~~v~Sn~~-----~~--~~~ 116 (207) T 2go7_A 47 FKYSVQDLLVRVAEDRNLDVEVLNQVRAQSLAEKNAQVVLMPGAREVLAWAD---ESGIQQFIYTHKG-----NN--AFT 116 (207) T ss_dssp HHSCHHHHHHHHHHHHTCCHHHHHHHHHHHHTTCGGGCEECTTHHHHHHHHH---HTTCEEEEECSSC-----TH--HHH T ss_pred CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH---HCCCCCCCCCCCH-----HH--HHH T ss_conf 5761788887414544578999999999999972004860825999999998---6444431235740-----56--555 Q ss_pred HHHHCCCC--EEEEECCCCCCC-CCCCHHHHHHHHHC-C--CCEEEEECCCCCCHHHHHHHHHCCCCEEEE Q ss_conf 99976994--799807874336-68897898874202-6--868999648876234555554179827996 Q gi|254780901|r 115 FLSHCSVN--ANMYIPDRIVDG-YGPNPSLMEKFINE-G--AQLIITVDCGSTSYDALQYATNQGIDVIVI 179 (600) Q Consensus 115 ~L~~~g~~--v~~~IP~R~~eG-YGl~~~~i~~~~~~-g--~~LiItvD~Gi~~~e~i~~a~~~GidvIVt 179 (600) .|+.+|.. ....+-.. ..| +-.+++.+..+.+. | ++=++.|+-. ...+..|++.|+.+|-. T Consensus 117 ~l~~~~~~~~f~~v~~~~-~~~~~Kp~~~~~~~~~~~~~~~p~~~l~vgD~---~~di~~A~~aG~~~i~v 183 (207) T 2go7_A 117 ILKDLGVESYFTEILTSQ-SGFVRKPSPEAATYLLDKYQLNSDNTYYIGDR---TLDVEFAQNSGIQSINF 183 (207) T ss_dssp HHHHHTCGGGEEEEECGG-GCCCCTTSSHHHHHHHHHHTCCGGGEEEEESS---HHHHHHHHHHTCEEEES T ss_pred HHCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHCCCCHHHEEEECCC---HHHHHHHHHCCCEEEEE T ss_conf 310212222323334441-12468986999999999909693028888689---89999999849949998 No 301 >3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} Probab=28.67 E-value=21 Score=13.52 Aligned_cols=20 Identities=10% Similarity=0.122 Sum_probs=9.9 Q ss_pred CCCEEECCCCHHHHHHHHHH Q ss_conf 23146422215889999999 Q gi|254780901|r 443 AAGLTVERVNFGRLCDFFQK 462 (600) Q Consensus 443 AaG~ti~~~~l~~f~~~l~~ 462 (600) |.+|-.|+-+.+++..++.+ T Consensus 134 a~~yl~KP~~~~~L~~~i~~ 153 (157) T 3hzh_A 134 AKTFIVKPLDRAKVLQRVMS 153 (157) T ss_dssp CSEEEESSCCHHHHHHHHHH T ss_pred CCEEEECCCCHHHHHHHHHH T ss_conf 98899798999999999999 No 302 >1vky_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; TM0574, structural genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: e.53.1.1 Probab=28.65 E-value=21 Score=13.52 Aligned_cols=12 Identities=25% Similarity=0.313 Sum_probs=8.0 Q ss_pred HHHHHHHHHHHH Q ss_conf 222789988420 Q gi|254780901|r 384 GLLAARLKEKFG 395 (600) Q Consensus 384 GIVAsrL~e~y~ 395 (600) |--+-|..|... T Consensus 260 GTT~~RaLEs~~ 271 (347) T 1vky_A 260 GTTTVRTLETIA 271 (347) T ss_dssp SHHHHHHHHHHT T ss_pred ECHHHHHHHHHH T ss_conf 541899999987 No 303 >2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* Probab=28.47 E-value=22 Score=13.49 Aligned_cols=90 Identities=13% Similarity=0.192 Sum_probs=44.4 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCC--CCCC----------CCCCHHHHHHHH Q ss_conf 9999999999977997999940788615289999999997699479980787--4336----------688978988742 Q gi|254780901|r 79 DKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDR--IVDG----------YGPNPSLMEKFI 146 (600) Q Consensus 79 ~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R--~~eG----------YGl~~~~i~~~~ 146 (600) .+.+....+.+.+.++..|+....+-.-.+..-+..+.+.+++.+..-...+ +.+. ++.... ..... T Consensus 215 ~~~i~~~~~~L~~akrp~ii~g~g~~~~~~~~~l~~lae~~~~Pv~~t~~~~~~~~~~~p~~~g~~~~~~~~~~-~~~~~ 293 (570) T 2vbf_A 215 QVILSKIEESLKNAQKPVVIAGHEVISFGLEKTVTQFVSETKLPITTLNFGKSAVDESLPSFLGIYNGKLSEIS-LKNFV 293 (570) T ss_dssp HHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCCCEEECSTTTTSSCTTSTTEEEECCGGGSCHH-HHHHH T ss_pred HHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCC T ss_conf 99999999999863387896267644443057899987621786340354356556788777765445545533-11245 Q ss_pred HCCCCEEEEECCCCCCHHHHHHHH Q ss_conf 026868999648876234555554 Q gi|254780901|r 147 NEGAQLIITVDCGSTSYDALQYAT 170 (600) Q Consensus 147 ~~g~~LiItvD~Gi~~~e~i~~a~ 170 (600) ..++++|.+.+..+....-.+.. T Consensus 294 -~~~D~ii~iG~~~~~~~~~~~~~ 316 (570) T 2vbf_A 294 -ESADFILMLGVKLTDSSTGAFTH 316 (570) T ss_dssp -HHCSEEEEESCCCCGGGTTTTCC T ss_pred -CCCCEEEEEECCCCCCCCCCCCC T ss_conf -57742568741156556676542 No 304 >3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum} Probab=28.27 E-value=22 Score=13.47 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=36.1 Q ss_pred EEEEEEECCCCCCHHHHHHCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEECC Q ss_conf 799999778787012355306998799999976654578110589999801113 Q gi|254780901|r 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVE 593 (600) Q Consensus 540 ~i~aI~Fn~~~~~~~~~~~~~~g~~idii~~l~~N~~~G~~s~QL~I~Di~p~e 593 (600) .+++++|+-....+ .....|..+-+-+.|....|++++ +-|.|.+|+-.. T Consensus 49 ~i~vv~~G~~Ae~~---~~l~kG~~v~v~G~L~~rs~~~~~-lVlHi~~ie~~~ 98 (101) T 3en2_A 49 SIEALGAGKMASVL---DRIAPGTVLECVGFLARKHRSSKA-LVFHISGLEHHH 98 (101) T ss_dssp EEEEEEETHHHHHH---TTSCTTCEEEEEEEEEECC----C-EEEEEEEEEEC- T ss_pred EEEEEEEHHHHHHH---HHCCCCCEEEEEEEEEECCCCCCE-EEEEEEEEEECC T ss_conf 99999990895766---645899999999999726753890-799999987424 No 305 >2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 2zeg_A 2zep_A 2afs_A Probab=28.13 E-value=22 Score=13.45 Aligned_cols=19 Identities=21% Similarity=0.048 Sum_probs=12.6 Q ss_pred HCCCHHHHHHHHHHHHHCC Q ss_conf 6148799999999999779 Q gi|254780901|r 74 ILTDCDKAARRIVQAIYNS 92 (600) Q Consensus 74 ~l~dm~~A~~ri~~ai~~~ 92 (600) .=++..+|.+.|.+.+++- T Consensus 48 GS~~~~~a~~~i~~~~~~l 66 (329) T 2afw_A 48 GSPGSYAARQHIMQRIQRL 66 (329) T ss_dssp TSHHHHHHHHHHHHHHHTS T ss_pred CCHHHHHHHHHHHHHHHHH T ss_conf 9989999999999999985 No 306 >2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E Probab=28.13 E-value=22 Score=13.45 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=28.3 Q ss_pred HHHHHHHHHCCCC-CCCCCCCEEEECCEEEEEEEEECCCEEEEEE Q ss_conf 9999999851846-7899984684278099888884796499999 Q gi|254780901|r 490 IALIDMLESAGPY-GAGNPNPVFAFPNHKLQSIRVVNLAHLQMTF 533 (600) Q Consensus 490 ~~l~~~L~~lePF-G~gNpeP~F~~~~~~i~~~r~vGk~Hlkl~l 533 (600) .+++++|.. .|| |.|.|||+=. +..-...|.++.+|.-..- T Consensus 28 ~~li~~i~~-~p~~g~gkpE~Lk~--~l~g~wSRRI~~~hRlVY~ 69 (84) T 2a6s_A 28 NELIKDTRR-TPFEGKGKPEPLKH--NLSGFWSRRITEEHRLVYA 69 (84) T ss_dssp HHHHHHHHH-STTSSTTCCEECCG--GGTTCEEEESSSSCEEEEE T ss_pred HHHHHHHHH-CCCCCCCCCCCCCC--CCCCEEEEEECCCCEEEEE T ss_conf 999999984-77779999725436--8897289994787269999 No 307 >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenase, oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Probab=28.11 E-value=22 Score=13.45 Aligned_cols=35 Identities=9% Similarity=-0.034 Sum_probs=23.6 Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCEEEEEEEC Q ss_conf 502620578581222222789988420107998863 Q gi|254780901|r 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE 404 (600) Q Consensus 369 ~~ivv~~~~wh~GViGIVAsrL~e~y~kP~iv~s~~ 404 (600) .++++.-|- .+.--|++-.+.-+...+.++++... T Consensus 199 Dvv~~~~pl-t~~T~~li~~~~l~~mk~ga~lIN~a 233 (333) T 1dxy_A 199 DVIDLHVPG-IEQNTHIINEAAFNLMKPGAIVINTA 233 (333) T ss_dssp SEEEECCCC-CGGGTTSBCHHHHHHSCTTEEEEECS T ss_pred CEEEEECCC-CCCCCHHHCHHHHHHCCCCCEEEECC T ss_conf 546640687-67751132799996355784798515 No 308 >2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas} Probab=28.10 E-value=16 Score=14.45 Aligned_cols=43 Identities=23% Similarity=0.217 Sum_probs=26.4 Q ss_pred CCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEE Q ss_conf 6688978988742026868999648876234555554179827996 Q gi|254780901|r 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVI 179 (600) Q Consensus 134 GYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVt 179 (600) ++|-.....+.+...|++.+|+-..| ..+...+++.||.|+.. T Consensus 52 ~~g~~~~~~~~l~~~gvdvvi~~~iG---~~a~~~L~~~GI~v~~~ 94 (120) T 2wfb_A 52 SHGAGINAAQVLAKSGAGVLLTGYVG---PKAFQALQAAGIKVGQD 94 (120) T ss_dssp SSCHHHHHHHHHHHHTEEEEECSCCC---HHHHHHHHHTTCEEECC T ss_pred CCCCCHHHHHHHHHCCCCEEEECCCC---HHHHHHHHHCCCEEEEC T ss_conf 77731679999987799899977889---88999999869999984 No 309 >1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Probab=28.03 E-value=22 Score=13.44 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=19.3 Q ss_pred HHHHHHHHHH------HCCCCEEEEECCCCCHHHHHHHHHHHHH Q ss_conf 9999999999------7799799994078861528999999999 Q gi|254780901|r 80 KAARRIVQAI------YNSEKIMIFGDYDVDGAASVALMMRFLS 117 (600) Q Consensus 80 ~A~~ri~~ai------~~~ekI~I~gDyD~DGitstail~~~L~ 117 (600) +...++.+++ ..++||+|-- --|.=|+++++-..+ T Consensus 6 ~~~~~~~~~~~~~~l~~~~~kvlva~---SGG~DS~~Ll~~l~~ 46 (317) T 1wy5_A 6 RVIRKVLALQNDEKIFSGERRVLIAF---SGGVDSVVLTDVLLK 46 (317) T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEEC---CSSHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEE---CCHHHHHHHHHHHHH T ss_conf 99999999999984679978599998---182999999999999 No 310 >3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12} Probab=28.03 E-value=22 Score=13.44 Aligned_cols=69 Identities=4% Similarity=-0.034 Sum_probs=42.3 Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCC Q ss_conf 999997699479980787433668897898874202686899964887623455555417982799615447 Q gi|254780901|r 113 MRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 (600) Q Consensus 113 ~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~~ 184 (600) .+.++..|.++..+.-+.. .....+.++.+.+.+++-+|.+-+.....+-.+++...|+-|++.|-... T Consensus 44 ~~~~~~~g~~l~l~~~~~~---~~~~~~~l~~~~~~~~dgiIi~~~~~~~~~~~~~~~~~~ipvV~~~~~~~ 112 (296) T 3brq_A 44 ARMAEEKGRQLLLADGKHS---AEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLR 112 (296) T ss_dssp HHHHHHTTCEEEEECCTTS---HHHHHHHHHHHHHTTCSEEEEECSSSCHHHHHHHHHTCSSCEEEESCCCS T ss_pred HHHHHHCCCEEEEEECCCC---HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCC T ss_conf 9999985999999968999---79999999999970987377526667758999999964998899961247 No 311 >2a9v_A GMP synthase; NP_394403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1 Probab=27.99 E-value=22 Score=13.43 Aligned_cols=45 Identities=22% Similarity=0.168 Sum_probs=27.0 Q ss_pred EEEECCCCCCHHH-HHHHHHCCCCEEEECCCCCCCCCCCCEEEECC Q ss_conf 9996488762345-55554179827996154476555672565237 Q gi|254780901|r 153 IITVDCGSTSYDA-LQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 (600) Q Consensus 153 iItvD~Gi~~~e~-i~~a~~~GidvIVtDHH~~~~~~p~a~aivNP 197 (600) |..+|+|.+...- +..++++|+++-|.---..++++-..+.+|=| T Consensus 16 i~iiD~g~~~~~~i~r~L~~lG~~~~vv~~~~~~~~l~~~dgiIl~ 61 (212) T 2a9v_A 16 IYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSELDGLDGLVLS 61 (212) T ss_dssp EEEEEESCCTTCHHHHHHHHTTCBCCEEETTSCGGGGTTCSEEEEE T ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEC T ss_conf 9999998768999999999789838999697999998369919997 No 312 >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Probab=27.99 E-value=22 Score=13.43 Aligned_cols=101 Identities=12% Similarity=0.146 Sum_probs=61.6 Q ss_pred CCCHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEE Q ss_conf 14879999999999977-99799994078861528999999999769947998078743366889789887420268689 Q gi|254780901|r 75 LTDCDKAARRIVQAIYN-SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLI 153 (600) Q Consensus 75 l~dm~~A~~ri~~ai~~-~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~Li 153 (600) -.+...+...+.+++-+ +.+|++- +.-=.+. ...++..|.++. ++|-...++|+++.+.++.....+++++ T Consensus 96 t~G~~~~l~~~~~~l~~~gd~Vlv~-~P~y~~~------~~~~~~~~~~~v-~v~~~~~~~~~~d~~~l~~~~~~~~~~i 167 (388) T 1j32_A 96 TNGGKQSIFNLMLAMIEPGDEVIIP-APFWVSY------PEMVKLAEGTPV-ILPTTVETQFKVSPEQIRQAITPKTKLL 167 (388) T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEE-SSCCTHH------HHHHHHTTCEEE-EECCCGGGTTCCCHHHHHHHCCTTEEEE T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEC-CCCCHHH------HHHHHHCCCEEE-EEECCCCCCCCCCHHHHHHHCCCCCEEE T ss_conf 8889999999999980998989992-8983879------999998599899-9725644466889999997378898299 Q ss_pred EEEC----CCCC-CHHH----HHHHHHCCCCEEEECCCC Q ss_conf 9964----8876-2345----555541798279961544 Q gi|254780901|r 154 ITVD----CGST-SYDA----LQYATNQGIDVIVIDHHQ 183 (600) Q Consensus 154 ItvD----~Gi~-~~e~----i~~a~~~GidvIVtDHH~ 183 (600) +.+. +|+. +.++ ++.|++.|+-||.=|.+. T Consensus 168 ~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~vI~De~Y~ 206 (388) T 1j32_A 168 VFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYE 206 (388) T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT T ss_pred EECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCC T ss_conf 988998998734889999999963002787662234100 No 313 >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus HB8} PDB: 2iss_A* Probab=27.93 E-value=22 Score=13.43 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=51.1 Q ss_pred CHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCE--EEECCCCCCCCCCCCCHHHHHHH Q ss_conf 9789887420268689996488762345555541798279961544765556725--65237888864334430478899 Q gi|254780901|r 138 NPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY--ALVNPNRLDDLSGQGHLCAAGVV 215 (600) Q Consensus 138 ~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~~~~~~p~a~--aivNP~~~~~~~p~~~l~gaGva 215 (600) .+..|+++.+. +++=+..-|-|..+-|...+-++|+|.| |-- +.+.||+ ..||-+ +|--+..|||- T Consensus 66 dp~~I~eI~~a-VsIPVMAK~RIGHf~EAqiLealgvD~I--DES---EVLTpAD~~~HI~K~----~f~vPFVCGar-- 133 (297) T 2zbt_A 66 DPKIIKEIMAA-VSIPVMAKVRIGHFVEAMILEAIGVDFI--DES---EVLTPADEEHHIDKW----KFKVPFVCGAR-- 133 (297) T ss_dssp CHHHHHHHHTT-CSSCEEEEEETTCHHHHHHHHHTTCSEE--EEE---TTSCCSCSSCCCCGG----GCSSCEEEEES-- T ss_pred CHHHHHHHHHC-CCCCHHHCCCCCCHHHHHHHHHCCCCCC--CCC---CCCCCCCCCCCCCCC----CCCCCEECCCC-- T ss_conf 98999999861-6662211443362999999997099965--300---367767731345421----47777445888-- Q ss_pred HHHHHHHHHH Q ss_conf 9999999997 Q gi|254780901|r 216 FLVLVLIYRI 225 (600) Q Consensus 216 f~l~~al~~~ 225 (600) -|-.||+|. T Consensus 134 -nLgEALRRI 142 (297) T 2zbt_A 134 -NLGEALRRI 142 (297) T ss_dssp -SHHHHHHHH T ss_pred -CHHHHHHHH T ss_conf -728999988 No 314 >1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3 Probab=27.88 E-value=22 Score=13.42 Aligned_cols=103 Identities=11% Similarity=0.235 Sum_probs=53.9 Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHH--HHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEEC Q ss_conf 9999999999779979999407886152899--99999997699479980787433668897898874202686899964 Q gi|254780901|r 80 KAARRIVQAIYNSEKIMIFGDYDVDGAASVA--LMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157 (600) Q Consensus 80 ~A~~ri~~ai~~~ekI~I~gDyD~DGitsta--il~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD 157 (600) +..+++.+.|.+.++|.++|- |.++.. -+..-|..+|..+.++ .+ . - ...+.+ -+++|.+. T Consensus 35 ~~i~~~v~~i~~a~~I~i~G~----G~S~~~A~~~~~~L~~~g~~~~~~-~~----~-~-----~~~~~~--~DvvI~iS 97 (200) T 1vim_A 35 ETVGEMIKLIDSARSIFVIGA----GRSGYIAKAFAMRLMHLGYTVYVV-GE----T-V-----TPRITD--QDVLVGIS 97 (200) T ss_dssp HHHHHHHHHHHHSSCEEEECS----HHHHHHHHHHHHHHHHTTCCEEET-TS----T-T-----CCCCCT--TCEEEEEC T ss_pred HHHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHHHHHHHCCCCCCCC-HH----H-H-----CCCCCC--CCEEEEEC T ss_conf 999999999966990899989----689999999999987559875320-35----5-4-----143899--99899857 Q ss_pred -CCCC--CHHHHHHHHHCCCCEEE-ECCCCCCCCCCCCEEEECCCC Q ss_conf -8876--23455555417982799-615447655567256523788 Q gi|254780901|r 158 -CGST--SYDALQYATNQGIDVIV-IDHHQVKSEEIPAYALVNPNR 199 (600) Q Consensus 158 -~Gi~--~~e~i~~a~~~GidvIV-tDHH~~~~~~p~a~aivNP~~ 199 (600) .|-+ -.+.++.|+++|+.+|. ||....|=..-.-+.+.-|.. T Consensus 98 ~sG~t~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~~~~ 143 (200) T 1vim_A 98 GSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVVKGK 143 (200) T ss_dssp SSSCCHHHHHHHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCSS T ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHCCEEEEECCC T ss_conf 9977421699999999879969999799999789959999993898 No 315 >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Probab=27.84 E-value=22 Score=13.41 Aligned_cols=76 Identities=11% Similarity=0.234 Sum_probs=50.5 Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH-HHC Q ss_conf 7999940788615289999999997699479980787433668897898874202686899964887623455555-417 Q gi|254780901|r 94 KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYA-TNQ 172 (600) Q Consensus 94 kI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a-~~~ 172 (600) ||+|.