Query gi|254780902|ref|YP_003065315.1| isocitrate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 412
No_of_seqs 143 out of 1910
Neff 5.8
Searched_HMMs 39220
Date Mon May 30 03:10:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780902.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02088 LEU3_arch isopropylm 100.0 0 0 800.3 24.5 329 10-395 1-350 (350)
2 TIGR00175 mito_nad_idh isocitr 100.0 0 0 798.9 24.6 331 7-398 3-348 (348)
3 PRK07362 isocitrate dehydrogen 100.0 0 0 790.4 29.0 365 9-397 29-473 (474)
4 COG0473 LeuB Isocitrate/isopro 100.0 0 0 783.4 33.1 338 6-400 2-347 (348)
5 PRK09222 isocitrate dehydrogen 100.0 0 0 781.5 32.5 341 5-404 2-347 (482)
6 PRK06451 isocitrate dehydrogen 100.0 0 0 780.3 33.3 362 8-401 27-414 (415)
7 PRK00772 3-isopropylmalate deh 100.0 0 0 765.2 32.3 337 6-398 1-351 (352)
8 TIGR00169 leuB 3-isopropylmala 100.0 0 0 772.5 24.8 340 9-397 1-369 (370)
9 TIGR02924 ICDH_alpha isocitrat 100.0 0 0 776.2 21.0 337 8-403 1-342 (481)
10 PRK07006 isocitrate dehydrogen 100.0 0 0 761.0 31.9 365 6-398 18-409 (409)
11 PRK08997 isocitrate dehydrogen 100.0 0 0 759.2 32.1 330 6-398 1-334 (334)
12 PRK03437 3-isopropylmalate deh 100.0 0 0 753.0 33.5 338 1-399 1-345 (345)
13 PRK08194 tartrate dehydrogenas 100.0 0 0 747.8 33.6 341 7-401 3-352 (352)
14 pfam00180 Iso_dh Isocitrate/is 100.0 0 0 725.7 31.7 336 9-394 1-349 (349)
15 COG0538 Icd Isocitrate dehydro 100.0 0 0 704.5 31.3 365 9-399 20-407 (407)
16 KOG0785 consensus 100.0 0 0 708.0 23.1 325 9-398 37-365 (365)
17 TIGR02089 TTC tartrate dehydro 100.0 0 0 704.5 25.1 337 7-398 3-355 (355)
18 PRK08299 isocitrate dehydrogen 100.0 0 0 692.1 34.4 403 1-403 1-403 (403)
19 KOG0784 consensus 100.0 0 0 608.0 27.0 333 3-400 38-374 (375)
20 KOG1526 consensus 100.0 0 0 574.0 31.9 405 1-405 12-420 (422)
21 KOG0786 consensus 100.0 0 0 531.9 21.7 338 7-402 4-362 (363)
22 TIGR00183 prok_nadp_idh isocit 100.0 0 0 386.9 15.0 371 7-399 25-483 (483)
23 TIGR00127 nadp_idh_euk isocitr 100.0 0 0 342.5 22.3 402 2-403 1-412 (413)
24 pfam03971 IDH Monomeric isocit 99.5 3.9E-11 1E-15 88.8 19.0 221 137-375 414-648 (735)
25 COG2838 Icd Monomeric isocitra 99.3 9.3E-10 2.4E-14 80.2 16.1 215 137-369 420-647 (744)
26 TIGR00178 monomer_idh isocitra 97.8 0.00038 9.6E-09 45.2 10.3 315 31-375 325-655 (745)
27 PRK03877 consensus 96.6 0.0026 6.7E-08 39.9 4.1 81 246-340 244-325 (328)
28 PRK03743 pdxA 4-hydroxythreoni 96.5 0.0037 9.5E-08 39.0 4.3 82 246-341 245-327 (333)
29 PRK04507 consensus 96.5 0.0043 1.1E-07 38.6 4.5 82 246-341 238-320 (323)
30 PRK03946 pdxA 4-hydroxythreoni 96.5 0.0037 9.6E-08 39.0 4.1 82 245-340 219-301 (304)
31 PRK02848 consensus 96.5 0.0053 1.4E-07 38.0 4.8 82 246-341 250-332 (341)
32 PRK01909 pdxA 4-hydroxythreoni 96.3 0.0064 1.6E-07 37.5 4.5 83 246-342 241-324 (329)
33 PRK05312 pdxA 4-hydroxythreoni 96.3 0.0072 1.8E-07 37.2 4.5 82 246-341 250-332 (336)
34 PRK04607 consensus 96.2 0.0067 1.7E-07 37.4 4.2 81 246-340 245-326 (330)
35 PRK03367 consensus 96.2 0.0068 1.7E-07 37.3 4.2 82 246-341 243-325 (329)
36 PRK00232 pdxA 4-hydroxythreoni 96.2 0.0096 2.4E-07 36.4 4.8 81 247-341 248-329 (334)
37 PRK03371 pdxA 4-hydroxythreoni 96.0 0.0089 2.3E-07 36.6 4.1 80 246-339 244-324 (326)
38 PRK02746 pdxA 4-hydroxythreoni 96.0 0.0089 2.3E-07 36.6 4.1 83 246-340 240-329 (332)
39 COG1995 PdxA Pyridoxal phospha 95.9 0.012 3.1E-07 35.8 4.2 58 277-340 268-325 (332)
40 pfam04166 PdxA Pyridoxal phosp 95.8 0.011 2.7E-07 36.1 3.8 76 247-336 221-297 (299)
41 TIGR00557 pdxA 4-hydroxythreon 81.1 1.1 2.8E-05 23.5 2.2 54 276-335 266-319 (325)
42 PRK09198 putative nicotinate p 77.5 0.94 2.4E-05 24.0 0.9 14 209-222 263-276 (462)
43 KOG1671 consensus 71.1 3.2 8.2E-05 20.6 2.3 48 256-327 140-189 (210)
44 cd01569 PBEF_like pre-B-cell c 66.5 9.2 0.00024 17.8 6.0 16 318-333 330-345 (407)
45 cd03470 Rieske_cytochrome_bc1 64.9 3.2 8.1E-05 20.7 1.3 47 257-327 57-105 (126)
46 KOG3040 consensus 59.5 12 0.00032 17.0 5.5 191 55-288 24-223 (262)
47 TIGR01458 HAD-SF-IIA-hyp3 HAD- 58.7 13 0.00033 16.9 5.1 194 53-289 21-223 (258)
48 KOG4126 consensus 58.1 11 0.00028 17.3 3.0 70 7-76 72-148 (529)
49 PRK03767 TrpR binding protein 54.8 15 0.00038 16.5 4.5 71 1-75 1-78 (200)
50 PRK11780 isoprenoid biosynthes 45.9 20 0.00052 15.6 4.0 37 1-42 1-39 (217)
51 TIGR01769 GGGP geranylgeranylg 42.1 16 0.0004 16.3 1.7 13 248-260 71-83 (212)
52 PRK10364 sensor protein ZraS; 40.7 25 0.00063 15.1 6.7 14 326-339 251-264 (455)
53 TIGR01307 pgm_bpd_ind 2,3-bisp 40.5 17 0.00043 16.2 1.7 26 368-400 373-398 (529)
54 COG1023 Gnd Predicted 6-phosph 39.2 19 0.00048 15.8 1.8 81 325-406 209-295 (300)
55 KOG1222 consensus 38.8 11 0.00028 17.3 0.5 36 248-283 479-514 (791)
56 TIGR02475 CobW cobalamin biosy 35.5 26 0.00066 15.0 2.0 18 218-235 142-159 (349)
57 TIGR01800 cit_synth_II 2-methy 34.8 30 0.00077 14.5 4.6 118 245-371 173-316 (386)
58 pfam03260 Lipoprotein_11 Lepid 33.7 16 0.0004 16.3 0.7 30 209-238 67-96 (253)
59 TIGR01980 sufB FeS assembly pr 32.8 21 0.00054 15.5 1.2 14 129-144 206-220 (469)
60 KOG1349 consensus 32.0 18 0.00046 16.0 0.7 12 204-215 132-143 (309)
61 PRK13557 histidine kinase; Pro 31.8 34 0.00087 14.2 6.6 13 332-344 427-439 (538)
62 PRK10116 universal stress prot 31.2 35 0.00089 14.2 3.6 27 185-211 14-40 (142)
63 pfam09653 consensus 30.1 34 0.00086 14.2 1.9 24 352-375 30-53 (75)
64 TIGR01416 Rieske_proteo ubiqui 29.6 24 0.00062 15.2 1.0 21 301-327 150-171 (192)
65 TIGR02311 HpaI 2,4-dihydroxyhe 29.2 38 0.00096 14.0 2.2 34 338-375 178-215 (249)
66 COG0418 PyrC Dihydroorotase [N 28.7 38 0.00098 13.9 4.0 131 194-343 123-278 (344)
67 pfam00245 Alk_phosphatase Alka 28.3 39 0.001 13.9 3.0 56 7-62 1-62 (421)
68 TIGR01819 F420_cofD LPPG:Fo 2- 28.0 39 0.001 13.8 3.3 21 55-75 223-243 (359)
69 TIGR02061 aprA adenylylsulfate 27.1 36 0.00092 14.1 1.6 33 333-365 470-504 (651)
70 TIGR01472 gmd GDP-mannose 4,6- 27.0 41 0.001 13.7 1.9 54 188-269 203-259 (365)
71 COG1542 Uncharacterized conser 26.7 41 0.001 13.7 1.8 52 19-70 60-118 (593)
72 pfam02169 LPP20 LPP20 lipoprot 26.3 29 0.00075 14.6 1.0 34 277-312 12-45 (168)
73 cd01987 USP_OKCHK USP domain i 26.1 43 0.0011 13.6 4.7 26 184-209 9-34 (124)
74 COG2388 Predicted acetyltransf 26.0 36 0.00093 14.1 1.4 20 188-207 58-77 (99)
75 COG4990 Uncharacterized protei 25.7 40 0.001 13.8 1.6 11 188-198 172-182 (195)
76 pfam05378 Hydant_A_N Hydantoin 24.4 46 0.0012 13.4 3.4 10 195-204 139-148 (175)
77 COG1331 Highly conserved prote 24.2 46 0.0012 13.4 4.2 41 326-367 533-573 (667)
78 cd02955 SSP411 TRX domain, SSP 23.4 48 0.0012 13.3 3.8 16 192-207 5-20 (124)
79 cd07996 WGR_MMR_like WGR domai 23.4 41 0.001 13.7 1.3 10 264-273 19-28 (74)
80 TIGR01751 crot-CoA-red crotony 22.6 19 0.00047 15.9 -0.6 14 203-216 339-352 (409)
81 TIGR00713 hemL glutamate-1-sem 22.5 50 0.0013 13.2 5.2 195 135-368 138-346 (434)
82 TIGR01826 CofD_related conserv 21.7 52 0.0013 13.1 2.7 23 53-75 176-199 (331)
83 PRK10310 galactitol-specific P 21.7 52 0.0013 13.1 4.3 40 6-45 1-42 (94)
84 PRK12350 citrate synthase 2; P 21.6 52 0.0013 13.1 2.7 99 258-367 169-282 (352)
85 TIGR02434 CobF precorrin-6A sy 21.1 48 0.0012 13.3 1.3 45 55-117 15-62 (259)
86 pfam08973 DUF1893 Domain of un 20.4 45 0.0012 13.4 1.0 22 267-288 68-89 (134)
No 1
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases; InterPro: IPR011828 This entry represents a group of archaeal decarboxylating dehydrogenases which include the leucine biosynthesis enzyme 3-isopropylmalate dehydrogenase (LeuB, LEU3) and the methanogenic cofactor CoB biosynthesis enzyme isohomocitrate dehydrogenase (AksF). Both of these have been characterised in Methanococcus janaschii . Sequences from the non-methanogenic archaea are also represented in this entry, presumably LeuB, although phylogenetic trees cannot establish which gene is which in the methanogens.; GO: 0003862 3-isopropylmalate dehydrogenase activity, 0051287 NAD binding, 0009098 leucine biosynthetic process.
Probab=100.00 E-value=0 Score=800.30 Aligned_cols=329 Identities=21% Similarity=0.210 Sum_probs=294.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHH----CCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCC
Q ss_conf 7997598630899999999984----179984489982748998652862778999999865938872644898544321
Q gi|254780902|r 10 VVSLDGDEMTRIIWQLIQENLI----HPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKE 85 (412)
Q Consensus 10 Iv~l~GDgiG~Ei~~~~l~vl~----~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~~ 85 (412)
|+||+|||||||+++++.++|. ...++|++.+++.|.++|.|+|++||+|+++.||++|++||||+|||....+
T Consensus 1 vaVI~GDGIG~EV~~~A~~il~kli~~~~l~~e~~~~EaG~e~l~k~G~Alpe~tl~~i~k~DaiLFGA~t~~~~~ev-- 78 (350)
T TIGR02088 1 VAVIEGDGIGKEVIEAAIRILNKLIDKLGLEIELIELEAGDEALEKYGSALPEDTLEEIKKADAILFGAVTETAAVEV-- 78 (350)
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHCCCCCCHHHHHHHHHCCEEEECCCCCCCCCCC--
T ss_conf 967378888823147899999999987399437876120167775318998976899996279475378788887547--
Q ss_pred CCCCCCCCCHHHHHHHHCCCEEEEEEE-EEC------CCCCCCC--CCCCCEEEEECCCCCCCCCCEEE-ECCCCEEEEE
Q ss_conf 124422110458989732966883058-804------8787788--87786799850566630010147-7788459999
Q gi|254780902|r 86 FNLKKMWKSPNGTIRNILGGIIFREPI-ICS------NVPRLIP--GWKKPIIIGRHAFGDQYRATDFQ-FPSKGKLILK 155 (412)
Q Consensus 86 ~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~------~~p~~~~--~~~~divivREnteg~Y~gie~~-~~~~~~~~i~ 155 (412)
++|+|+.++|||.||+|+|+||+ .++ +++.... ..+.|||||||||||+|.|.|+. .....+...
T Consensus 79 ----p~YksvivtLRkeldlYANvRP~k~l~iGqliG~I~~~~~~na~~~DiVIVRENTE~LY~G~e~~e~~d~~~ia~- 153 (350)
T TIGR02088 79 ----PSYKSVIVTLRKELDLYANVRPAKALPIGQLIGGIEDLYNLNAKNLDIVIVRENTEGLYAGFEIGEFSDDLAIAI- 153 (350)
T ss_pred ----CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEE-
T ss_conf ----875304203214626433547666556420010224556667888217998625654324775200488515764-
Q ss_pred EECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCC-EEEEECHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9548886102554124665301011105146889999999999865998-999974267775108999999999863100
Q gi|254780902|r 156 FVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLP-LYLSTKDTILKSYDGRFKNIFNEIFEAEFK 234 (412)
Q Consensus 156 ~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~k-vt~v~KaNVlk~tdglf~~~~~eva~~~~~ 234 (412)
++.||+++|||+||||+||++|+|| ||+||||||||.|||||+++|+||++.
T Consensus 154 ------------------------RViTr~gSeRIa~~A~~lAk~r~rKKvT~vHKANVlk~tdgLF~~V~rEi~~~--- 206 (350)
T TIGR02088 154 ------------------------RVITRKGSERIARFAFELAKKRNRKKVTCVHKANVLKVTDGLFLEVCREIAKS--- 206 (350)
T ss_pred ------------------------EEECHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHCC---
T ss_conf ------------------------51024643999999999998607940789972334233563159999998517---
Q ss_pred CCCCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHH
Q ss_conf 24542320002436999999985496651-88632102326788887750753231243127987514421222203455
Q gi|254780902|r 235 NQFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRH 313 (412)
Q Consensus 235 ~~~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~ 313 (412)
|+.|+++++|||++||+||++|.+| ||||+|+|||||||+||+++|||||+||||||++ +|||||+||||||
T Consensus 207 ----~g~ve~~d~~vDs~a~~Lv~~P~~fDVIVTtNmFGDIlSD~A~~l~GsLGLaPSANiGd~--~AlFEPVHGsApD- 279 (350)
T TIGR02088 207 ----YGEVEYEDYLVDSAAMNLVKDPEKFDVIVTTNMFGDILSDLAAALVGSLGLAPSANIGDR--KALFEPVHGSAPD- 279 (350)
T ss_pred ----CCCEEHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCCC-
T ss_conf ----996413228899999985238630676786234524188999998502213676521045--2335776777656-
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC-----CHHHHHCCCCCCCCEEHH
Q ss_conf 655424877554727999999999998630257303899999999999999987981-----632300157888713099
Q gi|254780902|r 314 YRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFM-----TKDLALLIGPEQDWLSTT 388 (412)
Q Consensus 314 ~g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~-----T~DLg~~~~~~~~~~~T~ 388 (412)
||||||| ||+|+|||++|||+|+|+... .+-+..+++|+.+++.+|+. ||||| |.++|.
T Consensus 280 ----IAGKGIA-NP~A~ILs~~MmL~~~G~~sk----e~~~~l~~eA~~~~~~~~~~sGnklTPDlG-------G~~kT~ 343 (350)
T TIGR02088 280 ----IAGKGIA-NPTAAILSVAMMLDYLGELSK----EEEAKLVEEAVEYIIIEKKKSGNKLTPDLG-------GSAKTK 343 (350)
T ss_pred ----CCCCCCH-HHHHHHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-------CCCCHH
T ss_conf ----3664102-378999999999986111001----145789999999998731545663377788-------840144
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780902|r 389 DFIEKIS 395 (412)
Q Consensus 389 ef~daI~ 395 (412)
||++.|+
T Consensus 344 ev~~ei~ 350 (350)
T TIGR02088 344 EVGDEIA 350 (350)
T ss_pred HHHCCCC
T ss_conf 3312269
No 2
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent; InterPro: IPR004434 Several NAD- or NADP-dependent dehydrogenases, including 3-isopropylmalate dehydrogenase, tartrate dehydrogenase, and the multimeric forms of isocitrate dehydrogenase, share a nucleotide binding domain unrelated to that of lactate dehydrogenase and its homologs. These enzymes dehydrogenate their substates at a H-C-OH site adjacent to a H-C-COOH site; the latter carbon, now adjacent to a carbonyl group, readily decarboxylates. Mitochondrial NAD-dependent isocitrate dehydrogenases (IDH) resemble prokaryotic NADP-dependent IDH and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent IDH. The mitochondrial NAD-dependent isocitrate dehydrogenase is believed to be an alpha(2)-beta-gamma heterotetramer. All subunits are homologous and belog to this group. The NADP-dependent IDH of Thermus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus. ; GO: 0004449 isocitrate dehydrogenase (NAD+) activity, 0006099 tricarboxylic acid cycle, 0005739 mitochondrion.
Probab=100.00 E-value=0 Score=798.88 Aligned_cols=331 Identities=22% Similarity=0.268 Sum_probs=300.3
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHH-HHCCEEEECCCC---CCCCCC
Q ss_conf 3867997598630899999999984179984489982748998652862778999999-865938872644---898544
Q gi|254780902|r 7 TKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAI-KNCGVGIKCATI---TADQAR 82 (412)
Q Consensus 7 ~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eai-k~~~v~lkg~~~---tP~~~~ 82 (412)
+++++.|||||||||||.+|.++|++..+||+||++|+.+-.-+..-...|++|+++| |+++|+|||++- ||-.
T Consensus 3 ~~tVTlIPGDGIGPE~~~~V~~If~~~~~PI~fE~~dv~~~~~~~~~~~~~~~A~~SiG~rN~VaLKG~l~esaTp~~-- 80 (348)
T TIGR00175 3 KYTVTLIPGDGIGPEISGAVKEIFKAANVPIDFEEIDVSAIETDGKKSEIPDEAVESIGRRNKVALKGNLEESATPIG-- 80 (348)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHCCCCC--
T ss_conf 537898548884444688899999965897358878435553587666774799997200287203556322233577--
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCC--CCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCC
Q ss_conf 321124422110458989732966883058804878778887--786799850566630010147778845999995488
Q gi|254780902|r 83 VKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPGW--KKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDD 160 (412)
Q Consensus 83 ~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~~~~--~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~ 160 (412)
.++++.|+|++|||.||||+|+++ |+++|+.+.++ ++||||+||||||+|+|+||.++++..+++|.+
T Consensus 81 -----~gP~h~SlN~~LRk~LDLYANVvh--~ksl~G~kTRhG~dvD~v~IRENTEGEYSgLEHe~VPGVVESlK~i--- 150 (348)
T TIGR00175 81 -----KGPGHKSLNVALRKELDLYANVVH--CKSLPGIKTRHGEDVDIVIIRENTEGEYSGLEHESVPGVVESLKVI--- 150 (348)
T ss_pred -----CCCCCCCHHHHHHHHCCCEEEEEE--EECCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEECCCEEEECHHH---
T ss_conf -----888876146677665071055544--5437882467788643689963477210263417869425610201---
Q ss_pred CCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 8610255412466530101110514688999999999986599-899997426777510899999999986310024542
Q gi|254780902|r 161 GQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL-PLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDE 239 (412)
Q Consensus 161 g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~-kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~ 239 (412)
|+..+|||||||||||++++| +||+||||||||+.||||+++|+|||++||+
T Consensus 151 ----------------------T~~~seRIA~yAFeyA~~~gRK~VTaVHKANIMKL~DGLFl~~~~eVa~~eYP----- 203 (348)
T TIGR00175 151 ----------------------TREKSERIARYAFEYARKNGRKKVTAVHKANIMKLADGLFLEVCREVAKKEYP----- 203 (348)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCC-----
T ss_conf ----------------------02457889999999999748964899825101111004789988875553078-----
Q ss_pred CCEEHHHHHHHHHHHHHHCCCCCE---EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHH---HH
Q ss_conf 320002436999999985496651---886321023267888877507532312431279875144212222034---55
Q gi|254780902|r 240 LGITYTHRLIDDMVASSIKWSGGY---IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVT---RH 313 (412)
Q Consensus 240 ~~i~~~~~~vD~~~~~lv~~P~~f---Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAP---d~ 313 (412)
+|+++.|||||+|||+|++|+|| |+||||||||||||++|+|+||+|+.||+|+|.++. ..|+.+|+|++ |
T Consensus 204 -~I~~~~~IvDN~cMq~Vs~P~QFDdaVmVmPNLYG~Il~N~~aGL~GG~Gl~pG~N~G~~ya-~FE~g~r~~g~Gne~- 280 (348)
T TIGR00175 204 -DITFEEMIVDNTCMQLVSRPEQFDDAVMVMPNLYGNILSNLAAGLVGGPGLVPGANVGRDYA-VFEPGTRHTGLGNED- 280 (348)
T ss_pred -CCCCCCEEEEEHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEE-EECCCCCCCCCCCHH-
T ss_conf -87612034230000146785010774001777650289999988632434477713167436-872466788786477-
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC-C-CCHHHHHCCCCCCCCEEHHHHH
Q ss_conf 6554248775547279999999999986302573038999999999999999879-8-1632300157888713099999
Q gi|254780902|r 314 YRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDG-F-MTKDLALLIGPEQDWLSTTDFI 391 (412)
Q Consensus 314 ~g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G-~-~T~DLg~~~~~~~~~~~T~ef~ 391 (412)
|+||++| ||+|||||++|||+||| |+++|++|++||.+|+++| + +|+||| |.+||++|+
T Consensus 281 ----I~G~~~A-NPTA~iLss~~MLnHLg-------L~~~A~~I~~AV~~tI~eGPk~~T~DlG-------G~atT~dft 341 (348)
T TIGR00175 281 ----IAGKNIA-NPTALILSSVMMLNHLG-------LKEYADRIRKAVLATIAEGPKVRTKDLG-------GNATTSDFT 341 (348)
T ss_pred ----HHCCCCC-CHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCCCCCCC-------CCCCCHHHH
T ss_conf ----7168874-56899999998875348-------6458999999889987337554476657-------766318899
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780902|r 392 EKISDNL 398 (412)
Q Consensus 392 daI~~~l 398 (412)
++||++|
T Consensus 342 ~avi~~l 348 (348)
T TIGR00175 342 EAVIKRL 348 (348)
T ss_pred HHHHHHC
T ss_conf 9999609
No 3
>PRK07362 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=0 Score=790.41 Aligned_cols=365 Identities=22% Similarity=0.207 Sum_probs=317.0
Q ss_pred C-EEEECCCCCCHHHHHHHHHHHHCC-------CCCCEEEEEECCHHHHHHHC--CCCCHHHHHHHHHCCEEEECCCCCC
Q ss_conf 6-799759863089999999998417-------99844899827489986528--6277899999986593887264489
Q gi|254780902|r 9 P-VVSLDGDEMTRIIWQLIQENLIHP-------YLDIKIEYFDLSIQNRDLTD--DQVTIDAAHAIKNCGVGIKCATITA 78 (412)
Q Consensus 9 ~-Iv~l~GDgiG~Ei~~~~l~vl~~~-------~~~i~~e~~d~G~~~~d~tg--~~l~~da~eaik~~~v~lkg~~~tP 78 (412)
| |.+|+|||||||||+++++|++++ ...|+|.++.+|.++++++| ++||++|++++++++++||||++||
T Consensus 29 p~i~~IeGDGIGpeI~~a~~~V~daAv~kaygg~r~I~W~ev~aG~kA~~~~G~~~~LP~eTl~~i~~~~v~iKGPltTP 108 (474)
T PRK07362 29 PIIPFIRGDGTGVDIWPATQKVLDAAVAKAYGGERKINWFKVYAGDEACDLYGTYQYLPEDTLEAIREYGVAIKGPLTTP 108 (474)
T ss_pred CEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCCCCCCCHHHHHHHHHCCEEEECCCCCC
T ss_conf 87654378866664689999999999999738987058999737666998609988898999999997288985577788
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCCCC-CCCEEEEECCCCCCCCCCEEEECCCCEEEEE-
Q ss_conf 8544321124422110458989732966883058-804878778887-7867998505666300101477788459999-
Q gi|254780902|r 79 DQARVKEFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIPGW-KKPIIIGRHAFGDQYRATDFQFPSKGKLILK- 155 (412)
Q Consensus 79 ~~~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~~~-~~divivREnteg~Y~gie~~~~~~~~~~i~- 155 (412)
++++++|+||+|||.||||+|+||+ +++++|.+.+.+ ++|+|||||||||+|+|+||...++....+.
