RPSBLAST alignment for GI: 254780901 and conserved domain: TIGR00644

>gnl|CDD|161976 TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. Length = 539

 Score =  536 bits (1382), Expect = e-153
 Identities = 211/553 (38%), Positives = 325/553 (58%), Gaps = 16/553 (2%)

Query: 39  IPDIVARVLVNRNV-SIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMI 97
           +  I+A++LV+R + + +  ++FL P +  L PDP +L D +KA  RI++AI N+EKI+I
Sbjct: 1   LNPILAQILVSRGIKTAEEFENFLEPDLIDL-PDPFLLKDMEKAVERIIEAIENNEKILI 59

Query: 98  FGDYDVDGAASVALMMRFLSHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           FGDYDVDG  S A+++ FL    VN + YIP+RI +GYG +P  + + I  G  LIITVD
Sbjct: 60  FGDYDVDGITSTAILVEFLKDLGVNVDYYIPNRITEGYGLSPEALREAIENGVSLIITVD 119

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFL 217
            G ++++ + YA   GIDVIV DHH+   +   A A+VNPNR D       L  AGV F 
Sbjct: 120 NGISAHEEIDYAKELGIDVIVTDHHEPPEDLPEAAAIVNPNRPDCDYPNKELAGAGVAFK 179

Query: 218 VLVLIYRILRQDNKVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNP 277
           +   +   L +     L+      LDLVA+ T+ DV+PL G NRA V KGL   R+   P
Sbjct: 180 LCTALDEELPKLKPDLLDL-----LDLVAIGTIADVMPLTGENRALVKKGLKALRKGKRP 234

Query: 278 GLKALIERVNIS-SPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKL 336
           GLKAL++    +  P+++ ++G+ IGP INA GR+G+++L   LL++DD ++   LA +L
Sbjct: 235 GLKALLKVAGFNGKPLSSTDIGFSIGPRINAAGRLGDASLAVELLLTDDPKQARQLAEEL 294

Query: 337 DVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGR 396
           D LN+ R+ +E  +L +AE         +   SVIVV G+ WHPG++G++A+RL E F +
Sbjct: 295 DELNEERKKIEQEVLAEAEKIAEAN--LLPNDSVIVVAGENWHPGVLGIVASRLAETFNK 352

Query: 397 PSFAISFEEDGKGIGSGRSIEGFDIGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRL 456
           P   ++ +E     GS RSI G D+  ++S  + E + +K GGHAMAAGLT++R N    
Sbjct: 353 PVIVLAIDEGKGAKGSARSISGIDLYDLLS-ELREALFLKFGGHAMAAGLTLKRENLEEF 411

Query: 457 CDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNH 516
            +  ++    I+ A  +  +  +D  L A  +   LI+ +E   P+G GNP P+F   N 
Sbjct: 412 REKLEEKFKKILFADESEEILPVDAELKAEEITRELIEQIEKLEPFGQGNPEPLFLLKNL 471

Query: 517 KLQSIRVVNLAHLQMTFESQDSETLQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYW 576
           +++ I+++   HL+++ +S     ++AIAF          L  + G+ + V G L +N W
Sbjct: 472 RVEDIKLLGENHLKLSLKSGGK-NIEAIAFNAGDLE----LELNLGRPLDVAGKLSINEW 526

Query: 577 RGSKRCQLRVLDA 589
           RG +  QL + D 
Sbjct: 527 RGRETPQLIIQDL 539