| +-|..++.++...++ .|.+|... +|+..++--+....+......+.+ +.+|. ++.+.+..+ ++. T Consensus 2 kILItG---atGfiG~~lv~~Ll~-~g~~V~~~--d~~~~~~~~~~~~~~~~~~~~~~~-~~~Di--~d~~~l~~~~~~~ 72 (338) T 1udb_A 2 RVLVTG---GSGYIGSHTCVQLLQ-NGHDVIIL--DNLCNSKRSVLPVIERLGGKHPTF-VEGDI--RNEALMTEILHDH 72 (338) T ss_dssp EEEEET---TTSHHHHHHHHHHHH-TTCEEEEE--ECCSSCCTTHHHHHHHHHTSCCEE-EECCT--TCHHHHHHHHHHT T ss_pred EEEEEC---CCCHHHHHHHHHHHH-CCCEEEEE--ECCCCCCHHHHHHHHHHCCCCCEE-EEEEC--CCHHHHHHHHHHC T ss_conf 699989---887899999999997-84989999--788876355667788615788769-98017--8989999999756 Q ss_pred CCCEEE Q ss_conf 982799 Q gi|254780901|r 173 GIDVIV 178 (600) Q Consensus 173 GidvIV 178 (600) ++|+|| T Consensus 73 ~~d~Vi 78 (338) T 1udb_A 73 AIDTVI 78 (338) T ss_dssp TCSEEE T ss_pred CCCEEE T ss_conf 998999 No 316 >3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor} PDB: 3a5u_A* Probab=27.82 E-value=22 Score=13.41 Aligned_cols=51 Identities=22% Similarity=0.241 Sum_probs=36.5 Q ss_pred CEEEEEEECCCCCCHHHHHHCCCCCEEEEEEEEEEEEECC-----CCEEEEEEEEEEE Q ss_conf 7799999778787012355306998799999976654578-----1105899998011 Q gi|254780901|r 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRG-----SKRCQLRVLDASP 591 (600) Q Consensus 539 ~~i~aI~Fn~~~~~~~~~~~~~~g~~idii~~l~~N~~~G-----~~s~QL~I~Di~p 591 (600) ..+.++.|+.....+.++ ...|..+-|.++|+.+.|.. +.+.++.+.++.+ T Consensus 53 ~~~~v~~w~~~Ae~~~~~--l~KG~~V~V~GrL~~~~~~dkdG~~r~~~evva~~v~~ 108 (199) T 3eiv_A 53 LFLTCSVWRQAAENVAES--LQRGMRVIVQGRLKQRSYEDREGVKRTVYELDVDEVGA 108 (199) T ss_dssp EEEEEEEETHHHHHHHHH--CCTTCEEEEEEEEEEEC--------CCEEEEEEEEEEE T ss_pred EEEEEEHHHHHHHHHHHH--CCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEE T ss_conf 565511115789999863--58999999997977262299999889999999978100 No 317 >1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4 Probab=27.52 E-value=22 Score=13.37 Aligned_cols=30 Identities=13% Similarity=0.330 Sum_probs=16.6 Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEE Q ss_conf 8874202686899964887623455555417982799 Q gi|254780901|r 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIV 178 (600) Q Consensus 142 i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIV 178 (600) ...+.+.|+.+|=| |-| .+++++.|+.|+= T Consensus 30 a~~L~~~g~eiisT---GGT----a~~l~~~gi~v~~ 59 (464) T 1zcz_A 30 LRELHEKGWEIWAS---SGT----AKFLKSNGIEAND 59 (464) T ss_dssp HHHHHHTTCEEEEC---HHH----HHHHHHTTCCCEE T ss_pred HHHHHHCCCEEEEC---CHH----HHHHHHCCCCEEE T ss_conf 99999889899987---268----9999977996688 No 318 >3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structure initiative, PSI-2; 2.00A {Colwellia psychrerythraea 34H} Probab=27.46 E-value=22 Score=13.37 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=24.0 Q ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECC Q ss_conf 779979999407886152899999999976--994799807874336688978988742026868999648 Q gi|254780901|r 90 YNSEKIMIFGDYDVDGAASVALMMRFLSHC--SVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDC 158 (600) Q Consensus 90 ~~~ekI~I~gDyD~DGitstail~~~L~~~--g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~ 158 (600) +|+-+|+|.= |-.+...++..+|+.. |.++... .+| .++++.+.+..+++|| +|. T Consensus 6 ~n~~~ILiVD----D~~~~~~~l~~~L~~~~~~~~v~~a-----~~g----~eAl~~~~~~~pDlil-lD~ 62 (143) T 3cnb_A 6 KNDFSILIIE----DDKEFADMLTQFLENLFPYAKIKIA-----YNP----FDAGDLLHTVKPDVVM-LDL 62 (143) T ss_dssp ---CEEEEEC----SCHHHHHHHHHHHHHHCTTCEEEEE-----CSH----HHHHHHHHHTCCSEEE-EET T ss_pred CCCCEEEEEE----CCHHHHHHHHHHHHHCCCCCEEEEE-----CCH----HHHHHHHHHCCCCEEE-EEC T ss_conf 8999999991----9999999999999827898089998-----999----9999999727999999-808 No 319 >1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A Probab=27.29 E-value=23 Score=13.35 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=18.3 Q ss_pred HHHHHHHHCCCCEEEECCCCCCC Q ss_conf 45555541798279961544765 Q gi|254780901|r 164 DALQYATNQGIDVIVIDHHQVKS 186 (600) Q Consensus 164 e~i~~a~~~GidvIVtDHH~~~~ 186 (600) +.|+.|++.||.|||+=||.|.. T Consensus 73 ~~v~~a~~~gi~vildlH~~p~~ 95 (343) T 1ceo_A 73 RCLEWCKKYNLGLVLDMHHAPGY 95 (343) T ss_dssp HHHHHHHHTTCEEEEEEEECCC- T ss_pred HHHHHHHHCCCEEEEEECCCCCC T ss_conf 99999997699799983468765 No 320 >3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B* Probab=27.27 E-value=23 Score=13.34 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=23.3 Q ss_pred CCHHHHHHHHHC--CCCEEEEECCCCCCHHHHHHH-HHCCCCEEEECCCCCCCCCC Q ss_conf 897898874202--686899964887623455555-41798279961544765556 Q gi|254780901|r 137 PNPSLMEKFINE--GAQLIITVDCGSTSYDALQYA-TNQGIDVIVIDHHQVKSEEI 189 (600) Q Consensus 137 l~~~~i~~~~~~--g~~LiItvD~Gi~~~e~i~~a-~~~GidvIVtDHH~~~~~~p 189 (600) .+...+..+.+. +...+-++. +..|+++.+ ++...|+|++|.+.|.-... T Consensus 24 ~~r~~l~~~L~~~~~~~vv~~A~---~g~eAl~~l~~~~~~DliilD~~MP~~dG~ 76 (145) T 3kyj_B 24 MMRLYIASFIKTLPDFKVVAQAA---NGQEALDKLAAQPNVDLILLDIEMPVMDGM 76 (145) T ss_dssp HHHHHHHHHHTTCTTEEEEEEES---SHHHHHHHHHHCTTCCEEEECTTSCCCTTC T ss_pred HHHHHHHHHHHHCCCCEEEEEEC---CHHHHHHHHHHCCCCCEEEECCCCCCCCHH T ss_conf 99999999998599946999989---999999999836999899987899999999 No 321 >2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A* Probab=27.17 E-value=23 Score=13.33 Aligned_cols=18 Identities=0% Similarity=-0.110 Sum_probs=8.5 Q ss_pred HHHHHHHHHHHCCCCEEE Q ss_conf 899999999976994799 Q gi|254780901|r 108 SVALMMRFLSHCSVNANM 125 (600) Q Consensus 108 stail~~~L~~~g~~v~~ 125 (600) ...++...|+..|.+|.. T Consensus 13 ~~~~l~~~L~~~g~~v~~ 30 (120) T 2a9o_A 13 ISDIIKFNMTKEGYEVVT 30 (120) T ss_dssp HHHHHHHHHHHTTCEEEE T ss_pred HHHHHHHHHHHCCCEEEE T ss_conf 999999999988999999 No 322 >2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus} Probab=27.11 E-value=23 Score=13.32 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=4.0 Q ss_pred HHHHCCCCEEE Q ss_conf 55417982799 Q gi|254780901|r 168 YATNQGIDVIV 178 (600) Q Consensus 168 ~a~~~GidvIV 178 (600) .++++||+.|| T Consensus 32 ~l~~~~I~~Ii 42 (164) T 2hcm_A 32 LLVRAGITLCV 42 (164) T ss_dssp HHHHTTEEEEE T ss_pred HHHHCCCEEEE T ss_conf 99977985999 No 323 >2g4r_A MOGA, molybdopterin biosynthesis MOG protein; anomalous substructure of MOGA, biosynthetic protein; 1.92A {Mycobacterium tuberculosis} PDB: 3oi9_A Probab=27.07 E-value=23 Score=13.32 Aligned_cols=58 Identities=17% Similarity=0.307 Sum_probs=35.3 Q ss_pred CEEEEECCCCCH---HHHHHHHHHHHHHCCCCEEEE--ECCCCCCCCCCCHHHHHHHHHCCCCEEEEE Q ss_conf 799994078861---528999999999769947998--078743366889789887420268689996 Q gi|254780901|r 94 KIMIFGDYDVDG---AASVALMMRFLSHCSVNANMY--IPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 (600) Q Consensus 94 kI~I~gDyD~DG---itstail~~~L~~~g~~v~~~--IP~R~~eGYGl~~~~i~~~~~~g~~LiItv 156 (600) .|.+.||--.=| =+++.+|.+.|+..|.++.++ +|+... +-..+++. ...++++|||. T Consensus 7 ~Iitvsd~~~~G~~~D~ngp~l~~~L~~~G~~v~~~~iv~D~~~----~~~~~~~~-~~~~~DlVitt 69 (160) T 2g4r_A 7 RIVVVSSRAAAGVYTDDCGPIIAGWLEQHGFSSVQPQVVADGNP----VGEALHDA-VNAGVDVIITS 69 (160) T ss_dssp EEEEECHHHHTTSSCCCHHHHHHHHHHHTTCCCCCCEEECSSHH----HHHHHHHH-HHTTCSEEEEE T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCHHH----HHHHHHHH-HHCCCCEEEEC T ss_conf 99996783305886887099999999877996479886795799----99999999-86699999974 No 324 >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} Probab=26.89 E-value=23 Score=13.29 Aligned_cols=136 Identities=17% Similarity=0.120 Sum_probs=81.0 Q ss_pred HHHHHHHHHCCCCH-HHHHHHCCCCHHHCCCCH--HHCCCHHHHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHH Q ss_conf 99999999678897-898866196677718995--56148799999999999779-979999407886152899999999 Q gi|254780901|r 41 DIVARVLVNRNVSI-DYAKDFLNPSIRLLMPDP--LILTDCDKAARRIVQAIYNS-EKIMIFGDYDVDGAASVALMMRFL 116 (600) Q Consensus 41 ~~~a~iL~~Rgi~~-~~~~~fL~p~l~~l~~dP--~~l~dm~~A~~ri~~ai~~~-ekI~I~gDyD~DGitstail~~~L 116 (600) .-+.++|.+.-++. +.+++|-. .++...... .....-..|.....+|+.-+ ..-+|...|-+-.+. .++ T Consensus 21 ~~~~~~~~~~~~~~G~~v~~fE~-~~a~~~g~~~av~~~sGT~Al~lal~al~~~~gdeVi~p~~t~~a~~------~ai 93 (373) T 3frk_A 21 FKFEEIYKRNWFILGDEDKKFEQ-EFADYCNVNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATA------LAV 93 (373) T ss_dssp HHHHHHHHHTCCSSSHHHHHHHH-HHHHHHTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHH------HHH T ss_pred HHHHHHHHCCCCCCCHHHHHHHH-HHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEECCCCCHHHH------HHH T ss_conf 99999995799147977999999-99999783969996369999999999849999699996787403013------267 Q ss_pred HHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCC--CCHHHH-HHHHHCCCCEEEECCCCCC Q ss_conf 97699479980787433668897898874202686899964887--623455-5554179827996154476 Q gi|254780901|r 117 SHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGS--TSYDAL-QYATNQGIDVIVIDHHQVK 185 (600) Q Consensus 117 ~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi--~~~e~i-~~a~~~GidvIVtDHH~~~ 185 (600) ...|+++.+.=.+ .+.+.++.+.+++.....++.|+.|...= .+.++| +.|++.|+-||.=-=|... T Consensus 94 ~~~G~~pv~~Did--~~~~~id~~~l~~~it~~tkaIi~vh~~G~~~d~~~i~~ia~~~~i~lIeD~A~a~g 163 (373) T 3frk_A 94 SYTGAKPIFVEPD--IRTYNIDPSLIESAITEKTKAIIAVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHG 163 (373) T ss_dssp HHHSCEEEEECEE--TTTTEECGGGTGGGCCTTEEEEEEECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTT T ss_pred HHCCCCEEEECCC--CCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCHHH T ss_conf 5146740575268--886773999999853689749998688877148999999999859989999811231 No 325 >1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* Probab=26.83 E-value=22 Score=13.50 Aligned_cols=33 Identities=15% Similarity=0.309 Sum_probs=21.9 Q ss_pred EEEECCCCC-CHHHHHHHHHCCCCEEEECCCCCC Q ss_conf 999648876-234555554179827996154476 Q gi|254780901|r 153 IITVDCGST-SYDALQYATNQGIDVIVIDHHQVK 185 (600) Q Consensus 153 iItvD~Gi~-~~e~i~~a~~~GidvIVtDHH~~~ 185 (600) |+.+||.-| .+--+.+++++|.+|.|.....|. T Consensus 3 iliiD~~dSFt~Niv~~l~~~g~~v~V~~~~~~~ 36 (192) T 1i1q_B 3 ILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPA 36 (192) T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCS T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 9999788827999999999789907999899877 No 326 >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A Probab=26.64 E-value=13 Score=15.18 Aligned_cols=87 Identities=14% Similarity=0.133 Sum_probs=46.4 Q ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHHH--H--C-CCCEEEEECCCCCCC--CC--------CCHHHH---HHHHHC Q ss_conf 9997799799994078861528999999999--7--6-994799807874336--68--------897898---874202 Q gi|254780901|r 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLS--H--C-SVNANMYIPDRIVDG--YG--------PNPSLM---EKFINE 148 (600) Q Consensus 87 ~ai~~~ekI~I~gDyD~DGitstail~~~L~--~--~-g~~v~~~IP~R~~eG--YG--------l~~~~i---~~~~~~ 148 (600) +.+.++-||.|.| +-|.++.-++....+ . + ..++.+.--.| +.| |+ .....+ +...-. T Consensus 4 ~~~~~~~kVaIlG---ATG~vG~eli~lL~~Hp~~~~~~~el~~laS~~-saGk~i~~~~~~~~~~~~~~~~~~~~~~~~ 79 (352) T 2nqt_A 4 RQVANATKVAVAG---ASGYAGGEILRLLLGHPAYADGRLRIGALTAAT-SAGSTLGEHHPHLTPLAHRVVEPTEAAVLG 79 (352) T ss_dssp --CCSCEEEEEET---TTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESS-CTTSBGGGTCTTCGGGTTCBCEECCHHHHT T ss_pred CCCCCCCEEEEEC---CCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEC-CCCCCHHHHCCCCCCCCCCEECCCCHHHCC T ss_conf 0127887899989---063999999999982876457845999999657-789798995902017777500467655615 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEE Q ss_conf 68689996488762345555541798279 Q gi|254780901|r 149 GAQLIITVDCGSTSYDALQYATNQGIDVI 177 (600) Q Consensus 149 g~~LiItvD~Gi~~~e~i~~a~~~GidvI 177 (600) ++++++.+=-+..+.+-+..+.+.|.-|+ T Consensus 80 ~~Divf~alp~~~s~~~~~~~~~~~~~v~ 108 (352) T 2nqt_A 80 GHDAVFLALPHGHSAVLAQQLSPETLIID 108 (352) T ss_dssp TCSEEEECCTTSCCHHHHHHSCTTSEEEE T ss_pred CCCEEEECCCCCCHHHHHHHHHCCCEEEE T ss_conf 89999988998526666777515746997 No 327 >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Probab=26.61 E-value=23 Score=13.26 Aligned_cols=36 Identities=28% Similarity=0.546 Sum_probs=28.0 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCC Q ss_conf 2686899964887623455555417982799615447 Q gi|254780901|r 148 EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 (600) Q Consensus 148 ~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~~ 184 (600) +.+|+|| |-.|.+..-+.-.|.++|.+|+|+|.-.. T Consensus 125 et~DVlV-VG~G~AGL~AAi~Aae~GakVlvlEK~~~ 160 (571) T 1y0p_A 125 DTVDVVV-VGSGGAGFSAAISATDSGAKVILIEKEPV 160 (571) T ss_dssp EECSEEE-ECCSHHHHHHHHHHHHTTCCEEEECSSSS T ss_pred CCEEEEE-ECCCHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 8503999-89869999999999988994899967999 No 328 >3hh8_A Metal ABC transporter substrate-binding lipoprotein; metal binding, cell membrane, copper, copper transport, ION transport; 1.87A {Streptococcus pyogenes serotype M1} PDB: 1psz_A Probab=26.55 E-value=23 Score=13.25 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=43.2 Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCC---CEEEEECCCCC-CCCCCCHHHHHHHHHCCCCEEEEECCC Q ss_conf 7997999940788615289999999997699---47998078743-366889789887420268689996488 Q gi|254780901|r 91 NSEKIMIFGDYDVDGAASVALMMRFLSHCSV---NANMYIPDRIV-DGYGPNPSLMEKFINEGAQLIITVDCG 159 (600) Q Consensus 91 ~~ekI~I~gDyD~DGitstail~~~L~~~g~---~v~~~IP~R~~-eGYGl~~~~i~~~~~~g~~LiItvD~G 159 (600) ..+|+-|. ||+..++.+.+.++. +|.+.+|.... +.|-+++.-++.+.+ .+|+|++.-| T Consensus 14 ~~~kl~VV--------at~~~l~~~v~~I~gd~~~V~~L~p~g~dpH~ye~~p~di~~l~~--Adlvv~~G~~ 76 (294) T 3hh8_A 14 KSDKLKVV--------ATNSIIADMTKAIAGDKIDLHSIVPIGQDPHEYEPLPEDAEKTSN--ADVIFYNGIN 76 (294) T ss_dssp -CCSEEEE--------ESSHHHHHHHHHHHGGGEEEEECSCTTSCSSSCCCCHHHHHHHHH--CSEEEECCTT T ss_pred CCCCCEEE--------EECCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHC--CCEEEECCCC T ss_conf 68984799--------977199999999828835999806999897664579999999817--9999983886 No 329 >3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A* Probab=26.49 E-value=23 Score=13.24 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=7.4 Q ss_pred CCEEECCCCHHHHHHHHH Q ss_conf 314642221588999999 Q gi|254780901|r 444 AGLTVERVNFGRLCDFFQ 461 (600) Q Consensus 444 aG~ti~~~~l~~f~~~l~ 461 (600) -+|-.|+-+.+++.+.+. T Consensus 95 ~~~l~KP~~~~~L~~~v~ 112 (116) T 3a10_A 95 DEYVVKSFNFDELKEKVK 112 (116) T ss_dssp SEEEECCSSTHHHHHHHH T ss_pred CEEEECCCCHHHHHHHHH T ss_conf 889989899999999999 No 330 >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A Probab=26.47 E-value=23 Score=13.24 Aligned_cols=77 Identities=19% Similarity=0.256 Sum_probs=52.2 Q ss_pred CCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCE--EEECCCCCCCCCCCCCHHHHHH Q ss_conf 89789887420268689996488762345555541798279961544765556725--6523788886433443047889 Q gi|254780901|r 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY--ALVNPNRLDDLSGQGHLCAAGV 214 (600) Q Consensus 137 l~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~~~~~~p~a~--aivNP~~~~~~~p~~~l~gaGv 214 (600) -.+..|+++.+. +++=+..-|-|.-+-|...+.++|+|.| |-+++ +.||+ -.||-+. |.-+..|||- T Consensus 65 sdp~~I~eI~~a-vsIPVmAK~RIGH~~EAqiLealgVD~I--DESEV---LtpAD~~~HI~K~~----F~vPFVCGar- 133 (305) T 2nv1_A 65 ADPTIVEEVMNA-VSIPVMAKARIGHIVEARVLEAMGVDYI--DESEV---LTPADEEFHLNKNE----YTVPFVCGCR- 133 (305) T ss_dssp CCHHHHHHHHHH-CSSCEEEEECTTCHHHHHHHHHHTCSEE--EECTT---SCCSCSSCCCCGGG----CSSCEEEEES- T ss_pred CCHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHHCCCCCC--CHHCC---CCCCCCCCCCCCCC----CCCCEECCCC- T ss_conf 887999999875-3121003654575999999997299955--42025---66566110165102----7666333789- Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999970 Q gi|254780901|r 215 VFLVLVLIYRIL 226 (600) Q Consensus 215 af~l~~al~~~l 226 (600) -|-.||+|.