T Consensus 109 ---------vG~G~rSlNVaLRq~LDLYanvRPvk~~~GvpsP~k~pe~vD~VIvRENTEd~YaGiE~~~~s~~a~~l~~ 179 (474)
T PRK07362 109 ---------IGGGIRSLNVALRQIFDLYSCVRPCRYYSGTPSPHKNPQDLDVIVYRENTEDIYMGIEWEADDPIGQKLIN 179 (474)
T ss_pred ---------CCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCCCHHHHHHH
T ss_conf ---------89983448999988658646643675568988887886662599992698753443045337805788998
Q ss_pred EECCCCC--CEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHH--C-CCCEEEEECHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9548886--10255412466530101110514688999999999986--5-99899997426777510899999999986
Q gi|254780902|r 156 FVGDDGQ--TIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALA--R-QLPLYLSTKDTILKSYDGRFKNIFNEIFE 230 (412)
Q Consensus 156 ~~~~~g~--~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~--~-~~kvt~v~KaNVlk~tdglf~~~~~eva~ 230 (412)
|+.++-. .........+.......+..|+.+++|++|+||+||++ + +++||+|||+||||+|||+||+|++|+|.
T Consensus 180 ~l~~e~~~~~~~~~~~~~~~~~~i~iK~iSr~gseRivr~AfeyA~k~~~~rk~VT~VhKaNImK~TeG~F~~w~~evA~ 259 (474)
T PRK07362 180 HLNNVVIPASPKLGKRQIPLGSGIGIKPVSKTGSQRHIRRAIEHALRLPGDKRHVTLVHKGNIMKFTEGAFRDWGYELAT 259 (474)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 76654302444445533554313777640366678899999999997358984599996664220010058898999887
Q ss_pred HHCCCC-------------CCCCC------------------------------------------------EEHHHHHH
Q ss_conf 310024-------------54232------------------------------------------------00024369
Q gi|254780902|r 231 AEFKNQ-------------FDELG------------------------------------------------ITYTHRLI 249 (412)
Q Consensus 231 ~~~~~~-------------~~~~~------------------------------------------------i~~~~~~v 249 (412)
++|.+. ..||+ |..+++++
T Consensus 260 ~ef~~~~~~e~e~w~~~~~~~~P~i~~e~~a~~~~~~y~~~~~e~~~~~~~ev~~~~~~~~~~~~~~~~~~~i~v~d~i~ 339 (474)
T PRK07362 260 TEFRDDCVTERESWILDNKEKNPDISIEDNARMIEPGYDSLTPEKKAAICAEVKEVLDSIGSSHGNGKWKEKVLVDDRIA 339 (474)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHH
T ss_conf 66300000001111111222376510000001134442111101110011222222100110135545454056509999
Q ss_pred HHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCHH
Q ss_conf 99999985496651-88632102326788887750753231243127987514421222203455655424877554727
Q gi|254780902|r 250 DDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSI 328 (412)
Q Consensus 250 D~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~NP~ 328 (412)
||+|||||++|++| ||||+|||||||||++|+++||||++||||||++ ++||||+|||||| |||||+| ||+
T Consensus 340 D~~~~qlv~~P~~fDVIvt~NL~GDiLSDl~AalvGGlGiAPgaNIg~~--~A~FEpvHGSAPd-----iAGk~~A-NP~ 411 (474)
T PRK07362 340 DSIFQQIQTRPQEYSILATLNLNGDYISDAAAAIVGGLGMAPGANIGDN--AAIFEATHGTAPK-----HAGLDRI-NPG 411 (474)
T ss_pred HHHHHHHHHCHHHCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCC--CEEEECCCCCCCC-----CCCCCCC-CHH
T ss_conf 9999999739253376663133431465678874287655664423888--5688668887511-----0379866-929
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEHHHHHHHHHHH
Q ss_conf 999999999998630257303899999999999999987981632300157888713099999999999
Q gi|254780902|r 329 ASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKISDN 397 (412)
Q Consensus 329 a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~T~ef~daI~~~ 397 (412)
|+|||++|||+||| |.++|++|++|+.+|+++|++|+||++.+.++.+.++|+||+|+|++|
T Consensus 412 A~ILS~aMML~hLG-------~~eaA~~I~~Av~~~i~~~~vT~Dl~r~~~~~~~~~~tsef~~~ii~~ 473 (474)
T PRK07362 412 SVILSGVMMLEYLG-------WQEAADLITKGLSAAIANKQVTYDLARLMEPPVDPLSCSEFAEAIISH 473 (474)
T ss_pred HHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEECHHHHHHHHHHC
T ss_conf 99999999999859-------888999999999999976984432365315898460389999999853
No 4
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=783.41 Aligned_cols=338 Identities=20% Similarity=0.199 Sum_probs=304.0
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCC---CCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCC
Q ss_conf 13867997598630899999999984179---984489982748998652862778999999865938872644898544
Q gi|254780902|r 6 VTKPVVSLDGDEMTRIIWQLIQENLIHPY---LDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQAR 82 (412)
Q Consensus 6 m~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~---~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~ 82 (412)
|+++|++|||||||||||+++++||.+.. ++++|+++++|+++|++||.++|++++++++++|++||||+++|+|+.
T Consensus 2 ~~~~IavipGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~~ 81 (348)
T COG0473 2 KTYTIAVIPGDGIGPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWDP 81 (348)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCHHHHHHHHHCCEEEECCCCCCCCCC
T ss_conf 95589995789877889999999999866337743899950057899970998899999999758979983667887788
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCC--CCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCC
Q ss_conf 32112442211045898973296688305880487877888--7786799850566630010147778845999995488
Q gi|254780902|r 83 VKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPG--WKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDD 160 (412)
Q Consensus 83 ~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~~~--~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~ 160 (412)
.+ .+.+|++++|||.||||+|+||. +.+|+..++ .+.|+|||||||||+|+|.+.....++
T Consensus 82 ~~-----~~~~~~ll~lRk~l~lyANlRP~--k~~~~~k~~~~~~~D~viVREnTeG~Y~G~~~~~~~~~---------- 144 (348)
T COG0473 82 LP-----RPERGLLLALRKELDLYANLRPA--KSLPGLKSPLVKGVDIVIVRENTEGLYFGEEGRILGGG---------- 144 (348)
T ss_pred CC-----CCCCCHHHHHHHHCCCEEEEEEC--CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC----------
T ss_conf 89-----76301578999863821540032--45799987666895089996388760148876545897----------
Q ss_pred CCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHC-CCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 86102554124665301011105146889999999999865-99899997426777510899999999986310024542
Q gi|254780902|r 161 GQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALAR-QLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDE 239 (412)
Q Consensus 161 g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~-~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~ 239 (412)
+.++.++.|||.++|||+|+||++|++| ++|||+|||+|||+.+++|||++++|++ ++ |
T Consensus 145 -------------eva~~~~~~Tr~~~eRI~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva-~~------y 204 (348)
T COG0473 145 -------------EVAIDTKVITRKGSERIARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVA-KE------Y 204 (348)
T ss_pred -------------EEEEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHH-HC------C
T ss_conf -------------279998750088899999999999996079946898600105653678999999986-11------8
Q ss_pred CCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 320002436999999985496651-8863210232678888775075323124312798751442122220345565542
Q gi|254780902|r 240 LGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQ 318 (412)
Q Consensus 240 ~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~i 318 (412)
|+|+++|+||||++||||++|++| ||||+|||||||||+||+|+|||||+||||+|++...+||||+|||||| |
T Consensus 205 Pdv~~~~~~VD~aam~lV~~P~~FDViVt~NlFGDILSD~aa~l~GslGl~PSAnig~~~~~~lfEPvHGSAPD-----I 279 (348)
T COG0473 205 PDVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFGDILSDEAAALTGSLGLAPSANLGDERGPALFEPVHGSAPD-----I 279 (348)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-----C
T ss_conf 98614467488999998609320678977653168887688874376445765756998887303017887655-----4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHCCCCCCCCEEHHHHHHHHHHH
Q ss_conf 4877554727999999999998630257303899999999999999987-981632300157888713099999999999
Q gi|254780902|r 319 QGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVED-GFMTKDLALLIGPEQDWLSTTDFIEKISDN 397 (412)
Q Consensus 319 aGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~-G~~T~DLg~~~~~~~~~~~T~ef~daI~~~ 397 (412)
|||||| ||+|+|||++|||+|+|+. ++|++|++||.+++++ |++|+||| |..+|.||+|+|+++
T Consensus 280 AGkgiA-NPiA~IlS~aMML~~~g~~-------~~A~~Ie~Av~~vl~~~g~~T~Dlg-------g~~~T~e~~d~I~~~ 344 (348)
T COG0473 280 AGKGIA-NPIATILSAAMMLRHLGEK-------EAADAIENAVEKVLAEGGIRTPDLG-------GNATTSEVGDAIAKA 344 (348)
T ss_pred CCCCCC-CHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHCCCCCCCCCC-------CCCCHHHHHHHHHHH
T ss_conf 688766-8499999999999986880-------6899999999999973897785558-------986689999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780902|r 398 LRD 400 (412)
Q Consensus 398 l~~ 400 (412)
|+.
T Consensus 345 l~~ 347 (348)
T COG0473 345 LAS 347 (348)
T ss_pred HHC
T ss_conf 734
No 5
>PRK09222 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=0 Score=781.48 Aligned_cols=341 Identities=25% Similarity=0.245 Sum_probs=304.4
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCC-CCCHHHHHHHHHCCEEEECCCCCCCCCCC
Q ss_conf 11386799759863089999999998417998448998274899865286-27789999998659388726448985443
Q gi|254780902|r 5 KVTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDD-QVTIDAAHAIKNCGVGIKCATITADQARV 83 (412)
Q Consensus 5 km~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~-~l~~da~eaik~~~v~lkg~~~tP~~~~~ 83 (412)
.|+.+|++|||||||||||+++++||++...+|+|+++++|+..|++++. .+|+++++++++++++||||++||.+
T Consensus 2 ~~~~~IaVipGDGIGPEIm~aal~VL~aa~~~i~~e~~~iG~~~~~~~~~~~lp~etle~i~~~daiL~Gpv~tP~g--- 78 (482)
T PRK09222 2 AMSTPITVAYGDGIGPEIMEAVLYILREAEAPIEIETIEIGEKVYKKGWSSGISPSSWESIRRTKVLLKAPITTPQG--- 78 (482)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHCCCCCCCCHHHHHHHHHCCEEEECCCCCCCC---
T ss_conf 98882799898873199999999999966999459999536998850699999999999999679899887668988---
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCEEEEEEE-EE-CCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCC
Q ss_conf 21124422110458989732966883058-80-48787788877867998505666300101477788459999954888
Q gi|254780902|r 84 KEFNLKKMWKSPNGTIRNILGGIIFREPI-IC-SNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDG 161 (412)
Q Consensus 84 ~~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~-~~~p~~~~~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~g 161 (412)
++++|+|++|||.||||+|+||. .+ +.++. +..++|+|||||||||+|+|+|+....+....+
T Consensus 79 ------~g~kslnl~LRk~LdLyANvRP~~~~~P~v~~--~~~~iDivIVREnTEGlY~Gie~~~~~dv~~~~------- 143 (482)
T PRK09222 79 ------GGYKSLNVTLRKTLGLYANIRPCVSYHPFVET--KHPNLDVVIIRENEEDLYAGIEHRQTPDTYQCL------- 143 (482)
T ss_pred ------CCCCCCCHHHHHHCCCCEEEEEEEECCCCCCC--CCCCCCEEEEEECCCCCCCCEEEECCCCCEEEE-------
T ss_conf ------88566105678757987887787412577778--788964899974578701551343478806999-------
Q ss_pred CCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCC-CCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 61025541246653010111051468899999999998659-98999974267775108999999999863100245423
Q gi|254780902|r 162 QTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQ-LPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDEL 240 (412)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~-~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~ 240 (412)
+.+|+.+++||+|+||+||++|+ +|||++||+|||+.|+|+||++++||+++ ||
T Consensus 144 ------------------k~iTr~g~eRI~r~AFe~A~~~~RkkVT~v~KaNVlk~t~gLfr~v~~eVa~e-------YP 198 (482)
T PRK09222 144 ------------------KLISRSGSEKIIRYAFEYARKNNRKKVTCLTKDNIMKMTDGIFHKVFNEIAKE-------YP 198 (482)
T ss_pred ------------------EEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH-------CC
T ss_conf ------------------99654564379999999999709980799975762066777999999999867-------79
Q ss_pred CEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHC
Q ss_conf 20002436999999985496651-88632102326788887750753231243127987514421222203455655424
Q gi|254780902|r 241 GITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQ 319 (412)
Q Consensus 241 ~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~ia 319 (412)
+|+++|+||||++||||++|++| ||||+|||||||||++|+|+|||||+||||||++ ++||||+|||||| ||
T Consensus 199 dVe~~~~~VD~~amqLV~~P~~FDVIVt~NLfGDILSD~aa~l~GslGlapSaniG~~--~amFEpvHGSAPD-----IA 271 (482)
T PRK09222 199 DIEAEHYIIDIGAARLATNPENFDVIVTSNLYGDIISDIAAEISGSVGLAGSANIGEE--YAMFEAVHGSAPD-----IA 271 (482)
T ss_pred CCEEEEEEHHHHHHHHHCCHHHCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCC--CEEEECCCCCCHH-----HC
T ss_conf 8646887777899998568455978998864067888898885277554444534898--6688778886112-----36
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEHHHHHHHHHHHHH
Q ss_conf 87755472799999999999863025730389999999999999998798163230015788871309999999999999
Q gi|254780902|r 320 GKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKISDNLR 399 (412)
Q Consensus 320 Gk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~T~ef~daI~~~l~ 399 (412)
|||+| ||+|||||++|||+|+| +.++|++|++|+.+||++|++|+|+.+.. .+...++|+||+|||++||.
T Consensus 272 Gk~iA-NP~a~ILSaaMML~hlG-------~~e~A~~Ie~A~~~tle~G~~T~Di~~~~-~~~~~v~t~~f~~avi~~lg 342 (482)
T PRK09222 272 GKNIA-NPSGLLNAAVMMLVHIG-------QFDIAELIENAWLKTLEDGIHTADIYNEG-VSKKKVGTKEFAEAVIKNLG 342 (482)
T ss_pred CCCCC-CCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCHHHCCCC-CCCCEECHHHHHHHHHHHHC
T ss_conf 89875-90999999999999758-------88899999999999997588651322678-66641057999999999856
Q ss_pred HHHHH
Q ss_conf 99987
Q gi|254780902|r 400 DALQK 404 (412)
Q Consensus 400 ~~l~~ 404 (412)
++.++
T Consensus 343 ~~p~~ 347 (482)
T PRK09222 343 QKPEK 347 (482)
T ss_pred CCCCC
T ss_conf 89876
No 6
>PRK06451 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=0 Score=780.28 Aligned_cols=362 Identities=21% Similarity=0.242 Sum_probs=316.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHC-------CCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCC
Q ss_conf 8679975986308999999999841-------799844899827489986528627789999998659388726448985
Q gi|254780902|r 8 KPVVSLDGDEMTRIIWQLIQENLIH-------PYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQ 80 (412)
Q Consensus 8 ~~Iv~l~GDgiG~Ei~~~~l~vl~~-------~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~ 80 (412)
..|++|||||||||||+++++||++ ..++|+|.++++|+++|++||+++|+++++++++++++||||+++|.
T Consensus 27 p~IavIpGDGIGPEV~~aa~kVLdaa~~~~y~~~~~i~~~e~~~G~~a~~~~G~~lP~etl~~~~~~daiL~Gavg~P~- 105 (415)
T PRK06451 27 PVILYIEGDGIGPEITNAARKVVDKAVEKAYGSSREIKWVEVLAGDKAEKLTGDRFPKETQEMLLKYRVVLKGPLETPI- 105 (415)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCC-
T ss_conf 7899969997658899999999999999852988606999857679999978897899999999978989989878999-
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCCC-CCCCEEEEECCCCCCCCCCEEEECCCCEEEEE-EE
Q ss_conf 44321124422110458989732966883058-80487877888-77867998505666300101477788459999-95
Q gi|254780902|r 81 ARVKEFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIPG-WKKPIIIGRHAFGDQYRATDFQFPSKGKLILK-FV 157 (412)
Q Consensus 81 ~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~~-~~~divivREnteg~Y~gie~~~~~~~~~~i~-~~ 157 (412)
+++|+|+|++|||.||||+|+||+ .+++++.+.+. .++|+|||||||||+|+|+||...++....+. |+
T Consensus 106 --------~~~~~s~~l~LRk~ldLyaNiRPvk~~pg~~sPlk~pe~iD~vIvREnTEG~Y~Gie~~~~~~~~~~~~~~~ 177 (415)
T PRK06451 106 --------GKGWKSINVAIRLMLDLYANIRPVKYIPGLESPLKNPEKVDMIIFRENTDDLYRGIEYPYDSEEAKKIRKFL 177 (415)
T ss_pred --------CCCCCCCCHHHHHHCCCEEECCEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHCC
T ss_conf --------899887347889765880760047614898887688666049999458888646722356773024444304
Q ss_pred CCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCC-CCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 488861025541246653010111051468899999999998659-9899997426777510899999999986310024
Q gi|254780902|r 158 GDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQ-LPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQ 236 (412)
Q Consensus 158 ~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~-~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~ 236 (412)
..+. ..+......+..+.+|+.+|+||+|+||+||++|+ ++||+|||+|||++|+|+||+|+.|++.++|++.
T Consensus 178 ~~~~------~~~~~~d~ai~~~~~t~~~~eRI~r~Af~~A~~~~rkkVT~v~KaNVl~~t~g~fr~~~~eva~~e~~d~ 251 (415)
T PRK06451 178 REEL------KVDVEDDTGIGIKVISRFKTQRITRLAIKYAIDNKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEFRDY 251 (415)
T ss_pred CCCC------EEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 3221------1322676146567510465899999999999972999548987875551122279999999998764654
Q ss_pred --------------CCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEE
Q ss_conf --------------542320002436999999985496651-88632102326788887750753231243127987514
Q gi|254780902|r 237 --------------FDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTM 301 (412)
Q Consensus 237 --------------~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~ 301 (412)
..+..|.++|+||||+|||||++|++| ||||+|||||||||+||+|+||||++||+|+|++ .+
T Consensus 252 ~~~~~~~~~~y~~~~~~~~v~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GglGl~psanig~~--~a 329 (415)
T PRK06451 252 VVTEEEINKLYNGKPPEGKIIVNDRIADNMFQQIITRPDEYDIILAPNVNGDYISDAAGALIGNIGMLGGANIGDT--GG 329 (415)
T ss_pred CCCHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCC--CE
T ss_conf 3321233221146776652675459999999998438501798997642057888888874077545664221898--64
Q ss_pred EECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCC
Q ss_conf 42122220345565542487755472799999999999863025730389999999999999998798163230015788
Q gi|254780902|r 302 ETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPE 381 (412)
Q Consensus 302 mfEp~HGSAPd~~g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~ 381 (412)
||||+|||||| |||||+| ||+|||||++|||+||| ++++|++|++||.+++++|++|+||++.. +
T Consensus 330 ~FEpvHGSAPd-----iaGk~iA-NP~a~ILS~amML~~lg-------~~~~A~~I~~Av~~vl~~g~~T~Dl~~~~--g 394 (415)
T PRK06451 330 MFEAIHGTAPK-----YAGKNVA-NPTGIIKGCELMLRFMG-------WNEAADLIEKAINESIRQKKVTQDLARFM--G 394 (415)
T ss_pred EEECCCCCCCC-----CCCCCCC-CHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCCCCCCCC--C
T ss_conf 66558888634-----2579866-90999999999999869-------98999999999999997799161213467--9
Q ss_pred CCCEEHHHHHHHHHHHHHHH
Q ss_conf 87130999999999999999
Q gi|254780902|r 382 QDWLSTTDFIEKISDNLRDA 401 (412)
Q Consensus 382 ~~~~~T~ef~daI~~~l~~~ 401 (412)
.+.++|+||+|||+++|++.
T Consensus 395 ~~~~~T~e~~daIi~~l~~l 414 (415)
T PRK06451 395 VTPLGTREYTDELIDIMDTL 414 (415)
T ss_pred CCCCCHHHHHHHHHHHHHHH
T ss_conf 98568899999999998844
No 7
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=765.20 Aligned_cols=337 Identities=20% Similarity=0.192 Sum_probs=299.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCC----CCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 1386799759863089999999998417----998448998274899865286277899999986593887264489854
Q gi|254780902|r 6 VTKPVVSLDGDEMTRIIWQLIQENLIHP----YLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQA 81 (412)
Q Consensus 6 m~~~Iv~l~GDgiG~Ei~~~~l~vl~~~----~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~ 81 (412)
|+++|++|||||||||||++++++|++. .++++|+++++|.++|++||+++|+++++++++++++||||+++|.|+
T Consensus 1 MtykI~vipGDGIGpEI~~aa~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~t~~~~~~~daiL~Gavg~P~~~ 80 (352)
T PRK00772 1 MTYKIAVLPGDGIGPEVMAEAVKVLEAVAKKFGLEFEFEEALVGGAAIDAHGVPLPEETLEACKAADAVLLGAVGGPKWD 80 (352)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCCEEECCCCCCCCC
T ss_conf 96169997978635999999999999987740997799998547999997599488999999985595777356799888
Q ss_pred CCCCCCCCCCCCCH--HHHHHHHCCCEEEEEEE-EECCCCC--CCCC---CCCCEEEEECCCCCCCCCCEEEECCCCEEE
Q ss_conf 43211244221104--58989732966883058-8048787--7888---778679985056663001014777884599
Q gi|254780902|r 82 RVKEFNLKKMWKSP--NGTIRNILGGIIFREPI-ICSNVPR--LIPG---WKKPIIIGRHAFGDQYRATDFQFPSKGKLI 153 (412)
Q Consensus 82 ~~~~~~l~~~~~S~--n~~LR~~ldl~~~~rp~-~~~~~p~--~~~~---~~~divivREnteg~Y~gie~~~~~~~~~~ 153 (412)
..+.. .++. +++|||.||||+|+||+ .+++++. +.++ .++|+|||||||||+|+|.++....+
T Consensus 81 ~~~~~-----~~~~~~ll~LRk~lDLyaNvRP~r~~~gv~~~~plk~~~~~~iD~vivRENTEg~Y~g~~~~~~~~---- 151 (352)
T PRK00772 81 NLPPE-----VRPERGLLPLRKELGLFANLRPAKLYPGLADASPLKPEIVAGLDILIVRELTGGIYFGQPKGREEE---- 151 (352)
T ss_pred CCCCC-----CCCHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCEECE----
T ss_conf 88988-----785487999999728748888862456666668887766688748999734566033788760033----
Q ss_pred EEEECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99954888610255412466530101110514688999999999986599899997426777510899999999986310
Q gi|254780902|r 154 LKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEF 233 (412)
Q Consensus 154 i~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~ 233 (412)
.+..++.+|+++++||+|+||+||++|++|||++||+||||.++ +|+++|+||+++
T Consensus 152 ---------------------~a~~~~~iTr~~~eRi~r~Af~~A~~rrkkVt~vhKaNvmk~~~-lf~~~~~eva~~-- 207 (352)
T PRK00772 152 ---------------------RAFDTMVYTREEIERIARVAFELARKRRKKVTSVDKANVLESSQ-LWREVVTEVAKE-- 207 (352)
T ss_pred ---------------------EEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH-HHHHHHHHHHHH--
T ss_conf ---------------------99998885399999999999999985699469997664300479-999999998512--
Q ss_pred CCCCCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHH
Q ss_conf 024542320002436999999985496651-8863210232678888775075323124312798751442122220345
Q gi|254780902|r 234 KNQFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTR 312 (412)
Q Consensus 234 ~~~~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd 312 (412)
||+|++++++||++|||||++|++| ||||+|||||||||++|+|+|||||+||+|||+++ ++||||+||||||
T Consensus 208 -----yp~I~~~~~~vDa~~~~Lv~~P~~fDViV~~NlfGDIlSDlaa~l~GglGlapsanig~~~-~a~FEp~HGSAPd 281 (352)
T PRK00772 208 -----YPDVELEHMYVDNAAMQLVRNPKQFDVIVTENLFGDILSDEAAMLTGSLGMLPSASLGESG-PGLYEPIHGSAPD 281 (352)
T ss_pred -----CCCCEEEEEEHHHHHHHHHCCHHHCCEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CEEECCCCCCCHH
T ss_conf -----6984588856669999972195755731246335678888998852764356533259987-6133345687344
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEHHHHH
Q ss_conf 5655424877554727999999999998-630257303899999999999999987981632300157888713099999
Q gi|254780902|r 313 HYRQHQQGKETSTNSIASIFAWTRGLLH-RAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFI 391 (412)
Q Consensus 313 ~~g~~iaGk~iA~NP~a~IlS~ammL~h-lg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~T~ef~ 391 (412)
|||||+| ||+|||||++|||+| +| +.++|++|++||.+++++|++|+||. +..|.+||+||+
T Consensus 282 -----iAGk~iA-NP~a~ilS~amML~~~lg-------~~~~A~~I~~Av~~~l~~g~~T~Dl~----~~Gg~~~T~e~~ 344 (352)
T PRK00772 282 -----IAGKGIA-NPIATILSAAMMLRYSLG-------LEEAADAIEAAVEKVLAQGYRTADIA----EGGGKVSTSEMG 344 (352)
T ss_pred -----HCCCCCC-CCHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCCCCC----CCCCCCCHHHHH
T ss_conf -----4699865-929999999999874559-------97999999999999997699277756----689862899999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780902|r 392 EKISDNL 398 (412)
Q Consensus 392 daI~~~l 398 (412)
+||+++|
T Consensus 345 ~avi~~l 351 (352)
T PRK00772 345 DAILAAL 351 (352)
T ss_pred HHHHHHH
T ss_conf 9999963
No 8
>TIGR00169 leuB 3-isopropylmalate dehydrogenase; InterPro: IPR004429 Several NAD- or NADP-dependent dehydrogenases, including 3-isopropylmalate dehydrogenase, tartrate dehydrogenase, and the dimeric forms of isocitrate dehydrogenase, share a nucleotide binding domain unrelated to that of lactate dehydrogenase and its homologs. These enzymes dehydrogenate their substates at a H-C-OH site adjacent to a H-C-COOH site; the latter carbon, now adjacent to a carbonyl group, readily decarboxylates. Among these decarboxylating dehydrogenases of hydroxyacids, overall sequence homology indicates evolutionary history rather than actual substrate or cofactor specifity, which may be toggled experimentally by replacement of just a few amino acids. 3-isopropylmalate dehydrogenase is an NAD-dependent enzyme and should have a sequence resembling HGSAPDI around residue 340. The subtrate binding loop should include a sequence resembling E[KQR]X(0,1)LLXXR around residue 115.; GO: 0003862 3-isopropylmalate dehydrogenase activity, 0009098 leucine biosynthetic process, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=772.48 Aligned_cols=340 Identities=19% Similarity=0.193 Sum_probs=295.4
Q ss_pred CEEEECCCCCCHHHHHHHHHHHH-----CCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCC
Q ss_conf 67997598630899999999984-----1799844899827489986528627789999998659388726448985443
Q gi|254780902|r 9 PVVSLDGDEMTRIIWQLIQENLI-----HPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARV 83 (412)
Q Consensus 9 ~Iv~l~GDgiG~Ei~~~~l~vl~-----~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~ 83 (412)
+|+||||||||||||.++++||+ -..+.++|+++.+||+++|+||.|||++|+++|++.|++|+|++|+|+|++.
