RPSBLAST alignment for GI: 254780901 and conserved domain: PRK11070

>gnl|CDD|182944 PRK11070, PRK11070, ssDNA exonuclease RecJ; Provisional. Length = 575
 Score =  291 bits (748), Expect = 3e-79
 Identities = 186/531 (35%), Positives = 286/531 (53%), Gaps = 36/531 (6%)

Query: 39  IPDIVARVLVNRNVSIDYAKDFLNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIF 98
           +P ++ R+  +R V    +   L  S++ L+P    L+  +KA   +  A+    +I++ 
Sbjct: 20  LPPLLRRLYASRGVR---SAQELERSVKGLLPWQQ-LSGIEKAVELLYNALREGTRIIVV 75

Query: 99  GDYDVDGAASVALMMRFL-SHCSVNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVD 157
           GD+D DGA S AL +  L S    N +  +P+R  DGYG +P ++++    GAQLI+TVD
Sbjct: 76  GDFDADGATSTALSVLALRSLGCSNVDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVD 135

Query: 158 CGSTSYDALQYATNQGIDVIVIDHHQVKSEEIP-AYALVNPNRLDDLSGQGHLCAAGVVF 216
            G +S+  + +A   GI V+V DHH +  E +P A A++NPN  D       L   GV F
Sbjct: 136 NGISSHAGVAHAHALGIPVLVTDHH-LPGETLPAADAIINPNLRDCNFPSKSLAGVGVAF 194

Query: 217 LVLVLIYRILRQDN-------KVPLNFDLLSLLDLVALATVCDVVPLIGLNRAYVVKGLM 269
            +++ +   LR           +P   +L  LLDLVAL TV DVVPL   NR  V +GL 
Sbjct: 195 YLMLALRAFLRDQGWFDERGIAIP---NLAELLDLVALGTVADVVPLDANNRILVWQGLS 251

Query: 270 VARR-QGNPGLKALIERVN-ISSPITAENLGYMIGPSINAGGRIGESNLGSRLLISDDSQ 327
             R  +  PG+KAL+E  N  +  + A +LG+ +GP +NA GR+ + ++G  LL+ D+  
Sbjct: 252 RIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIG 311

Query: 328 ELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLTQCDDIQQASV-----IVVEGDRWHPGI 382
           E  +LA +LD LNQ R+ +E  M  Q EA  LT C+ ++++S      + +    WH G+
Sbjct: 312 EARVLANELDALNQTRKEIEQGM--QVEA--LTLCEKLERSSDTLPYGLAMYHPEWHQGV 367

Query: 383 VGLLAARLKEKFGRPSFAISFEEDGKGI--GSGRSIEGFDIGKMVSF--AVEEGILVKGG 438
           VG+LA+R+KE+F RP   I+F   G G   GSGRSI+G  +   +     +  G+++K G
Sbjct: 368 VGILASRIKERFHRP--VIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGLILKFG 425

Query: 439 GHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKIDGVLNASAVNIALIDMLES 498
           GHAMAAGL++E   F      F +     +   +   V   DG L+ + +++ + ++L  
Sbjct: 426 GHAMAAGLSLEEDKFELFQQRFGELVTEWLDPSLLQGVVWSDGELSPAEMSLEVAELLRD 485

Query: 499 AGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQD-SETLQAIAFRV 548
           AGP+G   P P+F      LQ  R+V   HL++  E       L  IAF V
Sbjct: 486 AGPWGQMFPEPLFDGRFRLLQQ-RLVGERHLKVMVEPVGGGPLLDGIAFNV 535