- T Consensus 134 --nLGEALRRI~ 143 (305) T 2nv1_A 134 --DLGEATRRIA 143 (305) T ss_dssp --SHHHHHHHHH T ss_pred --CHHHHHHHHH T ss_conf --7289999886 No 331 >2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A Probab=26.47 E-value=23 Score=13.24 Aligned_cols=116 Identities=9% Similarity=0.071 Sum_probs=54.5 Q ss_pred CCEEEECCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH- Q ss_conf 21002034258999999999-9899999999999999999998752112434750262057858122222278998842- Q gi|254780901|r 317 GSRLLISDDSQELEMLAMKL-DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKF- 394 (600) Q Consensus 317 av~lL~~~d~~~a~~la~~L-~~lN~~Rk~~e~~i~~~a~~~~~~~~~~~~~~~~ivv~~~~wh~GViGIVAsrL~e~y- 394 (600) ..+.|+-+|......+..++ ..++-+ -.+..--++|.+.+..+ ...++++ +-+ =++.-|.-+.|...+- T Consensus 129 ~~~iLvvdD~~~~~~~l~~~L~~~g~~--v~~a~~g~~Al~~~~~~-----~~dlil~-D~~-mP~mdG~e~~~~ir~~~ 199 (254) T 2ayx_A 129 DMMILVVDDHPINRRLLADQLGSLGYQ--CKTANDGVDALNVLSKN-----HIDIVLS-DVN-MPNMDGYRLTQRIRQLG 199 (254) T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHTSE--EEEECCSHHHHHHHHHS-----CCSEEEE-EES-SCSSCCHHHHHHHHHHH T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCE--EEEECCHHHHHHHHHHC-----CCCEEEE-ECC-CCCCCHHHHHHHHHHHC T ss_conf 998999909899999999999987999--99989999999999847-----9989999-503-68998389999999629 Q ss_pred -HCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHH Q ss_conf -010799886379837999864898618888885303353011565322231464222158899999999986 Q gi|254780901|r 395 -GRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHN 466 (600) Q Consensus 395 -~kP~iv~s~~~dg~~kGS~RSi~g~~l~~~l~~~~~~~ll~~~GGH~~AaG~ti~~~~l~~f~~~l~~~~~~ 466 (600) .-|+|++|-..+ .-+...++. .+|.++-.|+-+.+.+.+.+..+.+. T Consensus 200 ~~~pii~lta~~~-----------~~~~~~~~~--------------~G~~~~l~KP~~~~~L~~~l~~~l~r 247 (254) T 2ayx_A 200 LTLPVIGVTANAL-----------AEEKQRCLE--------------SGMDSCLSKPVTLDVIKQTLTLYAER 247 (254) T ss_dssp CCSCEEEEESSTT-----------SHHHHHHHH--------------CCCEEEEESSCCHHHHHHHHHHHHHH T ss_pred CCCCEEEEECCCC-----------HHHHHHHHH--------------CCCCEEEECCCCHHHHHHHHHHHHHH T ss_conf 9997999989999-----------999999998--------------69989997989999999999999999 No 332 >1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3 Probab=26.42 E-value=23 Score=13.23 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=18.3 Q ss_pred HHHHHHHCCCCEEEECCCCCCCCC Q ss_conf 555554179827996154476555 Q gi|254780901|r 165 ALQYATNQGIDVIVIDHHQVKSEE 188 (600) Q Consensus 165 ~i~~a~~~GidvIVtDHH~~~~~~ 188 (600) .|+.|.+.||.|||.=||.|.... T Consensus 82 ~v~~a~~~Gi~vildlH~~~g~~~ 105 (341) T 1vjz_A 82 VIFWGEKYGIHICISLHRAPGYSV 105 (341) T ss_dssp HHHHHHHHTCEEEEEEEEETTEES T ss_pred HHHHHHHCCCEEEEEECCCCCCCC T ss_conf 999999879989997267887677 No 333 >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Probab=26.41 E-value=23 Score=13.23 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=12.1 Q ss_pred HHHHHHHHHHHHHHHCEEEEE Q ss_conf 222222789988420107998 Q gi|254780901|r 381 GIVGLLAARLKEKFGRPSFAI 401 (600) Q Consensus 381 GViGIVAsrL~e~y~kP~iv~ 401 (600) |-+|+.|.+++..++...++. T Consensus 223 G~vG~~a~~~a~~~G~~~v~v 243 (404) T 3ip1_A 223 GPIGLAAVAILKHAGASKVIL 243 (404) T ss_dssp SHHHHHHHHHHHHTTCSEEEE T ss_pred CHHHHHHHHHHHHHCCCEEEE T ss_conf 879999999999818973999 No 334 >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Probab=26.01 E-value=24 Score=13.18 Aligned_cols=116 Identities=6% Similarity=0.092 Sum_probs=54.7 Q ss_pred HHHCCCHHHHHHHHHCCCCHHHHHHHCCCCHHHCCCCHHHCCCHHHHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHH Q ss_conf 8819999999999967889789886619667771899556148799999999999779--97999940788615289999 Q gi|254780901|r 35 QKHAIPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNS--EKIMIFGDYDVDGAASVALM 112 (600) Q Consensus 35 ~~~~~~~~~a~iL~~Rgi~~~~~~~fL~p~l~~l~~dP~~l~dm~~A~~ri~~ai~~~--ekI~I~gDyD~DGitstail 112 (600) +++|+++-+-+-|...||+. |.|- ++. ...++-++ +-+++.+- --=|=|.+.+| T Consensus 28 ~~l~l~~~l~~~l~~~g~~~---------------pt~i-----Q~~---aip~il~~~~kdvlv~ap-TGsGKTl~f~l 83 (412) T 3fht_A 28 EELRLKPQLLQGVYAMGFNR---------------PSKI-----QEN---ALPLMLAEPPQNLIAQSQ-SGTGKTAAFVL 83 (412) T ss_dssp GGGTCCHHHHHHHHHTTCCS---------------CCHH-----HHH---HHHHHHSSSCCCEEEECC-TTSCHHHHHHH T ss_pred HHCCCCHHHHHHHHHCCCCC---------------CCHH-----HHH---HHHHHHCCCCCCEEEECC-CCCHHHHHHHH T ss_conf 77798999999999779999---------------9999-----999---999997599998899899-99578999999 Q ss_pred HHHHHHC-----CCCEEEEECCCCCCCCCCCHHH---HHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCC Q ss_conf 9999976-----9947998078743366889789---887420268689996488762345555541798279961544 Q gi|254780901|r 113 MRFLSHC-----SVNANMYIPDRIVDGYGPNPSL---MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 (600) Q Consensus 113 ~~~L~~~-----g~~v~~~IP~R~~eGYGl~~~~---i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~ 183 (600) -.|..+ +..+.+..|.|.. .... ..........+..++..|....+. ....+.+++|+-.+. T Consensus 84 -pil~~l~~~~~~~~~lil~p~~~l-----~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Ilv~Tp~~ 153 (412) T 3fht_A 84 -AMLSQVEPANKYPQCLCLSPTYEL-----ALQTGKVIEQMGKFYPELKLAYAVRGNKLER---GQKISEQIVIGTPGT 153 (412) T ss_dssp -HHHHHCCTTSCSCCEEEECSSHHH-----HHHHHHHHHHHTTTSTTCCEEEECTTCCCCT---TCCCCCSEEEECHHH T ss_pred -HHHHHHHCCCCCCEEEEEECCHHH-----HHHHHHHHHHHHHCCCCEEEEEECCCCHHHH---HHHCCCCEEEECCCH T ss_conf -999744103787469999074998-----8879998776520233137887315306788---763479999977507 No 335 >3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} PDB: 2zwm_A Probab=25.90 E-value=24 Score=13.16 Aligned_cols=18 Identities=6% Similarity=-0.025 Sum_probs=8.0 Q ss_pred HHHHHHHHHHHHCCCCEE Q ss_conf 289999999997699479 Q gi|254780901|r 107 ASVALMMRFLSHCSVNAN 124 (600) Q Consensus 107 tstail~~~L~~~g~~v~ 124 (600) +...++...|+..|.+|. T Consensus 13 ~~~~~l~~~L~~~g~~v~ 30 (120) T 3f6p_A 13 PIADILEFNLRKEGYEVH 30 (120) T ss_dssp HHHHHHHHHHHHTTCEEE T ss_pred HHHHHHHHHHHHCCCEEE T ss_conf 999999999998899999 No 336 >2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} Probab=25.89 E-value=24 Score=13.16 Aligned_cols=46 Identities=7% Similarity=0.094 Sum_probs=29.7 Q ss_pred CEEEEECCCCCCHHHH-HHHHHCCCCEEEECCCCCCCC----CCCCEEEECC Q ss_conf 6899964887623455-555417982799615447655----5672565237 Q gi|254780901|r 151 QLIITVDCGSTSYDAL-QYATNQGIDVIVIDHHQVKSE----EIPAYALVNP 197 (600) Q Consensus 151 ~LiItvD~Gi~~~e~i-~~a~~~GidvIVtDHH~~~~~----~p~a~aivNP 197 (600) +-|+.+|+|+.-..-| ..++++|+.+-|..+..+.++ .|++. |+-| T Consensus 25 ~~I~iiDfGsq~~~lI~R~lrelgv~~eI~p~~~~~~~i~~~~~dgI-IlSg 75 (218) T 2vpi_A 25 GAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAI-IISG 75 (218) T ss_dssp TCEEEEECSTTTTHHHHHHHHHTTCCEEEECTTCCHHHHHHHTCSEE-EEEC T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCEE-EEEC T ss_conf 98999989964889999998716966999889999899985398989-9909 No 337 >1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A* Probab=25.84 E-value=24 Score=13.16 Aligned_cols=73 Identities=11% Similarity=0.269 Sum_probs=41.3 Q ss_pred HHHHHHHHHHC-CCCEEEEECCCCC-HHHHHHHHHHHHHHCCCCEEEE--E-CCCCCCCCCCCHHH----HHHHHHCCCC Q ss_conf 99999999977-9979999407886-1528999999999769947998--0-78743366889789----8874202686 Q gi|254780901|r 81 AARRIVQAIYN-SEKIMIFGDYDVD-GAASVALMMRFLSHCSVNANMY--I-PDRIVDGYGPNPSL----MEKFINEGAQ 151 (600) Q Consensus 81 A~~ri~~ai~~-~ekI~I~gDyD~D-Gitstail~~~L~~~g~~v~~~--I-P~R~~eGYGl~~~~----i~~~~~~g~~ 151 (600) +.+++.+.+++ +.|++|..|-..- -.-...-+.+.|+..|.++..| + |+ .+.+. ++.+.+.+++ T Consensus 28 ~l~~l~~~l~~~g~r~liV~~~~~~~~~g~~~~v~~~L~~~~i~~~vf~~v~~~-------p~~~~v~~~~~~~~~~~~D 100 (371) T 1o2d_A 28 ILEKRGNIIDLLGKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEEN-------PSFDNVMKAVERYRNDSFD 100 (371) T ss_dssp HHHHHGGGGGGTCSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSS-------CBHHHHHHHHHHHTTSCCS T ss_pred HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC-------CCHHHHHHHHHHHHHCCCC T ss_conf 999999999975995899976868887359999999998769859996886689-------7999999999999854998 Q ss_pred EEEEECCCC Q ss_conf 899964887 Q gi|254780901|r 152 LIITVDCGS 160 (600) Q Consensus 152 LiItvD~Gi 160 (600) .||.+-=|+ T Consensus 101 ~IvavGGGs 109 (371) T 1o2d_A 101 FVVGLGGGS 109 (371) T ss_dssp EEEEEESHH T ss_pred EEEEECCCC T ss_conf 899828976 No 338 >2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3 Probab=25.82 E-value=24 Score=13.15 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=18.0 Q ss_pred CHH-HHHHHHHHHHHHCCCCEEEEECC Q ss_conf 615-28999999999769947998078 Q gi|254780901|r 104 DGA-ASVALMMRFLSHCSVNANMYIPD 129 (600) Q Consensus 104 DGi-tstail~~~L~~~g~~v~~~IP~ 129 (600) ||- ..+--+...|++.+++.++++.- T Consensus 13 DGp~~~~~~il~~L~~~~i~aTFFv~g 39 (195) T 2cc0_A 13 DGPSGSTQSLLNALRQNGLRATMFNQG 39 (195) T ss_dssp SCCSTTHHHHHHHHHHTTCCCEEEECH T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEEC T ss_conf 798254999999999879818999978 No 339 >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Probab=25.80 E-value=24 Score=13.15 Aligned_cols=46 Identities=28% Similarity=0.479 Sum_probs=31.6 Q ss_pred HHHHHHHHH----CCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCC Q ss_conf 789887420----26868999648876234555554179827996154476 Q gi|254780901|r 139 PSLMEKFIN----EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVK 185 (600) Q Consensus 139 ~~~i~~~~~----~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~~~ 185 (600) .+.+++... +-+|+|| |-.|.+-.-+.-.|.++|.+|+|++.-... T Consensus 107 ~~~~~~~~~~~~~e~~DVvV-VG~G~AGl~AAi~Aae~GakVillEK~~~~ 156 (566) T 1qo8_A 107 QDKIQKAIAAGPSETTQVLV-VGAGSAGFNASLAAKKAGANVILVDKAPFS 156 (566) T ss_dssp HHHHHHHHHTCCSEEEEEEE-ECCSHHHHHHHHHHHHHTCCEEEECSSSSS T ss_pred HHHHHHHHCCCCCCCCCEEE-ECCCHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 65666420289988599799-895699999999999789938999789999 No 340 >3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40} Probab=25.56 E-value=24 Score=13.12 Aligned_cols=53 Identities=17% Similarity=0.326 Sum_probs=27.3 Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCC Q ss_conf 7999940788615289999999997699479980787433668897898874202686899964887 Q gi|254780901|r 94 KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGS 160 (600) Q Consensus 94 kI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi 160 (600) +|+|.=| --+...++.+.|+..|.+|... .+| .++++.+.+..++++|+ |... T Consensus 12 ~VLiVDD----~~~~r~~l~~~L~~~g~~v~~a-----~~g----~eAl~~~~~~~~dlii~-D~~m 64 (140) T 3c97_A 12 SVLIAED----NDICRLVAAKALEKCTNDITVV-----TNG----LQALQAYQNRQFDVIIM-DIQM 64 (140) T ss_dssp EEEEECC----CHHHHHHHHHHHTTTCSEEEEE-----SSH----HHHHHHHHHSCCSEEEE-CTTC T ss_pred EEEEEEC----CHHHHHHHHHHHHHCCCEEEEE-----CCH----HHHHHHHHHCCCCEEEE-ECCC T ss_conf 8999939----8999999999999879999998-----999----99999987079988999-4799 No 341 >2r79_A Periplasmic binding protein; heme transport, transport protein; HET: HEM; 2.40A {Pseudomonas aeruginosa} Probab=25.53 E-value=24 Score=13.12 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=25.9 Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEC Q ss_conf 887420268689996488762345555541798279961 Q gi|254780901|r 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID 180 (600) Q Consensus 142 i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtD 180 (600) +|++.+-.++|||+.+ .....+..+...+.|+.+++.+ T Consensus 52 ~E~i~~l~PDlIi~~~-~~~~~~~~~~~~~~~i~~~~~~ 89 (283) T 2r79_A 52 AEGVLALRPDILIGTE-EMGPPPVLKQLEGAGVRVETLS 89 (283) T ss_dssp HHHHHTTCCSEEEECT-TCCCHHHHHHHHHTTCCEEECC T ss_pred HHHHHHCCCCEEEEEC-CCCCHHHHHHHHHCCCCEEEEC T ss_conf 9999724999699504-5453056777762387147724 No 342 >3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301} Probab=25.23 E-value=24 Score=13.08 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=33.3 Q ss_pred CEEEEEEECCCCCCHHHHHHCCCCCEEEEEEEEEEEEECCC-----CEEEEEEEEE Q ss_conf 77999997787870123553069987999999766545781-----1058999980 Q gi|254780901|r 539 ETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGS-----KRCQLRVLDA 589 (600) Q Consensus 539 ~~i~aI~Fn~~~~~~~~~~~~~~g~~idii~~l~~N~~~G~-----~s~QL~I~Di 589 (600) ..++++.|+.....+.++ ...|..+-+.++++.+.|.++ .++++.+..+ T Consensus 53 ~~i~v~~wg~~Ae~~~~~--l~kG~~V~V~G~l~~~~~~~kdG~k~~~~ei~a~~i 106 (108) T 3koj_A 53 ARLKVVGWGAVAQELQDR--CRLNDEVVLEGRLRINSLLKPDGNREKQTELTVTRV 106 (108) T ss_dssp EEEEEEEETHHHHHHHHH--CCTTCEEEEEEEEEEEC--------CCEEEEEEEEE T ss_pred EEEEEEEEHHHHHHHHHH--CCCCCEEEEEEEEECEEEECCCCCEEEEEEEEEEEC T ss_conf 799999988999999986--089999999999877288999998999999999870 No 343 >3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, cytoplasm, phosphoprotein, protein binding; 2.20A {Homo sapiens} Probab=25.23 E-value=24 Score=13.08 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=30.2 Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHHCEEEEEEEC Q ss_conf 347502620578581222222789988420107998863 Q gi|254780901|r 366 QQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFE 404 (600) Q Consensus 366 ~~~~~ivv~~~~wh~GViGIVAsrL~e~y~kP~iv~s~~ 404 (600) +.+.++|+.+++ +.|=-|++|+|....++..|.++-.. T Consensus 84 ~~P~VlVlcG~G-nNGgDGlv~AR~L~~~G~~V~v~l~~ 121 (259) T 3d3k_A 84 QRPTVALLCGPH-VKGAQGISCGRHLANHDVQVILFLPN 121 (259) T ss_dssp CCCEEEEEECSS-HHHHHHHHHHHHHHHTTCEEEEECCB T ss_pred CCCEEEEEECCC-CCHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 898699998999-87699999999999789969999578 No 344 >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 Probab=25.19 E-value=24 Score=13.07 Aligned_cols=92 Identities=11% Similarity=0.180 Sum_probs=61.0 Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCC- Q ss_conf 9999999997799799994078861528999999999769947998078743366889789887420268689996488- Q gi|254780901|r 81 AARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCG- 159 (600) Q Consensus 81 A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~G- 159 (600) -.+.+.+.+++..-|.|.-..|.|- ..-+.++|..-|.++.-. .-|-.+ ..++|+.+.++.++++|-+ | T Consensus 6 ~~~~~~~~l~~~~iipvlr~~~~~~---~~~~~~al~~~Gi~~iEI-Tl~t~~----a~~~i~~l~~~~p~~~vGa--GT 75 (224) T 1vhc_A 6 TTQQIIEKLRELKIVPVIALDNADD---ILPLADTLAKNGLSVAEI-TFRSEA----AADAIRLLRANRPDFLIAA--GT 75 (224) T ss_dssp CHHHHHHHHHHHCEEEEECCSSGGG---HHHHHHHHHHTTCCEEEE-ETTSTT----HHHHHHHHHHHCTTCEEEE--ES T ss_pred CHHHHHHHHHHCCEEEEEECCCHHH---HHHHHHHHHHCCCCEEEE-ECCCCH----HHHHHHHHHHHCCCEEEEE--EC T ss_conf 5999999999789799996899999---999999999879988999-689803----9999999998689918962--02 Q ss_pred CCCHHHHHHHHHCCCCEEEECCC Q ss_conf 76234555554179827996154 Q gi|254780901|r 160 STSYDALQYATNQGIDVIVIDHH 182 (600) Q Consensus 160 i~~~e~i~~a~~~GidvIVtDHH 182 (600) +.+.+.++.+.+.|.+.||+=+= T Consensus 76 Vl~~~~~~~a~~aGA~FivSP~~ 98 (224) T 1vhc_A 76 VLTAEQVVLAKSSGADFVVTPGL 98 (224) T ss_dssp CCSHHHHHHHHHHTCSEEECSSC T ss_pred CCCHHHHHHHHHHCCCEEECCCC T ss_conf 04579999999837998972789 No 345 >1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1 Probab=25.17 E-value=13 Score=15.11 Aligned_cols=95 Identities=20% Similarity=0.302 Sum_probs=60.5 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC---CEEEEECCC-CCCC-CCCCHHHHHHHHHCCCC Q ss_conf 879999999999977997999940788615289999999997699---479980787-4336-68897898874202686 Q gi|254780901|r 77 DCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSV---NANMYIPDR-IVDG-YGPNPSLMEKFINEGAQ 151 (600) Q Consensus 77 dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~---~v~~~IP~R-~~eG-YGl~~~~i~~~~~~g~~ 151 (600) .++..+..+.+-=. .+.-.|.--||..==.+|--=..+|+.+|. ++-|.-|+| -+|| ||-|+..+....+ .. T Consensus 14 ~fq~~i~~L~~fW~-~~GC~i~qpyd~evGAgT~~P~T~lr~lgp~pw~~aYvqPsrRP~DgRYGeNPNRLq~y~Q--fQ 90 (298) T 1j5w_A 14 YLQDVIMKLNDFWA-SKGCLLEQPYDMEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGENPNRLQRYFQ--YQ 90 (298) T ss_dssp CHHHHHHHHHHHHH-HTTCEECCCCSSCCSSGGGSHHHHTGGGCSSCEEEEEEEEEECCC-----CCTTCCSEEEE--EE T ss_pred CHHHHHHHHHHHHH-HCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHCEEEE--EE T ss_conf 29999999999998-7796887675542464668889998631987632664246779998876789323110034--58 Q ss_pred EEEEECCCCCCHHHH--HHHHHCCCCE Q ss_conf 899964887623455--5554179827 Q gi|254780901|r 152 LIITVDCGSTSYDAL--QYATNQGIDV 176 (600) Q Consensus 152 LiItvD~Gi~~~e~i--~~a~~~Gidv 176 (600) .