T Consensus 1 ~IaVLPGDGIGPEi~a~Al~VLk~v~e~r~~~~f~f~~~~iGGAAID~~G~PLPeeTl~~c~~aDAvLLGaVGGPkWd~l 80 (370)
T TIGR00169 1 KIAVLPGDGIGPEIMASALKVLKAVAEKRFGLKFEFEEHLIGGAAIDATGQPLPEETLKACKEADAVLLGAVGGPKWDNL 80 (370)
T ss_pred CEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHCCCCCCCCHHHHHHHHHCCEEEEECCCCCCCCCC
T ss_conf 92562797965548999999975675431154131022442411010467887289999975107077604477334776
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCEEEEEEE-EE-CCCC--CCCCC----CCCCEEEEECCCCCCCCCCEEEECCCCEEEEE
Q ss_conf 21124422110458989732966883058-80-4878--77888----77867998505666300101477788459999
Q gi|254780902|r 84 KEFNLKKMWKSPNGTIRNILGGIIFREPI-IC-SNVP--RLIPG----WKKPIIIGRHAFGDQYRATDFQFPSKGKLILK 155 (412)
Q Consensus 84 ~~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~-~~~p--~~~~~----~~~divivREnteg~Y~gie~~~~~~~~~~i~ 155 (412)
|....++. --.+.|||.||||+|+||. .| +++. ++.+. .+.||+||||.|+|+|||.
T Consensus 81 P~~~RPE~--GGLL~lRK~l~LfANLRPa~~~S~~L~~~SPLK~e~~A~GvD~~vVRELTGGiYFG~------------- 145 (370)
T TIGR00169 81 PRDQRPEK--GGLLKLRKELDLFANLRPAKVFSDSLEDLSPLKEEIVAKGVDFVVVRELTGGIYFGE------------- 145 (370)
T ss_pred CCCCCCCC--CCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCEEEEEECCCCCCCCC-------------
T ss_conf 76678875--542677753685021475022104466215773577556833799863368501574-------------
Q ss_pred EECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC--CEEEEECHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 954888610255412466530101110514688999999999986599--899997426777510899999999986310
Q gi|254780902|r 156 FVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL--PLYLSTKDTILKSYDGRFKNIFNEIFEAEF 233 (412)
Q Consensus 156 ~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~--kvt~v~KaNVlk~tdglf~~~~~eva~~~~ 233 (412)
+.+......-...++.|+.|++.+|+||+|.||+.|++|++ |||+|||||||. ++.|||+++.|+++++|
T Consensus 146 -------P~g~~~~~~G~~~A~dT~~Y~~~Ei~RIaR~AFe~A~kr~~P~~vTSvDKANVL~-sS~LWR~~V~e~~~~eY 217 (370)
T TIGR00169 146 -------PKGREGAEEGEGEAVDTEVYTKPEIERIARVAFEMARKRRKPLKVTSVDKANVLE-SSRLWRKTVEEIAKEEY 217 (370)
T ss_pred -------CCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHH-HHHHHHHHHHHHHHCCC
T ss_conf -------1466666666411203411322356789999999998548898532100120455-43789999999984688
Q ss_pred CCCCCCCCEEHHHHHHHHHHHHHHCCCCCE--EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCC------CCCEEEECC
Q ss_conf 024542320002436999999985496651--886321023267888877507532312431279------875144212
Q gi|254780902|r 234 KNQFDELGITYTHRLIDDMVASSIKWSGGY--IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITA------DGKTMETEA 305 (412)
Q Consensus 234 ~~~~~~~~i~~~~~~vD~~~~~lv~~P~~f--Vivt~NL~GDIlSD~aa~l~GglGlapSanig~------~~~~~mfEp 305 (412)
++ ++++|+||||||||||++|++| ||||.|||||||||+||.|+|||||+||||+|. ++ +.+|||
T Consensus 218 Pd------v~L~H~yiDnAAM~Lvk~P~~fDGV~vT~N~FGDIlSDeAsvi~GSLGmLPSASL~~~~~K~~~g-~~L~EP 290 (370)
T TIGR00169 218 PD------VELEHQYIDNAAMQLVKSPRQFDGVVVTGNLFGDILSDEASVITGSLGMLPSASLGSLVDKEEDG-FGLFEP 290 (370)
T ss_pred CC------EEECCCHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCC-CEECCC
T ss_conf 80------57302158788767532865048667726533006888887630122323455431457654556-500167
Q ss_pred CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC------CCCCHHHHHCCC
Q ss_conf 22203455655424877554727999999999998630257303899999999999999987------981632300157
Q gi|254780902|r 306 AHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVED------GFMTKDLALLIG 379 (412)
Q Consensus 306 ~HGSAPd~~g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~------G~~T~DLg~~~~ 379 (412)
+|||||| ||||+|| ||+|+|||++|||||+. ++.++|++||+||.++|++ |++|+||+
T Consensus 291 ~HGSAPD-----IAGkgiA-NP~A~ILSAAMlLry~f------~~~~~a~~iE~Av~kvL~~tsiGG~G~rT~Dl~---- 354 (370)
T TIGR00169 291 VHGSAPD-----IAGKGIA-NPIAQILSAAMLLRYSF------NLEEAADAIEAAVKKVLAETSIGGRGYRTRDLG---- 354 (370)
T ss_pred CCCCCCC-----CCCCCCC-CHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC----
T ss_conf 8888873-----0357886-56899999999998507------906899999999999865204678876786677----
Q ss_pred CCCCCEEHHHHHHHHHHH
Q ss_conf 888713099999999999
Q gi|254780902|r 380 PEQDWLSTTDFIEKISDN 397 (412)
Q Consensus 380 ~~~~~~~T~ef~daI~~~ 397 (412)
+..||.-+|++|.+.
T Consensus 355 ---~~~~~~v~T~~~~e~ 369 (370)
T TIGR00169 355 ---SEATTAVGTKEVGEE 369 (370)
T ss_pred ---CCCCHHHHHHHHHHC
T ss_conf ---756304678998741
No 9
>TIGR02924 ICDH_alpha isocitrate dehydrogenase; InterPro: IPR014273 This entry represents a group of isocitrate dehydrogenases found mainly in the alphaproteobacteria. Many of the species containing these proteins appear to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 from EC vs. NADPH -- 1.1.1.42 from EC) is unclear..
Probab=100.00 E-value=0 Score=776.20 Aligned_cols=337 Identities=24% Similarity=0.257 Sum_probs=308.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCC-CCCHHHHHHHHHCCEEEECCCCCCCCCCCCCC
Q ss_conf 86799759863089999999998417998448998274899865286-27789999998659388726448985443211
Q gi|254780902|r 8 KPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDD-QVTIDAAHAIKNCGVGIKCATITADQARVKEF 86 (412)
Q Consensus 8 ~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~-~l~~da~eaik~~~v~lkg~~~tP~~~~~~~~ 86 (412)
.||+|-.|||||||||++||.+|.++..+|..|..++|..-|.+.=. -+-+++||+|+|++|.||.|++||+
T Consensus 1 ~PITVAYGDGIGPEIMeAVL~IL~eA~A~i~ietiEiG~~~Y~k~w~~GI~~SsWesI~RtKvLLKaPitTPQ------- 73 (481)
T TIGR02924 1 IPITVAYGDGIGPEIMEAVLLILKEAEAEIQIETIEIGEKVYKKEWSSGISPSSWESIRRTKVLLKAPITTPQ------- 73 (481)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCEECCCCCCCCCCCCCHHHHHHCCCEECCCCCCCC-------
T ss_conf 9706872799895278999999997179625678871310114788547875607889757704417877886-------
Q ss_pred CCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCC--CCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCCCCE
Q ss_conf 24422110458989732966883058804878778--8877867998505666300101477788459999954888610
Q gi|254780902|r 87 NLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLI--PGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTI 164 (412)
Q Consensus 87 ~l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~--~~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~g~~~ 164 (412)
|+|+||+||||||.|+||+|+|| |.++-|.+ ..++.||||||||-||+|.|+|++...+.-++.|.+
T Consensus 74 --GgG~KSLNVtlRK~LGLyANiRP--CvsyhP~i~t~~p~ldiVivRENEEDlYtGiEYR~T~d~Y~c~K~I------- 142 (481)
T TIGR02924 74 --GGGHKSLNVTLRKTLGLYANIRP--CVSYHPVIETKYPNLDIVIVRENEEDLYTGIEYRQTQDTYECTKVI------- 142 (481)
T ss_pred --CCCEEEHHHHHHHHCCCEEECCC--CCCCCCEECCCCCCCCEEEEEECCCCCCCCEEEEECCCCEEEEEEE-------
T ss_conf --58534124464322475041266--5300352416779834699983564232551143057810255534-------
Q ss_pred EEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 255412466530101110514688999999999986599-8999974267775108999999999863100245423200
Q gi|254780902|r 165 EKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL-PLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGIT 243 (412)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~-kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i~ 243 (412)
||.+||||.||||+||++++| ||||..|.||||+|||.|+..|.++|++ ||+|+
T Consensus 143 ------------------TrsgsEkIcrYAF~YA~~~nRKkVTCl~KDNIMK~TDGiFHk~F~~IA~e-------YPdI~ 197 (481)
T TIGR02924 143 ------------------TRSGSEKICRYAFEYARKHNRKKVTCLIKDNIMKLTDGIFHKIFDKIAKE-------YPDIE 197 (481)
T ss_pred ------------------ECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHC-------CCCCC
T ss_conf ------------------06862578999989877649868999620371301223678778997431-------78854
Q ss_pred HHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 02436999999985496651-88632102326788887750753231243127987514421222203455655424877
Q gi|254780902|r 244 YTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKE 322 (412)
Q Consensus 244 ~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~ 322 (412)
-||.+||--++++..+|+.| ||||+|||||||||.+|.+.||+|||.|||||.+ ||||||||||||| |||||
T Consensus 198 ~EhyIvDIG~Ar~A~~PE~FDVIVT~NLYGDIlSDvaA~~SGSvGLaGSaNIG~~--YAMFEAVHGSAPd-----IAGkn 270 (481)
T TIGR02924 198 SEHYIVDIGMARIATNPENFDVIVTPNLYGDILSDVAAEISGSVGLAGSANIGEE--YAMFEAVHGSAPD-----IAGKN 270 (481)
T ss_pred CCCEEEECCHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHCCC--CCEEEEECCCCCC-----CCCCC
T ss_conf 1640681033411367986545874776765477788876142222234412468--8604543277854-----15667
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHH
Q ss_conf 55472799999999999863025730389999999999999998798163230015788871309999999999999999
Q gi|254780902|r 323 TSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKISDNLRDAL 402 (412)
Q Consensus 323 iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~T~ef~daI~~~l~~~l 402 (412)
|| ||+++|.||.+||-|+||. +.|+.|++|..+|||+|++|+||.. ...++..++|.||++||++||.++.
T Consensus 271 IA-NPSGLLNAAi~MLvyigQ~-------d~A~liynAwLKTLEdGvHTADIy~-~k~Sk~KVgTkeFA~aV~~nlG~~P 341 (481)
T TIGR02924 271 IA-NPSGLLNAAIQMLVYIGQK-------DIAQLIYNAWLKTLEDGVHTADIYN-EKTSKKKVGTKEFAEAVVKNLGKKP 341 (481)
T ss_pred CC-CHHHHHHHHHHHHHHHCHH-------HHHHHHHHHHHHHHHCCCCHHHHCC-CCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 66-7005799999986400454-------6899998776444213743133212-3366666652579999998616781
Q ss_pred H
Q ss_conf 8
Q gi|254780902|r 403 Q 403 (412)
Q Consensus 403 ~ 403 (412)
.
T Consensus 342 ~ 342 (481)
T TIGR02924 342 E 342 (481)
T ss_pred C
T ss_conf 0
No 10
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=761.03 Aligned_cols=365 Identities=19% Similarity=0.215 Sum_probs=315.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCC-------CCCCEEEEEECCHHHHHHHCCC--CCHHHHHHHHHCCEEEECCCC
Q ss_conf 1386799759863089999999998417-------9984489982748998652862--778999999865938872644
Q gi|254780902|r 6 VTKPVVSLDGDEMTRIIWQLIQENLIHP-------YLDIKIEYFDLSIQNRDLTDDQ--VTIDAAHAIKNCGVGIKCATI 76 (412)
Q Consensus 6 m~~~Iv~l~GDgiG~Ei~~~~l~vl~~~-------~~~i~~e~~d~G~~~~d~tg~~--l~~da~eaik~~~v~lkg~~~ 76 (412)
++++|++|||||||||||+++++||++. .++|+|.++++|++++++||++ +|++++++|++++++||||++
T Consensus 18 ~~~~IavipGDGIGpEV~~aa~kVL~aa~~~~~~~~~~ie~~e~~~G~~~~~~~G~~~~lP~~tle~~~~~~~~l~G~~~ 97 (409)
T PRK07006 18 NNPIIPFIEGDGIGVDITPAMIKVVDAAVEKAYKGERKISWMEIYAGEKATKVYGEDVWLPEETLDLIREYRVAIKGPLT 97 (409)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHCEEEECCCC
T ss_conf 99889997998656899999999999999985388885599997165899997699879999999999871989969756
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCC-CCCCCEEEEECCCCCCCCCCEEEECCCCEEEE
Q ss_conf 898544321124422110458989732966883058-8048787788-87786799850566630010147778845999
Q gi|254780902|r 77 TADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIP-GWKKPIIIGRHAFGDQYRATDFQFPSKGKLIL 154 (412)
Q Consensus 77 tP~~~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~-~~~~divivREnteg~Y~gie~~~~~~~~~~i 154 (412)
||. +++++|+|++|||+||||+|+||+ .++++|++.+ +.++|+|||||||||+|+|+||....+....+
T Consensus 98 ~P~---------~~~~~~~~l~LRk~ldlyaNlRP~~~~~g~~spl~~~~~iD~vIvREnteg~Y~G~e~~~~~~~~~~~ 168 (409)
T PRK07006 98 TPV---------GGGIRSLNVALRQELDLYVCLRPVRYFKGVPSPVKRPEDTDMVIFRENSEDIYAGIEWKAGSAEAKKV 168 (409)
T ss_pred CCC---------CCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHH
T ss_conf 898---------88866522667986697326676344789988556766687799986777753671012587214567
Q ss_pred E-EECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9-954888610255412466530101110514688999999999986599-89999742677751089999999998631
Q gi|254780902|r 155 K-FVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL-PLYLSTKDTILKSYDGRFKNIFNEIFEAE 232 (412)
Q Consensus 155 ~-~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~-kvt~v~KaNVlk~tdglf~~~~~eva~~~ 232 (412)
. +..++ .+.......+........+|+.+++||+|+||+||++|+| +||+|||+|||++|||+|++|+++++++|
T Consensus 169 ~~~~~~~---~g~~~~~~~~~~~~~~k~~tr~~~~RI~r~Af~~A~~~~rk~VT~v~KaNVl~~t~glf~~~~~eva~~e 245 (409)
T PRK07006 169 IKFLQEE---MGVKKIRFPETSGIGIKPVSEEGTERLVRAAIQYAIDNDRKSVTLVHKGNIMKFTEGAFKDWGYQLARKE 245 (409)
T ss_pred HHHHHHH---CCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 6643322---0322223665330334662088899999999999997499958999898746000347999999999987
Q ss_pred CCCCC-------------CCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 00245-------------42320002436999999985496651-88632102326788887750753231243127987
Q gi|254780902|r 233 FKNQF-------------DELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADG 298 (412)
Q Consensus 233 ~~~~~-------------~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~ 298 (412)
|.++. .++++.++++++|++|||||++|++| ||||+|||||||||++|+|+|||||+||+|+|++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GglGl~pSanig~~- 324 (409)
T PRK07006 246 FGGELIDGGPWDKIKNPNTGKEIIVKDSIADAFLQQILLRPAEYDVIATMNLNGDYISDALAAQVGGIGIAPGANINDG- 324 (409)
T ss_pred HCCCCCCCCCHHHCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCC-
T ss_conf 2311145421111035555784698557999999999639645547987552058899999986177423567656898-
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
Q ss_conf 51442122220345565542487755472799999999999863025730389999999999999998798163230015
Q gi|254780902|r 299 KTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLI 378 (412)
Q Consensus 299 ~~~mfEp~HGSAPd~~g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~ 378 (412)
++||||+|||||| |||||+| ||+|||||++|||+||| +.++|++|++||.+|+++|++|+||.+..
T Consensus 325 -~amfEpvHGSAPd-----iAGk~iA-NP~A~ILS~amML~~lg-------~~~~A~~I~~AV~~vl~~g~~T~Dl~~~~ 390 (409)
T PRK07006 325 -HAIFEATHGTAPK-----YAGLDKV-NPGSVILSAEMMLRHMG-------WTEAADLIIKSMEKAIASKTVTYDFARLM 390 (409)
T ss_pred -CEEEECCCCCHHH-----HCCCCCC-CHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCCHHHHCC
T ss_conf -6688658886166-----5699875-90999999999999869-------97899999999999998598132022146
Q ss_pred CCCCCCEEHHHHHHHHHHHH
Q ss_conf 78887130999999999999
Q gi|254780902|r 379 GPEQDWLSTTDFIEKISDNL 398 (412)
Q Consensus 379 ~~~~~~~~T~ef~daI~~~l 398 (412)
+..+.++|+||+|||+++|
T Consensus 391 -~g~~~~~T~E~~daIi~~l 409 (409)
T PRK07006 391 -EGATEVKCSEFGDALIKNM 409 (409)
T ss_pred -CCCCCCCHHHHHHHHHHCC
T ss_conf -8996347899999999649
No 11
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=759.17 Aligned_cols=330 Identities=20% Similarity=0.220 Sum_probs=300.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCC
Q ss_conf 13867997598630899999999984179984489982748998652862778999999865938872644898544321
Q gi|254780902|r 6 VTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKE 85 (412)
Q Consensus 6 m~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~~ 85 (412)
|+++|++||||||||||++++++||++..++++|+++++|+++|+++|+++|+++++++++++++||||+++|.+
T Consensus 1 M~~kI~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~G~~~~~~~G~~lp~etl~~~~~~da~L~G~v~~P~~----- 75 (334)
T PRK08997 1 MKRTITVIPGDGIGPSIIDSTLKILDKLGCDFEYEFADAGLTALEKHGELLPQRTLDLIEKNRIALKGPLTTPVG----- 75 (334)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCC-----
T ss_conf 972599989784029999999999997098948999826699999549937899999998579780588668989-----
Q ss_pred CCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCC-CCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCCCCE
Q ss_conf 12442211045898973296688305880487877888-77867998505666300101477788459999954888610
Q gi|254780902|r 86 FNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPG-WKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTI 164 (412)
Q Consensus 86 ~~l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~~~-~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~g~~~ 164 (412)
++++|+|+.||++||||+|+||+ +++|+..++ .++|++||||||||+|+|.++....++
T Consensus 76 ----~~~~s~~l~LRk~ldLyaNiRP~--~~~pg~~~~~~~iD~vIvREntEG~Y~g~~~~~~~~~-------------- 135 (334)
T PRK08997 76 ----EGFTSINVTLRKKFDLYANVRPV--LSFPGTKARYDNIDIITVRENTEGMYSGLGQTVSEDG-------------- 135 (334)
T ss_pred ----CCCCCCCHHHHHHCCCEEEEEEE--EECCCCCCCCCCCCEEEEEECCCCCCCCCCEEECCCC--------------
T ss_conf ----99677235789866981787987--6048862655785779999678852016763663799--------------
Q ss_pred EEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCC-CCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 25541246653010111051468899999999998659-98999974267775108999999999863100245423200
Q gi|254780902|r 165 EKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQ-LPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGIT 243 (412)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~-~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i~ 243 (412)
+.+..++.+|+++++||+|+||+||++|+ +|||++||+|||+.|+|+|++++++|+++ ||+|+
T Consensus 136 ---------~~a~~~~~~tr~~~~Ri~r~AF~~A~~~~rk~Vt~v~KaNvl~~~~glf~~~~~eva~~-------yP~i~ 199 (334)
T PRK08997 136 ---------ETAEATSIITRQGAERIVRFAYELARKEGRKKVTAVHKANIMKSTSGLFLKVAREVALR-------YPDIE 199 (334)
T ss_pred ---------CEEEEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHH-------CCCCE
T ss_conf ---------77999899657776379999999999639983589984431132578999999999865-------68865
Q ss_pred HHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 02436999999985496651-88632102326788887750753231243127987514421222203455655424877
Q gi|254780902|r 244 YTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKE 322 (412)
Q Consensus 244 ~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~ 322 (412)
++|++||++|||||++|++| ||||+|||||||||++|+|+|||||+||+|+|++ .+||||+|||||| |||||
T Consensus 200 ~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDIlSDlaa~l~GglGl~psanig~~--~a~fEp~HGsApd-----iaGk~ 272 (334)
T PRK08997 200 FEEMIVDATCMQLVMNPEQFDVIVTTNLFGDILSDLCAGLVGGLGMAPGANIGRD--AAIFEAVHGSAPD-----IAGKN 272 (334)
T ss_pred EEEEEHHHHHHHHHCCHHHCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CEEEECCCCCCHH-----HCCCC
T ss_conf 8987699999999619343766621545677888899886076445665344898--6476438887254-----46998
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHCCCCCCCCEEHHHHHHHHHHHH
Q ss_conf 55472799999999999863025730389999999999999998798-16323001578887130999999999999
Q gi|254780902|r 323 TSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGF-MTKDLALLIGPEQDWLSTTDFIEKISDNL 398 (412)
Q Consensus 323 iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~-~T~DLg~~~~~~~~~~~T~ef~daI~~~l 398 (412)
+| ||+|||||++||||||| ++++|++|++||.+++++|. +|+||| |.+||+||+|||+++|
T Consensus 273 iA-NP~a~IlS~amML~~lg-------~~~~A~~i~~Av~~~l~~g~~~T~Dlg-------G~~~T~e~~~aIi~~l 334 (334)
T PRK08997 273 LA-NPTSVILAAIQMLEYLG-------MPDKAERIRKAIVAVIEAGDRTTRDLG-------GTHGTTDFTQAVIERL 334 (334)
T ss_pred CC-CCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCCCCCC-------CCCCHHHHHHHHHHCC
T ss_conf 75-95999999999999869-------978999999999999985992373259-------9977899999999659
No 12
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=752.98 Aligned_cols=338 Identities=16% Similarity=0.148 Sum_probs=299.1
Q ss_pred CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC---CCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCC
Q ss_conf 974011386799759863089999999998417---99844899827489986528627789999998659388726448
Q gi|254780902|r 1 MKKIKVTKPVVSLDGDEMTRIIWQLIQENLIHP---YLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATIT 77 (412)
Q Consensus 1 m~Kikm~~~Iv~l~GDgiG~Ei~~~~l~vl~~~---~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~t 77 (412)
|.| +.+|++|||||||||||+++++||++. .++++|+++++|+++|++||+++|++++++++++|++||||+++
T Consensus 1 M~k---~~kI~vipGDGIGPEV~~~a~~Vl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lp~~tl~~~k~~daiL~Gavg~ 77 (345)
T PRK03437 1 MAK---TMKLAVIPGDGIGPEVVAEALKVLDAVAPGGVKVEKTEYDLGARRYLATGEILPDSVLAELRQHDAILLGAIGD 77 (345)
T ss_pred CCC---CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHCCCCCHHHHHHHHHCCCEEEEECCC
T ss_conf 997---40799978687359999999999999861698569999953199999759908999999998479579962389
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCC-CCCCCEEEEECCCCCCCCCCEEEECCCCEEEEE
Q ss_conf 98544321124422110458989732966883058-8048787788-877867998505666300101477788459999
Q gi|254780902|r 78 ADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIP-GWKKPIIIGRHAFGDQYRATDFQFPSKGKLILK 155 (412)
Q Consensus 78 P~~~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~-~~~~divivREnteg~Y~gie~~~~~~~~~~i~ 155 (412)
|.++. +...+++|++||+.||||+|+||. .+++++.+.+ +.++|+|||||||||+|+|.++....+
T Consensus 78 p~~~~------g~~~~~~ll~LRk~ldLyaNvRP~k~~pg~~spl~~~~~iD~vIvREnTeG~Y~g~~~~~~~~------ 145 (345)
T PRK03437 78 PSVPS------GVLERGLLLRLRFELDHHVNLRPSKLYPGVTSPLAGPPDIDFVVVREGTEGPYTGNGGALRVG------ 145 (345)
T ss_pred CCCCC------CCCCCHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEECCCCEEECC------
T ss_conf 98998------766501678788861662456887513788775568877448999747786330554114338------
Q ss_pred EECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 95488861025541246653010111051468899999999998659989999742677751089999999998631002
Q gi|254780902|r 156 FVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKN 235 (412)
Q Consensus 156 ~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~ 235 (412)
...+.+..++.+|+.+++||+|+||+||++|++|||+|||+||||.++|||+++++||+++
T Consensus 146 ---------------~~~~~a~~~~~~Tr~~~eRI~r~Af~~A~~rrkkvt~v~KaNVl~~s~glf~~~~~eva~~---- 206 (345)
T PRK03437 146 ---------------TPHEVATEVSVNTAFGVERVVRDAFERAQKRRKHLTLVHKTNVLTFAGDLWQRTVDEVAAE---- 206 (345)
T ss_pred ---------------CCCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH----
T ss_conf ---------------8872279999741898899999999999963895689967722777788999999998614----
Q ss_pred CCCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCC-EEEECCCCCCHHHH
Q ss_conf 4542320002436999999985496651-886321023267888877507532312431279875-14421222203455
Q gi|254780902|r 236 QFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGK-TMETEAAHGTVTRH 313 (412)
Q Consensus 236 ~~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~-~~mfEp~HGSAPd~ 313 (412)
||+|+++|+||||+|||||++|++| ||||+|||||||||++|+|+||||++||+||+++|. ++||||+||||||
T Consensus 207 ---yp~v~~~~~~vD~~a~~lv~~P~~fDVivt~NlfGDIlSD~aa~l~GglGl~psani~~~g~~~~~fEpvHGSAPd- 282 (345)
T PRK03437 207 ---YPDVEVDYQHVDAATIFMVTDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNINPTGTNPSMFEPVHGSAPD- 282 (345)
T ss_pred ---CCCCEEEEEEHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCHH-
T ss_conf ---5884577624868999972296538567335642258888888851764347666306678753354536686555-
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEHHHHHHH
Q ss_conf 65542487755472799999999999863025730389999999999999998798163230015788871309999999
Q gi|254780902|r 314 YRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEK 393 (412)
Q Consensus 314 ~g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~T~ef~da 393 (412)
|||||+| ||+|||||++|||+|+| +.++|++|++||.++|+ |+|+| |.+||+||+||
T Consensus 283 ----iAGk~iA-NP~a~IlS~amML~~lg-------~~~~A~~I~~AV~~~l~----~~d~g-------g~~sT~e~~da 339 (345)
T PRK03437 283 ----IAGQGIA-DPTAAILSVALLLDHLG-------EEDAAARIEAAVEADLA----TRAGS-------EGRSTAEVGDR 339 (345)
T ss_pred ----HCCCCCC-CCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHH----CCCCC-------CCCCHHHHHHH
T ss_conf ----5699875-91999999999999869-------97899999999999985----67899-------98388999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780902|r 394 ISDNLR 399 (412)
Q Consensus 394 I~~~l~ 399 (412)
|+++|.