||-..- .+..++ +-++.+|||. T Consensus 91 VilKPsp--~n~q~lYL~SL~~igid~ 115 (298) T 1j5w_A 91 VIIKPSP--ENSQELYLESLEYLGINL 115 (298) T ss_dssp EEEESCC--SSHHHHHHHHHHHTTCCT T ss_pred EEECCCC--HHHHHHHHHHHHHHCCCC T ss_conf 9977894--668999999999839992 No 346 >2q05_A Late protein H1, dual specificity protein phosphatase; structural genomics, APC7320, PSI-2, protein structure initiative; HET: MSE; 2.57A {Vaccinia virus WR} Probab=25.16 E-value=24 Score=13.07 Aligned_cols=18 Identities=11% Similarity=0.041 Sum_probs=6.3 Q ss_pred HHHHCCCCCCCCCHHHHH Q ss_conf 542011114441189999 Q gi|254780901|r 248 ATVCDVVPLIGLNRAYVV 265 (600) Q Consensus 248 GTvaD~vpL~~eNR~lvk 265 (600) -.|-+.-|....|.-+.+ T Consensus 165 ~~Vr~~Rp~~~pN~gF~~ 182 (195) T 2q05_A 165 HSMRDLRGAFVENPSFKR 182 (195) T ss_dssp HHHHHHHSCCCCCHHHHH T ss_pred HHHHHHCCCCCCCHHHHH T ss_conf 999997997688988999 No 347 >1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A Probab=25.03 E-value=25 Score=13.05 Aligned_cols=73 Identities=5% Similarity=-0.044 Sum_probs=44.8 Q ss_pred HHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCC Q ss_conf 9999769947998078743366889789887420268689996488762345555541798279961544765556 Q gi|254780901|r 114 RFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEI 189 (600) Q Consensus 114 ~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~~~~~~p 189 (600) +.++..|.++..+.-+.-. -...+.++.+...+++-+|...+..............++-+++.|...+....+ T Consensus 31 ~~~~~~gy~~~l~~~~~~~---~~e~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~ 103 (289) T 1dbq_A 31 KNCFQKGYTLILGNAWNNL---EKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFT 103 (289) T ss_dssp HHHHHHTCEEEEEECTTCH---HHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHHTTTSCEEEEECSSCCSSSC T ss_pred HHHHHCCCEEEEEECCCCH---HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCC T ss_conf 9999869999999689998---999999999985598866531001232589999852699789943666675466 No 348 >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 Probab=24.83 E-value=25 Score=13.02 Aligned_cols=12 Identities=8% Similarity=0.515 Sum_probs=6.0 Q ss_pred HCCCCEEEEECC Q ss_conf 779979999407 Q gi|254780901|r 90 YNSEKIMIFGDY 101 (600) Q Consensus 90 ~~~ekI~I~gDy 101 (600) -.++++++++=. T Consensus 31 f~~K~vvL~f~P 42 (241) T 1nm3_A 31 FDNKTVIVFSLP 42 (241) T ss_dssp HTTSEEEEEEES T ss_pred HCCCEEEEEEEC T ss_conf 499839999836 No 349 >2j28_9 Signal recognition particle 54; ribosome, protein/RNA complex; 8.0A {Escherichia coli} Probab=24.82 E-value=16 Score=14.57 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=14.6 Q ss_pred HHHHHHHHHHHHHHCE----EEEEEECCCCEEE Q ss_conf 2222278998842010----7998863798379 Q gi|254780901|r 382 IVGLLAARLKEKFGRP----SFAISFEEDGKGI 410 (600) Q Consensus 382 ViGIVAsrL~e~y~kP----~iv~s~~~dg~~k 410 (600) .+|--|-..+..|++. .+|+|.- ||.++ T Consensus 223 ~~gq~~~~qa~~f~~~~~~~gvIlTKl-Dg~ak 254 (430) T 2j28_9 223 MTGQDAANTAKAFNEALPLTGVVLTKV-DGDAR 254 (430) T ss_dssp TTGGGGHHHHHHHHTTCSSCEEEEECS-SSCSC T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEC-CCCCC T ss_conf 567567999999986358860588502-56777 No 350 >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, alternative splicing, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Probab=24.80 E-value=25 Score=13.02 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=7.8 Q ss_pred HHHHHHHHHHHHHHHCEEE Q ss_conf 2222227899884201079 Q gi|254780901|r 381 GIVGLLAARLKEKFGRPSF 399 (600) Q Consensus 381 GViGIVAsrL~e~y~kP~i 399 (600) |-+|+.|.+++...+..++ T Consensus 173 g~vG~~aiq~a~~~g~~vi 191 (354) T 2j8z_A 173 SGVGTAAIQLTRMAGAIPL 191 (354) T ss_dssp SHHHHHHHHHHHHTTCEEE T ss_pred CHHHHHHHHHHHHCCCEEE T ss_conf 9899999999875598499 No 351 >3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein structure initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A Probab=24.80 E-value=25 Score=13.02 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=37.6 Q ss_pred EEEEEEECCCCCCHHHHHHCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEECCCC Q ss_conf 79999977878701235530699879999997665457811058999980111311 Q gi|254780901|r 540 TLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGH 595 (600) Q Consensus 540 ~i~aI~Fn~~~~~~~~~~~~~~g~~idii~~l~~N~~~G~~s~QL~I~Di~p~e~~ 595 (600) .+++++|+-.... ......|..+-+.+.|....|+++ ++-|.|.+++.+.+. T Consensus 48 ~i~vva~G~~Ae~---~~~l~kG~~v~v~G~L~~rs~~s~-~lvlHi~~iq~i~g~ 99 (115) T 3fhw_A 48 TISAVALGDLALL---LADTPLGTEMQVQGFLAPARKDSV-KVKLHLQQARRIAGS 99 (115) T ss_dssp EEEEEEETHHHHH---HTTCCTTCEEEEEEEEEESSTTCS-SEEEEEEEEEECCCS T ss_pred EEEEEEEHHHHHH---HHHCCCCCEEEEEEEECCCCCCCC-CEEEEEEEEEEECCC T ss_conf 9999999488232---041379999999999652668898-369998999992688 No 352 >3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCSG, PSI-2, midwest center for structural genomics; 2.00A {Thermoplasma acidophilum} Probab=24.76 E-value=25 Score=13.01 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=30.0 Q ss_pred HHHHHHHHHHHHCCCCEEEE--ECCCCCCCCCCCHHHHHHHHHCCCCEEEEE Q ss_conf 28999999999769947998--078743366889789887420268689996 Q gi|254780901|r 107 ASVALMMRFLSHCSVNANMY--IPDRIVDGYGPNPSLMEKFINEGAQLIITV 156 (600) Q Consensus 107 tstail~~~L~~~g~~v~~~--IP~R~~eGYGl~~~~i~~~~~~g~~LiItv 156 (600) |-+..|.+.|..+|.++.++ +|+-..+ -.++++++.+. +++|||. T Consensus 23 tN~~~l~~~L~~~G~~v~~~~~v~D~~~~----i~~~l~~~~~~-~d~vitt 69 (172) T 3kbq_A 23 TNAAFIGNFLTYHGYQVRRGFVVMDDLDE----IGWAFRVALEV-SDLVVSS 69 (172) T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECSCHHH----HHHHHHHHHHH-CSEEEEE T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCHHH----HHHHHHHHHHC-CCEEEEC T ss_conf 19999999999879917799998984999----99999998734-8899981 No 353 >3i09_A Periplasmic branched-chain amino acid-binding protein; YP_104442.1, periplasmic binding protein BMA293, structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} Probab=24.67 E-value=25 Score=13.00 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=16.2 Q ss_pred HHHHHH-CCCCEEEEECCCCCCHHHHHHHHHCCCCEE Q ss_conf 887420-268689996488762345555541798279 Q gi|254780901|r 142 MEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVI 177 (600) Q Consensus 142 i~~~~~-~g~~LiItvD~Gi~~~e~i~~a~~~GidvI 177 (600) .+++++ +++..||-.-+...+......+.+.++-+| T Consensus 63 a~~li~~d~V~aiiG~~~S~~~~a~~~~~~~~~vp~i 99 (375) T 3i09_A 63 AREWMDRGGLDLLVGGTNSATALSMNQVAAEKKKVYI 99 (375) T ss_dssp HHHHHHHSCEEEEEECSCHHHHHHHHHHHHHHTCEEE T ss_pred HHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCC T ss_conf 9999972897699972560677887777875186302 No 354 >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} Probab=24.51 E-value=25 Score=12.98 Aligned_cols=34 Identities=21% Similarity=0.135 Sum_probs=23.9 Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 7999940788615289999999997699479980 Q gi|254780901|r 94 KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYI 127 (600) Q Consensus 94 kI~I~gDyD~DGitstail~~~L~~~g~~v~~~I 127 (600) -..++.|.-+|-..-+.-+.+..+..|+++..+- T Consensus 158 ~~~~~~dg~~d~~~l~~~l~~~a~~~Ga~i~~~t 191 (561) T 3da1_A 158 GGGIYVEYRTDDARLTLEIMKEAVARGAVALNYM 191 (561) T ss_dssp EEEEEEEEECCHHHHHHHHHHHHHHTTCEEEESE T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCE T ss_conf 8897056555818888999999985898765440 No 355 >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Probab=24.48 E-value=25 Score=12.98 Aligned_cols=48 Identities=8% Similarity=0.195 Sum_probs=30.8 Q ss_pred HHHCCCH---HHHHHHHHHHHHCCCC---EEEEECCCCCHHHHHHHHHHHHHHCCCC Q ss_conf 5561487---9999999999977997---9999407886152899999999976994 Q gi|254780901|r 72 PLILTDC---DKAARRIVQAIYNSEK---IMIFGDYDVDGAASVALMMRFLSHCSVN 122 (600) Q Consensus 72 P~~l~dm---~~A~~ri~~ai~~~ek---I~I~gDyD~DGitstail~~~L~~~g~~ 122 (600) |..|.|+ +++++.+.+++.++.. +++||. .|+--|++...+.+.++.+ T Consensus 19 P~~l~diig~~~~~~~L~~~i~~~~~~~~~L~~Gp---~G~GKt~~a~~~~~~l~~~ 72 (250) T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGT---RGVGKTSIARLLAKGLNCE 72 (250) T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECS---TTSCHHHHHHHHHHHHHCT T ss_pred CCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECC---CCCCHHHHHHHHHHHHCCC T ss_conf 99899814939999999999986997605987899---9987899999999984785 No 356 >3kg2_A Glutamate receptor 2; ION channel, membrane protein, alternative splicing, cell membrane, glycoprotein, ION transport, membrane; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Probab=24.44 E-value=25 Score=12.97 Aligned_cols=107 Identities=11% Similarity=0.040 Sum_probs=65.1 Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC--CCCCHHHHHHHHHCCCCEE Q ss_conf 48799999999999779979999407886152899999999976994799807874336--6889789887420268689 Q gi|254780901|r 76 TDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDG--YGPNPSLMEKFINEGAQLI 153 (600) Q Consensus 76 ~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eG--YGl~~~~i~~~~~~g~~Li 153 (600) ++..+|+..+.+... -.+|.|..|- ..|.....-+.+.+...|.++.+.....+... -.--...+.++++.+++.| T Consensus 106 p~~~~ai~~ll~~~~-W~~vaiiyd~-~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~vi 183 (823) T 3kg2_A 106 PDLKGALLSLIEYYQ-WDKFAYLYDS-DRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRV 183 (823) T ss_dssp CCCHHHHHHHHHHTT-CSEEEEEECG-GGCTHHHHHHHHHHHHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEE T ss_pred CCHHHHHHHHHHHCC-CCEEEEEEEC-CHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEE T ss_conf 289999999999879-9899999979-55388999999999976998999998715888744779999998762599889 Q ss_pred EEECCCCCCHHHHHHHHHCCCC-----EEEECCCCC Q ss_conf 9964887623455555417982-----799615447 Q gi|254780901|r 154 ITVDCGSTSYDALQYATNQGID-----VIVIDHHQV 184 (600) Q Consensus 154 ItvD~Gi~~~e~i~~a~~~Gid-----vIVtDHH~~ 184 (600) |..-.+..+..-+..|+++|+. .|++|.-.. T Consensus 184 v~~~~~~~~~~il~~a~~~g~~~~~~~wi~~~~~~~ 219 (823) T 3kg2_A 184 ILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFT 219 (823) T ss_dssp EEECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSS T ss_pred EEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC T ss_conf 999352787899999997377887469998374001 No 357 >2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA; HET: ADP; 2.00A {Pyrococcus horikoshii OT3} Probab=24.44 E-value=25 Score=12.97 Aligned_cols=40 Identities=25% Similarity=0.381 Sum_probs=26.5 Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECC Q ss_conf 7898874202686899964887623455555417982799615 Q gi|254780901|r 139 PSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDH 181 (600) Q Consensus 139 ~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDH 181 (600) ....+.+.+.|++.+|+-..|-. +...+++.||.|+.+.. T Consensus 53 ~~~~~~l~~~gv~~vi~~~iG~~---a~~~l~~~GI~v~~~~~ 92 (121) T 2yx6_A 53 GDLPNFIKDHGAKIVLTYGIGRR---AIEYFNSLGISVVTGVY 92 (121) T ss_dssp CHHHHHHHHTTCCEEECSBCCHH---HHHHHHHTTCEEECSBC T ss_pred CHHHHHHHHCCCCEEEECCCCHH---HHHHHHHCCCEEEECCC T ss_conf 20689998769989998867988---99999987999998489 No 358 >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} Probab=24.43 E-value=6.8 Score=17.44 Aligned_cols=19 Identities=5% Similarity=0.162 Sum_probs=12.5 Q ss_pred HHHHHHCCCCEEEECCCCC Q ss_conf 5555417982799615447 Q gi|254780901|r 166 LQYATNQGIDVIVIDHHQV 184 (600) Q Consensus 166 i~~a~~~GidvIVtDHH~~ 184 (600) .+.+.++|..|+..|+--. T Consensus 176 A~~LA~~Gf~Vla~dy~g~ 194 (422) T 3k2i_A 176 ASLLAGHGFATLALAYYNF 194 (422) T ss_dssp HHHHHTTTCEEEEEECSSS T ss_pred HHHHHHCCCEEEEEECCCC T ss_conf 9999978989999807899 No 359 >1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A* Probab=24.36 E-value=8.6 Score=16.64 Aligned_cols=19 Identities=16% Similarity=0.104 Sum_probs=8.7 Q ss_pred HHHHHCCCCEEEECCCCCC Q ss_conf 5554179827996154476 Q gi|254780901|r 167 QYATNQGIDVIVIDHHQVK 185 (600) Q Consensus 167 ~~a~~~GidvIVtDHH~~~ 185 (600) +.+++.-.|+||+|.+.|. T Consensus 41 ~~l~~~~~dlii~D~~lp~ 59 (124) T 1dc7_A 41 AALASKTPDVLLSDIRMPG 59 (124) T ss_dssp HHSSSCCCSCEEECSCSSH T ss_pred HHHHHCCCCEEEECCCCCC T ss_conf 9998389999987588999 No 360 >3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A* Probab=24.34 E-value=25 Score=12.96 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=30.6 Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCC--CHHHHHHHHHCCCCEEE Q ss_conf 799807874336688978988742026868999648876--23455555417982799 Q gi|254780901|r 123 ANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGST--SYDALQYATNQGIDVIV 178 (600) Q Consensus 123 v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~--~~e~i~~a~~~GidvIV 178 (600) +.+|+-+.++||..--.+.++.+.+.|.+.|=..|=|+. ..+..+.+++.|+.+|+ T Consensus 15 ~DLH~HT~ySDG~~~~eelv~~A~e~G~~~iaITDH~~l~G~~~~~~~a~~~gi~~i~ 72 (301) T 3o0f_A 15 WDIHCHTVFSDGTETPRTLVEQARKLGLHGVAIADHDTTAGWDEATEASEEIGLPLLL 72 (301) T ss_dssp EEEEECCTTTTCSSCHHHHHHHHHHTTCSEEEECCBTCCTTHHHHHHHHHHHTCCEEE T ss_pred EECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCC T ss_conf 6478185743899989999999998899999997899850299999999874998115 No 361 >1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1 Probab=24.34 E-value=25 Score=12.96 Aligned_cols=97 Identities=13% Similarity=0.139 Sum_probs=59.6 Q ss_pred CCHHHC----CCHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHH Q ss_conf 995561----48799999999999779979999407-8861528999999999769947998078743366889789887 Q gi|254780901|r 70 PDPLIL----TDCDKAARRIVQAIYNSEKIMIFGDY-DVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEK 144 (600) Q Consensus 70 ~dP~~l----~dm~~A~~ri~~ai~~~ekI~I~gDy-D~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~ 144 (600) .||.++ .+.+.....+.+.+....+|.+--.- |.+++-.-| +.|..++.++...||-- .+| .+++.+ T Consensus 27 TNPsll~k~~~~~~~~~~~i~~~~~~~~~vs~ev~~~~~~~mi~~A---~~l~~~~~ni~vKIP~t-~~g----~~a~~~ 98 (220) T 1l6w_A 27 TNPSIIAAGKKPLDVVLPQLHEAMGGQGRLFAQVMATTAEGMVNDA---LKLRSIIADIVVKVPVT-AEG----LAAIKM 98 (220) T ss_dssp CCHHHHHHHCSCHHHHHHHHHHHTTTCSEEEEECCCSSHHHHHHHH---HHHHHHSTTCEEEEECS-HHH----HHHHHH T ss_pred CCHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHH---HHHHHHCCCCEEEEECC-HHH----HHHHHH T ss_conf 4889998669999999999999809899689999737677789999---99997286758995062-757----899999 Q ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEE Q ss_conf 420268689996488762345555541798279 Q gi|254780901|r 145 FINEGAQLIITVDCGSTSYDALQYATNQGIDVI 177 (600) Q Consensus 145 ~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvI 177 (600) +.++|+++-+|. +-+..+.-.|.+.|.+.| T Consensus 99 L~~~Gi~vn~Ta---v~s~~Qa~~Aa~aga~yv 128 (220) T 1l6w_A 99 LKAEGIPTLGTA---VYGAAQGLLSALAGAEYV 128 (220) T ss_dssp HHHHTCCEEEEE---ECSHHHHHHHHHHTCSEE T ss_pred HHHCCCCEEEEC---CCCHHHHHHHHHCCCCEE T ss_conf 887393288400---187999999997255707 No 362 >8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A Probab=24.14 E-value=25 Score=12.93 Aligned_cols=68 Identities=10% Similarity=0.053 Sum_probs=40.2 Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCC-CHHHHHHHHHCCCCEEEECCCCC Q ss_conf 9999976994799807874336688978988742026868999648876-23455555417982799615447 Q gi|254780901|r 113 MRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGST-SYDALQYATNQGIDVIVIDHHQV 184 (600) Q Consensus 113 ~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~-~~e~i~~a~~~GidvIVtDHH~~ 184 (600) -++.+.+|.++...-++ -.+ -..+.++.+...+++-||..-...+ ..+.++.|++.||.|+..|.=.. T Consensus 25 ~~~a~~~g~~~i~~~~~-d~~---~~~~~i~~~i~~~vdgiIi~~~~~~~~~~~~~~a~~~giPvV~~d~~~~ 93 (306) T 8abp_A 25 DKAGKDLGFEVIKIAVP-DGE---KTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 93 (306) T ss_dssp HHHHHHHTEEEEEEECC-SHH---HHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCB T ss_pred HHHHHHCCCEEEEECCC-CHH---HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCC T ss_conf 99999739999997599-999---9999999999769998999468842249999999975997899971234 No 363 >3f6c_A Positive transcription regulator EVGA; structural genomics, , PSI-2, protein structure initiative; 1.45A {Escherichia coli k-12} Probab=23.94 E-value=26 Score=12.90 Aligned_cols=18 Identities=6% Similarity=0.255 Sum_probs=6.7 Q ss_pred CEEECCCCHHHHHHHHHH Q ss_conf 146422215889999999 Q gi|254780901|r 445 GLTVERVNFGRLCDFFQK 462 (600) Q Consensus 445 G~ti~~~~l~~f~~~l~~ 462 (600) ||-.|+...+++.+++.+ T Consensus 99 ~yl~Kp~~~~~L~~ai~~ 116 (134) T 3f6c_A 99 GFVSKKEGMNNIIAAIEA 116 (134) T ss_dssp EEEEGGGCTHHHHHHHHH T ss_pred EEEECCCCHHHHHHHHHH T ss_conf 999798999999999999 No 364 >1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A Probab=23.82 E-value=26 Score=12.89 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=14.0 Q ss_pred CHHHHHHHHHCCCCEEEECCCCCC Q ss_conf 234555554179827996154476 Q gi|254780901|r 162 SYDALQYATNQGIDVIVIDHHQVK 185 (600) Q Consensus 162 ~~e~i~~a~~~GidvIVtDHH~~~ 185 (600) ..++++.+.+...|+|++|-+.|. T Consensus 36 ~~~al~~l~~~~~dliilD~~mP~ 59 (155) T 1qkk_A 36 ATEALAGLSADFAGIVISDIRMPG 59 (155) T ss_dssp HHHHHHTCCTTCCSEEEEESCCSS T ss_pred HHHHHHHHHCCCCCEEECCCCCCC T ss_conf 999999853269877765457899 No 365 >1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A Probab=23.77 E-value=26 Score=12.88 Aligned_cols=24 Identities=4% Similarity=-0.045 Sum_probs=13.1 Q ss_pred HHHHHHHHH-HHHHCCCCEEEEECC Q ss_conf 528999999-999769947998078 Q gi|254780901|r 106 AASVALMMR-FLSHCSVNANMYIPD 129 (600) Q Consensus 106 itstail~~-~L~~~g~~v~~~IP~ 129 (600) -|=|-+=.+ +..++|+++.+.=|. T Consensus 57 STRTR~SFe~A~~~LGg~~i~l~~~ 81 (321) T 1oth_A 57 STRTRLSTETGFALLGGHPCFLTTQ 81 (321) T ss_dssp CSHHHHHHHHHHHHTTCEEEEEETT T ss_pred CCCHHHHHHHHHHHCCCCEEECCCC T ss_conf 7554999999999779977956742 No 366 >1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide mutase); acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A Probab=23.77 E-value=26 Score=12.88 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=34.2 Q ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE--CCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCH Q ss_conf 977997999940788615289999999997699479980--787433668897898874202686899964887623 Q gi|254780901|r 89 IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYI--PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSY 163 (600) Q Consensus 89 i~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~I--P~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~ 163 (600) ....-++.|+---+-|=-+.-- ..+.|+.||.+..+.| .||.-| .-.+.++.+.+.|++++|++ .|-+++ T Consensus 18 ~~~~P~V~IimGS~SD~~~~~~-a~~~L~~~gI~~e~~V~SAHRtp~---~l~~~~~~a~~~g~~ViIa~-AG~aa~ 89 (182) T 1u11_A 18 AASAPVVGIIMGSQSDWETMRH-ADALLTELEIPHETLIVSAHRTPD---RLADYARTAAERGLNVIIAG-AGGAAH 89 (182) T ss_dssp --CCCSEEEEESSGGGHHHHHH-HHHHHHHTTCCEEEEECCTTTCHH---HHHHHHHHTTTTTCCEEEEE-EESSCC T ss_pred CCCCCEEEEEECCHHHHHHHHH-HHHHHHHCCCCEEEEEEECCCCHH---HHHHHHHHHHHCCCEEEEEE-CCCCCC T ss_conf 6899969999486756999999-999999849965888883304858---89999999996698699993-378765 No 367 >2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A {Paenibacillus pabuli} PDB: 2jeq_A* Probab=23.63 E-value=26 Score=12.86 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=18.6 Q ss_pred HHHHHHHHCCCCEEEECCCCCCC Q ss_conf 45555541798279961544765 Q gi|254780901|r 164 DALQYATNQGIDVIVIDHHQVKS 186 (600) Q Consensus 164 e~i~~a~~~GidvIVtDHH~~~~ 186 (600) +.|+.|.+.||.|||+=||.... T Consensus 114 ~vv~~a~~~Gl~vildlH~~~~~ 136 (395) T 2jep_A 114 QVVDYAYNEGLYVIINIHGDGYN 136 (395) T ss_dssp HHHHHHHTTTCEEEECCCGGGCT T ss_pred HHHHHHHHCCCEEEEEECCCCCC T ss_conf 99999985899799996345666 No 368 >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Probab=23.57 E-value=26 Score=12.85 Aligned_cols=10 Identities=20% Similarity=0.172 Sum_probs=4.0 Q ss_pred HHHHHHHCCC Q ss_conf 9999996788 Q gi|254780901|r 43 VARVLVNRNV 52 (600) Q Consensus 43 ~a~iL~~Rgi 52 (600) +|..|..+|+ T Consensus 21 ~A~~La~~G~ 30 (399) T 2x3n_A 21 LAYLLGRQGH 30 (399) T ss_dssp HHHHHHHTTC T ss_pred HHHHHHHCCC T ss_conf 9999996899 No 369 >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Probab=23.50 E-value=26 Score=12.84 Aligned_cols=54 Identities=9% Similarity=0.207 Sum_probs=26.9 Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEE---CCCCHHHHHHHHHHHHHHHCCH Q ss_conf 98618888885303353011565322231464---2221588999999999862264 Q gi|254780901|r 417 EGFDIGKMVSFAVEEGILVKGGGHAMAAGLTV---ERVNFGRLCDFFQKFAHNIVPA 470 (600) Q Consensus 417 ~g~~l~~~l~~~~~~~ll~~~GGH~~AaG~ti---~~~~l~~f~~~l~~~~~~~~~~ 470 (600) .++|++++-+.+.++|....-==.+.|.=+++ ..+.+++|.+.|.+.+.+.... T Consensus 384 ~~~~~~dva~~L~~rGw~~~~~~~P~~ih~~v~~~~~~~~d~~l~dl~~~~~e~~~~ 440 (497) T 3mc6_A 384 KTLNIHELSDRLSKKGWHFNALQKPVALHMAFTRLSAHVVDEICDILRTTVQELKSE 440 (497) T ss_dssp TTTTHHHHHHHHHTTTCBCEECCSSCCEEEECCTTTTCTHHHHHHHHHHHHHHHTCC T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999999999987964545479984999984788899999999999999999837 No 370 >3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP} Probab=23.49 E-value=26 Score=12.84 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=30.2 Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCC Q ss_conf 99799994078861528999999999769947998078743366889789887420268689996488762 Q gi|254780901|r 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTS 162 (600) Q Consensus 92 ~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~ 162 (600) +.+|+|.= |--+...++...|+..|.++... .. -.++++.+.+..++++|. |.-... T Consensus 6 k~rILiVD----D~~~~~~~l~~~L~~~G~~v~~a-----~~----~~eAl~~l~~~~~dlvil-D~~mP~ 62 (140) T 3grc_A 6 RPRILICE----DDPDIARLLNLMLEKGGFDSDMV-----HS----AAQALEQVARRPYAAMTV-DLNLPD 62 (140) T ss_dssp CSEEEEEC----SCHHHHHHHHHHHHHTTCEEEEE-----CS----HHHHHHHHHHSCCSEEEE-CSCCSS T ss_pred CCEEEEEE----CCHHHHHHHHHHHHHCCCEEEEE-----CC----HHHHHHHHHCCCCCEEEE-CCCCCC T ss_conf 87799996----99999999999999879999998-----99----999999997189989985-366899 No 371 >1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A Probab=23.46 E-value=26 Score=12.84 Aligned_cols=51 Identities=12% Similarity=0.212 Sum_probs=36.1 Q ss_pred EEEEEECCCCCCHHHHHHCCCCCEEEEEEEEEEEEECCC-CEEEEEEEEEEECC Q ss_conf 999997787870123553069987999999766545781-10589999801113 Q gi|254780901|r 541 LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGS-KRCQLRVLDASPVE 593 (600) Q Consensus 541 i~aI~Fn~~~~~~~~~~~~~~g~~idii~~l~~N~~~G~-~s~QL~I~Di~p~e 593 (600) +++++|+-....+.+++ ..|..+-+.+.|....|++. ..+.|.+.+|+-.+ T Consensus 67 i~vv~~G~~Ae~~~~~l--~KG~~V~V~G~L~~rs~kng~~r~vl~a~~IefLd 118 (134) T 1v1q_A 67 MPVIVSGHENQAITHSI--TVGSRITVQGFISCHKAKNGLSKMVLHAEQIELID 118 (134) T ss_dssp EEEEEESTGGGGGGTTC--CTTCEEEEEEEEEEECTTTTSCEEEEEEEEEEETT T ss_pred EEEEEECHHHHHHHHHC--CCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEEEC T ss_conf 99999958999999753--78999999999573106489988999999999803 No 372 >2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, PSI-2, protein structure initiative; 2.00A {Desulfuromonas acetoxidans dsm 684} Probab=23.23 E-value=26 Score=12.81 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=25.3 Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCC Q ss_conf 997999940788615289999999997699479980787433668897898874202686899964887 Q gi|254780901|r 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGS 160 (600) Q Consensus 92 ~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi 160 (600) +-+|+|.= |--+...++...|+..|.+|... .+ ..++++.+.+..++||| +|.-. T Consensus 8 ~~rILiVD----D~~~~~~~l~~~L~~~G~~v~~a-----~~----g~eAl~~~~~~~pdlii-lD~~m 62 (147) T 2zay_A 8 WWRIMLVD----TQLPALAASISALSQEGFDIIQC-----GN----AIEAVPVAVKTHPHLII-TEANM 62 (147) T ss_dssp CEEEEEEC----TTGGGGHHHHHHHHHHTEEEEEE-----SS----HHHHHHHHHHHCCSEEE-EESCC T ss_pred CCEEEEEE----CCHHHHHHHHHHHHHCCCEEEEE-----CC----HHHHHHHHHHCCCCEEE-ECCCC T ss_conf 98899997----99999999999999879999998-----99----99999999837999999-85999 No 373 >3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Probab=23.20 E-value=26 Score=12.80 Aligned_cols=45 Identities=9% Similarity=0.236 Sum_probs=26.6 Q ss_pred HHHHHHHHH-CCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCC Q ss_conf 789887420-2686899964887623455555417982799615447655 Q gi|254780901|r 139 PSLMEKFIN-EGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSE 187 (600) Q Consensus 139 ~~~i~~~~~-~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~~~~~ 187 (600) ...+..+.+ .|.. ++++ .+..++++.+.+...|+|++|.++|.-. T Consensus 18 ~~~l~~~L~~~g~~-v~~a---~~~~~al~~~~~~~~dlvl~D~~mP~~~ 63 (394) T 3eq2_A 18 RESLAAYLEDSNFK-VLQA---LNGLQGLQIFESEQPDLVICDLRMPQID 63 (394) T ss_dssp HHHHHHHHHHTTEE-EEEC---SSHHHHHHHHHHSCCSEEEECCCSSSSC T ss_pred HHHHHHHHHHCCCE-EEEE---CCHHHHHHHHHCCCCCEEEEECCCCCCC T ss_conf 99999999978999-9998---9999999998638999999989789998 No 374 >3k4h_A Putative transcriptional regulator; structural genomics, protein structure initiative; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} Probab=23.18 E-value=26 Score=12.80 Aligned_cols=67 Identities=12% Similarity=0.024 Sum_probs=38.5 Q ss_pred HHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCC Q ss_conf 99997699479980787433668897898874202686899964887623455555417982799615447 Q gi|254780901|r 114 RFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQV 184 (600) Q Consensus 114 ~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~~ 184 (600) +.+++.|..+..+ +.+.. ...-...++.+...+++-||.+++... -+.++.+.+.|+.|++.|.... T Consensus 37 ~~~~~~gy~~~l~-~~~~~--~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l~~~~~pvV~~~~~~~ 103 (292) T 3k4h_A 37 SFAHVEGYALYMS-TGETE--EEIFNGVVKMVQGRQIGGIILLYSREN-DRIIQYLHEQNFPFVLIGKPYD 103 (292) T ss_dssp HHHHHTTCEEEEC-CCCSH--HHHHHHHHHHHHTTCCCEEEESCCBTT-CHHHHHHHHTTCCEEEESCCSS T ss_pred HHHHHCCCEEEEE-ECCCC--HHHHHHHHHHHHHCCCCEEEEECCCCC-HHHHHHHHHCCCCEEEECCCCC T ss_conf 9999869999998-28998--899999999998379878999716688-5899999974999899756568 No 375 >3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, alter splicing, cell junction, cell membrane, endoplasmic reticul glycoprotein; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 2wjw_A* 2wjx_A Probab=23.13 E-value=27 Score=12.79 Aligned_cols=38 Identities=8% Similarity=0.033 Sum_probs=23.8 Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEE Q ss_conf 88742026868999648876234555554179827996 Q gi|254780901|r 142 MEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVI 179 (600) Q Consensus 142 i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVt 179 (600) +.++.++|+..||-.-|-..+......+...++-+|-. T Consensus 53 ~~~l~~~~v~aiiGp~~s~~~~~~~~~~~~~~ip~is~ 90 (376) T 3hsy_A 53 FCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITP 90 (376) T ss_dssp HHHHHHTTCSEEEECCCTTTHHHHHHHHHHHTCEEEEC T ss_pred HHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCC T ss_conf 99998759869999998188999999986336643345 No 376 >3fem_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, synthase, biosynthetic protein, transferase; 3.02A {Saccharomyces cerevisiae} Probab=23.01 E-value=27 Score=12.77 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=50.3 Q ss_pred CCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCE--EEECCCCCCCCCCCCCHHHHHH Q ss_conf 89789887420268689996488762345555541798279961544765556725--6523788886433443047889 Q gi|254780901|r 137 PNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAY--ALVNPNRLDDLSGQGHLCAAGV 214 (600) Q Consensus 137 l~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~~~~~~p~a~--aivNP~~~~~~~p~~~l~gaGv 214 (600) -.+..|+++.+. +++=+..-|-|..+-|...+-++|+|.| |-- +-+.||+ -.||-+ +|--+..|||- T Consensus 61 sdp~~I~eI~~a-vsIPVMAK~RIGHf~EAqiLealgvD~I--DES---EVLtpAD~~~HI~K~----~F~vPFVCGar- 129 (297) T 3fem_A 61 SDPKMIKDIMNS-VSIPVMAKVRIGHFVEAQIIEALEVDYI--DES---EVLTPADWTHHIEKD----KFKVPFVCGAK- 129 (297) T ss_dssp CCHHHHHHHHTS-CSSCEEEEECTTCHHHHHHHHHHTCSEE--EEC---TTSCCSCSSCCCCGG----GCSSCEEEEES- T ss_pred CCHHHHHHHHHC-CCCCHHHCCCCCCHHHHHHHHHCCCCCC--CCC---CCCCCCCCCCCCCCC----CCCCCEEECCC- T ss_conf 887999999862-6552312343351999988987199976--410---257767601255310----37777441689- Q ss_pred HHHHHHHHHHH Q ss_conf 99999999997 Q gi|254780901|r 215 VFLVLVLIYRI 225 (600) Q Consensus 215 af~l~~al~~~ 225 (600) -|-.||+|. T Consensus 130 --nLGEAlRRI 138 (297) T 3fem_A 130 --DLGEALRRI 138 (297) T ss_dssp --SHHHHHHHH T ss_pred --CHHHHHHHH T ss_conf --739999988 No 377 >1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomerase; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A Probab=22.94 E-value=17 Score=14.34 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=15.2 Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHC Q ss_conf 979999407886152899999999976 Q gi|254780901|r 93 EKIMIFGDYDVDGAASVALMMRFLSHC 119 (600) Q Consensus 93 ekI~I~gDyD~DGitstail~~~L~~~ 119 (600) ++|.|.| -=|.-||+..|+-+-.. T Consensus 2 k~IGIiG---G~gp~at~~~~~~i~~~ 25 (228) T 1jfl_A 2 KTIGILG---GMGPLATAELFRRIVIK 25 (228) T ss_dssp CCEEEEE---CSSHHHHHHHHHHHHHT T ss_pred CEEEEEE---CCCHHHHHHHHHHHHHH T ss_conf 8899952---77979999999999999 No 378 >1xfi_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2G17340, center for eukaryotic structural genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1 PDB: 2q40_A Probab=22.78 E-value=27 Score=12.74 Aligned_cols=15 Identities=20% Similarity=0.204 Sum_probs=8.5 Q ss_pred ECHHHCCHHHHHHHH Q ss_conf 346897999999998 Q gi|254780901|r 483 LNASAVNIALIDMLE 497 (600) Q Consensus 483 l~~~~i~~~l~~~L~ 497 (600) ++++.++.+|.+.++ T Consensus 296 l~L~r~s~e~~~~~~ 310 (367) T 1xfi_A 296 IDLSRVSQELAYLSS 310 (367) T ss_dssp CCTTSBCHHHHHHHT T ss_pred CCHHHCCHHHHHHHH T ss_conf 694768999999984 No 379 >3ct6_A PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DHAM; mixed alpha beta structure, glycerol metabolism; 1.10A {Lactococcus lactis} SCOP: c.54.1.2 PDB: 3cr3_C* Probab=22.73 E-value=27 Score=12.73 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=24.0 Q ss_pred CCCCCCCHHHHHHHHHCC--CCEEEEECCCCCCHHHHHHHHH Q ss_conf 336688978988742026--8689996488762345555541 Q gi|254780901|r 132 VDGYGPNPSLMEKFINEG--AQLIITVDCGSTSYDALQYATN 171 (600) Q Consensus 132 ~eGYGl~~~~i~~~~~~g--~~LiItvD~Gi~~~e~i~~a~~ 171 (600) ..++|-+...|..++++. -.++|.+|.||+ .=..+.|-+ T Consensus 39 dg~iGTs~~~I~~AIe~~~~dgVlvl~DLGSA-~m~ae~a~e 79 (131) T 3ct6_A 39 NGEIGTSFDRVMNAIEENEADNLLTFFDLGSA-RMNLDLVSE 79 (131) T ss_dssp TSCSSCCHHHHHHHHHHSSCSEEEEEESSGGG-HHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHCCCCCEEEEEECCHH-HHHHHHHHH T ss_conf 89777799999999984489987999856658-989999998 No 380 >3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, structural genomics; 2.10A {Mycobacterium tuberculosis} Probab=22.67 E-value=27 Score=12.73 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=23.9 Q ss_pred HHCCCHHHHHHHHHHH-HHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC Q ss_conf 5614879999999999-9779979999407886152899999999976994 Q gi|254780901|r 73 LILTDCDKAARRIVQA-IYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN 122 (600) Q Consensus 73 ~~l~dm~~A~~ri~~a-i~~~ekI~I~gDyD~DGitstail~~~L~~~g~~ 122 (600) ..+++.++..+.+.+. |.++.+|+||+| .++ ..++-++-.|+.+|.+ T Consensus 91 ~~l~~~e~~~~~l~~lGI~~~~~VVvY~~--~~~-~~a~R~~w~L~~~G~~ 138 (318) T 3hzu_A 91 RDYINGEQFAELMDRKGIARDDTVVIYGD--KSN-WWAAYALWVFTLFGHA 138 (318) T ss_dssp SSBCCHHHHHHHHHHTTCCTTCEEEEECS--GGG-HHHHHHHHHHHHTTCS T ss_pred CCCCCHHHHHHHHHHCCCCCCCEEEEEEC--CCC-CHHHHHHHHHHHCCCC T ss_conf 78999999999988628878966999907--777-4788999999976997 No 381 >2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92, PSI-2; 2.10A {Neptuniibacter caesariensis} Probab=22.64 E-value=27 Score=12.72 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=13.4 Q ss_pred CHHHHHHHHHCCCCEEEECCCCCCCC Q ss_conf 23455555417982799615447655 Q gi|254780901|r 162 SYDALQYATNQGIDVIVIDHHQVKSE 187 (600) Q Consensus 162 ~~e~i~~a~~~GidvIVtDHH~~~~~ 187 (600) ..++++.+++.-.|+|++|-+.