T Consensus 340 v~~~la 345 (345)
T PRK03437 340 IAAALA 345 (345)
T ss_pred HHHHHC
T ss_conf 999639
No 13
>PRK08194 tartrate dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=747.82 Aligned_cols=341 Identities=17% Similarity=0.144 Sum_probs=304.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCC-----CCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 386799759863089999999998417-----998448998274899865286277899999986593887264489854
Q gi|254780902|r 7 TKPVVSLDGDEMTRIIWQLIQENLIHP-----YLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQA 81 (412)
Q Consensus 7 ~~~Iv~l~GDgiG~Ei~~~~l~vl~~~-----~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~ 81 (412)
+.+|++|||||||||||.++++||++. .++++|.++++|.++|+++|+++|+++++++++++++||||+++|.+.
T Consensus 3 ~~~I~vipGDGIGpEV~~~~~~Vl~a~~~~~~~~~~e~~~~~~g~~~~~~~G~~~p~~t~~~~~~~dail~Gavg~p~~~ 82 (352)
T PRK08194 3 NFNIAVIPGDGVGKEVVPAALRVLKAVAEVHGGLSFEFTEFPWSCEYYLEHGEMMPEDGLEQLKEFDAIFLGAVGNPKLV 82 (352)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHCCCCCHHHHHHHHHCCCEEECCCCCCCCC
T ss_conf 74698988787419999999999999998737985699997112888997698188999999984586577666897647
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCC-CCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECC
Q ss_conf 4321124422110458989732966883058-8048787788-8778679985056663001014777884599999548
Q gi|254780902|r 82 RVKEFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIP-GWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGD 159 (412)
Q Consensus 82 ~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~-~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~ 159 (412)
. -+...+|+|++|||.||||+|+||+ .+++++.+.. +.++|+|||||||||+|++.++....+
T Consensus 83 p-----~~~~~~~~ll~LRk~ldLyaniRP~k~~~g~~sp~~~~~~iDivivREnteG~Y~~~~~~~~~~---------- 147 (352)
T PRK08194 83 P-----DHISLWGLLIKIRREFEQVINIRPAKQLRGIKSPLANPKDFDLLVVRENSEGEYSEVGGRIHRG---------- 147 (352)
T ss_pred C-----CCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCEEECCCCCEEEEC----------
T ss_conf 8-----8766022379999971870477654134788886678666767997056522652678637648----------
Q ss_pred CCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 88610255412466530101110514688999999999986599899997426777510899999999986310024542
Q gi|254780902|r 160 DGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDE 239 (412)
Q Consensus 160 ~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~ 239 (412)
..+.+..++.+|+.+++||+|+||+||++|+++||++||+|||+.|++||+++++|++++ |
T Consensus 148 ------------~~~~a~~~~~~Tr~~~eRi~r~Af~~A~~rrk~vt~v~KaNi~~~t~~lf~~~~~eva~~-------y 208 (352)
T PRK08194 148 ------------EDEIAIQNAVFTRKGTERAMRYAFELAAKRRKHVTSATKSNGIVYTMPFWDEVFQEVGKD-------Y 208 (352)
T ss_pred ------------CCCEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHH-------C
T ss_conf ------------983599967730999999999999998647985366505456662799999999999987-------5
Q ss_pred CCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCC-EEEECCCCCCHHHHHHHH
Q ss_conf 320002436999999985496651-886321023267888877507532312431279875-144212222034556554
Q gi|254780902|r 240 LGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGK-TMETEAAHGTVTRHYRQH 317 (412)
Q Consensus 240 ~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~-~~mfEp~HGSAPd~~g~~ 317 (412)
|+|+++++|||++|||||++|++| ||||+|||||||||++|+|+||||++||+|||++|. ++||||+||||||
T Consensus 209 p~v~~~~~~vD~~~~~lv~~P~~fDVivt~Nl~GDIlSD~aa~l~GglGl~psani~~~g~~~a~fEp~HGSApd----- 283 (352)
T PRK08194 209 PEVEADSQHIDALAAFFVTRPEEFDVIVASNLFGDILTDIGAAIMGSIGIAPAANINVNGKYPSMFEPVHGSAPD----- 283 (352)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCEECCCCCCCEEECCCCCCCHH-----
T ss_conf 523455776999999755299656889877810778888998853874446655066788843120244576332-----
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEHHHHHHHHHHH
Q ss_conf 24877554727999999999998630257303899999999999999987981632300157888713099999999999
Q gi|254780902|r 318 QQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKISDN 397 (412)
Q Consensus 318 iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~T~ef~daI~~~ 397 (412)
|||||+| ||+|||||++|||+|+| +.++|++|++||.+++++|++|+||| |.+||+||+|+|+++
T Consensus 284 iAGk~ia-NP~a~IlS~amML~~lg-------~~~~a~~i~~Av~~~~~~g~~T~DlG-------G~~sT~e~~~~ii~~ 348 (352)
T PRK08194 284 IAGKGIA-NPIGQIWTAKLMLDHFG-------EEELGARLLDVIEDVTADGIRTPDIG-------GRATTDEVTDEIIKR 348 (352)
T ss_pred HCCCCCC-CCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCCCCC-------CCCCHHHHHHHHHHH
T ss_conf 2799975-94999999999999869-------97899999999999997699676569-------997889999999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780902|r 398 LRDA 401 (412)
Q Consensus 398 l~~~ 401 (412)
|+++
T Consensus 349 l~k~ 352 (352)
T PRK08194 349 LRKR 352 (352)
T ss_pred HHCC
T ss_conf 7229
No 14
>pfam00180 Iso_dh Isocitrate/isopropylmalate dehydrogenase.
Probab=100.00 E-value=0 Score=725.74 Aligned_cols=336 Identities=22% Similarity=0.219 Sum_probs=290.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCC----CCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCC
Q ss_conf 6799759863089999999998417----998448998274899865286277899999986593887264489854432
Q gi|254780902|r 9 PVVSLDGDEMTRIIWQLIQENLIHP----YLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVK 84 (412)
Q Consensus 9 ~Iv~l~GDgiG~Ei~~~~l~vl~~~----~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~ 84 (412)
+|.+||||||||||++++++++++. +++++|+++++|.++|++||+++|+++++++++++++||||++||.++...
T Consensus 1 KIavIpGDGIGpEV~~a~~~Vl~a~~~~~g~~ie~~~~~~G~~~~~~~G~~lp~~t~~~~~~~dail~Gavg~p~~~~~~ 80 (349)
T pfam00180 1 KIAVLPGDGIGPEVTEAALKVLKAALEKAPLEFEFEEGLAGGAAIDETGTPLPEETLEACKKADAVLLGAVGGPKWDPGG 80 (349)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCC
T ss_conf 97898988622999999999999997552987699999445999985299088999999996791799773588888878
Q ss_pred CCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCC--CCCCC---CCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEEC
Q ss_conf 1124422110458989732966883058-80487--87788---877867998505666300101477788459999954
Q gi|254780902|r 85 EFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNV--PRLIP---GWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVG 158 (412)
Q Consensus 85 ~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~--p~~~~---~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~ 158 (412)
....++++.||+.||||+|+||+ .++++ +.+.+ +.++|+|||||||||+|+|+|+.....+
T Consensus 81 -----~~~~~~l~~lR~~ldlyanvRP~~~~~g~~~~spl~~~~~~~iD~vivREntEG~Y~g~e~~~~~~~-------- 147 (349)
T pfam00180 81 -----VRPENGLLALRKELDLFANLRPVKVFPSLGDASPLKREVVEGVDIVIVRELTGGIYFGIPKGIKGSG-------- 147 (349)
T ss_pred -----CCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEECCCCEECCCC--------
T ss_conf -----6650278999984297798763002466567889877787885089997345856405554025888--------
Q ss_pred CCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHC-CCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8886102554124665301011105146889999999999865-998999974267775108999999999863100245
Q gi|254780902|r 159 DDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALAR-QLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQF 237 (412)
Q Consensus 159 ~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~-~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~ 237 (412)
...+.+..++.+|+.+++||+|+||+||++| +++||++||+||||.++ +|++++.++++++|+
T Consensus 148 ------------~~~~~a~~~~~~Tr~~~~Riar~AF~~A~~r~r~~Vt~v~KaNvl~~~~-~~~~~~~e~~~~~yp--- 211 (349)
T pfam00180 148 ------------FGEEVAVDTKLYSRDEIERIARVAFELARKRGRKKVTSVDKANVLKSSR-LWREIVEEVAKEEYP--- 211 (349)
T ss_pred ------------CCCEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHHHCC---
T ss_conf ------------8750799987567899999999999999866997299973587431006-889999999997678---
Q ss_pred CCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHH
Q ss_conf 42320002436999999985496651-88632102326788887750753231243127987514421222203455655
Q gi|254780902|r 238 DELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQ 316 (412)
Q Consensus 238 ~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~ 316 (412)
+|+++++|||++|||||++|++| ||||+|||||||||++|+++||||++||+|+|+++ ++||||+||||||
T Consensus 212 ---~I~~~~~~vDa~~~~lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGlaps~nig~~~-~a~fEp~HGSApd---- 283 (349)
T pfam00180 212 ---DVELEHMLVDNAAMQLVKNPKQFDVIVTENLFGDILSDEASMLTGSLGMLPSASLGASG-FALFEPVHGSAPD---- 283 (349)
T ss_pred ---CCCEEEECHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC-CEEEECCCCCHHH----
T ss_conf ---85156500769999982196668766306620468888888853863235534258976-1356335686054----
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEHHHHHHHH
Q ss_conf 424877554727999999999998-630257303899999999999999987981632300157888713099999999
Q gi|254780902|r 317 HQQGKETSTNSIASIFAWTRGLLH-RAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKI 394 (412)
Q Consensus 317 ~iaGk~iA~NP~a~IlS~ammL~h-lg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~T~ef~daI 394 (412)
|||||+| ||+|||||++|||+| +| +.++|++|++||.+++++|++|+|||+. ...++|+||+|||
T Consensus 284 -iaGk~iA-NP~a~Ils~amML~h~lg-------~~~~A~~I~~Av~~vl~~g~~T~DlgG~----a~~~~T~e~~daI 349 (349)
T pfam00180 284 -IAGKGKA-NPIATILSAAMMLRHSLG-------LEDEADKIEAAVLKVLEAGIRTGDLGGN----ATYVSTSEFGDAV 349 (349)
T ss_pred -HCCCCCC-CCHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCCCCCCC----CCCCCHHHHHHHC
T ss_conf -3699876-949999999999985569-------8689999999999999779958132899----9828889998539
No 15
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=0 Score=704.53 Aligned_cols=365 Identities=33% Similarity=0.438 Sum_probs=329.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHHH----CCC---CCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 67997598630899999999984----179---98448998274899865286277899999986593887264489854
Q gi|254780902|r 9 PVVSLDGDEMTRIIWQLIQENLI----HPY---LDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQA 81 (412)
Q Consensus 9 ~Iv~l~GDgiG~Ei~~~~l~vl~----~~~---~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~ 81 (412)
.|-+++|||||+||++.+.++++ .++ .+|+|.++++|.+++++||++||+|+++++++++|++|||++||
T Consensus 20 iiP~IegDgiG~eit~~~~kvi~aav~k~Y~g~~~I~w~e~~aG~ka~d~tg~~lp~etl~aikky~VaiKgpl~TP--- 96 (407)
T COG0538 20 IIPFIEGDGIGDEITRAIWKVIDAAVEKAYGGERKIEWKEVDAGEKARDKTGDQLPIETLEAIKKYGVAIKGPLTTP--- 96 (407)
T ss_pred CCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHCCCCCHHHHHHHHHHCEEEECCCCCC---
T ss_conf 41358468775778999999999999863277622589998446178786467477999999998387731466676---
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEE-CCCCCCCCC-CCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECC
Q ss_conf 432112442211045898973296688305880-487877888-778679985056663001014777884599999548
Q gi|254780902|r 82 RVKEFNLKKMWKSPNGTIRNILGGIIFREPIIC-SNVPRLIPG-WKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGD 159 (412)
Q Consensus 82 ~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~~~-~~~p~~~~~-~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~ 159 (412)
++++|||||++|||.||||+|+||+.+ +++|+++++ |+.|+||+||||||+|.|+||..+++++..++++++
T Consensus 97 ------vg~g~rSlNvtlRq~Ldly~~~rPv~y~~gvPspvk~pe~~dmVIfRenteDiYagiE~~~~s~~a~kl~~fl~ 170 (407)
T COG0538 97 ------VGKGWRSLNVTLRQILDLYVFRRPVRYFPGVPSPVKRPEKVDMVIFRENTEDIYAGIEWKAGSPEALKLIFFLE 170 (407)
T ss_pred ------CCCCCCCCHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCHHHEEEECCCCCHHHHHHHHHH
T ss_conf ------54451483199998728667632289238989888984437879984155362212440269920455664540
Q ss_pred CCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHH------
Q ss_conf 88610255412466530101110514688999999999986599-89999742677751089999999998631------
Q gi|254780902|r 160 DGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL-PLYLSTKDTILKSYDGRFKNIFNEIFEAE------ 232 (412)
Q Consensus 160 ~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~-kvt~v~KaNVlk~tdglf~~~~~eva~~~------ 232 (412)
++.. +.....++...+....++.+++.|++|.||+||..++| .||++||.||||+|||.|++|++||+.++
T Consensus 171 ~e~~--~~~i~~pe~~GIgikp~s~~~s~Rlvr~ai~yAi~~~r~~VtlvhKgnImK~teGaFkdw~yeva~~~ef~~~~ 248 (407)
T COG0538 171 DEMG--VKKIRFPEDSGIGIKPISKEGSIRLVRAAIEYAIENKRKSVTLVHKGNIMKFTEGAFKDWGYEVAEEEEFGDEV 248 (407)
T ss_pred CCCC--CCEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEECCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 3467--52486678870478843703159999999999997599538999458042211336778999986520034321
Q ss_pred --CCCCCCCCC----EEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECC
Q ss_conf --002454232----0002436999999985496651-886321023267888877507532312431279875144212
Q gi|254780902|r 233 --FKNQFDELG----ITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEA 305 (412)
Q Consensus 233 --~~~~~~~~~----i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp 305 (412)
+..++...+ |.++|+++|+|.+|++++|..| ||+|+||+||++||.+|+++||||++||+||| + .+++|||
T Consensus 249 ~~~~~~~~~~~~~gkI~~~driaD~mlqQil~r~~eydViA~~NlnGDy~SDa~Aa~vGglGi~pgani~-~-~~~~fEA 326 (407)
T COG0538 249 VTGKEKFELKGPKGKIVYKDRIADDMLQQILLRPGEYDVIATKNLNGDYISDALAAQVGGLGLAPGANIG-D-GTAEFEA 326 (407)
T ss_pred CCCCHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEC-C-CEEEEEE
T ss_conf 1454545412777649984234899999996298774499963678647878999753876513531326-8-5599972
Q ss_pred CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCE
Q ss_conf 22203455655424877554727999999999998630257303899999999999999987981632300157888713
Q gi|254780902|r 306 AHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWL 385 (412)
Q Consensus 306 ~HGSAPd~~g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~ 385 (412)
+|||||+| |||+.. ||+|.|||+.|||+|+| |.++|+.|+.|+.+|+++|++|+||++.+++....+
T Consensus 327 ~HGTapk~-----aG~~~~-Np~a~Ils~~~ml~~~G-------w~eaa~li~~a~~~ti~~~~vT~Dlarl~~~~~~~v 393 (407)
T COG0538 327 THGTAPKY-----AGKDST-NPIASILSGTMMLRHRG-------WLEAADLIEKAVEDTIESGKVTYDLARLMGGAKRYL 393 (407)
T ss_pred CCCCCCCC-----CCCCCC-CCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCEEHHHHHHHCCCCCCC
T ss_conf 36765000-----676777-83899999999999853-------133388999999999981842088897608775510
Q ss_pred EHHHHHHHHHHHHH
Q ss_conf 09999999999999
Q gi|254780902|r 386 STTDFIEKISDNLR 399 (412)
Q Consensus 386 ~T~ef~daI~~~l~ 399 (412)
+|+||+|+|++||+
T Consensus 394 ~tsEF~d~ii~~l~ 407 (407)
T COG0538 394 STSEFADAIIENLK 407 (407)
T ss_pred CHHHHHHHHHHHCC
T ss_conf 08899999997529
No 16
>KOG0785 consensus
Probab=100.00 E-value=0 Score=708.04 Aligned_cols=325 Identities=22% Similarity=0.327 Sum_probs=300.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 67997598630899999999984179984489982748998652862778999999865938872644898544321124
Q gi|254780902|r 9 PVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKEFNL 88 (412)
Q Consensus 9 ~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~~~~l 88 (412)
++..+|||||||||+++++++|.++.++|+|++.|++...--.++..+|++++|++++++++||||+.|| +
T Consensus 37 ~vtLIpGDGIGpEi~~av~kvf~aak~pIewd~~dv~~~~~~~~~~~ip~~~~esl~~nkvgLkGp~~tP---------i 107 (365)
T KOG0785 37 TVTLIPGDGIGPEISPAVKKVFEAAKVPIEWDFIDVTPIKGPFGGKAIPDEAVESLRKNKVGLKGPVATP---------I 107 (365)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC---------C
T ss_conf 8998458887777899999998731898502555312312588875289899999986411234765686---------4
Q ss_pred CCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCC-CEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCCCCEEEE
Q ss_conf 42211045898973296688305880487877888778-67998505666300101477788459999954888610255
Q gi|254780902|r 89 KKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPGWKK-PIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKE 167 (412)
Q Consensus 89 ~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~~~~~~-divivREnteg~Y~gie~~~~~~~~~~i~~~~~~g~~~~~~ 167 (412)
+++++|+|++|||+|+||+|+|| |+++++...+|+. |+|++||||||+|+|+|+.+.++..+.++
T Consensus 108 ~kgh~S~nl~LRK~f~LyANVRP--c~SieG~Kt~Y~~vD~V~IRENTEgeYsgiEh~vvpGVvqsiK------------ 173 (365)
T KOG0785 108 GKGHRSLNLALRKEFGLYANVRP--CKSIEGYKTPYDDVDLVIIRENTEGEYSGIEHQVVPGVVQSIK------------ 173 (365)
T ss_pred CCCCCCHHHHHHHHHCHHCCCEE--CCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEECCCCHHHHHH------------
T ss_conf 44665687899987230201100--0244577678887108998337765313500003601999999------------
Q ss_pred EECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHH
Q ss_conf 412466530101110514688999999999986599-8999974267775108999999999863100245423200024
Q gi|254780902|r 168 VFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL-PLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYTH 246 (412)
Q Consensus 168 ~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~-kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i~~~~ 246 (412)
..|+.+++||++|||+||++++| ++|.+||+|||+.+||||+++++|++++ |++|.+++
T Consensus 174 -------------~IT~~AS~Ria~~AF~yAr~~~R~~vtvvHKaNImr~tDGLFle~cre~a~~-------y~dI~~eE 233 (365)
T KOG0785 174 -------------LITEAASRRIAEYAFEYARQNGRKRVTVVHKANIMRMTDGLFLECCREVAKK-------YPDIKFEE 233 (365)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHCCHHHHHHHHHHHHH-------CCCCCHHH
T ss_conf -------------9989999999999999999728872689852003323202799999987620-------78632258
Q ss_pred HHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 36999999985496651-88632102326788887750753231243127987514421222203455655424877554
Q gi|254780902|r 247 RLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETST 325 (412)
Q Consensus 247 ~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~ 325 (412)
+|+|+||++|+++|..| |+|+||||||||||+||+|+||||+.||+|+| ++ .++|||+|||||| ||||++|
T Consensus 234 ~~lDt~~l~lv~~P~~~DVlV~PNLYGDIlSD~~agLvGgLGltPS~NiG-~g-~~~~e~vHGsAPD-----IAGkdlA- 305 (365)
T KOG0785 234 QYLDTCCLKLVRNPSCFDVLVMPNLYGDILSDLCAGLVGGLGLTPSANIG-DG-IVIFEAVHGSAPD-----IAGKDLA- 305 (365)
T ss_pred HHHHHHHHHHHCCCHHCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCC-CC-EEEEECCCCCCCC-----CCCCCCC-
T ss_conf 88988999996484102279614202779988877750676668776347-87-1662001478833-----2368767-
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHCCCCCCCCEEHHHHHHHHHHHH
Q ss_conf 7279999999999986302573038999999999999999879-816323001578887130999999999999
Q gi|254780902|r 326 NSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDG-FMTKDLALLIGPEQDWLSTTDFIEKISDNL 398 (412)
Q Consensus 326 NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G-~~T~DLg~~~~~~~~~~~T~ef~daI~~~l 398 (412)
||+|++||++||||||+ ++++|+.|+.|+.+++.+| ++|+||| |.++|+||++|||++|
T Consensus 306 NPtAlllS~vmMLrhm~-------l~~~A~~I~~Av~~ti~eg~~rT~DLG-------Gka~~seft~aVc~~l 365 (365)
T KOG0785 306 NPTALLLSAVMMLRHMG-------LNDQADQIESAVFKTIAEGKIRTPDLG-------GKATTSEFTDAVCDRL 365 (365)
T ss_pred CCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCCCCCC-------CCCCCHHHHHHHHHCC
T ss_conf 84799999999999718-------066899999999999862673476668-------8756057899998319
No 17
>TIGR02089 TTC tartrate dehydrogenase; InterPro: IPR011829 Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate . These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in IPR004429 from INTERPRO and IPR011828 from INTERPRO, respectively.; GO: 0009027 tartrate dehydrogenase activity, 0051287 NAD binding.
Probab=100.00 E-value=0 Score=704.50 Aligned_cols=337 Identities=18% Similarity=0.198 Sum_probs=306.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHC----CC-CCCEEEEEECC-HHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCC
Q ss_conf 38679975986308999999999841----79-98448998274-89986528627789999998659388726448985
Q gi|254780902|r 7 TKPVVSLDGDEMTRIIWQLIQENLIH----PY-LDIKIEYFDLS-IQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQ 80 (412)
Q Consensus 7 ~~~Iv~l~GDgiG~Ei~~~~l~vl~~----~~-~~i~~e~~d~G-~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~ 80 (412)
+++|..|||||||+||++++++||.+ ++ +.|++++|||| +++|.+||...|+|-+|.+++++|+++||++-|..
T Consensus 3 ~~~IA~IPGDGIG~eV~~aa~~VL~A~a~~hG~~~l~~~~FpWSs~dYY~~hG~MMP~DG~e~l~~fdAIflGAVG~P~~ 82 (355)
T TIGR02089 3 QYRIAAIPGDGIGKEVVAAALQVLEAAAKKHGGLSLEFTEFPWSSCDYYKEHGKMMPEDGLEKLKKFDAIFLGAVGWPAL 82 (355)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCCCHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 40687514889865379999999999997419848740258986338888607788634698623757378614378020
Q ss_pred --CCCCCCCCCCCCCCHHHHHHHHCCCEEEEEE-EEECCCCCCCCC---CCCCEEEEECCCCCCCCCCEEEECCCCEEEE
Q ss_conf --4432112442211045898973296688305-880487877888---7786799850566630010147778845999
Q gi|254780902|r 81 --ARVKEFNLKKMWKSPNGTIRNILGGIIFREP-IICSNVPRLIPG---WKKPIIIGRHAFGDQYRATDFQFPSKGKLIL 154 (412)
Q Consensus 81 --~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp-~~~~~~p~~~~~---~~~divivREnteg~Y~gie~~~~~~~~~~i 154 (412)
|++..+|| + +.+||+|++|+|.|| +..++++++... -+.|++||||||||+|++++.++.++.
T Consensus 83 VPDhiSLWGl------L-lkiRr~F~qy~N~RP~k~lpGv~sPL~~~gP~D~D~~vvRENsEGEYS~~GGR~h~G~---- 151 (355)
T TIGR02089 83 VPDHISLWGL------L-LKIRREFDQYINLRPAKLLPGVTSPLKNRGPGDFDFVVVRENSEGEYSGVGGRIHRGT---- 151 (355)
T ss_pred CCCCEEEHHH------H-HHHHHHHHCEECCCCEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEECCCC----
T ss_conf 6883550524------5-4562333002202761005787872024878945589986458752027884000689----
Q ss_pred EEECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHC-CCCEEEEECHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99548886102554124665301011105146889999999999865-99899997426777510899999999986310
Q gi|254780902|r 155 KFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALAR-QLPLYLSTKDTILKSYDGRFKNIFNEIFEAEF 233 (412)
Q Consensus 155 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~-~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~ 233 (412)
..+.+.+...+||.+++||.|||||+|++| |++||+++|+|-++.+.-+|-|++.++|++
T Consensus 152 -----------------d~E~a~~~~ifTR~GveRilrFAFeLA~~RPrk~lTs~TKSNgi~~~MpfWDEv~~~~A~~-- 212 (355)
T TIGR02089 152 -----------------DEEVAIQNAIFTRKGVERILRFAFELAQKRPRKHLTSATKSNGIKHSMPFWDEVFEEVAAE-- 212 (355)
T ss_pred -----------------CCEEEEECEEEECHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH--
T ss_conf -----------------8616760213430014688899999997578644122562245431685267899999733--
Q ss_pred CCCCCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCE-EEECCCCCCHH
Q ss_conf 024542320002436999999985496651-8863210232678888775075323124312798751-44212222034
Q gi|254780902|r 234 KNQFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKT-METEAAHGTVT 311 (412)
Q Consensus 234 ~~~~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~-~mfEp~HGSAP 311 (412)
|++|+.+.++||++++++|.+|++| |||++||||||||||++++.||||+||||||++++.+ +||||||||||
T Consensus 213 -----yp~v~~d~~hiDalaa~fv~~Pe~fDviVASnLFGDILsDLg~A~~Gs~G~AP~ANInP~g~~PSmFEPVHGSAP 287 (355)
T TIGR02089 213 -----YPDVEWDSYHIDALAARFVLKPETFDVIVASNLFGDILSDLGAALMGSLGVAPSANINPEGKFPSMFEPVHGSAP 287 (355)
T ss_pred -----CCCCEEEHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf -----789524045786799886438883015660013565785367786053354656675888888851336788845
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHCCCCCCCCEEHHHH
Q ss_conf 556554248775547279999999999986302573038999999999999999879-8163230015788871309999
Q gi|254780902|r 312 RHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDG-FMTKDLALLIGPEQDWLSTTDF 390 (412)
Q Consensus 312 d~~g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G-~~T~DLg~~~~~~~~~~~T~ef 390 (412)
| |+||||| ||+|.|||++|||+|||| .++|.+|=+|+++|.++| ++|+|+| |..+|+++
T Consensus 288 D-----IaG~GIA-NPIg~iWtaa~MleHlGE-------~eaga~i~~a~E~~t~~Gti~T~D~G-------G~~~T~~v 347 (355)
T TIGR02089 288 D-----IAGKGIA-NPIGAIWTAALMLEHLGE-------KEAGAKILDAIERVTAEGTILTRDVG-------GKATTSEV 347 (355)
T ss_pred H-----HCCCCCC-CHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHCCCCCCCCCC-------CCCCHHHH
T ss_conf 1-----4057763-436899999987641146-------89999999999998716811178887-------89777789
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780902|r 391 IEKISDNL 398 (412)
Q Consensus 391 ~daI~~~l 398 (412)
|+|||+.|
T Consensus 348 T~av~~~l 355 (355)
T TIGR02089 348 TEAVCDAL 355 (355)
T ss_pred HHHHHHCC
T ss_conf 99998509
No 18
>PRK08299 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=0 Score=692.13 Aligned_cols=403 Identities=76% Similarity=1.275 Sum_probs=397.9
Q ss_pred CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCC
Q ss_conf 97401138679975986308999999999841799844899827489986528627789999998659388726448985
Q gi|254780902|r 1 MKKIKVTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQ 80 (412)
Q Consensus 1 m~Kikm~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~ 80 (412)
|.||||++|||.|.||+|+|.||+.+++.|+.|++||+++|||+|.+++|+|+++++.|+++|+|+++|++|+|++||+.
T Consensus 1 m~kIkv~~PiVeldGDEMTriiw~~IkeklI~Pyldi~~~yyDL~ie~Rd~T~DqVtidAA~Aikk~gvgvKcATITPde 80 (403)
T PRK08299 1 MAKIKVKNPVVELDGDEMTRIIWKFIKDKLILPYLDIDLEYYDLGIENRDATDDQVTIDAANAIKKYGVGVKCATITPDE 80 (403)
T ss_pred CCCEEECCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCEEEECCCCCCCH
T ss_conf 99435059869864489999999999986344514356148755770355668713699999999837244248878648
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCC
Q ss_conf 44321124422110458989732966883058804878778887786799850566630010147778845999995488
Q gi|254780902|r 81 ARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDD 160 (412)
Q Consensus 81 ~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~~~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~ 160 (412)
.++.|.+|++.|+|||+++|..||+.++|.|+.|+++|+.+++|+.||+|.|++.||+|.+.|+.++++|+.++.|++++
T Consensus 81 ~rvkEf~LKkmwkSPNGtIRnil~GTVfRepIi~~nIp~~VpgW~kPI~igRHA~GDqY~a~d~~v~g~Gkl~l~ftp~~ 160 (403)
T PRK08299 81 ARVKEFNLKKMWKSPNGTIRNILGGTVFREPIICKNVPRLVPGWTKPIVIGRHAFGDQYRATDFKVPGKGKLTLVFTGED 160 (403)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHCCCEEECCCEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCEEEEEEECCC
T ss_conf 88987532441279856787531867852657756988778898688799962237610423688458836999998899
Q ss_pred CCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 86102554124665301011105146889999999999865998999974267775108999999999863100245423
Q gi|254780902|r 161 GQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDEL 240 (412)
Q Consensus 161 g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~ 240 (412)
|++.+..++++.+.++++.|+|+.++|+.+||.+|+||+.++.++++.+|.+|+|.|||.|+++|.|++.++|+++|...
T Consensus 161 G~~~~~~v~~f~~~GVam~myN~d~SI~~fA~~~F~~al~~k~plylsTKnTIlK~YDG~FKdiFqeiyd~~yk~~F~~~ 240 (403)
T PRK08299 161 GEVIEHEVFDFPGAGVAMGMYNLDESIRDFARASFNYGLDRKYPVYLSTKNTILKAYDGRFKDIFQEVYEAEFKEKFEAA 240 (403)
T ss_pred CCEEEEEEEECCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98579999973789537886222777999999999999964897032133311276667999999999999999999877
Q ss_pred CEEHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCC
Q ss_conf 20002436999999985496651886321023267888877507532312431279875144212222034556554248
Q gi|254780902|r 241 GITYTHRLIDDMVASSIKWSGGYIWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQG 320 (412)
Q Consensus 241 ~i~~~~~~vD~~~~~lv~~P~~fVivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaG 320 (412)
+|+|+|+|||+|.||++++-+.||++|.|++||++||+.|+..|||||+.|..+++||...+|||+|||+.||+.||.+|
T Consensus 241 gi~YehrLIDdmvA~~lk~~GGfvwAckNYDGDV~SD~vAqgfGSLglMTSvLvspDG~~~e~EAAHGTVtrHyr~hqkG 320 (403)
T PRK08299 241 GITYEHRLIDDMVASALKWEGGYVWACKNYDGDVQSDTVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQHQKG 320 (403)
T ss_pred CCEEEEEEHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHEEECCCCCEEEEECCCCCHHHHHHHHHCC
T ss_conf 98389987799999997507874999627786388789998558726534216789998899874665478999998748
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEHHHHHHHHHHHHHH
Q ss_conf 77554727999999999998630257303899999999999999987981632300157888713099999999999999
Q gi|254780902|r 321 KETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKISDNLRD 400 (412)
Q Consensus 321 k~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~T~ef~daI~~~l~~ 400 (412)
+..+.||+|+|+|++-.|+|.|++|+++++..+|+.||+|+.+|+++|++|.||+...+++...++|.||.++|.+||++
T Consensus 321 ~eTStNpiasIfAwt~gL~~r~~lD~n~~l~~Fa~~Le~~~i~tve~G~mTkDLa~~~~~~~~~l~T~~Fi~~v~~~L~~ 400 (403)
T PRK08299 321 EETSTNSIASIFAWTRGLAHRGKLDGNPELVKFADTLEKVCIETVESGFMTKDLALLVGPDQKWLTTEGFLDKIDENLEK 400 (403)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHH
T ss_conf 76677820799999999998762369789999999999999999974877076798849987725099999999999987
Q ss_pred HHH
Q ss_conf 998
Q gi|254780902|r 401 ALQ 403 (412)
Q Consensus 401 ~l~ 403 (412)
+|.
T Consensus 401 ~l~ 403 (403)
T PRK08299 401 ALA 403 (403)
T ss_pred HCC
T ss_conf 519
No 19
>KOG0784 consensus
Probab=100.00 E-value=0 Score=607.96 Aligned_cols=333 Identities=23% Similarity=0.240 Sum_probs=300.1
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCC
Q ss_conf 40113867997598630899999999984179984489982748998652862778999999865938872644898544
Q gi|254780902|r 3 KIKVTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQAR 82 (412)
Q Consensus 3 Kikm~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~ 82 (412)
|.-..+++++|||||||||++..+.++|.+..+|++||++++++ -.+.++..++++++++++++++|||-+-||.
T Consensus 38 kygg~~tVTlipGdGIGpe~~~~V~~v~~a~~~PV~fE~i~v~~--~~~~~~~~~~e~v~Si~rNkValkG~i~t~~--- 112 (375)
T KOG0784 38 KYGGRHTVTLIPGDGIGPELTNAVREVFSAAHAPVEFEEIEVSG--SNKESSEDLDEAVESIKRNKVALKGNIETPD--- 112 (375)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCC--CCCCCCHHHHHHHHHHHHCCEEEEECCCCCC---
T ss_conf 46896338982799857889999999998618980589997247--7321102279999998735536850225888---
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCC-CCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCC
Q ss_conf 3211244221104589897329668830588048787788-877867998505666300101477788459999954888
Q gi|254780902|r 83 VKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIP-GWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDG 161 (412)
Q Consensus 83 ~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~~-~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~g 161 (412)
.+++..|.|+.||+.||||+| .++|+++|+..+ +.++||||+||||||+|+|.|+.++++..++++.+
T Consensus 113 -----~~g~~~s~n~~LR~~LDLyan--vv~~~slpG~~tRh~~vDiviIRENTEGEYs~LEHE~VpGVVEsLKVv---- 181 (375)
T KOG0784 113 -----LPGGAKSLNVKLRKELDLYAN--VVHCKSLPGVKTRHENVDIVIIRENTEGEYSGLEHESVPGVVESLKVV---- 181 (375)
T ss_pred -----CCCCHHHHHHHHHHHHHHHHH--EEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHEEEEE----
T ss_conf -----764234667888876535542--013302688544568954899813775432444566674632113430----
Q ss_pred CCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 610255412466530101110514688999999999986599-8999974267775108999999999863100245423
Q gi|254780902|r 162 QTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL-PLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDEL 240 (412)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~-kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~ 240 (412)
|+..++||+||||+||.+++| |||.||||||||..||||+++++||++. ||
T Consensus 182 ---------------------T~~kseRIaryAF~yA~k~gRKkVTaVHKAnimKL~DGlFle~~~eva~~-------Yp 233 (375)
T KOG0784 182 ---------------------TRFKSERIARYAFEYAKKNGRKKVTAVHKANIMKLGDGLFLESCQEVAKK-------YP 233 (375)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEECCHHHHHHHHHHHHHC-------CC
T ss_conf ---------------------26406899999999999819952788801582352406699999999860-------89
Q ss_pred CEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHC
Q ss_conf 20002436999999985496651-88632102326788887750753231243127987514421222203455655424
Q gi|254780902|r 241 GITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQ 319 (412)
Q Consensus 241 ~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~ia 319 (412)
+|+++.|+|||+|||||.+|+|| |+|+|||||.|+|.+||+|+||.|+.|++|+|++ ++.||| ..++.++.|+
T Consensus 234 ~I~~e~miVDN~~MQlvs~P~qFDvmv~pnlYgniisNiaaGlvGG~Glv~G~n~G~~--yAVFE~----g~r~~~~~~~ 307 (375)
T KOG0784 234 DITFEEMIVDNACMQLVSRPQQFDVMVMPNLYGNIISNIAAGLVGGAGLVSGANYGDD--YAVFEP----GARHTGTSIA 307 (375)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--EEEECC----CCCCCCHHHH
T ss_conf 7558886477767876438222356724578999999888774278775456534661--477516----6556425430
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHCCCCCCCCEEHHHHHHHHHHHH
Q ss_conf 8775547279999999999986302573038999999999999999879-816323001578887130999999999999
Q gi|254780902|r 320 GKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDG-FMTKDLALLIGPEQDWLSTTDFIEKISDNL 398 (412)
Q Consensus 320 Gk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G-~~T~DLg~~~~~~~~~~~T~ef~daI~~~l 398 (412)
||++| ||+|||||++|||+||| ++.+|++|+.||.+|+.+| ++|+||| |..||++|+++||.+|
T Consensus 308 g~~~a-NPtA~llss~~MLrHL~-------l~~~Ad~i~~Av~~vi~egk~rT~DlG-------G~~Tt~dvi~avI~~l 372 (375)
T KOG0784 308 GKNIA-NPTAMLLSSVDMLRHLG-------LPSHADRISTAVKRVIDEGKIRTKDLG-------GQSTTQDVIDAVIANL 372 (375)
T ss_pred CCCCC-CCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCCCCCC-------CCCCHHHHHHHHHHHH
T ss_conf 55546-81999999999998709-------867899999999999861763135468-------9764689999999872
Q ss_pred HH
Q ss_conf 99
Q gi|254780902|r 399 RD 400 (412)
Q Consensus 399 ~~ 400 (412)
+.
T Consensus 373 ~~ 374 (375)
T KOG0784 373 RC 374 (375)
T ss_pred CC
T ss_conf 06
No 20
>KOG1526 consensus
Probab=100.00 E-value=0 Score=574.02 Aligned_cols=405 Identities=69% Similarity=1.144 Sum_probs=394.5
Q ss_pred CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCC
Q ss_conf 97401138679975986308999999999841799844899827489986528627789999998659388726448985
Q gi|254780902|r 1 MKKIKVTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQ 80 (412)
Q Consensus 1 m~Kikm~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~ 80 (412)
|+|||+.+|||.+.||+|.|.||+.++++|+.|++|+++.|||+|.+++|+|+++++.|+.+|++++.|++|+++.||+.
T Consensus 12 ~~kikv~~pvVemdGDEmTRiIW~~Ik~KLIlPyldldlkyyDLgie~RD~T~DqVTid~A~A~lky~V~iKCATITPDE 91 (422)
T KOG1526 12 MSKIKVANPVVEMDGDEMTRIIWKLIKEKLILPYLDLDLKYYDLGIENRDATNDQVTIDAAEAILKYNVGIKCATITPDE 91 (422)
T ss_pred HCCEECCCCEEEECCCHHHHHHHHHHHHHCCCCEEECCEEEEECCCCCCCCCCCEEEHHHHHHHHHHCCEEEEEECCCCH
T ss_conf 10122358737624508999999999864023326302136533774445666602388899998737115885127747
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCC
Q ss_conf 44321124422110458989732966883058804878778887786799850566630010147778845999995488
Q gi|254780902|r 81 ARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDD 160 (412)
Q Consensus 81 ~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~~~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~ 160 (412)
.++.|.+|+++|+|||+++|..|++.+||.|+.|+++|..+++|..||+|-|++.+|.|...++.++++|+.++.|.+.+
T Consensus 92 aRv~Ef~LkkMWkSPNGTIRNILgGTVFREpIi~kniPrlVpgW~kPI~IGRHAfgDQYkatD~vv~~~gkl~l~f~~~d 171 (422)
T KOG1526 92 ARVEEFNLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIIIGRHAFGDQYKATDFVVPGPGKLELVFTPSD 171 (422)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHCCCEEECCCEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCEEEEEEECCC
T ss_conf 87776346877239994252313870432543227854457788676587303345510002476158976899994699
Q ss_pred CC-CEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 86-10255412466530101110514688999999999986599899997426777510899999999986310024542
Q gi|254780902|r 161 GQ-TIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDE 239 (412)
Q Consensus 161 g~-~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~ 239 (412)
|. .....++++.+.++...|.|+.+.++.+|+..|++|+.++-++++.+|-+|+|.|||.|+++|.|+....|+.+|..
T Consensus 172 g~~~~~~~V~~f~~~G~~~~m~~~dds~~~FAhssf~~Al~kk~pLylsTKNTILKkYDgrFKdiFqeiye~~yk~kfe~ 251 (422)
T KOG1526 172 GTQKVTLKVYDFKGSGVAAMMYNTDDSIRGFAHSSFQYALQKKWPLYLSTKNTILKKYDGRFKDIFQEIYEKQYKSKFEA 251 (422)
T ss_pred CCCCEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98642589886278864799874450567788999999997278636613313888706738899999998888888876
Q ss_pred CCEEHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHC
Q ss_conf 32000243699999998549665188632102326788887750753231243127987514421222203455655424
Q gi|254780902|r 240 LGITYTHRLIDDMVASSIKWSGGYIWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQ 319 (412)
Q Consensus 240 ~~i~~~~~~vD~~~~~lv~~P~~fVivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~ia 319 (412)
.+|+|||.+||+|.+|.++..+.||++|.|++||+-||..|+-.|||||+.|..+.+||+..+.||+|||+.+|+.+|..
T Consensus 252 ~~IwYEHRLIDDmVAqa~KS~GGfvwAcKNYDGDVqSD~vAQg~GSLGlMTSVLv~pdGKT~EaEAAHGTVtRHyr~hqk 331 (422)
T KOG1526 252 LGIWYEHRLIDDMVAQAMKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRMHQK 331 (422)
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCHHHHEEEEECCCCCEEEEECCCCCHHHHHHHHHC
T ss_conf 16426454378999999732796699960678742335777514620122148977899734500125511588898754
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC---CCCCCEEHHHHHHHHHH
Q ss_conf 877554727999999999998630257303899999999999999987981632300157---88871309999999999
Q gi|254780902|r 320 GKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIG---PEQDWLSTTDFIEKISD 396 (412)
Q Consensus 320 Gk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~---~~~~~~~T~ef~daI~~ 396 (412)
|+..+.||+|.|+++.--|.|.|.+|+++++..+|+.||.|+..|+++|++|.||+...+ .....++|.||.|+|.+
T Consensus 332 G~eTSTN~IASIFAWtRgl~hR~kLD~n~~l~~F~~~LE~aci~tve~G~MTKDLal~i~g~~~r~~y~~T~eFidav~~ 411 (422)
T KOG1526 332 GQETSTNSIASIFAWTRGLAHRAKLDNNEALAKFANALEKACIETVESGKMTKDLALCIHGKVERSDYLNTEEFIDAVAS 411 (422)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 78766760589999887777750367877899999999999988887362046589996588552101019999999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999873
Q gi|254780902|r 397 NLRDALQKN 405 (412)
Q Consensus 397 ~l~~~l~~~ 405 (412)
+|++.|.+.
T Consensus 412 ~L~~~~~~~ 420 (422)
T KOG1526 412 NLKKKLAQA 420 (422)
T ss_pred HHHHHHHHC
T ss_conf 999998632
No 21
>KOG0786 consensus
Probab=100.00 E-value=0 Score=531.88 Aligned_cols=338 Identities=20% Similarity=0.190 Sum_probs=291.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCC----CCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCC
Q ss_conf 386799759863089999999998417----9984489982748998652862778999999865938872644898544
Q gi|254780902|r 7 TKPVVSLDGDEMTRIIWQLIQENLIHP----YLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQAR 82 (412)
Q Consensus 7 ~~~Iv~l~GDgiG~Ei~~~~l~vl~~~----~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~ 82 (412)
.++|++||||||||||...++.||... .+.++|++..+|+.+.|.+|-++|++++++.|++|++|.|++++|+|+.
T Consensus 4 ~~~i~~lpgd~ig~ev~s~a~~vlq~~~~~~~v~fdfe~~~~ggaald~~gvplpee~~~aakksdavllgaigg~kw~~ 83 (363)
T KOG0786 4 RYNITLLPGDGIGPEVISVAKNVLQKAGSLEGVEFDFEEMPIGGAALDLVGVPLPEETLTAAKKSDAVLLGAIGGYKWDK 83 (363)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHCCCCCCCHHHHHHHHHCCEEEEECCCCCCCCC
T ss_conf 62178757888678899999999997266442010300175552000002788977887666313616761245765676
Q ss_pred C---CCCCCCCCCCCHHHHHHHHCCCEEEEEEEEEC-CCC--CCCC---CCCCCEEEEECCCCCCCCCCEEEECCCCEEE
Q ss_conf 3---21124422110458989732966883058804-878--7788---8778679985056663001014777884599
Q gi|254780902|r 83 V---KEFNLKKMWKSPNGTIRNILGGIIFREPIICS-NVP--RLIP---GWKKPIIIGRHAFGDQYRATDFQFPSKGKLI 153 (412)
Q Consensus 83 ~---~~~~l~~~~~S~n~~LR~~ldl~~~~rp~~~~-~~p--~~~~---~~~~divivREnteg~Y~gie~~~~~~~~~~ 153 (412)
. +|.++ +.+|+.|++|+|+||..+- .+- ++.+ ..+.|++||||.|+|+|||.-..-
T Consensus 84 ~~~rpe~gl--------lkirrdl~~~anlrp~~~~~~l~d~s~lk~e~a~g~d~~vvrel~ggiyfg~~r~e------- 148 (363)
T KOG0786 84 NHLRPEMGL--------LKIRRDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMVVRELTGGIYFGEPRNE------- 148 (363)
T ss_pred CCCCHHHHH--------HHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHCCCCEEEEEEECCCEEECCCCCC-------
T ss_conf 885743419--------99999888985477200047662332012777557656986430373232675567-------
Q ss_pred EEEECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCC--CCEEEEECHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9995488861025541246653010111051468899999999998659--98999974267775108999999999863
Q gi|254780902|r 154 LKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQ--LPLYLSTKDTILKSYDGRFKNIFNEIFEA 231 (412)
Q Consensus 154 i~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~--~kvt~v~KaNVlk~tdglf~~~~~eva~~ 231 (412)
+| +...+.+-.|+-.++.||+|.||+.|++|+ .++|+++|+||+. ++.|||+++.+..++
T Consensus 149 ------~g-----------~gva~dte~Y~~~Ev~RIaR~Aa~~A~~~~pp~p~~slDKANVLa-~SrLWRKtV~k~~k~ 210 (363)
T KOG0786 149 ------NG-----------EGVAFDTEIYAAHEVDRIARVAAETARKRRPPGPLCSLDKANVLA-ASRLWRKTVTKALKS 210 (363)
T ss_pred ------CC-----------CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHH
T ss_conf ------88-----------610232521207888899999999998408998720020356788-889999999999886
Q ss_pred HCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCE--EEEECCCCCHHHHHHHHHHHCCCCCCEEEECC----CCCCEEEECC
Q ss_conf 10024542320002436999999985496651--88632102326788887750753231243127----9875144212
Q gi|254780902|r 232 EFKNQFDELGITYTHRLIDDMVASSIKWSGGY--IWACKNYDGDVQSDIVAQGFGSLGLMTSVLIT----ADGKTMETEA 305 (412)
Q Consensus 232 ~~~~~~~~~~i~~~~~~vD~~~~~lv~~P~~f--Vivt~NL~GDIlSD~aa~l~GglGlapSanig----~~~~~~mfEp 305 (412)
||++ +++.|+|||+++|+||++|.+| +|+|.|+||||+||+++.+.|||||+|||+++ .+....+|||
T Consensus 211 EyP~------l~l~hqliDsAAM~LVk~P~~lng~ivT~N~FGDIiSDEASvIpGSlGlLPSASL~~v~~ee~~~gL~EP 284 (363)
T KOG0786 211 EYPD------LELSHQLIDSAAMQLVKDPKQLNGTIVTNNIFGDIISDEASVIPGSLGLLPSASLSGVVSEESGPGLFEP 284 (363)
T ss_pred HCCC------CCHHHHHHHHHHHHHHCCCHHCCCEEEECCCHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCC
T ss_conf 5898------0612555647778874490120836876330023323631235674245640221377555667740024
Q ss_pred CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCE
Q ss_conf 22203455655424877554727999999999998630257303899999999999999987981632300157888713
Q gi|254780902|r 306 AHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWL 385 (412)
Q Consensus 306 ~HGSAPd~~g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~ 385 (412)
+|||||| ||||++. ||+|+|||++|||+|-. +.++.|..||.||.+++..|.+|.||| |..
T Consensus 285 iHGSAPD-----iagk~kv-NP~aTILSAamlLkygL------n~pkeakaIEdAV~kvLd~G~rTgDlg-------g~~ 345 (363)
T KOG0786 285 IHGSAPD-----IAGKDKV-NPLATILSAAMLLKYGL------NEPKEAKAIEDAVVKVLDKGFRTGDLG-------GPG 345 (363)
T ss_pred CCCCCCC-----CCCCCCC-CHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHCCCCCCCCC-------CCC
T ss_conf 7789988-----6777766-81999999999998527------980567789999999985365125567-------887
Q ss_pred EHHHHHHHHHHHHHHHH
Q ss_conf 09999999999999999
Q gi|254780902|r 386 STTDFIEKISDNLRDAL 402 (412)
Q Consensus 386 ~T~ef~daI~~~l~~~l 402 (412)
+|.+.++++.+.+.+.|
T Consensus 346 st~~~~kav~EEv~Kil 362 (363)
T KOG0786 346 STLVGCKAVGEEVLKIL 362 (363)
T ss_pred CCHHHHHHHHHHHHHHC
T ss_conf 41055899999999741
No 22
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent; InterPro: IPR004439 Several NAD- or NADP-dependent dehydrogenases, including 3-isopropylmalate dehydrogenase, tartrate dehydrogenase, and the multimeric forms of isocitrate dehydrogenase, share a nucleotide binding domain unrelated to that of lactate dehydrogenase and its homologs. These enzymes dehydrogenate their substates at a H-C-OH site adjacent to a H-C-COOH site; the latter carbon, now adjacent to a carbonyl group, readily decarboxylates. Prokaryotic NADP-dependent isocitrate dehydrogenases (1.1.1.42 from EC) resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle.