|... T Consensus 40 ~~~Al~~l~~~~~dliilD~~mp~~~ 65 (154) T 2rjn_A 40 PLDALEALKGTSVQLVISDMRMPEMG 65 (154) T ss_dssp HHHHHHHHTTSCCSEEEEESSCSSSC T ss_pred HHHHHHHHHCCCCCEEEECCCCCCCC T ss_conf 99999998628998899668888888 No 382 >3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} Probab=22.61 E-value=27 Score=12.72 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=23.8 Q ss_pred HHHHHCCCCEEEEE--CCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCH Q ss_conf 99997699479980--787433668897898874202686899964887623 Q gi|254780901|r 114 RFLSHCSVNANMYI--PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSY 163 (600) Q Consensus 114 ~~L~~~g~~v~~~I--P~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~ 163 (600) +.|+.+|.+...+| .||.-+ .-.+.++.+.++|++.+|++= |-+++ T Consensus 26 ~~L~~~gI~~e~~V~SAHRtp~---~l~~~~~~~~~~~~~ViIa~A-G~aa~ 73 (166) T 3oow_A 26 DILDNLGIGYECEVVSAHRTPD---KMFDYAETAKERGLKVIIAGA-GGAAH 73 (166) T ss_dssp HHHHHTTCEEEEEECCTTTCHH---HHHHHHHHTTTTTCCEEEEEE-CSSCC T ss_pred HHHHHCCCCEEEEEECCCCCHH---HHHHHHHHHHHCCCEEEEEEC-CCCCC T ss_conf 9999849945888881607989---999999999855974999805-77644 No 383 >1x0u_A Hypothetical methylmalonyl-COA decarboxylase alpha subunit; lyase; 2.20A {Sulfolobus tokodaii str} Probab=22.59 E-value=22 Score=13.50 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=28.7 Q ss_pred HHHHHHHHHHHHCCHHHCCCCEEEEEEECHHHCCHHHHHHHHHCCC Q ss_conf 9999999998622644337714760443468979999999985184 Q gi|254780901|r 456 LCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGP 501 (600) Q Consensus 456 f~~~l~~~~~~~~~~~~~~~~l~iD~el~~~~i~~~l~~~L~~leP 501 (600) .++...++.+.....-..-....+|..+++.+.-..++..|+.+.. T Consensus 462 ~~~~~~~~~~~~~~~~~aa~~g~iD~VIdP~~tR~~l~~~L~~~~~ 507 (522) T 1x0u_A 462 LKQRIAEYRKLFANPYWAAEKGLVDDVIEPKDTRRVIVAGLEMLKT 507 (522) T ss_dssp SHHHHHHHHHHHSSSHHHHHTTSSSEECCGGGHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHCCHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHH T ss_conf 9999999998757999998668857328879999999999999762 No 384 >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} Probab=22.53 E-value=27 Score=12.71 Aligned_cols=12 Identities=8% Similarity=0.091 Sum_probs=5.8 Q ss_pred HHHHHHCCCCEE Q ss_conf 999997699479 Q gi|254780901|r 113 MRFLSHCSVNAN 124 (600) Q Consensus 113 ~~~L~~~g~~v~ 124 (600) .++|...|++|. T Consensus 36 A~~l~~~G~~V~ 47 (491) T 2f00_A 36 AEVLANEGYQIS 47 (491) T ss_dssp HHHHHHTTCEEE T ss_pred HHHHHHCCCEEE T ss_conf 999996899399 No 385 >3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp} Probab=22.40 E-value=27 Score=12.69 Aligned_cols=44 Identities=23% Similarity=0.215 Sum_probs=26.8 Q ss_pred HHHHHHHHCCCCEEEEECCCCC---C----------------HHHHHHHHHCCCCEEEECCCCC Q ss_conf 8988742026868999648876---2----------------3455555417982799615447 Q gi|254780901|r 140 SLMEKFINEGAQLIITVDCGST---S----------------YDALQYATNQGIDVIVIDHHQV 184 (600) Q Consensus 140 ~~i~~~~~~g~~LiItvD~Gi~---~----------------~e~i~~a~~~GidvIVtDHH~~ 184 (600) ..++++.+++.. .|++|.|=. + ..-++..+..|+|+.+.=.|+. T Consensus 42 t~i~~~r~~~~~-~l~ldaGD~~~Gs~~~~~~~~~~~~~~~~~~~~~~~n~~g~Da~~~GNHEF 104 (339) T 3jyf_A 42 SLIEQARAEVKN-SVLVDNGDVIQGSPLGDYMAAKGLKEGDVHPVYKAMNTLNYAVGNLGNHEF 104 (339) T ss_dssp HHHHHHHHTCSC-EEEEECSCCSSSSHHHHHHHHHCCCTTCCCHHHHHHTTSCCSEEECCGGGG T ss_pred HHHHHHHHHCCC-EEEEEECCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHCCCCEEECCHHHH T ss_conf 999999976889-699984877888300876325311345531699999755988161124766 No 386 >2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics, protein structure initiative; 2.89A {Clostridium difficile 630} Probab=22.26 E-value=28 Score=12.67 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=34.1 Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH Q ss_conf 79979999407886152899999999976994799807874336688978988742026868999648876234555554 Q gi|254780901|r 91 NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYAT 170 (600) Q Consensus 91 ~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~ 170 (600) .+.||+|.= |-.+...++..+|+..|.+|... .. -.++++.+.+..++||| +|......+.++.++ T Consensus 3 ~~~kILiVD----Dd~~~~~~l~~~L~~~g~~v~~a-----~~----~~eal~~l~~~~~dlil-lD~~mP~~dG~el~~ 68 (136) T 2qzj_A 3 LQTKILIID----GDKDNCQKLKGFLEEKGISIDLA-----YN----CEEAIGKIFSNKYDLIF-LEIILSDGDGWTLCK 68 (136) T ss_dssp -CCEEEEEC----SCHHHHHHHHHHHHTTTCEEEEE-----SS----HHHHHHHHHHCCCSEEE-EESEETTEEHHHHHH T ss_pred CCCEEEEEE----CCHHHHHHHHHHHHHCCCEEEEE-----CC----HHHHHHHHHHCCCCEEE-ECCCCCCCCCHHHHH T ss_conf 677599998----99999999999999879999998-----99----99999988627999999-779998998607999 No 387 >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 Probab=22.20 E-value=17 Score=14.39 Aligned_cols=13 Identities=23% Similarity=0.514 Sum_probs=9.0 Q ss_pred CCCCCHHHHHHHH Q ss_conf 6887435789870 Q gi|254780901|r 274 QGNPGLKALIERV 286 (600) Q Consensus 274 ~~~~gl~~L~~~~ 286 (600) ...||++.+.+.+ T Consensus 153 Kt~Pg~r~l~k~A 165 (296) T 1qap_A 153 KTLPGLRTALKYA 165 (296) T ss_dssp CCCTTCHHHHHHH T ss_pred CCCCCHHHHHHHH T ss_conf 7563279999999 No 388 >1vdm_A Purine phosphoribosyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Pyrococcus horikoshii} SCOP: c.61.1.1 Probab=22.13 E-value=28 Score=12.65 Aligned_cols=98 Identities=11% Similarity=0.059 Sum_probs=47.5 Q ss_pred HCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE-ECCCCCCCCCCCHHHHHH---HHHCC Q ss_conf 61487999999999997799799994078861528999999999769947998-078743366889789887---42026 Q gi|254780901|r 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMY-IPDRIVDGYGPNPSLMEK---FINEG 149 (600) Q Consensus 74 ~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~-IP~R~~eGYGl~~~~i~~---~~~~g 149 (600) .+.++++++.+|.+.|...+.=.|.|= .-=|+.-+..|.+.|.... +.+. +-++-..+..-....+.. ..-.| T Consensus 7 s~~~i~~~i~~La~~i~~~~~d~IvgI-~rgG~~~a~~la~~L~~~~--~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~g 83 (153) T 1vdm_A 7 TWWQVDRAIFALAEKLREYKPDVIIGV-ARGGLIPAVRLSHILGDIP--LKVIDVKFYKGIDERGEKPVITIPIHGDLKD 83 (153) T ss_dssp CHHHHHHHHHHHHHHHHHHCCSEEEEE-TTTTHHHHHHHHHHTTSCC--EEEEEEECCCC--CCCSSCEEEECCCSCCBT T ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEE-CCCCHHHHHHHHHHHCCCC--EEEEEEEEECCCCCCCCCEEEECCCCCCCCC T ss_conf 799999999999999875599999998-8886899999999868975--2488653444742446740242024323589 Q ss_pred CCEEE---EECCCCCCHHHHHHHHHCCC Q ss_conf 86899---96488762345555541798 Q gi|254780901|r 150 AQLII---TVDCGSTSYDALQYATNQGI 174 (600) Q Consensus 150 ~~LiI---tvD~Gi~~~e~i~~a~~~Gi 174 (600) -+.+| .+|.|.|....++++++.|- T Consensus 84 k~VLiVDDv~~TG~Tl~~~~~~l~~~ga 111 (153) T 1vdm_A 84 KRVVIVDDVSDTGKTLEVVIEEVKKLGA 111 (153) T ss_dssp CEEEEEEEEESSCHHHHHHHHHHHTTTB T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHCCC T ss_conf 9899972531568479999999986599 No 389 >3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Probab=22.11 E-value=28 Score=12.65 Aligned_cols=98 Identities=13% Similarity=0.133 Sum_probs=54.8 Q ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEE--EEECCCCCCCCC-CCHHHHH-------------------H Q ss_conf 99977997999940788615289999999997699479--980787433668-8978988-------------------7 Q gi|254780901|r 87 QAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVNAN--MYIPDRIVDGYG-PNPSLME-------------------K 144 (600) Q Consensus 87 ~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~--~~IP~R~~eGYG-l~~~~i~-------------------~ 144 (600) .|+..=++|+|.-|..-+.-++.......-+.+++++. +.+++.-.+... +...... . T Consensus 2 ~~M~~~kkILV~~D~s~~~~~al~~A~~lA~~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (319) T 3olq_A 2 NAMEKYQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARY 81 (319) T ss_dssp ---CCSCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 85245793999976988899999999999998099799999974687533344570156899999999999999999987 Q ss_pred HHHCCCCEEEEEC-CCCCCHHHHHHHHHCCCCEEEECCCCC Q ss_conf 4202686899964-887623455555417982799615447 Q gi|254780901|r 145 FINEGAQLIITVD-CGSTSYDALQYATNQGIDVIVIDHHQV 184 (600) Q Consensus 145 ~~~~g~~LiItvD-~Gi~~~e~i~~a~~~GidvIVtDHH~~ 184 (600) +.+.+...-+.+- .|....+-++.+.+.+.|.||...|.. T Consensus 82 ~~~~~~~~~~~v~~~~~~~~~i~~~a~~~~~DLiV~G~~~~ 122 (319) T 3olq_A 82 YLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQH 122 (319) T ss_dssp HHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCEEEECCCCC T ss_conf 77549955899998688589999999965988897415687 No 390 >2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159} Probab=22.07 E-value=28 Score=12.64 Aligned_cols=53 Identities=23% Similarity=0.520 Sum_probs=28.3 Q ss_pred CCCEEEEECCCCCHHHH--HHHHHHHHHHCCCCEEEEECC-CCCCCCCCCHHHHHHHHHCC Q ss_conf 99799994078861528--999999999769947998078-74336688978988742026 Q gi|254780901|r 92 SEKIMIFGDYDVDGAAS--VALMMRFLSHCSVNANMYIPD-RIVDGYGPNPSLMEKFINEG 149 (600) Q Consensus 92 ~ekI~I~gDyD~DGits--tail~~~L~~~g~~v~~~IP~-R~~eGYGl~~~~i~~~~~~g 149 (600) ++|++... +| ||-.+ |.-+...|++.+....+|+.- +..+. +++.+.++.+.| T Consensus 105 ~~K~v~LT-FD-DGp~~~~t~~iL~~L~~~~v~ATFFv~G~~i~~~---~~~~~k~~~~~G 160 (311) T 2w3z_A 105 KQKLVFLT-FD-DGVDPNMTPKILDVLAQQHVHATFFLVGCNITDK---VKPILQRQITEG 160 (311) T ss_dssp -CCEEEEE-EE-EECCTTHHHHHHHHHHHTTCCCEEEECGGGCCGG---GHHHHHHHHHTT T ss_pred CCCEEEEE-EE-CCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHC---HHHHHHHHHHCC T ss_conf 88879997-71-7998331899999999859978998257434345---699999999749 No 391 >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase; 1.30A {Burkholderia SP} Probab=22.06 E-value=28 Score=12.64 Aligned_cols=20 Identities=5% Similarity=0.064 Sum_probs=11.6 Q ss_pred EEEEEECHHHCCHHHHHHHHH Q ss_conf 760443468979999999985 Q gi|254780901|r 478 KIDGVLNASAVNIALIDMLES 498 (600) Q Consensus 478 ~iD~el~~~~i~~~l~~~L~~ 498 (600) .++...+++++...+ +.++. T Consensus 301 ~i~~~~~l~~~~eA~-~~~~~ 320 (333) T 1wly_A 301 SVAKTFPLREAAAAH-KYMGG 320 (333) T ss_dssp CEEEEEEGGGHHHHH-HHHHH T ss_pred CEEEEEEHHHHHHHH-HHHHC T ss_conf 240798399999999-99976 No 392 >1i6p_A Carbonic anhydrase; metalloenzyme, zinc coordination, PH- dependent activity, MAD phasing, lyase; 2.00A {Escherichia coli} SCOP: c.53.2.1 PDB: 1i6o_A 1t75_A 2esf_A Probab=22.03 E-value=28 Score=12.63 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=7.1 Q ss_pred HCCCCEEEEECCC Q ss_conf 7799799994078 Q gi|254780901|r 90 YNSEKIMIFGDYD 102 (600) Q Consensus 90 ~~~ekI~I~gDyD 102 (600) .+.-+.+++|=-| T Consensus 32 gQ~P~~~vi~CsD 44 (220) T 1i6p_A 32 AQKPRFLWIGCSD 44 (220) T ss_dssp CCCCSEEEEEETT T ss_pred CCCCCEEEEEECC T ss_conf 8999559995437 No 393 >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA; 2.30A {Thermus thermophilus HB8} Probab=22.01 E-value=28 Score=12.63 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=8.9 Q ss_pred EEEEECHHHCCHHHHHHHHH Q ss_conf 60443468979999999985 Q gi|254780901|r 479 IDGVLNASAVNIALIDMLES 498 (600) Q Consensus 479 iD~el~~~~i~~~l~~~L~~ 498 (600) ++-..+++++... ++.++. T Consensus 313 i~~~~~l~~~~eA-~~~l~~ 331 (343) T 2eih_A 313 VGQVLPLEAAAEG-HRLLEE 331 (343) T ss_dssp EEEEEEGGGHHHH-HHHHHT T ss_pred EEEEEEHHHHHHH-HHHHHC T ss_conf 6489849999999-999976 No 394 >3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf} Probab=21.85 E-value=28 Score=12.61 Aligned_cols=135 Identities=17% Similarity=0.155 Sum_probs=54.9 Q ss_pred HHHHHHHHCCCH-HHHHHHHHCC-CCHHHHHHHCCC--CHHHCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCH Q ss_conf 999998819999-9999999678-897898866196--677718995561487999999999997799799994078861 Q gi|254780901|r 30 ALAITQKHAIPD-IVARVLVNRN-VSIDYAKDFLNP--SIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDG 105 (600) Q Consensus 30 ~~~l~~~~~~~~-~~a~iL~~Rg-i~~~~~~~fL~p--~l~~l~~dP~~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DG 105 (600) ...++++.|+|. .++++|-+++ ++++.-+.-+.. .+.+- |++ ++..+ +-++...|.++-....+. T Consensus 5 ikdIA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~a~~lgY~-pn~--------~a~~l--~~~~~~~I~~~~~~~~~~ 73 (330) T 3ctp_A 5 IREIAKRAGISIATVSRHLNNTGYVSEDAREKIQKVVDELNYT-PNA--------LARAM--FTKNSKTIGLMVPNISNP 73 (330) T ss_dssp ------------------------------------------------------------------CCEEEEEESCTTSH T ss_pred HHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC-CCH--------HHHHH--HCCCCCEEEEECCCCCCC T ss_conf 9999999896999999996897999999999999999995898-798--------88976--127872799971677885 Q ss_pred HHHH--HHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCC Q ss_conf 5289--99999999769947998078743366889789887420268689996488762345555541798279961544 Q gi|254780901|r 106 AASV--ALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 (600) Q Consensus 106 itst--ail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~ 183 (600) .... .-+.+.++..|..+..+-.+...+ .....+..........++..+.- ........++-+++.|... T Consensus 74 ~~~~~~~~i~~~~~~~g~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~vv~~~~~~ 145 (330) T 3ctp_A 74 FFNQMASVIEEYAKNKGYTLFLCNTDDDKE---KEKTYLEVLQSHRVAGIIASRSQ-----CEDEYANIDIPVVAFENHI 145 (330) T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHH---HHHHHHHHHHHTTCSEEEEETCC-----CSGGGTTCCSCEEEESSCC T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCHH---HHHHHHHHHHHCCCCCCCCCCCC-----CHHHCCCCCCEEEEECCCC T ss_conf 200456799999997799899962577778---88889998642110100123442-----0232034687089942667 No 395 >1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2 Probab=21.77 E-value=28 Score=12.60 Aligned_cols=73 Identities=11% Similarity=0.145 Sum_probs=35.0 Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCHHHHH----HHHHCCCCEEEEE Q ss_conf 99999999779979999407886152899999999976-994799807874336688978988----7420268689996 Q gi|254780901|r 82 ARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHC-SVNANMYIPDRIVDGYGPNPSLME----KFINEGAQLIITV 156 (600) Q Consensus 82 ~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~-g~~v~~~IP~R~~eGYGl~~~~i~----~~~~~g~~LiItv 156 (600) .+++.+.+.+..|++|..| -.-+..+-++-+....+ |.++..|- ... + -.+.+.++ .+.+.+++.||.+ T Consensus 40 l~~l~~~~~~~~r~llV~~--~~~~~~~g~~~~v~~~L~g~~v~~f~--~v~-~-~P~~~~v~~~~~~~r~~~~D~IIav 113 (408) T 1oj7_A 40 IAGLREQIPHDARVLITYG--GGSVKKTGVLDQVLDALKGMDVLEFG--GIE-P-NPAYETLMNAVKLVREQKVTFLLAV 113 (408) T ss_dssp GGGHHHHSCTTCEEEEEEC--SSHHHHHSHHHHHHHHTTTSEEEEEC--CCC-S-SCBHHHHHHHHHHHHHHTCCEEEEE T ss_pred HHHHHHHHHCCCCEEEEEC--CCHHHHCCHHHHHHHHHCCCCEEEEE--CCC-C-CCCHHHHHHHHHHHHHCCCCEEEEC T ss_conf 9999999867996899989--52787753999999982799179980--823-7-9899999999999975599889980 Q ss_pred CCCC Q ss_conf 4887 Q gi|254780901|r 157 DCGS 160 (600) Q Consensus 157 D~Gi 160 (600) -=|+ T Consensus 114 GGGS 117 (408) T 1oj7_A 114 GGGS 117 (408) T ss_dssp ESHH T ss_pred CCCC T ss_conf 8963 No 396 >1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y Probab=21.71 E-value=28 Score=12.59 Aligned_cols=15 Identities=0% Similarity=0.177 Sum_probs=5.8 Q ss_pred HHHHHHHHHHCCCCE Q ss_conf 999999999769947 Q gi|254780901|r 109 VALMMRFLSHCSVNA 123 (600) Q Consensus 109 tail~~~L~~~g~~v 123 (600) ...+...|+..|.++ T Consensus 15 r~~l~~~L~~~g~~v 29 (120) T 1tmy_A 15 RMMLKDIITKAGYEV 29 (120) T ss_dssp HHHHHHHHHHTTCEE T ss_pred HHHHHHHHHHCCCEE T ss_conf 999999999879989 No 397 >1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Probab=21.69 E-value=28 Score=12.59 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=16.2 Q ss_pred EECCCCCCHHHHHHHHHCCCCEEEECCCC Q ss_conf 96488762345555541798279961544 Q gi|254780901|r 155 TVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 (600) Q Consensus 155 tvD~Gi~~~e~i~~a~~~GidvIVtDHH~ 183 (600) .+-.|....+-++++++.++|+||+=.