Probab=100.00 E-value=0 Score=386.93 Aligned_cols=371 Identities=22% Similarity=0.233 Sum_probs=312.7
Q ss_pred CCCE-EEECCCCCCHHHHHHHHHHHHCC-------CCCCEEEEEECCHHHHHHHC---------CCCCHHHHHHHHHCCE
Q ss_conf 3867-99759863089999999998417-------99844899827489986528---------6277899999986593
Q gi|254780902|r 7 TKPV-VSLDGDEMTRIIWQLIQENLIHP-------YLDIKIEYFDLSIQNRDLTD---------DQVTIDAAHAIKNCGV 69 (412)
Q Consensus 7 ~~~I-v~l~GDgiG~Ei~~~~l~vl~~~-------~~~i~~e~~d~G~~~~d~tg---------~~l~~da~eaik~~~v 69 (412)
.+|| -++.|||+|+++|.+...+++++ .-.+.|.++..|..++..+| .++|.+++++++++.+
T Consensus 25 ~~p~~p~~~gdg~g~d~~p~~~~~~~~~~~~~~~g~~~~~w~~~~~g~~~~~~~g~~~~~~p~~~~lp~~~~~~~~~~~~ 104 (483)
T TIGR00183 25 NNPIIPYIEGDGIGVDVWPAALKVLDAAVEKAYKGEKKISWFEVYAGEKAYELYGDYKELSPEDEWLPADTLDAIKEYRV 104 (483)
T ss_pred CCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHCCHHHCCCCHHCCCHHHHHHHHHHHH
T ss_conf 87521012167666202467899888877753155200132211015224443032122264012043468888876311
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCCCC-CCCEEEEECCCCCCCCCCEEEEC
Q ss_conf 8872644898544321124422110458989732966883058-804878778887-78679985056663001014777
Q gi|254780902|r 70 GIKCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIPGW-KKPIIIGRHAFGDQYRATDFQFP 147 (412)
Q Consensus 70 ~lkg~~~tP~~~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~~~-~~divivREnteg~Y~gie~~~~ 147 (412)
.+|||++|| ++++++|+|+++|+.+|+|+|+||+ ++.+.|.+...+ +.|++++|||++|+|.|++|...
T Consensus 105 ~~~gpl~~p---------~ggg~~~l~~~~~~~~dl~~~~~p~~~~~g~p~p~~~p~~~~~~~~~~~~~d~~~g~~w~~g 175 (483)
T TIGR00183 105 AIKGPLTTP---------VGGGIRSLNVALRQELDLYVCLRPVRYYPGTPSPVKHPEKVDLVIFRENTEDIYAGIEWAEG 175 (483)
T ss_pred HCCCCCCCC---------CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCHHHCCCCCCCC
T ss_conf 103543444---------45531345567777765665420012037887645572202046761464112102223355
Q ss_pred CCCEEEEE-EECCCCCCEEEEEEC--CCCCCEEEEEECCHHHHHHHHHHHHHHHHHC--CC-CEEEEECHHHHHHHHHHH
Q ss_conf 88459999-954888610255412--4665301011105146889999999999865--99-899997426777510899
Q gi|254780902|r 148 SKGKLILK-FVGDDGQTIEKEVFD--SPGSGIAMAMYNLDDSIRNFARAAMQYALAR--QL-PLYLSTKDTILKSYDGRF 221 (412)
Q Consensus 148 ~~~~~~i~-~~~~~g~~~~~~~~~--~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~--~~-kvt~v~KaNVlk~tdglf 221 (412)
.+....+. |..++-......... ..-.........++.+.+|++|.+.+||..+ .+ .++++||+|+||+++|.|
T Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~g~~p~~~~g~~~l~~~~~~~~~~~p~~~~~~~~~~~g~~~~~~~g~~ 255 (483)
T TIGR00183 176 SEEAKKLIAFLKNELGVKKIRFPEKQIRLDSGIGIKPISEEGTKRLVRAAIEYAIENPKDRKSVTLVHKGNIMKFTEGAF 255 (483)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHH
T ss_conf 26789999998753033321244012000046653323213578999999998861655554156643365100000023
Q ss_pred HHHHHHHHHHHCCCCCC-------------------------------------------------------------CC
Q ss_conf 99999998631002454-------------------------------------------------------------23
Q gi|254780902|r 222 KNIFNEIFEAEFKNQFD-------------------------------------------------------------EL 240 (412)
Q Consensus 222 ~~~~~eva~~~~~~~~~-------------------------------------------------------------~~ 240 (412)
++|.++++.++|..+.- ..
T Consensus 256 ~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 335 (483)
T TIGR00183 256 RDWGYELAKKEFGAECITEREEWGPWDKLGNPDLTIEANAHLIPPGKDTLTEEKQAVIKQEVEQVLNSIWESHGNGEWKG 335 (483)
T ss_pred HHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 33225666554200120010001221113674204411210145541122345677888889999887652023200100
Q ss_pred CEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHC
Q ss_conf 20002436999999985496651-88632102326788887750753231243127987514421222203455655424
Q gi|254780902|r 241 GITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQ 319 (412)
Q Consensus 241 ~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~ia 319 (412)
.+...+.+.|+...++..+|..| |+.+.||+||++||.+++++||+|++|++|+|+....++||++||+||.| +
T Consensus 336 ~~~~~d~~~d~~~~~~~~~p~~~~~~~~~~l~gd~~~d~~~~~~gg~g~~pg~~~~~~~~~~~~~~~~g~~p~~-----~ 410 (483)
T TIGR00183 336 KIVVKDRIADAFLQQILTRPDEYDVLATLNLNGDYLSDALAALVGGLGIAPGANIGDEVGHALFEATHGTAPKY-----A 410 (483)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCC-----C
T ss_conf 01224567788899875065411033410467303355677764233236776544101122210013556210-----3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC-CCCCEEHHHHHHHHHHHH
Q ss_conf 8775547279999999999986302573038999999999999999879816323001578-887130999999999999
Q gi|254780902|r 320 GKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGP-EQDWLSTTDFIEKISDNL 398 (412)
Q Consensus 320 Gk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~-~~~~~~T~ef~daI~~~l 398 (412)
|.+. +||.+.|+++.|||+|+| |.++++.+.+++..++..+..|+|+.+.+.+ -...+.+++|++++++++
T Consensus 411 g~~~-~~p~~~~l~~~~~~~~~g-------w~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~~~~~~~~~~~~~ 482 (483)
T TIGR00183 411 GLDK-VNPGSVILSGELLLEHLG-------WKEAADLIKKGLEKAIASKVVTYDFARLMDGKVAKELKCSEFGEALVENL 482 (483)
T ss_pred CCCC-CCCHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 4334-563046667778887505-------01467898876544432010222256541641000111346788887405
Q ss_pred H
Q ss_conf 9
Q gi|254780902|r 399 R 399 (412)
Q Consensus 399 ~ 399 (412)
+
T Consensus 483 ~ 483 (483)
T TIGR00183 483 D 483 (483)
T ss_pred C
T ss_conf 9
No 23
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent; InterPro: IPR004790 Isocitrate dehydrogenase (IDH) , is an important enzyme of carbohydrate metabolism which catalyzes the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD^+ (1.1.1.41 from EC) or on NADP^+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD^+-dependent, the other NADP^+-dependent), while the third one (also NADP^+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP^+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. The eukaryotic, NADP-dependent isocitrate dehydrogenases, are defined by this group that includes the cytosolic, mitochondrial, and chloroplast enzymes, but does also hit a small number of bacterial proteins.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity.
Probab=100.00 E-value=0 Score=342.47 Aligned_cols=402 Identities=64% Similarity=1.119 Sum_probs=382.9
Q ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 74011386799759863089999999998417998448998274899865286277899999986593887264489854
Q gi|254780902|r 2 KKIKVTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQA 81 (412)
Q Consensus 2 ~Kikm~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~ 81 (412)
.||++.+|++.+.||++.+.+|..+.+.+..++++++..+||+|.+.+|.+++.++.++.+++++++++++.++.||+..
T Consensus 1 ~~~~~~~p~~~~~gd~~~~~~w~~~~~~~~~p~~~~d~~~~d~~~~~~d~~~d~~~~~~~~~~~~~~~~~~c~~~~pd~~ 80 (413)
T TIGR00127 1 SKIKVANPVVELDGDELTRIIWELIKDKLILPYLDLDLKYYDLGLEYRDATNDKVTVDAAEATLKYGVGVKCATITPDEA 80 (413)
T ss_pred CCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCHHHHCCHHEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHH
T ss_conf 94334563021165236789999865323010111000000035553333331112334556654123024441075234
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCC-
Q ss_conf 4321124422110458989732966883058804878778887786799850566630010147778845999995488-
Q gi|254780902|r 82 RVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDD- 160 (412)
Q Consensus 82 ~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~~~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~- 160 (412)
++.+..++..|+|||.++|..++..+++.|+.|+++|..+++|..++++-|+..++.|...+..++.++...+.+.+++
T Consensus 81 ~~~~~~~~~~w~~p~g~~~~~~gg~~~~~~~~~~~~p~~~~~w~~p~~~g~~~~gd~~~~~d~~~~gpg~~~~~~~p~~p 160 (413)
T TIGR00127 81 RVEEFGLKKLWKSPNGTIRNILGGTVFREPIICPNIPRLVPGWEKPIIIGRHAFGDQYKATDTVVPGPGKLELVYKPKDP 160 (413)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHCCHHHHCCHHCCCCCHHCCCCCCCEEEECCCCCCCCCCCCEEECCCCCEEEEECCCCC
T ss_conf 45553123430477730344313301102100012200112222322430212354211122010577615788703787
Q ss_pred --CCCEEEEEECCCCCC-EEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf --861025541246653-01011105146889999999999865998999974267775108999999999863100245
Q gi|254780902|r 161 --GQTIEKEVFDSPGSG-IAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQF 237 (412)
Q Consensus 161 --g~~~~~~~~~~~~~~-~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~ 237 (412)
+.......++..+.+ +...++++.+.++.+++..|+.|..++-+++..+|.++++.+||.|++++.++....|+.+|
T Consensus 161 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~dg~~~d~~~~~~~~~~~~~~ 240 (413)
T TIGR00127 161 TGGEPVDLKVYDFPGGGGVALALYNTDESIEGFAHASFELALEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAGYKSKF 240 (413)
T ss_pred CCCCCEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 76642046786225767336653044112445555445544421554000110012322044257889998753444344
Q ss_pred CCCCEEHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 42320002436999999985496651886321023267888877507532312431279875144212222034556554
Q gi|254780902|r 238 DELGITYTHRLIDDMVASSIKWSGGYIWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQH 317 (412)
Q Consensus 238 ~~~~i~~~~~~vD~~~~~lv~~P~~fVivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~ 317 (412)
...+++++|.++|.+..++++..+.|++.+.|+.||+-||..+.-.|++|++.|..+.++|.....|+.||+..+|+.++
T Consensus 241 ~~~~~w~~~~~~dd~~~~~~~~~gg~~~~~~~~dgd~~~d~~~~g~g~~g~~~~~~~~pdg~~~~~~~~~g~~~~~~~~~ 320 (413)
T TIGR00127 241 EALGIWYEHRLIDDLVAQALKSEGGFIWACKNYDGDVQSDIVAQGFGSLGLLTSVLVCPDGKTFEAEAAHGTVTRHFRKY 320 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCHHHHEEEEECCCCCCCCCHHCCCHHHHHHHHH
T ss_conf 55311234556678899886326864898506676300012330233000000124446874100000011134445543
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHCCCCC-----CCCEEHHHHH
Q ss_conf 24877554727999999999998630257303899999999999999987-98163230015788-----8713099999
Q gi|254780902|r 318 QQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVED-GFMTKDLALLIGPE-----QDWLSTTDFI 391 (412)
Q Consensus 318 iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~-G~~T~DLg~~~~~~-----~~~~~T~ef~ 391 (412)
-.|+....||++.++++..-|-|.+++|+++.+..++..++.++..++++ |.+|.||+...+.. ...++|.+|.
T Consensus 321 ~~g~~~~~~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~p~~~~~~~~~~~~~~ 400 (413)
T TIGR00127 321 QKGGETSTNSIASIFAWTRGLAHRGKLDNNPELLKFANILESACLNTVEEDGILTKDLALILGGSPNLERSAYLNTEEFL 400 (413)
T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 13553332103555554443443202466235788877776666433320342134478874277552123320158888
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999998
Q gi|254780902|r 392 EKISDNLRDALQ 403 (412)
Q Consensus 392 daI~~~l~~~l~ 403 (412)
|++.++|+..+.
T Consensus 401 d~~~~~~~~~~~ 412 (413)
T TIGR00127 401 DAVEERLKKKLS 412 (413)
T ss_pred HHHHHHHHHHHC
T ss_conf 888887776523
No 24
>pfam03971 IDH Monomeric isocitrate dehydrogenase. NADP(+)-dependent isocitrate dehydrogenase (ICD) is an important enzyme of the intermediary metabolism, as it controls the carbon flux within the citric acid cycle and supplies the cell with 2-oxoglutarate EC:1.1.1.42 and NADPH for biosynthetic purposes.
Probab=99.45 E-value=3.9e-11 Score=88.81 Aligned_cols=221 Identities=19% Similarity=0.231 Sum_probs=161.3
Q ss_pred CCCCCCE--EEECCCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEE------E
Q ss_conf 6300101--4777884599999548886102554124665301011105146889999999999865998999------9
Q gi|254780902|r 137 DQYRATD--FQFPSKGKLILKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYL------S 208 (412)
Q Consensus 137 g~Y~gie--~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~------v 208 (412)
.+|...+ |.+...|+..+ +..+|. ....+......+|..+.....+|+.|++.|...|+..+.+..+ .
T Consensus 414 EEYGSHdkTF~~~~~G~v~v--vd~~g~--vl~~h~Ve~GDIwR~cq~kd~pI~dWvkLav~Rar~t~~pavFWLD~~Ra 489 (735)
T pfam03971 414 EEYGSHDKTFEIQADGVVRV--VDAAGE--VLLEHSVEAGDIWRMCQTKDAPIRDWVKLAVTRARLSNTPAVFWLDPARA 489 (735)
T ss_pred HHHCCCCCCEECCCCCEEEE--EECCCC--EEEECCCCCCCEEHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 98478985155589937999--979998--99971105888511211467179999999999989749976895288886
Q ss_pred ECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHH-HHHHHHHHHH--HCCCCCEEEEECCCCCHHHHHHHHHH-HC
Q ss_conf 74267775108999999999863100245423200024-3699999998--54966518863210232678888775-07
Q gi|254780902|r 209 TKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYTH-RLIDDMVASS--IKWSGGYIWACKNYDGDVQSDIVAQG-FG 284 (412)
Q Consensus 209 ~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i~~~~-~~vD~~~~~l--v~~P~~fVivt~NL~GDIlSD~aa~l-~G 284 (412)
|.+++.+.. ..-.++ .+-.|++.+- -.++++-.-| ++.-+.-+-||.|...|||+|+..-| .|
T Consensus 490 HD~~li~kV--------~~yL~~-----hdt~gldi~I~~p~~A~~~sl~r~~~G~dtIsvTGNVLRDYLTDLFPILElG 556 (735)
T pfam03971 490 HDVELIKKV--------KRYLKD-----HDTNGLDIRIMSPVEAMRFSLERLKRGQDTISVTGNVLRDYLTDLFPILELG 556 (735)
T ss_pred CHHHHHHHH--------HHHHHH-----CCCCCCCEEEECHHHHHHHHHHHHHCCCCEEEEECHHHHHHHCCHHHHHHCC
T ss_conf 269999999--------999875-----4898885174089999999999997589838862146776541112343203
Q ss_pred CCCCCEEEECCCCCCEEEECC-CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 532312431279875144212-2220345565542487755472799999999999863025730389999999999999
Q gi|254780902|r 285 SLGLMTSVLITADGKTMETEA-AHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIK 363 (412)
Q Consensus 285 glGlapSanig~~~~~~mfEp-~HGSAPd~~g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~ 363 (412)
.-.-+-|.---..| .+|||- ..||||+|+-|-+.---+.|..++-.|+.+--|+|+++..++.+..-.|+.++.|+.+
T Consensus 557 TSAKMLSIVPLm~G-GGlfETGAGGSAPKHVqQ~~~EnhLRWDSLGEFlAL~~Sle~la~~~~n~ka~vLa~~Ld~At~~ 635 (735)
T pfam03971 557 TSAKMLSIVPLMAG-GGMFETGAGGSAPKHVQQFVEENHLRWDSLGEFLALAASLEHLGIKTGNAKAKVLAKALDAATGK 635 (735)
T ss_pred CCCCCEEEEEECCC-CCEEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 43211022232047-83232488888618999998717531343777999998799998642886889999999999999
Q ss_pred HHHCCCC-CHHHH
Q ss_conf 9987981-63230
Q gi|254780902|r 364 TVEDGFM-TKDLA 375 (412)
Q Consensus 364 ~l~~G~~-T~DLg 375 (412)
.|++++- .+-+|
T Consensus 636 ~L~~~ksPsRkvg 648 (735)
T pfam03971 636 LLDNNKSPSRKVG 648 (735)
T ss_pred HHHCCCCCCCCCC
T ss_conf 9856999765669
No 25
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=99.26 E-value=9.3e-10 Score=80.22 Aligned_cols=215 Identities=20% Similarity=0.242 Sum_probs=153.1
Q ss_pred CCCCCCE--EEECCCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEE------
Q ss_conf 6300101--47778845999995488861025541246653010111051468899999999998659989999------
Q gi|254780902|r 137 DQYRATD--FQFPSKGKLILKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLS------ 208 (412)
Q Consensus 137 g~Y~gie--~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v------ 208 (412)
.+|...+ |.+..+|+..++ ...|. ....+......+|..+......|+.|++.|...|+..+-+..+-
T Consensus 420 eEYGSHdKTF~i~~dGv~~vv--~~~G~--VLleh~Ve~gDiwR~cq~kdapi~dWVkLaV~RarlS~~pavFWLDp~Ra 495 (744)
T COG2838 420 EEYGSHDKTFEIEADGVVRVV--DANGK--VLLEHDVEAGDIWRMCQVKDAPIRDWVKLAVTRARLSGMPAVFWLDPYRA 495 (744)
T ss_pred HHHCCCCCEEEECCCCEEEEE--ECCCC--EEEECCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 983777743782378669998--06875--74443434330888874256168899999998876249965787576763
Q ss_pred ECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHH-HHHHHHHHHH--HCCCCCEEEEECCCCCHHHHHHHHHH-HC
Q ss_conf 74267775108999999999863100245423200024-3699999998--54966518863210232678888775-07
Q gi|254780902|r 209 TKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYTH-RLIDDMVASS--IKWSGGYIWACKNYDGDVQSDIVAQG-FG 284 (412)
Q Consensus 209 ~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i~~~~-~~vD~~~~~l--v~~P~~fVivt~NL~GDIlSD~aa~l-~G 284 (412)
|..+..+.. +.|.++ -+-.|+...- -.+.+|-.-| +++-+.-+-||.|...|+|+|+..-| .|
T Consensus 496 hd~~li~kV------------~~yLkd-hdt~GldI~Ilsp~ea~~~sl~rl~~G~DtIsvTGNvLRDYlTDLFPIlELG 562 (744)
T COG2838 496 HDKELIKKV------------EAYLKD-HDTNGLDIQILSPVEAMRYSLERLRRGEDTISVTGNVLRDYLTDLFPILELG 562 (744)
T ss_pred CHHHHHHHH------------HHHHHH-CCCCCCCEEEECHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 159999999------------998650-4788861377468999999999997688636750067888775244576504
Q ss_pred CCCCCEEEECCCCCCEEEECC-CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 532312431279875144212-2220345565542487755472799999999999863025730389999999999999
Q gi|254780902|r 285 SLGLMTSVLITADGKTMETEA-AHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIK 363 (412)
Q Consensus 285 glGlapSanig~~~~~~mfEp-~HGSAPd~~g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~ 363 (412)
.-.-+-|..--..| .+|||. ..||||+|+-|-..---+.|+.++-.|+.+--|+|+|..-+|.+..-.|+.++.|+.+
T Consensus 563 TSAKMLSiVPlmaG-GgmfETGAGGSAPKhVqQ~~eENhLRWDSLGEFLALa~sle~~~~k~gn~kAkvLa~~LD~Atgk 641 (744)
T COG2838 563 TSAKMLSIVPLMAG-GGMFETGAGGSAPKHVQQLVEENHLRWDSLGEFLALAASLEHLGNKTGNAKAKVLAKALDAATGK 641 (744)
T ss_pred CCCCHHEEEEECCC-CCEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 43002101121147-73121488888708999998862110444788999997899985023518888999999999888
Q ss_pred HHHCCC
Q ss_conf 998798
Q gi|254780902|r 364 TVEDGF 369 (412)
Q Consensus 364 ~l~~G~ 369 (412)
.|.+.+
T Consensus 642 lLdn~K 647 (744)
T COG2838 642 LLDNNK 647 (744)
T ss_pred HHHCCC
T ss_conf 875589
No 26
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth . The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined . This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle.
Probab=97.81 E-value=0.00038 Score=45.19 Aligned_cols=315 Identities=15% Similarity=0.144 Sum_probs=184.6
Q ss_pred HCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCC--CCCCCCCCCCCCHHHHHHHHCCCEEE
Q ss_conf 4179984489982748998652862778999999865938872644898544--32112442211045898973296688
Q gi|254780902|r 31 IHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQAR--VKEFNLKKMWKSPNGTIRNILGGIIF 108 (412)
Q Consensus 31 ~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~--~~~~~l~~~~~S~n~~LR~~ldl~~~ 108 (412)
...+-++....-+-|..+...-.+.+.+..+-++.+...-+.|+-+.-.... .+.....+.+... +..-+.- -.
T Consensus 325 ~~~~p~~~~~~~~~g~~~~~~p~d~~~d~~~p~~~~~~g~~wg~dg~~~d~~~~~p~~~~~g~~~~~-~~~c~~~---g~ 400 (745)
T TIGR00178 325 YEDRPELAMVDSDKGITNLHVPSDVIVDASMPALIRASGKMWGPDGKLKDTKAVIPDSSYAGVYQAV-IEDCKEN---GA 400 (745)
T ss_pred HHCCCCEEEECCCCCCCCCCCCCCCEECCCCCHHHHHCCCCCCCCCCCCCHHHCCCCCHHHHHHHHH-HHHHHHC---CC
T ss_conf 4047530100021353112465200011321034540453227764100001104540235789999-9987633---77
Q ss_pred EEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCE--EEECCCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEECCHHH
Q ss_conf 30588048787788877867998505666300101--4777884599999548886102554124665301011105146
Q gi|254780902|r 109 REPIICSNVPRLIPGWKKPIIIGRHAFGDQYRATD--FQFPSKGKLILKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDS 186 (412)
Q Consensus 109 ~rp~~~~~~p~~~~~~~~divivREnteg~Y~gie--~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~ 186 (412)
..|...-.+| -+-+.-.....|...+ |.+..++...+.-+ ..|. ...........+|..+......
T Consensus 401 ~~p~~~g~~p---------~~gl~~~~~~~~g~~d~~~~~~~~g~~~~~~~-~~g~--~l~~~~~~~gd~w~~c~~~d~p 468 (745)
T TIGR00178 401 FDPTTMGTVP---------NVGLMAQKAEEYGSHDKTFEIPADGVVRVVDV-SSGE--VLLEEDVEAGDIWRLCQVKDAP 468 (745)
T ss_pred CCCCCCCCCC---------CCHHHHHHHHHCCCCCCEEEECCCCEEEEEEC-CCCC--HHHHHCCHHHHHHHHHHHCCCC
T ss_conf 6741124455---------41023343444066554022034550455422-3342--0211000000244444313452
Q ss_pred HHHHHHHHHHHHHHCCCCEEE-E-----ECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHH-HHHHHHHHHHH--
Q ss_conf 889999999999865998999-9-----74267775108999999999863100245423200024-36999999985--
Q gi|254780902|r 187 IRNFARAAMQYALARQLPLYL-S-----TKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYTH-RLIDDMVASSI-- 257 (412)
Q Consensus 187 i~Riar~AF~~A~~~~~kvt~-v-----~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i~~~~-~~vD~~~~~lv-- 257 (412)
++.|++.+...++..+.+..+ . |..++.+.. ..-.++ .+..++..+- .-+.++-..+.
T Consensus 469 ~~dw~~l~~~~~~~~g~p~~~wldp~~~~~~~~~~~~--------~~~l~d-----~d~~gld~~~~~p~~~~~~~~~~~ 535 (745)
T TIGR00178 469 IQDWVKLAVTRARASGTPAVFWLDPERAHDEELIKKV--------ETYLKD-----HDTEGLDIQILSPVEATRFTLARL 535 (745)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH--------HHHHHH-----CCCCCCCEEEHHHHHHHHHHHHHH
T ss_conf 4567887664433037733675154333057899999--------887530-----366664121000355677768886
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHH-HCCCCCCEEEECCCCCCEEEEC-CCCCCHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 4966518863210232678888775-0753231243127987514421-2222034556554248775547279999999
Q gi|254780902|r 258 KWSGGYIWACKNYDGDVQSDIVAQG-FGSLGLMTSVLITADGKTMETE-AAHGTVTRHYRQHQQGKETSTNSIASIFAWT 335 (412)
Q Consensus 258 ~~P~~fVivt~NL~GDIlSD~aa~l-~GglGlapSanig~~~~~~mfE-p~HGSAPd~~g~~iaGk~iA~NP~a~IlS~a 335 (412)
+.....+-++.|+.-|+++|+...+ .|.-.-+-|..--..|. .+|| ...|++|+|+.|...-..+.|+.++-.++.+
T Consensus 536 ~~g~d~~~~~g~~l~d~~~dl~p~~~lg~~~~~l~~~pl~~gg-g~~~~g~gg~~p~~~~~~~~~~~l~wd~lg~~l~l~ 614 (745)
T TIGR00178 536 RRGEDTISVTGNVLRDYLTDLFPILELGTSAKMLSVVPLMAGG-GLFETGAGGSAPKHVQQFLEENHLRWDSLGEFLALA 614 (745)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 4021012221346766554455555404311233221110377-511046776542678887651332111245678876
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC-CCHHHH
Q ss_conf 9999863025730389999999999999998798-163230
Q gi|254780902|r 336 RGLLHRAKLDENAELKKFAENLERVCIKTVEDGF-MTKDLA 375 (412)
Q Consensus 336 mmL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~-~T~DLg 375 (412)
.-++|++...++....-.++.++.++.+.+.+.. -.+-.|
T Consensus 615 ~~~~~~~~~~g~~~~~~l~~~ld~~~g~~l~~~~~p~~~~g 655 (745)
T TIGR00178 615 ASLEHLGNKTGNPKAGVLADTLDAATGKLLDNNKSPSRKVG 655 (745)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 44566552046414567777776666665304566420013
No 27
>PRK03877 consensus
Probab=96.63 E-value=0.0026 Score=39.92 Aligned_cols=81 Identities=20% Similarity=0.157 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 436999999985496651-8863210232678888775075323124312798751442122220345565542487755
Q gi|254780902|r 246 HRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETS 324 (412)
Q Consensus 246 ~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA 324 (412)
..-.|.+..+-.+ ++| ++|+ ||= |++-.-.-.+++-.+.|+.-.=.+----|-||||-| |||||+|
T Consensus 244 P~paDt~F~~~~~--~~~D~vla--MYH----DQglip~K~l~f~~~vn~TlGLp~irtSpdHGta~d-----iaGk~~A 310 (328)
T PRK03877 244 PLPADTLFFRAGR--GDFDLVVA--MYH----DQGHGPVKVLGLEAGVNITVGLPVIRTSVDHGTAFD-----IAGKGIA 310 (328)
T ss_pred CCCCHHHHHHHHC--CCCCEEEE--ECC----CCCCHHHHHCCCCCCEEEECCCCEEEECCCCCCHHH-----HHCCCCC
T ss_conf 7381889887644--78999999--553----553165642247874799569991377899870566-----6078989
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 4727999999999998
Q gi|254780902|r 325 TNSIASIFAWTRGLLH 340 (412)
Q Consensus 325 ~NP~a~IlS~ammL~h 340 (412)
||.+|+-|.-+.++.