|. T Consensus 91 ~v~~G~~~~~I~~~a~e~~~DlIVmG~~~ 119 (138) T 1q77_A 91 EYRIGPLSEEVKKFVEGKGYELVVWACYP 119 (138) T ss_dssp EEECSCHHHHHHHHHTTSCCSEEEECSCC T ss_pred ECCCCCHHHHHHHHHHHCCCCEEEECCCC T ss_conf 31369989999999997499999992899 No 398 >1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M* Probab=21.55 E-value=28 Score=12.56 Aligned_cols=104 Identities=20% Similarity=0.193 Sum_probs=52.2 Q ss_pred HHHHHHHHHH----HHHC--CCCEEE-EECCCCCHH--HHHHHHHHHHHHCCCCEEEEECC---C------------CCC Q ss_conf 7999999999----9977--997999-940788615--28999999999769947998078---7------------433 Q gi|254780901|r 78 CDKAARRIVQ----AIYN--SEKIMI-FGDYDVDGA--ASVALMMRFLSHCSVNANMYIPD---R------------IVD 133 (600) Q Consensus 78 m~~A~~ri~~----ai~~--~ekI~I-~gDyD~DGi--tstail~~~L~~~g~~v~~~IP~---R------------~~e 133 (600) =|+|.+.|.+ .+++ .+.|+. .|.+..-|. .....+++|++.+|.....+-+. + ..- T Consensus 114 WDEAl~~iA~kl~~i~~~~Gp~si~~~~~~~~~~g~~~~~~~~~~rf~~~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 193 (875) T 1ti6_A 114 WDEATDIVVAEINRIKHAYGPSAILSTPSSHHMWGNVGYRHSTYFRFMNMMGFTYADHNPDSWEGWHWGGMHMWGFSWRL 193 (875) T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGEEEECCSCCCSCTTTSTTTHHHHHHHHHCCEEEECCCTTTHHHHHTHHHHHCCGGGT T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999999999769874998557444445056799999999997296425799750678887776664210003 Q ss_pred CCCCCHHHHHHHHHCCCCEEEEECCCCCCH------------HHHHHHHHCCCCEEEECCCCC Q ss_conf 668897898874202686899964887623------------455555417982799615447 Q gi|254780901|r 134 GYGPNPSLMEKFINEGAQLIITVDCGSTSY------------DALQYATNQGIDVIVIDHHQV 184 (600) Q Consensus 134 GYGl~~~~i~~~~~~g~~LiItvD~Gi~~~------------e~i~~a~~~GidvIVtDHH~~ 184 (600) |++......+.-.+ .+++||.. |++.. .....+++.|..+||+|=... T Consensus 194 G~~~~~~~~~~d~~-~a~~il~~--G~Np~~~~~~~~~~~~~~~~~~~k~~GaKlVvVDPr~s 253 (875) T 1ti6_A 194 GNPEQYDLLEDGLK-HAEMIVFW--SSDPETNSGIYAGFESNIRRQWLKDLGVDFVFIDPHMN 253 (875) T ss_dssp TCCCCTTHHHHHHH-HCSEEEEE--SCCHHHHCSSSCTTTTHHHHHHHHHTTCEEEEECSBCC T ss_pred CCCCCCCCHHHHHH-CCCEEEEE--ECCCHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC T ss_conf 67866787054663-57579998--04802307764226678999998738987999878888 No 399 >2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA; 1.70A {Aquifex aeolicus VF5} PDB: 2qq1_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A Probab=21.37 E-value=29 Score=12.54 Aligned_cols=46 Identities=20% Similarity=0.246 Sum_probs=28.4 Q ss_pred HHHHHHHHHHHHCCC---CEEEE-ECCCCCCCCCCCHHHHHH-HHHCCCCEEEEE Q ss_conf 289999999997699---47998-078743366889789887-420268689996 Q gi|254780901|r 107 ASVALMMRFLSHCSV---NANMY-IPDRIVDGYGPNPSLMEK-FINEGAQLIITV 156 (600) Q Consensus 107 tstail~~~L~~~g~---~v~~~-IP~R~~eGYGl~~~~i~~-~~~~g~~LiItv 156 (600) +|...+.+.|+..|. .+.|. +|+-..+ +.. .+.+ +.+.++++|||. T Consensus 25 ~sG~~l~e~L~~~g~~~~~v~~~iVpDd~~~---I~~-~l~~~~~~~~~dlIiTT 75 (178) T 2pbq_A 25 ISGKAIIDYLKDVIITPFEVEYRVIPDERDL---IEK-TLIELADEKGCSLILTT 75 (178) T ss_dssp HHHHHHHHHHHHHBCSCCEEEEEEECSCHHH---HHH-HHHHHHHTSCCSEEEEE T ss_pred CCHHHHHHHHHHHCCCCEEEEEEEECCCHHH---HHH-HHHHHHHCCCCCEEEEE T ss_conf 7689999999983788718889996886799---999-99999873798389973 No 400 >3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis; 2.10A {Gloeobacter violaceus pcc 7421} Probab=21.35 E-value=29 Score=12.53 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=17.2 Q ss_pred HCCCCEEEECCCCCCCCCC-----CCEEEECCCCCCCCCCCCCHHH Q ss_conf 1798279961544765556-----7256523788886433443047 Q gi|254780901|r 171 NQGIDVIVIDHHQVKSEEI-----PAYALVNPNRLDDLSGQGHLCA 211 (600) Q Consensus 171 ~~GidvIVtDHH~~~~~~p-----~a~aivNP~~~~~~~p~~~l~g 211 (600) +.-.|+||.-||... ... ..+.|||- ..+...|...|+- T Consensus 101 s~~~d~iv~R~~~~~-~~~~~a~~s~vPVINa-g~~~~HPtQaLlD 144 (323) T 3gd5_A 101 GRYVDGLAIRTFAQT-ELEEYAHYAGIPVINA-LTDHEHPCQVVAD 144 (323) T ss_dssp TTTCSEEEEECSSHH-HHHHHHHHHCSCEEEE-ECSSCCHHHHHHH T ss_pred HCCCHHHHEECCHHH-HHHHHHHCCCCCEEEC-CCCCCCHHHHHHH T ss_conf 522114321000056-7999852179776858-8874168999988 No 401 >1se7_A HOT, homologue of the theta subunit of DNA polymerase III; E. coli bacteriophage P1, homologue of theta, E. coli DNA polymerase III; NMR {Enterobacteria phage P1} SCOP: a.237.1.1 PDB: 2ido_B* Probab=21.26 E-value=26 Score=12.80 Aligned_cols=11 Identities=36% Similarity=0.552 Sum_probs=7.7 Q ss_pred CCHHHHHHHHH Q ss_conf 43047889999 Q gi|254780901|r 207 GHLCAAGVVFL 217 (600) Q Consensus 207 ~~l~gaGvaf~ 217 (600) -+|+++||||+ T Consensus 19 VDLaASgVafk 29 (83) T 1se7_A 19 VDLAASGVAYK 29 (83) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 88998665999 No 402 >2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens} Probab=21.17 E-value=29 Score=12.51 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=20.5 Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH Q ss_conf 5561487999999999997799799994078861528 Q gi|254780901|r 72 PLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAAS 108 (600) Q Consensus 72 P~~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGits 108 (600) ...+..++++++.|.++++++++|+|+. ..|++= T Consensus 63 ~~l~~~~~~~~~fI~~~~~~g~~VLVHC---~~G~sR 96 (211) T 2g6z_A 63 ADISSHFQEAIDFIDCVREKGGKVLVHS---EAGISR 96 (211) T ss_dssp SCCGGGHHHHHHHHHHHHHTTCCEEEEE---SSSSSH T ss_pred CHHHHHHHHHHHHHHHHHHCCCEEEEEC---CCCCCC T ss_conf 4399999999998899986498799983---888875 No 403 >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* Probab=21.03 E-value=29 Score=12.49 Aligned_cols=103 Identities=16% Similarity=0.183 Sum_probs=69.4 Q ss_pred HCCCHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCE Q ss_conf 61487999999999997-79979999407886152899999999976994799807874336688978988742026868 Q gi|254780901|r 74 ILTDCDKAARRIVQAIY-NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQL 152 (600) Q Consensus 74 ~l~dm~~A~~ri~~ai~-~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~L 152 (600) ....-..|......++. +...-+|...|-.-+... ++...|+++.++=.+ .+.+.++.+.+++.....++. T Consensus 76 ~~~SGT~Al~lal~~l~~~~gDeVi~p~~~~~~~~~------~i~~~g~~~v~~di~--~~~~~id~~~le~~i~~ktka 147 (391) T 3dr4_A 76 ACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASAN------SVTYCGATPVLVDND--PRTFNLDAAKLEALITPRTKA 147 (391) T ss_dssp EESSHHHHHHHHHHHHTCCTTCEEEEESSSCTHHHH------HHHHTTCEEEEECBC--TTTCSBCGGGSGGGCCTTEEE T ss_pred EECCHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHH------HHHHCCCEEEEECCC--CCCCCCCHHHHHHHCCCCCEE T ss_conf 957899999999998499981999989860232107------887579889983167--633589999999746899829 Q ss_pred EEEECC-CC-CCHHHH-HHHHHCCCCEEEECCCCC Q ss_conf 999648-87-623455-555417982799615447 Q gi|254780901|r 153 IITVDC-GS-TSYDAL-QYATNQGIDVIVIDHHQV 184 (600) Q Consensus 153 iItvD~-Gi-~~~e~i-~~a~~~GidvIVtDHH~~ 184 (600) ||.|.. |. .+.++| +.|++.|+-||+=-=|.. T Consensus 148 Ii~vh~~G~~~di~~I~~ia~k~~i~lIeD~A~a~ 182 (391) T 3dr4_A 148 IMPVHLYGQICDMDPILEVARRHNLLVIEDAAEAV 182 (391) T ss_dssp ECCBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCT T ss_pred EEEECCCCCCCCHHHHHHHHHHCCCEEEEECHHHH T ss_conf 99969877700899999999984998999882231 No 404 >1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1 Probab=21.01 E-value=29 Score=12.48 Aligned_cols=12 Identities=25% Similarity=0.086 Sum_probs=8.9 Q ss_pred HHHHHHHHHHHH Q ss_conf 222789988420 Q gi|254780901|r 384 GLLAARLKEKFG 395 (600) Q Consensus 384 GIVAsrL~e~y~ 395 (600) |--+-|..|... T Consensus 257 GTT~~RaLEs~~ 268 (345) T 1wdi_A 257 GTTVVRALESAY 268 (345) T ss_dssp SHHHHHHHHHTE T ss_pred ECCHHHHHHHHH T ss_conf 240899999999 No 405 >2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specificity phosphatase; 1.88A {Homo sapiens} Probab=20.99 E-value=29 Score=12.48 Aligned_cols=13 Identities=31% Similarity=0.422 Sum_probs=5.5 Q ss_pred HHHHHCCCCEEEE Q ss_conf 5554179827996 Q gi|254780901|r 167 QYATNQGIDVIVI 179 (600) Q Consensus 167 ~~a~~~GidvIVt 179 (600) +.++++||..||. T Consensus 45 ~~L~~~gIt~Iln 57 (190) T 2wgp_A 45 HLLQARGITCIVN 57 (190) T ss_dssp HHHHHTTCCEEEE T ss_pred HHHHHCCCCEEEE T ss_conf 9999879978997 No 406 >1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A Probab=20.96 E-value=29 Score=12.48 Aligned_cols=16 Identities=0% Similarity=-0.091 Sum_probs=6.8 Q ss_pred HHHHHHHHHHCCCCEE Q ss_conf 9999999997699479 Q gi|254780901|r 109 VALMMRFLSHCSVNAN 124 (600) Q Consensus 109 tail~~~L~~~g~~v~ 124 (600) ..++...|+..|.++. T Consensus 16 ~~~l~~~L~~~g~~v~ 31 (123) T 1xhf_A 16 RNTLKSIFEAEGYDVF 31 (123) T ss_dssp HHHHHHHHHTTTCEEE T ss_pred HHHHHHHHHHCCCEEE T ss_conf 9999999998799999 No 407 >1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbonic dehydratase); Zn protein, structural proteomics in europe, spine; 1.75A {Mycobacterium tuberculosis H37RV} PDB: 2a5v_A Probab=20.91 E-value=29 Score=12.47 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=6.5 Q ss_pred HHHHH-HHCCCCEEEECCC Q ss_conf 55555-4179827996154 Q gi|254780901|r 165 ALQYA-TNQGIDVIVIDHH 182 (600) Q Consensus 165 ~i~~a-~~~GidvIVtDHH 182 (600) .++|| ..+|+..||.=+| T Consensus 94 sleyAv~~L~v~~IvV~GH 112 (215) T 1ym3_A 94 SIEYAVTVLNVPLIVVLGH 112 (215) T ss_dssp HHHHHHHTSCCCEEEEEEE T ss_pred EEEEEHHCCCCCEEEEECC T ss_conf 1154011068678999579 No 408 >1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A Probab=20.84 E-value=29 Score=12.46 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=20.8 Q ss_pred CCCEEEEECCC---C-----CHHHHHHHH---------HHHHHHHHCEEEEEE Q ss_conf 47502620578---5-----812222227---------899884201079988 Q gi|254780901|r 367 QASVIVVEGDR---W-----HPGIVGLLA---------ARLKEKFGRPSFAIS 402 (600) Q Consensus 367 ~~~~ivv~~~~---w-----h~GViGIVA---------srL~e~y~kP~iv~s 402 (600) ..++|+|+.+= | ...|.|||. +=|+..++.|++|-. T Consensus 153 ~~~~ILVa~~LtPsd~~~l~~~~v~Givt~~GG~tSH~AIlARslgIPavvG~ 205 (258) T 1zym_A 153 QDEVILVAADLTPSETAQLNLKKVLGFITDAGGRTSHTSIMARSLELPAIVGT 205 (258) T ss_dssp CSCEEEECSCCCHHHHHHSCGGGEEEEECSCCCSSSHHHHHHHHHTCCEECCC T ss_pred CCCEEEEECCCCHHHHHHCCHHHEEEEEECCCCCCCHHHHHHHHCCCCEEEEC T ss_conf 99879997079857775436004267886169977699999998499879842 No 409 >3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} Probab=20.82 E-value=29 Score=12.46 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=35.3 Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCC---CCHHHHH Q ss_conf 7997999940788615289999999997699479980787433668897898874202686899964887---6234555 Q gi|254780901|r 91 NSEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGS---TSYDALQ 167 (600) Q Consensus 91 ~~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi---~~~e~i~ 167 (600) .++||+|.=| | -+-..++...|+..|.++... .+| .++++.+.+..++++| +|... +..+-++ T Consensus 6 ~g~kILiVDD---~-~~~r~~l~~~L~~~g~~v~~a-----~~g----~~Al~~l~~~~~dlvi-~D~~mP~~dG~~~~~ 71 (130) T 3eod_A 6 VGKQILIVED---E-QVFRSLLDSWFSSLGATTVLA-----ADG----VDALELLGGFTPDLMI-CDIAMPRMNGLKLLE 71 (130) T ss_dssp TTCEEEEECS---C-HHHHHHHHHHHHHTTCEEEEE-----SCH----HHHHHHHTTCCCSEEE-ECCC-----CHHHHH T ss_pred CCCEEEEEEC---C-HHHHHHHHHHHHHCCCEEEEE-----CCH----HHHHHHHHCCCCCEEH-HHHCCCCCCHHHHHH T ss_conf 9998999969---8-999999999999889999998-----999----9999998528988745-742179998999999 Q ss_pred HHHHC Q ss_conf 55417 Q gi|254780901|r 168 YATNQ 172 (600) Q Consensus 168 ~a~~~ 172 (600) ..++. T Consensus 72 ~ir~~ 76 (130) T 3eod_A 72 HIRNR 76 (130) T ss_dssp HHHHT T ss_pred HHHHH T ss_conf 99960 No 410 >2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A Probab=20.74 E-value=29 Score=12.44 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=16.1 Q ss_pred EEEEECCCCCCHHHHHHHHH-----CCCCEEEECCCCC Q ss_conf 89996488762345555541-----7982799615447 Q gi|254780901|r 152 LIITVDCGSTSYDALQYATN-----QGIDVIVIDHHQV 184 (600) Q Consensus 152 LiItvD~Gi~~~e~i~~a~~-----~GidvIVtDHH~~ 184 (600) .||| .|+-.-++-+++-+ ...-||+|-=..| T Consensus 105 vVVt--HGTDTleeTA~~L~~~l~~~~kPVVlTGAmrp 140 (358) T 2him_A 105 FVIL--HGTDTMAYTASALSFMLENLGKPVIVTGSQIP 140 (358) T ss_dssp EEEE--CCSTTHHHHHHHHHHHEETCCSCEEEECCSSC T ss_pred EEEE--CCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC T ss_conf 8997--58636999999999986478985699688888 No 411 >3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus} Probab=20.74 E-value=29 Score=12.44 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=19.0 Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCEEEE Q ss_conf 50262057858122222278998842010799 Q gi|254780901|r 369 SVIVVEGDRWHPGIVGLLAARLKEKFGRPSFA 400 (600) Q Consensus 369 ~~ivv~~~~wh~GViGIVAsrL~e~y~kP~iv 400 (600) ..+++.+| ++.+--|+ .+..+++.|+.| T Consensus 114 d~vy~CGP---~~Mm~~v~-~~l~~~Gvp~~v 141 (158) T 3lrx_A 114 DLVFMVGP---VGDQKQVF-EVVKEYGVPMKV 141 (158) T ss_dssp SEEEEESC---HHHHHHHH-HHHGGGTCCEEE T ss_pred CEEEEECC---HHHHHHHH-HHHHHCCCCEEE T ss_conf 79999999---99999999-999986998999 No 412 >3dah_A Ribose-phosphate pyrophosphokinase; seattle structural genomics center for infectious disease, ssgcid, cytoplasm, magnesium; HET: AMP; 2.30A {Burkholderia pseudomallei 1710B} Probab=20.67 E-value=29 Score=12.43 Aligned_cols=73 Identities=18% Similarity=0.307 Sum_probs=48.8 Q ss_pred CCCEEEEEC-CC--CCHHHHHHHHHHHHHHCCC-CEEEEEC-------CC-CCCCC-CCCHHHHHHHHHC-CCCEEEEEC Q ss_conf 997999940-78--8615289999999997699-4799807-------87-43366-8897898874202-686899964 Q gi|254780901|r 92 SEKIMIFGD-YD--VDGAASVALMMRFLSHCSV-NANMYIP-------DR-IVDGY-GPNPSLMEKFINE-GAQLIITVD 157 (600) Q Consensus 92 ~ekI~I~gD-yD--~DGitstail~~~L~~~g~-~v~~~IP-------~R-~~eGY-Gl~~~~i~~~~~~-g~~LiItvD 157 (600) ++.+.|... +. -|-+.-..++..+++..|+ ++...+| +| +..|- -++...+.++.+. |++-+||+| T Consensus 54 g~dV~iiqs~~~~~nd~lmeLll~~~a~r~~gA~~itlViPYl~YsRQDr~~~~g~~~isa~~va~ll~~~g~d~vitvD 133 (319) T 3dah_A 54 GKDVFVLQSTCAPTNDNLMELMIMVDALKRASAGRITAAIPYFGYARQDRRPRSARVAISAKVVANMLEIAGVERIITMD 133 (319) T ss_dssp TCEEEEECCCCSSHHHHHHHHHHHHHHHHHTTBSEEEEEESSCTTTTCCSCCTTCCCCCHHHHHHHHHHHHTCCEEEEES T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC T ss_conf 98089993799686378999999999998749772588714662322032346774306799998444005885599957 Q ss_pred CCCCCHH Q ss_conf 8876234 Q gi|254780901|r 158 CGSTSYD 164 (600) Q Consensus 158 ~Gi~~~e 164 (600) --....+ T Consensus 134 lH~~~i~ 140 (319) T 3dah_A 134 LHADQIQ 140 (319) T ss_dssp CSCGGGG T ss_pred CCHHHHH T ss_conf 7848784 No 413 >2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus} Probab=20.65 E-value=29 Score=12.43 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=8.6 Q ss_pred CCCCCCCCCCCCCCC Q ss_conf 047887341157888 Q gi|254780901|r 11 CSISGFRWVSLLGQE 25 (600) Q Consensus 11 ~s~~~~rW~~~~~~~ 25 (600) |.++|-.|.....++ T Consensus 22 C~~~g~~~~~~~I~d 36 (460) T 2xdq_A 22 CPISCVAWLYQKIED 36 (460) T ss_dssp CGGGHHHHHHHHSTT T ss_pred CCHHHHHHHHHHCCC T ss_conf 547859999840388 No 414 >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} Probab=20.60 E-value=19 Score=13.97 Aligned_cols=13 Identities=31% Similarity=0.506 Sum_probs=9.0 Q ss_pred CCCCCHHHHHHHH Q ss_conf 6887435789870 Q gi|254780901|r 274 QGNPGLKALIERV 286 (600) Q Consensus 274 ~~~~gl~~L~~~~ 286 (600) ...||++.|.+.+ T Consensus 152 KT~PGlR~l~k~A 164 (300) T 3l0g_A 152 KTTPGLRMLDKYS 164 (300) T ss_dssp CCCTTCHHHHHHH T ss_pred CCCCCHHHHHHHH T ss_conf 3474279999999 No 415 >1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1 Probab=20.60 E-value=30 Score=12.42 Aligned_cols=33 Identities=15% Similarity=0.417 Sum_probs=24.3 Q ss_pred CCHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECC Q ss_conf 6234555554179827996154476555672565237 Q gi|254780901|r 161 TSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNP 197 (600) Q Consensus 161 ~~~e~i~~a~~~GidvIVtDHH~~~~~~p~a~aivNP 197 (600) +-.+++..|.+.|+|++.++ ++..||.+-|++. T Consensus 30 ~~~eAl~~A~~~~lDLV~vs----~~~~PPVcKi~dy 62 (78) T 1tif_A 30 SKQEALEIAARRNLDLVLVA----PNAKPPVCRIMDY 62 (78) T ss_dssp EHHHHHHHHHHTTCEEEEEE----TTSSSCEEEEECH T ss_pred CHHHHHHHHHHCCCCEEEEC----CCCCCCEEEEECC T ss_conf 29999999998699789988----9999988999751 No 416 >2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans} Probab=20.46 E-value=30 Score=12.40 Aligned_cols=87 Identities=8% Similarity=0.074 Sum_probs=47.2 Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHH-HHHC-CCCEEEECCCCCCCCCCC Q ss_conf 99999769947998078743366889789887420268689996488762345555-5417-982799615447655567 Q gi|254780901|r 113 MRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQY-ATNQ-GIDVIVIDHHQVKSEEIP 190 (600) Q Consensus 113 ~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~-a~~~-GidvIVtDHH~~~~~~p~ 190 (600) .