T Consensus 311 -~~~s~~~Ai~~A~~~ 325 (328)
T PRK03877 311 -DERSMLEALRQAAEL 325 (328)
T ss_pred -CHHHHHHHHHHHHHH
T ss_conf -869999999999987
No 28
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=96.51 E-value=0.0037 Score=38.96 Aligned_cols=82 Identities=17% Similarity=0.094 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 436999999985496651-8863210232678888775075323124312798751442122220345565542487755
Q gi|254780902|r 246 HRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETS 324 (412)
Q Consensus 246 ~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA 324 (412)
..-.|.+..+-. -.+| ++++ ||= |++-.-.-.+++--++|+.-.=.+----|-||||-| |||||+|
T Consensus 245 P~paDt~F~~~~--~~~~D~vla--mYH----DQglip~K~l~f~~~Vn~tlGLp~irtSpdHGTAfd-----Iagk~~A 311 (333)
T PRK03743 245 PVPADSVFHLAL--QGRYDAVLS--LYH----DQGHIATKTLDFERTISITNGLPFLRTSVDHGTAFD-----IAGTGIA 311 (333)
T ss_pred CCCCHHHHHHHC--CCCCCEEEE--CCC----CCCHHHHHHCCCCCCEEEECCCCEEEECCCCCCHHH-----HHCCCCC
T ss_conf 999567777511--588898997--674----542076652357874799469992477899870466-----6178989
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 47279999999999986
Q gi|254780902|r 325 TNSIASIFAWTRGLLHR 341 (412)
Q Consensus 325 ~NP~a~IlS~ammL~hl 341 (412)
||.+|+-|.-+..+..
T Consensus 312 -~~~s~~~Ai~~a~~~a 327 (333)
T PRK03743 312 -SSVSMEEAIKLAAKYA 327 (333)
T ss_pred -CHHHHHHHHHHHHHHH
T ss_conf -9699999999999999
No 29
>PRK04507 consensus
Probab=96.49 E-value=0.0043 Score=38.55 Aligned_cols=82 Identities=15% Similarity=0.004 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 436999999985496651-8863210232678888775075323124312798751442122220345565542487755
Q gi|254780902|r 246 HRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETS 324 (412)
Q Consensus 246 ~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA 324 (412)
..-.|.+..+ .+-+.| ++|+ ||= |.+-.-.-.+++-.+.|+.-.=.+----|-||||-| |||||+|
T Consensus 238 P~paDt~F~~--~~~~~~D~vla--mYH----DQglip~K~l~f~~~Vn~tlGLP~irtS~dHGta~d-----iag~g~A 304 (323)
T PRK04507 238 PLPADTAFLP--QKLIGFDAVVA--MYH----DQGLPVLKYSGFEQAVNITLGLPYPRVAVDHGTALE-----LAGRGVA 304 (323)
T ss_pred CCCCHHHHHH--HHCCCCCEEEE--CCC----CCCHHHHHHCCCCCCEEEECCCCEEEECCCCCCHHH-----HHCCCCC
T ss_conf 9680778766--42469899998--261----454487875047872799438990277899871566-----6078989
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 47279999999999986
Q gi|254780902|r 325 TNSIASIFAWTRGLLHR 341 (412)
Q Consensus 325 ~NP~a~IlS~ammL~hl 341 (412)
||.+|+-|.-+..+..
T Consensus 305 -~~~s~~~Ai~la~~~~ 320 (323)
T PRK04507 305 -DPSSLMAATALCARLA 320 (323)
T ss_pred -CHHHHHHHHHHHHHHH
T ss_conf -9699999999999998
No 30
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=96.47 E-value=0.0037 Score=38.95 Aligned_cols=82 Identities=13% Similarity=0.075 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 2436999999985496651-886321023267888877507532312431279875144212222034556554248775
Q gi|254780902|r 245 THRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKET 323 (412)
Q Consensus 245 ~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~i 323 (412)
-..-.|.+..+-. -+.| ++|+ ||= |++-.-.-.+++-.+.|+.-.=.+----|-||||-| |||||+
T Consensus 219 GP~paDt~F~~~~--~~~~D~vva--MYH----DQglip~K~l~f~~~vn~TlGLp~iRtSpdHGTa~d-----IaGkg~ 285 (304)
T PRK03946 219 GPLVPDSAFTPNK--RKNFNRYVA--MYH----DQGLAPLKALYFDESINVSLNLPILRTSVDHGTAFD-----IAYKNK 285 (304)
T ss_pred CCCCHHHHHHHHH--HCCCCEEEE--ECC----CCCCHHHHHCCCCCCEEEECCCCEEEECCCCCCHHH-----HHCCCC
T ss_conf 8988268888754--157999998--152----443265652247872799528990367899870566-----607898
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 54727999999999998
Q gi|254780902|r 324 STNSIASIFAWTRGLLH 340 (412)
Q Consensus 324 A~NP~a~IlS~ammL~h 340 (412)
| ||.+|+-|.-+..+-
T Consensus 286 A-~~~s~~~Ai~~A~~l 301 (304)
T PRK03946 286 A-NTKSYLNAIKYAINL 301 (304)
T ss_pred C-CHHHHHHHHHHHHHH
T ss_conf 9-969999999999998
No 31
>PRK02848 consensus
Probab=96.47 E-value=0.0053 Score=38.01 Aligned_cols=82 Identities=17% Similarity=0.093 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 436999999985496651-8863210232678888775075323124312798751442122220345565542487755
Q gi|254780902|r 246 HRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETS 324 (412)
Q Consensus 246 ~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA 324 (412)
..-.|.+..+-.+ ++| ++++ ||= |++-.-.-.+++-.+.|+.-.=.+-=--|=||||-| |||||+|
T Consensus 250 P~pADt~F~~~~~--~~~D~vla--MYH----DQglip~K~l~f~~~vN~TlGLp~iRtSpDHGTa~d-----iagk~~A 316 (341)
T PRK02848 250 PFPADTIFLKAQR--GEFDAVVT--MYH----DQGQIAIKLMGFSRGVTVQGGLPIPITTPAHGTAYD-----IAGKGIA 316 (341)
T ss_pred CCCCHHHHHHHHC--CCCCEEEE--ECC----CCCCHHHHHCCCCCCEEEECCCCEEEECCCCCCHHH-----HHCCCCC
T ss_conf 9881889888652--78999998--352----453065653357873798348992167899870466-----5078989
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 47279999999999986
Q gi|254780902|r 325 TNSIASIFAWTRGLLHR 341 (412)
Q Consensus 325 ~NP~a~IlS~ammL~hl 341 (412)
||.+|+-|.-+..+-.
T Consensus 317 -~~~S~~~Ai~~A~~~~ 332 (341)
T PRK02848 317 -DVGATRQAFLIACRMG 332 (341)
T ss_pred -CHHHHHHHHHHHHHHH
T ss_conf -9699999999999999
No 32
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=96.31 E-value=0.0064 Score=37.50 Aligned_cols=83 Identities=12% Similarity=-0.010 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 436999999985496651-8863210232678888775075323124312798751442122220345565542487755
Q gi|254780902|r 246 HRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETS 324 (412)
Q Consensus 246 ~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA 324 (412)
..-.|.+..+-. -.+| ++++ || -|++-.-+-.+++--+.|+.-.=.+----|-||||-| |||||+|
T Consensus 241 P~paDt~F~~~~--~~~~D~vla--MY----HDQglip~K~l~f~~~vn~TlGLp~iRtS~dHGTA~d-----iAGkg~A 307 (329)
T PRK01909 241 PYPADTLFQPRH--LEDADCVLA--MF----HDQGLPVLKYATFGEGINVTLGLPIIRTSVDHGTALD-----LAGTGRA 307 (329)
T ss_pred CCCCHHHHHHHH--CCCCCEEEE--CC----CCCCHHHHHHCCCCCCEEEECCCCCEEECCCCCHHHH-----HHCCCCC
T ss_conf 679378989975--779899998--55----0123587875357873799348991067899871566-----6278989
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 472799999999999863
Q gi|254780902|r 325 TNSIASIFAWTRGLLHRA 342 (412)
Q Consensus 325 ~NP~a~IlS~ammL~hlg 342 (412)
||.+|+-|.-+..+-..
T Consensus 308 -~~~s~~~Ai~~A~~~a~ 324 (329)
T PRK01909 308 -DPGSMIAAIDTAVTMAR 324 (329)
T ss_pred -CHHHHHHHHHHHHHHHH
T ss_conf -96999999999999998
No 33
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=96.26 E-value=0.0072 Score=37.19 Aligned_cols=82 Identities=20% Similarity=0.141 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 436999999985496651-8863210232678888775075323124312798751442122220345565542487755
Q gi|254780902|r 246 HRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETS 324 (412)
Q Consensus 246 ~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA 324 (412)
..-.|.+..+-.+ .+| ++++ ||= |++-.-.-.+++--+.|+.-.=.+.---|-||||-| |||||+|
T Consensus 250 P~paDt~F~~~~~--~~~D~vla--MYH----DQglip~K~l~f~~~vn~tlGLp~iRtS~dHGTA~d-----iAgk~~A 316 (336)
T PRK05312 250 PLPADTMFHAAAR--ATYDAAIC--MYH----DQALIPIKTLDFDEGVNVTLGLPFIRTSPDHGTAFD-----IAGKGIA 316 (336)
T ss_pred CCCCHHHHHHHHH--CCCCEEEE--CCC----CCCHHHHHHCCCCCCEEEECCCCCEEECCCCCHHHH-----HHCCCCC
T ss_conf 9896687544450--68899998--341----336797874458874798138991067899870466-----6178989
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 47279999999999986
Q gi|254780902|r 325 TNSIASIFAWTRGLLHR 341 (412)
Q Consensus 325 ~NP~a~IlS~ammL~hl 341 (412)
||.+|+-|.-+..+-.
T Consensus 317 -~~~s~~~Ai~~A~~~~ 332 (336)
T PRK05312 317 -RPDSLIAALRLAAQMA 332 (336)
T ss_pred -CHHHHHHHHHHHHHHH
T ss_conf -9699999999999999
No 34
>PRK04607 consensus
Probab=96.22 E-value=0.0067 Score=37.37 Aligned_cols=81 Identities=19% Similarity=0.046 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 436999999985496651-8863210232678888775075323124312798751442122220345565542487755
Q gi|254780902|r 246 HRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETS 324 (412)
Q Consensus 246 ~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA 324 (412)
..-.|.+..+-.+ +.| ++++ ||= |++-.-.-.+++-.+.|+.-.=.+----|-||||-| |||||+|
T Consensus 245 P~paDt~F~~~~~--~~~D~vla--mYH----DQglip~K~~~f~~~Vn~TlGLP~iRtS~dHGTa~d-----Iag~g~A 311 (330)
T PRK04607 245 PLPADTIFNEKYL--NDADAVLG--MYH----DQVLPVLKYKGFGRSVNITLGLPFIRTSVDHGTALE-----LAGTGQA 311 (330)
T ss_pred CCCCHHHHHHHCC--CCCCEEEE--CCC----CCCHHHHHHCCCCCCEEEECCCCEEEECCCCCCHHH-----HHCCCCC
T ss_conf 9681777654203--58999998--351----442176664256763799548992477899870466-----6178989
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 4727999999999998
Q gi|254780902|r 325 TNSIASIFAWTRGLLH 340 (412)
Q Consensus 325 ~NP~a~IlS~ammL~h 340 (412)
||.+|+.|.-+..+-
T Consensus 312 -~~~S~~~Ai~~A~~~ 326 (330)
T PRK04607 312 -DTGSFRTALTHAIEL 326 (330)
T ss_pred -CHHHHHHHHHHHHHH
T ss_conf -969999999999999
No 35
>PRK03367 consensus
Probab=96.21 E-value=0.0068 Score=37.34 Aligned_cols=82 Identities=16% Similarity=0.022 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 436999999985496651-8863210232678888775075323124312798751442122220345565542487755
Q gi|254780902|r 246 HRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETS 324 (412)
Q Consensus 246 ~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA 324 (412)
..-.|.+..+-.+ ++| ++++ ||= |.+-.-.-.+++-.|.|+.-.=.+----|-||||-| |||||+|
T Consensus 243 P~paDt~F~~~~~--~~~D~vla--mYH----DQglip~K~~~f~~~VnvtlGLp~iRtS~dHGTa~d-----iagkg~A 309 (329)
T PRK03367 243 PLPADTLFQPKYL--DHADAVLA--MYH----DQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALE-----LAGRGKA 309 (329)
T ss_pred CCCCHHHHHHHHC--CCCCEEEE--ECC----CCCHHHHHHCCCCCCEEEECCCCEEEECCCCCCHHH-----HHCCCCC
T ss_conf 9683578788645--78999998--251----452066653046761799638992477899870566-----6278989
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 47279999999999986
Q gi|254780902|r 325 TNSIASIFAWTRGLLHR 341 (412)
Q Consensus 325 ~NP~a~IlS~ammL~hl 341 (412)
||.+|+-|.-+..+-.
T Consensus 310 -~~~s~~~Ai~~A~~~~ 325 (329)
T PRK03367 310 -DVGSFITALNLAIKMI 325 (329)
T ss_pred -CHHHHHHHHHHHHHHH
T ss_conf -9699999999999998
No 36
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=96.18 E-value=0.0096 Score=36.41 Aligned_cols=81 Identities=19% Similarity=0.116 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 36999999985496651-88632102326788887750753231243127987514421222203455655424877554
Q gi|254780902|r 247 RLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETST 325 (412)
Q Consensus 247 ~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~ 325 (412)
.-.|.+..+-.+ .+| ++|+ ||= |++-.-.-.+++-.|.|+.-.=.+----|-||||-| |||||+|
T Consensus 248 ~paDt~F~~~~~--~~~D~~va--mYH----DQglip~K~~~f~~~Vn~tlGLp~iRtSpdHGTa~d-----iagk~~A- 313 (334)
T PRK00232 248 LPADTLFLPAYL--GDFDAVVA--MYH----DQGLPVLKYLGFGRGVNVTLGLPFIRTSVDHGTALD-----IAGKGIA- 313 (334)
T ss_pred CCCHHHHHHHHC--CCCCEEEE--ECC----CCCHHHHHHCCCCCCEEEECCCCEEEECCCCCCHHH-----HHCCCCC-
T ss_conf 082888776550--58999999--552----431276652356762799538991477899870666-----6178989-
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 7279999999999986
Q gi|254780902|r 326 NSIASIFAWTRGLLHR 341 (412)
Q Consensus 326 NP~a~IlS~ammL~hl 341 (412)
||.+|+-|.-+..+-.
T Consensus 314 ~~~s~~~Ai~~A~~~a 329 (334)
T PRK00232 314 DVGSFITALNLAIRMA 329 (334)
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 9699999999999999
No 37
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=96.05 E-value=0.0089 Score=36.59 Aligned_cols=80 Identities=20% Similarity=0.128 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 436999999985496651-8863210232678888775075323124312798751442122220345565542487755
Q gi|254780902|r 246 HRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETS 324 (412)
Q Consensus 246 ~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA 324 (412)
..-.|.+..+-.+ .+| ++++ ||= |++-.-.-.+++--+.|+.-.=.+----|-||||-| |||||+|
T Consensus 244 P~paDt~F~~~~~--~~~D~vla--MYH----DQglip~K~~~f~~~Vn~TlGLp~iRtSpdHGTa~d-----iagkg~A 310 (326)
T PRK03371 244 PCPPDTVFLQAYE--GQYDMVVA--MYH----DQGHIPLKLLGFYDGVNITAGLPFIRTSADHGTAFD-----IAWTGKA 310 (326)
T ss_pred CCCHHHHHHHHHC--CCCCEEEE--ECC----CCCCHHHHHCCCCCCEEEECCCCEEEECCCCCCHHH-----HHCCCCC
T ss_conf 9881889887435--68999998--052----453165642257873799469991477899870566-----6178989
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 472799999999999
Q gi|254780902|r 325 TNSIASIFAWTRGLL 339 (412)
Q Consensus 325 ~NP~a~IlS~ammL~ 339 (412)
||.+|+-|.-+..+
T Consensus 311 -~~~s~~~Ai~~A~~ 324 (326)
T PRK03371 311 -KSESMAVSIKLAMQ 324 (326)
T ss_pred -CHHHHHHHHHHHHH
T ss_conf -96999999999998
No 38
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=96.03 E-value=0.0089 Score=36.61 Aligned_cols=83 Identities=16% Similarity=-0.047 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHC------CCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 4369999999854------96651-8863210232678888775075323124312798751442122220345565542
Q gi|254780902|r 246 HRLIDDMVASSIK------WSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQ 318 (412)
Q Consensus 246 ~~~vD~~~~~lv~------~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~i 318 (412)
..-.|.+...-.+ +-+.| ++|+ ||= |++-.-.-.+++--+.|+.-.=.+----|-||||-| |
T Consensus 240 P~paDt~F~~a~~~ff~~~~~~~~D~vla--MYH----DQglip~K~l~f~~~Vn~TlGLp~iRtS~dHGTA~d-----i 308 (332)
T PRK02746 240 PIPPDTCWLSAAQAWYGKGVAEAPDGYLA--LYH----DQGLIPVKLLAFDYAVNTTIGLPFIRTSPDHGTAFD-----I 308 (332)
T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCEEEE--ECC----CCCCHHHEECCCCCCEEEECCCCEEEECCCCCCHHH-----H
T ss_conf 76813665555442205121356898998--443----545522301356763799459991267899870666-----6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 4877554727999999999998
Q gi|254780902|r 319 QGKETSTNSIASIFAWTRGLLH 340 (412)
Q Consensus 319 aGk~iA~NP~a~IlS~ammL~h 340 (412)
||||+| ||.+|+-|.-+..+-
T Consensus 309 agk~~A-~~~S~~~Ai~~A~~l 329 (332)
T PRK02746 309 AGKGIA-RPQSMKAAIKLAWEL 329 (332)
T ss_pred HCCCCC-CHHHHHHHHHHHHHH
T ss_conf 078989-969999999999998
No 39
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=95.87 E-value=0.012 Score=35.79 Aligned_cols=58 Identities=22% Similarity=0.114 Sum_probs=44.2
Q ss_pred HHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8887750753231243127987514421222203455655424877554727999999999998
Q gi|254780902|r 277 DIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLH 340 (412)
Q Consensus 277 D~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~NP~a~IlS~ammL~h 340 (412)
|.+-.-.--+|+--|.|+.-+=.+----|-||||-| |||||+| ||.+++-+..+.-+.
T Consensus 268 DQgliplK~l~Fd~~VNvtlGLPfiRTS~DHGTAfD-----iAgkGiA-~~~S~~~Ai~lA~~l 325 (332)
T COG1995 268 DQGLIPLKYLGFDRGVNVTLGLPFIRTSVDHGTAFD-----IAGKGIA-DPGSLIAAIKLAAKL 325 (332)
T ss_pred CCCCHHHHHHCCCCCEEEECCCCEEEECCCCCCHHH-----HHCCCCC-CCHHHHHHHHHHHHH
T ss_conf 664355644223532577338870340687620543-----3047857-806899999999999
No 40
>pfam04166 PdxA Pyridoxal phosphate biosynthetic protein PdxA. In Escherichia coli the coenzyme pyridoxal 5'-phosphate is synthesized de novo by a pathway that is thought to involve the condensation of 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose, catalysed by the enzymes PdxA and PdxJ, to form either pyridoxine (vitamin B6) or pyridoxine 5'-phosphate.
Probab=95.82 E-value=0.011 Score=36.09 Aligned_cols=76 Identities=21% Similarity=0.121 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 36999999985496651-88632102326788887750753231243127987514421222203455655424877554
Q gi|254780902|r 247 RLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETST 325 (412)
Q Consensus 247 ~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~ 325 (412)
.-.|.+..+- +-++| ++++ ||= |.+-.-.-.+++--+.|+.-.=.+----|-||||-| |||||+|
T Consensus 221 ~paDt~F~~~--~~~~~D~v~a--mYH----DQglip~K~~~f~~~vn~t~GLp~irtS~dHGta~d-----iagk~~A- 286 (299)
T pfam04166 221 LPADTAFRPV--LLGRYDAVLA--MYH----DQGLIPLKYLGFDRGVNVTLGLPIIRTSVDHGTAFD-----IAGKGKA- 286 (299)
T ss_pred CCCHHHHHHH--HCCCCCEEEE--ECC----CCCCHHHHHCCCCCCEEEECCCCEEEECCCCCCHHH-----HHCCCCC-
T ss_conf 7943776541--1057899998--052----442076653356873799448992377899870566-----6078989-
Q ss_pred CHHHHHHHHHH
Q ss_conf 72799999999
Q gi|254780902|r 326 NSIASIFAWTR 336 (412)
Q Consensus 326 NP~a~IlS~am 336 (412)
||.+|+-|.-+
T Consensus 287 ~~~s~~~Ai~~ 297 (299)
T pfam04166 287 DPGSLIAALKL 297 (299)
T ss_pred CHHHHHHHHHH
T ss_conf 96999999997
No 41
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised , , . This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process.
Probab=81.15 E-value=1.1 Score=23.55 Aligned_cols=54 Identities=19% Similarity=0.114 Sum_probs=38.7
Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 888877507532312431279875144212222034556554248775547279999999
Q gi|254780902|r 276 SDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWT 335 (412)
Q Consensus 276 SD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~NP~a~IlS~a 335 (412)
-|.+-...--+++=-|.|++-+-.+.=-=+=||||-| ||+||.| |-.+.|-|.-
T Consensus 266 HD~GL~plK~l~FdegvN~tLglPfiRTS~DHGTA~d-----iA~~nKA-~~~S~l~Al~ 319 (325)
T TIGR00557 266 HDQGLAPLKALAFDEGVNVTLGLPFIRTSVDHGTAFD-----IAYKNKA-DEKSYLNALK 319 (325)
T ss_pred CCCCCHHHHHHHCCCCEEEEECCCHHCCCCCCHHHHH-----HHCCCCC-CCCHHHHHHH
T ss_conf 5666067776434771466408761013786104788-----6201345-6300899999
No 42
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=77.49 E-value=0.94 Score=23.98 Aligned_cols=14 Identities=0% Similarity=0.012 Sum_probs=6.3
Q ss_pred ECHHHHHHHHHHHH
Q ss_conf 74267775108999
Q gi|254780902|r 209 TKDTILKSYDGRFK 222 (412)
Q Consensus 209 ~KaNVlk~tdglf~ 222 (412)
|-.++.+..+..|.
T Consensus 263 DSyD~~~a~~~i~~ 276 (462)
T PRK09198 263 DSYDLWNAITEIWP 276 (462)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 40569999999999
No 43
>KOG1671 consensus
Probab=71.05 E-value=3.2 Score=20.61 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=35.3
Q ss_pred HHCCCCCE-EE-EECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCH
Q ss_conf 85496651-88-63210232678888775075323124312798751442122220345565542487755472
Q gi|254780902|r 256 SIKWSGGY-IW-ACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNS 327 (412)
Q Consensus 256 lv~~P~~f-Vi-vt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~NP 327 (412)
-|++|+|+ +| ||+- ||-.|-+|-|+.|.+ |=|+|||-=| +.|+=.. -|
T Consensus 140 rvk~~ewl~~igVCTh----------------LGCVp~~~AGd~gg~--~CPCHGSHYd-----asGRIrk-GP 189 (210)
T KOG1671 140 RVKKPEWLVVIGVCTH----------------LGCVPIANAGDYGGY--YCPCHGSHYD-----ASGRIRK-GP 189 (210)
T ss_pred HCCCCCEEEEEEEECC----------------CCCCCCCCCCCCCCE--ECCCCCCCCC-----CCCCEEC-CC
T ss_conf 0167645899865313----------------463011103666760--0466653103-----3570664-89
No 44
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=66.51 E-value=9.2 Score=17.77 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=7.1
Q ss_pred HCCCCCCCCHHHHHHH
Q ss_conf 2487755472799999
Q gi|254780902|r 318 QQGKETSTNSIASIFA 333 (412)
Q Consensus 318 iaGk~iA~NP~a~IlS 333 (412)
|.|.+|..+-+..||.