++-+.+|.++.+.=+.. .+ ---...++.+.++|++|||++ |..-.+.+.. |++. .+..+++|-... ++ T Consensus 30 ~~~~~~~gi~~~~~e~~~-~~--~~~~~~i~~~a~~g~dlIi~~--g~~~~~~~~~vA~~~Pd~~F~~~d~~~~----~~ 100 (296) T 2hqb_A 30 LNIHSNLDVDVVLEEGVN-SE--QKAHRRIKELVDGGVNLIFGH--GHAFAEYFSTIHNQYPDVHFVSFNGEVK----GE 100 (296) T ss_dssp HHHHHHSCCEEEEECCCC-SH--HHHHHHHHHHHHTTCCEEEEC--STHHHHHHHTTTTSCTTSEEEEESCCCC----SS T ss_pred HHHHHHHCCEEEEEECCC-CH--HHHHHHHHHHHHCCCCEEEEC--CCCCHHHHHHHHHHCCCCEEEEECCCCC----CC T ss_conf 999998698699995799-88--999999999998799999982--7422269999999889988999426545----78 Q ss_pred CEEEECCCCCCCCCCCCCHHHH Q ss_conf 2565237888864334430478 Q gi|254780901|r 191 AYALVNPNRLDDLSGQGHLCAA 212 (600) Q Consensus 191 a~aivNP~~~~~~~p~~~l~ga 212 (600) .+.-+..+ .+.-.+|+|. T Consensus 101 Nv~~~~f~----~~e~~yLaG~ 118 (296) T 2hqb_A 101 NITSLHFE----GYAMGYFGGM 118 (296) T ss_dssp SEEEEEEC----CHHHHHHHHH T ss_pred CEEEEEEC----CHHCCHHHHH T ss_conf 64699953----0120018999 No 417 >2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A* Probab=20.44 E-value=30 Score=12.40 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=9.0 Q ss_pred HHHHHHHCEEEEEE Q ss_conf 99884201079988 Q gi|254780901|r 389 RLKEKFGRPSFAIS 402 (600) Q Consensus 389 rL~e~y~kP~iv~s 402 (600) -++...++|++++- T Consensus 266 HlAaa~~~p~i~lf 279 (326) T 2gt1_A 266 HLTAALDRPNITVY 279 (326) T ss_dssp HHHHHTTCCEEEEE T ss_pred HHHHHCCCCEEEEE T ss_conf 99998699989998 No 418 >3e58_A Putative beta-phosphoglucomutase; structural genomics, PSI-2, protein structure initiative; 1.86A {Streptococcus thermophilus lmg 18311} Probab=20.43 E-value=30 Score=12.40 Aligned_cols=110 Identities=14% Similarity=0.197 Sum_probs=56.4 Q ss_pred HCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCCCCCCCCHHHHHHHHHC-CC Q ss_conf 6148799999999999779979999407886152899999999976994--79980787433668897898874202-68 Q gi|254780901|r 74 ILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCSVN--ANMYIPDRIVDGYGPNPSLMEKFINE-GA 150 (600) Q Consensus 74 ~l~dm~~A~~ri~~ai~~~ekI~I~gDyD~DGitstail~~~L~~~g~~--v~~~IP~R~~eGYGl~~~~i~~~~~~-g~ 150 (600) .++++.++.+++ -+++-+++|..- ++...+...|+.+|.. +..++-......+-.+++.++.+.+. |. T Consensus 90 ~~~~~~~~L~~l---~~~g~~~~i~Tn------~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~Kp~~~~~~~~~~~~g~ 160 (214) T 3e58_A 90 IFPDVLKVLNEV---KSQGLEIGLASS------SVKADIFRALEENRLQGFFDIVLSGEEFKESKPNPEIYLTALKQLNV 160 (214) T ss_dssp BCTTHHHHHHHH---HHTTCEEEEEES------SCHHHHHHHHHHTTCGGGCSEEEEGGGCSSCTTSSHHHHHHHHHHTC T ss_pred CCCCHHHHHHHH---HHCCCEEEEECC------CCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCC T ss_conf 572799999999---987972687538------73677777877631233146786143356667656999999998299 Q ss_pred --CEEEEECCCCCCHHHHHHHHHCCCCEEEE-CCCCCCCCCCCCEEEEC Q ss_conf --68999648876234555554179827996-15447655567256523 Q gi|254780901|r 151 --QLIITVDCGSTSYDALQYATNQGIDVIVI-DHHQVKSEEIPAYALVN 196 (600) Q Consensus 151 --~LiItvD~Gi~~~e~i~~a~~~GidvIVt-DHH~~~~~~p~a~aivN 196 (600) +=.+.|+... ..+..|+..|+.+|.. +.+..... ..+..+|+ T Consensus 161 ~~~~~l~VgD~~---~Di~aA~~aG~~~i~v~~~~~~~~~-~~~~~vi~ 205 (214) T 3e58_A 161 QASRALIIEDSE---KGIAAGVAADVEVWAIRDNEFGMDQ-SAAKGLLD 205 (214) T ss_dssp CGGGEEEEECSH---HHHHHHHHTTCEEEEECCSSSCCCC-TTSSEEES T ss_pred CCCCEEEEECCH---HHHHHHHHCCCEEEEECCCCCCHHH-CCCCEEEC T ss_conf 936379995699---9999999859989998999988446-58999999 No 419 >1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside hydrolase, transferase; 1.77A {Bifidobacterium adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A* 2gdu_A* Probab=20.37 E-value=30 Score=12.39 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=40.9 Q ss_pred HCCCCEEEEECCCCCHHHHHHHH-HHHHHHCCCCEEEEECC---C--CCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCH Q ss_conf 77997999940788615289999-99999769947998078---7--433668897898874202686899964887623 Q gi|254780901|r 90 YNSEKIMIFGDYDVDGAASVALM-MRFLSHCSVNANMYIPD---R--IVDGYGPNPSLMEKFINEGAQLIITVDCGSTSY 163 (600) Q Consensus 90 ~~~ekI~I~gDyD~DGitstail-~~~L~~~g~~v~~~IP~---R--~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~ 163 (600) +++=-..+|+|.+-+|--.+.+- ..+|+.+|.+.-|.-|= + ...||...- .-.||---... T Consensus 2 ~~~~~~~~y~d~~~~Gdl~gi~~~Ldyl~~LGv~~i~l~Pi~~~~~~~d~GY~~~d-------------y~~vdp~~Gt~ 68 (504) T 1r7a_A 2 KNKVQLITYADRLGDGTIKSMTDILRTRFDGVYDGVHILPFFTPFDGADAGFDPID-------------HTKVDERLGSW 68 (504) T ss_dssp CSSCEEEECSSSBSSSSHHHHHHHHHHHSTTTCCEEEECCCEECSSSSSTTSSCSE-------------EEEECTTTCCH T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC-------------CCHHCHHCCCH T ss_conf 86379998247789988789999878999769267997997889877888927433-------------12006101999 Q ss_pred HHHHHHHHCCCCEEE Q ss_conf 455555417982799 Q gi|254780901|r 164 DALQYATNQGIDVIV 178 (600) Q Consensus 164 e~i~~a~~~GidvIV 178 (600) +..+.+ .+||.||. T Consensus 69 ~d~~~L-~rGi~VIl 82 (504) T 1r7a_A 69 DDVAEL-SKTHNIMV 82 (504) T ss_dssp HHHHHH-HTTSEEEE T ss_pred HHHHHH-HHCCEEEE T ss_conf 999999-80998999 No 420 >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A Probab=20.34 E-value=30 Score=12.38 Aligned_cols=70 Identities=14% Similarity=0.149 Sum_probs=46.9 Q ss_pred HHHHHHHCCCCEEEEE-CCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCC Q ss_conf 9999997699479980-78743366889789887420268689996488762345555541798279961544 Q gi|254780901|r 112 MMRFLSHCSVNANMYI-PDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVIDHHQ 183 (600) Q Consensus 112 l~~~L~~~g~~v~~~I-P~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~~GidvIVtDHH~ 183 (600) +.+.+...|++--|.+ -+...+|-..+...++.+.+.. .=+++.-|+.+.+.++.+-+.|.+-|++-... T Consensus 35 ~a~~~~~~ga~~l~ivDLda~~~~~~~~~~~~~~~~~~~--~pl~~gGGI~s~~~~~~~~~~Ga~kV~i~s~~ 105 (241) T 1qo2_A 35 LVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEKLSEFA--EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKV 105 (241) T ss_dssp HHHHHHHTTCCCEEEEEHHHHHHCCCTTHHHHHHGGGGG--GGEEEESSCCSHHHHHHHHHTTCCEEEECHHH T ss_pred HHHHHHHCCCCEEEEECCCHHHCCCCCHHHHHHHHHCCC--CCEEEEEEEEEHHHHHHHHHHHHHEECCCHHH T ss_conf 999999869988999736403227853599999885247--87599558877366667776420033153344 No 421 >2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans} Probab=20.30 E-value=30 Score=12.38 Aligned_cols=29 Identities=38% Similarity=0.455 Sum_probs=11.9 Q ss_pred CCEEEEEC---CCCCCHHHHHHHHHCCCCEEE Q ss_conf 86899964---887623455555417982799 Q gi|254780901|r 150 AQLIITVD---CGSTSYDALQYATNQGIDVIV 178 (600) Q Consensus 150 ~~LiItvD---~Gi~~~e~i~~a~~~GidvIV 178 (600) .++||+=+ ||||=.-++-.++..|+.+|| T Consensus 86 a~IlVaG~NFGcGSSREhA~~aL~~~Gi~aVI 117 (213) T 2hcu_A 86 ASILITGDNFGAGSSREHAAWALADYGFKVIV 117 (213) T ss_dssp CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEE T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHCCCCEEE T ss_conf 70899446323576347898999985976884 No 422 >2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Probab=20.29 E-value=30 Score=12.38 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=15.4 Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 8799999999999779979999407 Q gi|254780901|r 77 DCDKAARRIVQAIYNSEKIMIFGDY 101 (600) Q Consensus 77 dm~~A~~ri~~ai~~~ekI~I~gDy 101 (600) +++++.+.|.+|.+++-.++++.-+ T Consensus 20 N~~~~~~~i~~A~~~gadlvvfPE~ 44 (276) T 2w1v_A 20 NLTRACSLVREAAKQGANIVSLPEC 44 (276) T ss_dssp HHHHHHHHHHHHHHTTCSEEECCTT T ss_pred HHHHHHHHHHHHHHCCCEEEECCCC T ss_conf 9999999999999883969998878 No 423 >2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,, transport protein; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A* Probab=20.27 E-value=30 Score=12.37 Aligned_cols=77 Identities=9% Similarity=0.033 Sum_probs=45.3 Q ss_pred HHHHHHHHHCCCCEEEEECCCC-CCHHHHHHHHHCCCCEEEECCCCCCCCCC--CCEEEECCCCCCCCCCCCCHHHHHHH Q ss_conf 7898874202686899964887-62345555541798279961544765556--72565237888864334430478899 Q gi|254780901|r 139 PSLMEKFINEGAQLIITVDCGS-TSYDALQYATNQGIDVIVIDHHQVKSEEI--PAYALVNPNRLDDLSGQGHLCAAGVV 215 (600) Q Consensus 139 ~~~i~~~~~~g~~LiItvD~Gi-~~~e~i~~a~~~GidvIVtDHH~~~~~~p--~a~aivNP~~~~~~~p~~~l~gaGva 215 (600) .+.++.+...+++.||.+-... ...+.++.|++.||-||.+|+..++...+ .....|.. ++ +-.|.-.+ T Consensus 49 ~~~i~~~i~~~vD~iiv~~~d~~~~~~~l~~a~~~gipvv~~d~~~~~~~~~~~~~~~~V~~----d~----~~~G~~~~ 120 (309) T 2fvy_A 49 NDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGT----DS----KESGIIQG 120 (309) T ss_dssp HHHHHHHHHTTCSEEEECCSSGGGHHHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEEC----CH----HHHHHHHH T ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEEEE----CH----HHHHHHHH T ss_conf 99999999769999996674224159999999986997899657775333345776329951----62----88899999 Q ss_pred HHHHHHHH Q ss_conf 99999999 Q gi|254780901|r 216 FLVLVLIY 223 (600) Q Consensus 216 f~l~~al~ 223 (600) -.++..+. T Consensus 121 ~~l~~~~~ 128 (309) T 2fvy_A 121 DLIAKHWA 128 (309) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999754 No 424 >3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae} Probab=20.26 E-value=30 Score=12.37 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=9.3 Q ss_pred EEEEECCCCCCHHHHHHHHHCCC Q ss_conf 89996488762345555541798 Q gi|254780901|r 152 LIITVDCGSTSYDALQYATNQGI 174 (600) Q Consensus 152 LiItvD~Gi~~~e~i~~a~~~Gi 174 (600) +|+.|-.|..+..+...++++|. T Consensus 94 iv~~C~~G~rs~~a~~~L~~~G~ 116 (139) T 3d1p_A 94 LIFYCASGKRGGEAQKVASSHGY 116 (139) T ss_dssp EEEECSSSHHHHHHHHHHHTTTC T ss_pred EEEECCCCCHHHHHHHHHHHCCC T ss_conf 99988998389999999998599 No 425 >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* Probab=20.17 E-value=30 Score=12.36 Aligned_cols=98 Identities=9% Similarity=0.138 Sum_probs=48.6 Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCC-CCH-----HHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCHHHHHHHHH Q ss_conf 1487999999999997799799994078-861-----52899999999976-9947998078743366889789887420 Q gi|254780901|r 75 LTDCDKAARRIVQAIYNSEKIMIFGDYD-VDG-----AASVALMMRFLSHC-SVNANMYIPDRIVDGYGPNPSLMEKFIN 147 (600) Q Consensus 75 l~dm~~A~~ri~~ai~~~ekI~I~gDyD-~DG-----itstail~~~L~~~-g~~v~~~IP~R~~eGYGl~~~~i~~~~~ 147 (600) +.++++.++++ +.+-.. + ++| +|| +|-..-+.+.++.. ...+..|+=- .+ ....++++.+ T Consensus 12 ~~~l~~~i~~l----~~~~d~-i--HiDImDG~Fvpn~t~g~~~v~~i~~~t~~~~dvHLMv--~~----P~~~i~~~~~ 78 (231) T 3ctl_A 12 LLKFKEQIEFI----DSHADY-F--HIDIMDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMV--TR----PQDYIAQLAR 78 (231) T ss_dssp GGGHHHHHHHH----HTTCSC-E--EEEEECSSSSSCCCBCHHHHHHHHTTCCSCEEEEEES--SC----GGGTHHHHHH T ss_pred HHHHHHHHHHH----HCCCCE-E--EEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEE--CC----HHHHHHHHHH T ss_conf 99999999998----679999-9--9977678747644549999999874579855899996--68----8899999986 Q ss_pred CCCCEEEEE-CCC-CCCHHHHHHHHHCCCCEEE-ECCCCCC Q ss_conf 268689996-488-7623455555417982799-6154476 Q gi|254780901|r 148 EGAQLIITV-DCG-STSYDALQYATNQGIDVIV-IDHHQVK 185 (600) Q Consensus 148 ~g~~LiItv-D~G-i~~~e~i~~a~~~GidvIV-tDHH~~~ 185 (600) .|++.++.- ... ...++-++++++.|+.+-+ +....+. T Consensus 79 ~ga~~i~~H~Ea~~~~~~~~i~~i~~~g~~~Gialnp~T~~ 119 (231) T 3ctl_A 79 AGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPV 119 (231) T ss_dssp HTCSEEEECGGGCTTTHHHHHHHHHHTTCEEEEEECTTCCG T ss_pred CCCCEEEEEHHHHCCCHHHHHHHHHHCCCEEEEEECCCCCH T ss_conf 69987996325430359999999997798799995699970 No 426 >2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli} Probab=20.16 E-value=30 Score=12.36 Aligned_cols=79 Identities=14% Similarity=0.280 Sum_probs=51.2 Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCH-H--------HHHHHHHC-CCCEEEEECCCCCCH Q ss_conf 7999940788615289999999997699479980787433668897-8--------98874202-686899964887623 Q gi|254780901|r 94 KIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNP-S--------LMEKFINE-GAQLIITVDCGSTSY 163 (600) Q Consensus 94 kI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~-~--------~i~~~~~~-g~~LiItvD~Gi~~~ 163 (600) +|.||- -|+-+.+++....+.+-..-.+|+-|...-.||--. + .++.+.++ |+++|+. =|-+.+. T Consensus 23 ~IgvfD----SGvGGLtVl~~l~~~lP~~~~iY~~D~a~~PYG~ks~~~i~~~~~~~~~~ll~k~g~~~IVi-ACNTasa 97 (285) T 2jfn_A 23 TVLVFD----SGVGGLSVYDEIRHLLPDLHYIYAFDNVAFPYGEKSEAFIVERVVAIVTAVQERYPLALAVV-ACNTAST 97 (285) T ss_dssp EEEEEE----SSSTHHHHHHHHHHHSTTSEEEEEECTTTCCTTTSCHHHHHHHHHHHHHHHHHHSCCSEEEE-CCHHHHH T ss_pred EEEEEE----CCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE-ECCHHHH T ss_conf 589983----88358999999998789999899954787998999999999999999999986067768996-0647789 Q ss_pred HHHHHHHHC-CCCEE Q ss_conf 455555417-98279 Q gi|254780901|r 164 DALQYATNQ-GIDVI 177 (600) Q Consensus 164 e~i~~a~~~-GidvI 177 (600) -+.+.+++. .+.+| T Consensus 98 ~a~~~L~~~~~~pii 112 (285) T 2jfn_A 98 VSLPALREKFDFPVV 112 (285) T ss_dssp HHHHHHHHHCSSCEE T ss_pred HHHHHHHHHCCCCEE T ss_conf 989999987399812 No 427 >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, PSI-2, protein structure initiative; HET: MSE; 2.08A {Ruegeria pomeroyi} Probab=20.10 E-value=30 Score=12.35 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=41.1 Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH Q ss_conf 99799994078861528999999999769947998078743366889789887420268689996488762345555541 Q gi|254780901|r 92 SEKIMIFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATN 171 (600) Q Consensus 92 ~ekI~I~gDyD~DGitstail~~~L~~~g~~v~~~IP~R~~eGYGl~~~~i~~~~~~g~~LiItvD~Gi~~~e~i~~a~~ 171 (600) +.||+|+| + |-++.. +.+.|...+. ....+-+| +++..+.+...+...+ .+| +++.+.+... - T Consensus 5 ~~kI~ViG---a-G~vG~~-va~~L~~~~~-~~v~~~dr-------~~~~~~~~~~~~~~~~-~~d--~~d~~~l~~~-l 67 (118) T 3ic5_A 5 RWNICVVG---A-GKIGQM-IAALLKTSSN-YSVTVADH-------DLAALAVLNRMGVATK-QVD--AKDEAGLAKA-L 67 (118) T ss_dssp CEEEEEEC---C-SHHHHH-HHHHHHHCSS-EEEEEEES-------CHHHHHHHHTTTCEEE-ECC--TTCHHHHHHH-T T ss_pred CCCEEEEC---C-CHHHHH-HHHHHHHCCC-CCEEEECC-------CHHHHHHCCCCCCCCC-CCC--CCCHHHHHHH-H T ss_conf 07889986---7-999999-9999987899-84786126-------5666410001222211-124--4899999999-8 Q ss_pred CCCCEEE Q ss_conf 7982799 Q gi|254780901|r 172 QGIDVIV 178 (600) Q Consensus 172 ~GidvIV 178 (600) .|.|++| T Consensus 68 ~~~DvVi 74 (118) T 3ic5_A 68 GGFDAVI 74 (118) T ss_dssp TTCSEEE T ss_pred CCCCEEE T ss_conf 5998999 No 428 >3mmw_A Endoglucanase; TIM barrel fold, hydrolase; 1.85A {Thermotoga maritima} PDB: 3mmu_A Probab=20.08 E-value=30 Score=12.35 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=15.7 Q ss_pred HHHHHHHHCCCCEEEECCCCC Q ss_conf 455555417982799615447 Q gi|254780901|r 164 DALQYATNQGIDVIVIDHHQV 184 (600) Q Consensus 164 e~i~~a~~~GidvIVtDHH~~ 184 (600) +.|+.|+++||.||+.=||.+ T Consensus 78 ~~i~~a~~~gi~vild~h~~~ 98 (317) T 3mmw_A 78 EVINGALKRGLAVVINIHHYE 98 (317) T ss_dssp HHHHHHHTTTCEEEEECCCCH T ss_pred HHHHHHHHCCCEEEEECCCCC T ss_conf 999999977998999746664 No 429 >1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1 d.157.1.3 Probab=20.03 E-value=30 Score=12.34 Aligned_cols=56 Identities=13% Similarity=0.272 Sum_probs=30.5 Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHH-----HHHCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHH Q ss_conf 347502620578581222222789988-----420107998863798379998648986188888853 Q gi|254780901|r 366 QQASVIVVEGDRWHPGIVGLLAARLKE-----KFGRPSFAISFEEDGKGIGSGRSIEGFDIGKMVSFA 428 (600) Q Consensus 366 ~~~~~ivv~~~~wh~GViGIVAsrL~e-----~y~kP~iv~s~~~dg~~kGS~RSi~g~~l~~~l~~~ 428 (600) .+-..+++..|.|.-++..-++.-+.+ -.+||+.+|.-- | +|+.++. .+.+.|..+ T Consensus 318 ~~~d~~~~GsPT~~~~~~p~~~~~l~~l~~~~~~~K~~~~fgsy--g---w~g~a~~--~~~~~l~~~ 378 (410) T 1vme_A 318 PDSEALIFGVSTYEAEIHPLMRFTLLEIIDKANYEKPVLVFGVH--G---WAPSAER--TAGELLKET 378 (410) T ss_dssp TTCSEEEEEECEETTEECHHHHHHHHHHHHHCCCCCEEEEEEEC--C---CCCCC-C--CHHHHHHTS T ss_pred HHCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECC--C---CCCHHHH--HHHHHHHHC T ss_conf 52897999857738966789999999987253489989999827--9---8708999--999999987 Done!