T Consensus 330 IqGDgI~~~~i~~Il~ 345 (407)
T cd01569 330 IQGDGITLERIEEILE 345 (407)
T ss_pred EECCCCCHHHHHHHHH
T ss_conf 8548869999999999
No 45
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=64.86 E-value=3.2 Score=20.66 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=29.5
Q ss_pred HCCCCCEEEE--ECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCH
Q ss_conf 5496651886--3210232678888775075323124312798751442122220345565542487755472
Q gi|254780902|r 257 IKWSGGYIWA--CKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNS 327 (412)
Q Consensus 257 v~~P~~fViv--t~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~NP 327 (412)
..+|++||++ |+- ||=.|..+-+..| ..|-|+|||--| .+|+..+ .|
T Consensus 57 s~~~e~lV~igvCTH----------------LGC~P~~~~~~~g--Gf~CPCHGS~yD-----~aGRv~~-GP 105 (126)
T cd03470 57 SGKPEWLVVIGICTH----------------LGCVPTYRAGDYG--GFFCPCHGSHYD-----ASGRIRK-GP 105 (126)
T ss_pred CCCCCEEEEECCCCC----------------CCEEECCCCCCCC--CEECCCCCCCCC-----CCCCEEC-CC
T ss_conf 178757999703366----------------5414256888778--400357687417-----8887835-98
No 46
>KOG3040 consensus
Probab=59.48 E-value=12 Score=16.97 Aligned_cols=191 Identities=15% Similarity=0.125 Sum_probs=101.3
Q ss_pred CCC--HHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH-HHHCCCEEEEEEEEECCCCCC----CCCCCCC
Q ss_conf 277--899999986593887264489854432112442211045898-973296688305880487877----8887786
Q gi|254780902|r 55 QVT--IDAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKSPNGTI-RNILGGIIFREPIICSNVPRL----IPGWKKP 127 (412)
Q Consensus 55 ~l~--~da~eaik~~~v~lkg~~~tP~~~~~~~~~l~~~~~S~n~~L-R~~ldl~~~~rp~~~~~~p~~----~~~~~~d 127 (412)
++| .++++-++...+..|=-+.|.+.++ +.+-..| |-.|| +...-+ +.++|.. ....-.+
T Consensus 24 avpga~eAl~rLr~~~~kVkFvTNttk~Sk----------~~l~~rL~rlgf~--v~eeei-~tsl~aa~~~~~~~~lrP 90 (262)
T KOG3040 24 AVPGAVEALKRLRDQHVKVKFVTNTTKESK----------RNLHERLQRLGFD--VSEEEI-FTSLPAARQYLEENQLRP 90 (262)
T ss_pred CCCCHHHHHHHHHHCCCEEEEEECCCCHHH----------HHHHHHHHHHCCC--CCHHHH-CCCCHHHHHHHHHCCCCC
T ss_conf 687779999999746726999756760268----------9999999981777--557885-275389999999658784
Q ss_pred EEEEECCCCCCCCCCEEEECCCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC-CEE
Q ss_conf 7998505666300101477788459999954888610255412466530101110514688999999999986599-899
Q gi|254780902|r 128 IIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL-PLY 206 (412)
Q Consensus 128 ivivREnteg~Y~gie~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~-kvt 206 (412)
..++++-.--.+-||+... +.+.- ++..++ .++. .....||+.-+..++ .+.
T Consensus 91 ~l~v~d~a~~dF~gidTs~--pn~VV---iglape------------------~F~y----~~ln~AFrvL~e~~k~~LI 143 (262)
T KOG3040 91 YLIVDDDALEDFDGIDTSD--PNCVV---IGLAPE------------------GFSY----QRLNRAFRVLLEMKKPLLI 143 (262)
T ss_pred EEEECCCCHHHCCCCCCCC--CCEEE---EECCCC------------------CCCH----HHHHHHHHHHHCCCCCEEE
T ss_conf 4897455053278766789--98389---951734------------------4668----8999999999707887079
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE-EHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 997426777510899999999986310024542320-0024369999999854966518863210232678888775075
Q gi|254780902|r 207 LSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGI-TYTHRLIDDMVASSIKWSGGYIWACKNYDGDVQSDIVAQGFGS 285 (412)
Q Consensus 207 ~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i-~~~~~~vD~~~~~lv~~P~~fVivt~NL~GDIlSD~aa~l~Gg 285 (412)
.+||+--.|.++|+.....-=++.-||..-....-| .-+..+.-.+..-+=..|++-|++-..+.+|+.- |+-.|-
T Consensus 144 ai~kgryykr~~Gl~lgpG~fv~aLeyatg~~a~vvGKP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgG---Aq~~GM 220 (262)
T KOG3040 144 AIGKGRYYKRVDGLCLGPGPFVAALEYATGCEATVVGKPSPFFFESALQALGVDPEEAVMIGDDLNDDVGG---AQACGM 220 (262)
T ss_pred EECCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCHHHHEEECCCCCCCHHH---HHHHCC
T ss_conf 95275156413663237427777755504865787069977899999976389847916775622322055---766162
Q ss_pred CCC
Q ss_conf 323
Q gi|254780902|r 286 LGL 288 (412)
Q Consensus 286 lGl 288 (412)
.|+
T Consensus 221 rgi 223 (262)
T KOG3040 221 RGI 223 (262)
T ss_pred EEE
T ss_conf 258
No 47
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458; InterPro: IPR006355 These sequences are all members of the IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. .
Probab=58.68 E-value=13 Score=16.88 Aligned_cols=194 Identities=14% Similarity=0.147 Sum_probs=116.2
Q ss_pred CCCCCH--HHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCC---CCC-CCCC
Q ss_conf 862778--9999998659388726448985443211244221104589897329668830588048787---788-8778
Q gi|254780902|r 53 DDQVTI--DAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPR---LIP-GWKK 126 (412)
Q Consensus 53 g~~l~~--da~eaik~~~v~lkg~~~tP~~~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~---~~~-~~~~ 126 (412)
|..+|- ||+.-++++.+.++=-+-+-+.++ +.+...||+ |+..+.-.-+ +.+.|. ... ..-.
T Consensus 21 G~Avpgs~EAv~rL~~~s~kvrF~tN~~~~S~----------~~l~~rLqr-LgfdisE~ev-~tpapaa~q~l~e~~lR 88 (258)
T TIGR01458 21 GVAVPGSAEAVKRLKRASLKVRFVTNEKKESK----------RDLVERLQR-LGFDISEEEV-ITPAPAAAQLLKEKKLR 88 (258)
T ss_pred CEECHHHHHHHHHHHHCEEEEEEECCCCCHHH----------HHHHHHHHH-CCCCCCHHHH-CCCHHHHHHHHHHCCCC
T ss_conf 51441369999988408058997016862147----------999999877-0773214421-06778999999746899
Q ss_pred CEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCC-E
Q ss_conf 679985056663001014777884599999548886102554124665301011105146889999999999865998-9
Q gi|254780902|r 127 PIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLP-L 205 (412)
Q Consensus 127 divivREnteg~Y~gie~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~k-v 205 (412)
|...||...=-.+-||+...+- + +++.+-++ +++. .....||+.=..-.++ +
T Consensus 89 P~Llv~D~vl~~FdgIdTS~PN--c---VV~g~a~E------------------~Fsy----q~~N~AFr~L~d~~kP~L 141 (258)
T TIGR01458 89 PYLLVDDDVLEEFDGIDTSDPN--C---VVMGEAEE------------------SFSY----QRLNRAFRVLLDLEKPLL 141 (258)
T ss_pred CEEEEECCCCCCCCCCCCCCCC--E---EEEECCCC------------------CCCH----HHHHHHHHHHHCCCCCCE
T ss_conf 5167776855325756678987--5---89825788------------------7348----888889988742889615
Q ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE-EHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHH-H
Q ss_conf 9997426777510899999999986310024542320-0024369999999854966518863210232678888775-0
Q gi|254780902|r 206 YLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGI-TYTHRLIDDMVASSIKWSGGYIWACKNYDGDVQSDIVAQG-F 283 (412)
Q Consensus 206 t~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i-~~~~~~vD~~~~~lv~~P~~fVivt~NL~GDIlSD~aa~l-~ 283 (412)
.+.||+--.|.+||+...+.-=+.+-+|.......-| .-+..+...+..-+=..|++-||+=. ||.+|.+.++ .
T Consensus 142 I~~gkgryykr~dGl~ldvGpf~~ALeyat~~ka~vvGKPs~~fF~~al~a~G~epeeaVMiGD----D~~~DVGGAQ~c 217 (258)
T TIGR01458 142 IALGKGRYYKRKDGLALDVGPFVKALEYATDIKAEVVGKPSKEFFKEALRALGVEPEEAVMIGD----DLVDDVGGAQAC 217 (258)
T ss_pred EEECCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEECC----CCCCCCCCHHHH
T ss_conf 7625741122137871160079999864228778984188858998886625888102688647----345466403201
Q ss_pred CCCCCC
Q ss_conf 753231
Q gi|254780902|r 284 GSLGLM 289 (412)
Q Consensus 284 GglGla 289 (412)
|-.|+.
T Consensus 218 GMrg~~ 223 (258)
T TIGR01458 218 GMRGVQ 223 (258)
T ss_pred CCEEEE
T ss_conf 412355
No 48
>KOG4126 consensus
Probab=58.14 E-value=11 Score=17.28 Aligned_cols=70 Identities=20% Similarity=0.123 Sum_probs=42.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHC----CCCCCEEEEEE-CCHHHHHHHCCCCCHHHHHHHH-HCCE-EEECCCC
Q ss_conf 38679975986308999999999841----79984489982-7489986528627789999998-6593-8872644
Q gi|254780902|r 7 TKPVVSLDGDEMTRIIWQLIQENLIH----PYLDIKIEYFD-LSIQNRDLTDDQVTIDAAHAIK-NCGV-GIKCATI 76 (412)
Q Consensus 7 ~~~Iv~l~GDgiG~Ei~~~~l~vl~~----~~~~i~~e~~d-~G~~~~d~tg~~l~~da~eaik-~~~v-~lkg~~~ 76 (412)
+|.|..+=|||||+--+.++.--... ..-.+.||.|. +|...---.+.++||.+..|-. -|+| .-.|+++
T Consensus 72 aKNVIlFlgDGMg~~TvtAaRi~~g~~~~gee~~L~fe~FP~~GlSKTy~~d~qVpDSA~tATAylcGvK~n~gtiG 148 (529)
T KOG4126 72 AKNVILFLGDGMGVSTVTAARILKGQLNLGEETQLAFDRFPYTGLSKTYCSDKQVPDSACTATAYLCGVKTNYGTIG 148 (529)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 73389995279875566786664266566867503420376522123222566678426767777633533322446
No 49
>PRK03767 TrpR binding protein WrbA; Provisional
Probab=54.84 E-value=15 Score=16.49 Aligned_cols=71 Identities=11% Similarity=0.077 Sum_probs=44.6
Q ss_pred CCCCCCCCCEEEECCCCCCHHHHHHHHHHH-HCCCCCCEEEEEE--CCHHHHHH----HCCCCCHHHHHHHHHCCEEEEC
Q ss_conf 974011386799759863089999999998-4179984489982--74899865----2862778999999865938872
Q gi|254780902|r 1 MKKIKVTKPVVSLDGDEMTRIIWQLIQENL-IHPYLDIKIEYFD--LSIQNRDL----TDDQVTIDAAHAIKNCGVGIKC 73 (412)
Q Consensus 1 m~Kikm~~~Iv~l~GDgiG~Ei~~~~l~vl-~~~~~~i~~e~~d--~G~~~~d~----tg~~l~~da~eaik~~~v~lkg 73 (412)
|.||. |+|--+-|-...+-+++.+=. .....++.+..+. +..+...+ .....|.-+.+.+..+|++++|
T Consensus 1 M~kI~----IvyyS~~G~t~~lA~~ia~Ga~~~~G~ev~l~~v~e~~~~~~~~~~~~~~~~~~~~a~~~dL~~aDgiifG 76 (200)
T PRK03767 1 MAKVL----VLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPQELADYDAIIFG 76 (200)
T ss_pred CCCEE----EEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHCCEEEEC
T ss_conf 97089----99938998899999999976655179779998555648888997436876667883789999737722632
Q ss_pred CC
Q ss_conf 64
Q gi|254780902|r 74 AT 75 (412)
Q Consensus 74 ~~ 75 (412)
.-
T Consensus 77 sP 78 (200)
T PRK03767 77 TP 78 (200)
T ss_pred CC
T ss_conf 77
No 50
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=45.94 E-value=20 Score=15.62 Aligned_cols=37 Identities=27% Similarity=0.256 Sum_probs=28.7
Q ss_pred CCCCCCCCCEEEECCCCC--CHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 974011386799759863--089999999998417998448998
Q gi|254780902|r 1 MKKIKVTKPVVSLDGDEM--TRIIWQLIQENLIHPYLDIKIEYF 42 (412)
Q Consensus 1 m~Kikm~~~Iv~l~GDgi--G~Ei~~~~l~vl~~~~~~i~~e~~ 42 (412)
|+||. |+|.|=|. |-||-++++-.|-..+..++|.-|
T Consensus 1 mkkva-----ViLSGCGv~DGSEIhEavltllaL~r~ga~~~cf 39 (217)
T PRK11780 1 MKKIA-----VILSGCGVYDGSEIHEAVLTLLALDRAGAEAQCF 39 (217)
T ss_pred CCEEE-----EEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 96189-----9960788877408999999999998679867997
No 51
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase; InterPro: IPR010946 This entry represents geranylgeranylglyceryl phosphate synthase which catalyses the first committed step in the synthesis of ether-linked membrane lipids in archaea ..
Probab=42.06 E-value=16 Score=16.32 Aligned_cols=13 Identities=23% Similarity=0.072 Sum_probs=4.6
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 6999999985496
Q gi|254780902|r 248 LIDDMVASSIKWS 260 (412)
Q Consensus 248 ~vD~~~~~lv~~P 260 (412)
+.|+...--++|-
T Consensus 71 ~ADAvlFmSlLNS 83 (212)
T TIGR01769 71 KADAVLFMSLLNS 83 (212)
T ss_pred HHHHHHHHHHHCC
T ss_conf 8659888886536
No 52
>PRK10364 sensor protein ZraS; Provisional
Probab=40.67 E-value=25 Score=15.11 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=8.2
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 72799999999999
Q gi|254780902|r 326 NSIASIFAWTRGLL 339 (412)
Q Consensus 326 NP~a~IlS~ammL~ 339 (412)
||++.|...+-+|.
T Consensus 251 NPLtsI~G~AqlL~ 264 (455)
T PRK10364 251 NPLSSIKGLAKYFA 264 (455)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 64999999999986
No 53
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; InterPro: IPR005995 This 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (iPGAM) is a metalloenzyme found particularly in eubacteria and higher plants. It is distantly related to archaeal iPGAM (IPR004456 from INTERPRO) and distinct from the unrelated cofactor-dependent PGAM (PIRSF001490 from PIRSF). Activity has been demonstrated for proteins from a variety of organisms, including Pseudomonas syringae pv. tomato , Bacillus subtilis , Bacillus stearothermophilus , maize , castor bean , and Trypanosoma brucei . The structure of the B. stearothermophilus enzyme (PDB:1EJJ) has two domains . Residues 1-76 and 311-511 form the phosphatase domain, containing the active site residue and two metal-binding sites. This domain is similar to alkaline phosphatase (PDB:1ALK) and arylsulphatase (PDB:1AUK), which are members of the SCOP alkaline phosphatase-like superfamily, but there is meagre sequence similarity outside of the metal-binding segments. Residues 77-310 form the phosphotransferase domain, which is poorly conserved (or perhaps unrelated) in the archaeal enzymes.; GO: 0004619 phosphoglycerate mutase activity, 0006007 glucose catabolic process.
Probab=40.54 E-value=17 Score=16.16 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=16.4
Q ss_pred CCCCHHHHHCCCCCCCCEEHHHHHHHHHHHHHH
Q ss_conf 981632300157888713099999999999999
Q gi|254780902|r 368 GFMTKDLALLIGPEQDWLSTTDFIEKISDNLRD 400 (412)
Q Consensus 368 G~~T~DLg~~~~~~~~~~~T~ef~daI~~~l~~ 400 (412)
.+-||||... =|..++||+|++.|++
T Consensus 373 kVaTYDl~P~-------MSa~avTd~~~~~~~~ 398 (529)
T TIGR01307 373 KVATYDLQPE-------MSAKAVTDAVLEAIAQ 398 (529)
T ss_pred CCCCCCCCHH-------HHHHHHHHHHHHHHHC
T ss_conf 8888766421-------0018899999999836
No 54
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=39.23 E-value=19 Score=15.83 Aligned_cols=81 Identities=16% Similarity=0.200 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH------HHHHHHCCCCCHHHHHCCCCCCCCEEHHHHHHHHHHHH
Q ss_conf 472799999999999863025730389999999999------99999879816323001578887130999999999999
Q gi|254780902|r 325 TNSIASIFAWTRGLLHRAKLDENAELKKFAENLERV------CIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKISDNL 398 (412)
Q Consensus 325 ~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~A------v~~~l~~G~~T~DLg~~~~~~~~~~~T~ef~daI~~~l 398 (412)
+|--+.|.|+-|=|---. +.++++|.+....+..+ |...++.|.-+|=|.......-.+.++.+|+..+...|
T Consensus 209 W~hGSVIrSWLldLt~~A-f~~d~~L~q~~g~v~dSGEGrWTv~~aldlgvpaPVia~al~~Rf~S~~~d~f~~kvlaal 287 (300)
T COG1023 209 WNHGSVIRSWLLDLTAEA-FKKDPDLDQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQDDTFAGKVLAAL 287 (300)
T ss_pred HHCCCHHHHHHHHHHHHH-HHHCCCHHHHCCEECCCCCCEEEHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 827645999999999999-8548887776176345887506668777638981599999999975032246788999999
Q ss_pred HHHHHHHH
Q ss_conf 99998730
Q gi|254780902|r 399 RDALQKNL 406 (412)
Q Consensus 399 ~~~l~~~~ 406 (412)
........
T Consensus 288 R~~FGgH~ 295 (300)
T COG1023 288 RNEFGGHA 295 (300)
T ss_pred HHHHCCCC
T ss_conf 98747755
No 55
>KOG1222 consensus
Probab=38.78 E-value=11 Score=17.31 Aligned_cols=36 Identities=14% Similarity=-0.053 Sum_probs=29.9
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 699999998549665188632102326788887750
Q gi|254780902|r 248 LIDDMVASSIKWSGGYIWACKNYDGDVQSDIVAQGF 283 (412)
Q Consensus 248 ~vD~~~~~lv~~P~~fVivt~NL~GDIlSD~aa~l~ 283 (412)
+-|.+.|+++++-.|--=+|.|+|=|++-|+++.+.
T Consensus 479 ~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~ 514 (791)
T KOG1222 479 SRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAK 514 (791)
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 224499999997660455588899999999999861
No 56
>TIGR02475 CobW cobalamin biosynthesis protein CobW; InterPro: IPR012824 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobW proteins, which are generally found proximal to the trimeric cobaltochelatase subunit CobN, an essential protein for vitamin B12 (cobalamin) biosynthesis . They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids.; GO: 0009236 cobalamin biosynthetic process.
Probab=35.47 E-value=26 Score=14.95 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHCCC
Q ss_conf 089999999998631002
Q gi|254780902|r 218 DGRFKNIFNEIFEAEFKN 235 (412)
Q Consensus 218 dglf~~~~~eva~~~~~~ 235 (412)
.|.|-.=...+.++.-.|
T Consensus 142 AG~fA~D~dav~aQR~aD 159 (349)
T TIGR02475 142 AGRFAADPDAVDAQRAAD 159 (349)
T ss_pred CCCCCCCHHHHHHHHHHC
T ss_conf 588854378999998608
No 57
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II; InterPro: IPR011278 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site . The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH . This entry represents type I homodimeric citrate synthase enzymes (predominantly from Gram-positive bacteria and archaea), as well as 2-methylcitrate synthase; some enzyme in this entry may be bifunctional citrate synthase/2-methylcitrate synthase enzymes. Members of this family appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesise 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme . 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive . ; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process, 0005737 cytoplasm.
Probab=34.82 E-value=30 Score=14.53 Aligned_cols=118 Identities=15% Similarity=0.138 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHCC------CCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCC----EEEECCCCCC---H
Q ss_conf 243699999998549------6651-886321023267888877507532312431279875----1442122220---3
Q gi|254780902|r 245 THRLIDDMVASSIKW------SGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGK----TMETEAAHGT---V 310 (412)
Q Consensus 245 ~~~~vD~~~~~lv~~------P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~----~~mfEp~HGS---A 310 (412)
....+++|=+-||+. =.-| .+|| .-=|||+=|+++|.||-+-+-.-| |+ ..||+=++=+ |
T Consensus 173 ~~~~~~a~~~aLiLyAeHe~NASTFaarv~----aSTLSD~YSaitaAIGALkGPLHG--GAnE~vm~~l~ei~~pd~~a 246 (386)
T TIGR01800 173 SKEEEKAMDIALILYAEHELNASTFAARVI----ASTLSDIYSAITAAIGALKGPLHG--GANEAVMKMLDEIGDPDDKA 246 (386)
T ss_pred CHHHHHHHCCHHHHHHHCCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHCCHHHHH
T ss_conf 979998613001134223885667999999----988888999999999970687503--18999999997523844458
Q ss_pred HHHHHHHHCC-CC-----------CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 4556554248-77-----------5547279999999999986302573038999999999999999879816
Q gi|254780902|r 311 TRHYRQHQQG-KE-----------TSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMT 371 (412)
Q Consensus 311 Pd~~g~~iaG-k~-----------iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T 371 (412)
-++..+.|+- |. .. .|=+-||. -+-++|+...++.+|-+.+.+||+.+.+.+.++..-
T Consensus 247 E~~~~~~l~~GKEriMGFGHRVYk~~-DPRa~~lk--~~a~~L~~~~G~~K~Yei~~~~E~~~~~~~g~Kgl~ 316 (386)
T TIGR01800 247 EAWIRKKLENGKERIMGFGHRVYKTY-DPRAKILK--EYAKKLSAKKGESKWYEISERIEDVMEKALGEKGLY 316 (386)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCCCC-CCCHHHHH--HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 89999999708966840575324689-96278999--999999841688723688899999999972147889
No 58
>pfam03260 Lipoprotein_11 Lepidopteran low molecular weight (30 kD) lipoprotein.
Probab=33.72 E-value=16 Score=16.33 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=22.6
Q ss_pred ECHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 742677751089999999998631002454
Q gi|254780902|r 209 TKDTILKSYDGRFKNIFNEIFEAEFKNQFD 238 (412)
Q Consensus 209 ~KaNVlk~tdglf~~~~~eva~~~~~~~~~ 238 (412)
-|.|+|.+...||..-..++.+++|+.+|.
T Consensus 67 ~~rN~meyaYkLW~~~~kdIVk~yFP~~Fr 96 (253)
T pfam03260 67 GKRNTMEYAYQLWVGEGKDIVKKYFPIQFR 96 (253)
T ss_pred CCCCHHHHHHHHHHCCCHHHHHHHCCHHHH
T ss_conf 861089999998735524578874849898
No 59
>TIGR01980 sufB FeS assembly protein SufB; InterPro: IPR010231 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufB, which is part of the SUF system and forms a complex with SufBCD.; GO: 0005515 protein binding, 0016226 iron-sulfur cluster assembly.
Probab=32.82 E-value=21 Score=15.52 Aligned_cols=14 Identities=7% Similarity=-0.185 Sum_probs=9.0
Q ss_pred EEEECCCCCCCCC-CEE
Q ss_conf 9985056663001-014
Q gi|254780902|r 129 IIGRHAFGDQYRA-TDF 144 (412)
Q Consensus 129 vivREnteg~Y~g-ie~ 144 (412)
.-||-|.++. | .|+
T Consensus 206 tYFRIN~~~~--GQFEr 220 (469)
T TIGR01980 206 TYFRINSENT--GQFER 220 (469)
T ss_pred CCEECCCCCC--CCCEE
T ss_conf 0000284778--86325
No 60
>KOG1349 consensus
Probab=31.99 E-value=18 Score=15.96 Aligned_cols=12 Identities=25% Similarity=0.224 Sum_probs=5.5
Q ss_pred CEEEEECHHHHH
Q ss_conf 899997426777
Q gi|254780902|r 204 PLYLSTKDTILK 215 (412)
Q Consensus 204 kvt~v~KaNVlk 215 (412)
++-+=+-+||+-
T Consensus 132 rlltDe~SNIlI 143 (309)
T KOG1349 132 RLLTDEGSNILI 143 (309)
T ss_pred HHCCCCCCCEEE
T ss_conf 431367776799
No 61
>PRK13557 histidine kinase; Provisional
Probab=31.79 E-value=34 Score=14.23 Aligned_cols=13 Identities=8% Similarity=-0.521 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999986302
Q gi|254780902|r 332 FAWTRGLLHRAKL 344 (412)
Q Consensus 332 lS~ammL~hlg~~ 344 (412)
.....||+.+|..
T Consensus 427 ~~~~~~L~~~G~~ 439 (538)
T PRK13557 427 ELARMILEDFGYR 439 (538)
T ss_pred HHHHHHHHHCCCE
T ss_conf 9999999976999
No 62
>PRK10116 universal stress protein UspC; Provisional
Probab=31.17 E-value=35 Score=14.16 Aligned_cols=27 Identities=15% Similarity=0.010 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECH
Q ss_conf 468899999999998659989999742
Q gi|254780902|r 185 DSIRNFARAAMQYALARQLPLYLSTKD 211 (412)
Q Consensus 185 ~~i~Riar~AF~~A~~~~~kvt~v~Ka 211 (412)
..++++.+.|.+.|+..+.+++++|=.
T Consensus 14 ~~S~~~i~kA~~lA~~~~AklslihV~ 40 (142)
T PRK10116 14 PESQQLLAKAVSIARPVNGKISLITLA 40 (142)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 506999999999999819989999993
No 63
>pfam09653 consensus
Probab=30.14 E-value=34 Score=14.24 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 999999999999998798163230
Q gi|254780902|r 352 KFAENLERVCIKTVEDGFMTKDLA 375 (412)
Q Consensus 352 ~~A~~i~~Av~~~l~~G~~T~DLg 375 (412)
+++..+-.|..+.++.|..|--=|
T Consensus 30 dA~p~~i~Aa~RLf~KGLitq~DG 53 (75)
T pfam09653 30 DAAPELIAAAKRLFDKGLITQPDG 53 (75)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 699999999999998588218888
No 64
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit; InterPro: IPR006317 These sequences represent the Proteobacterial and mitochondrial type of the Rieske [2Fe-2S] iron-sulphur subunit as found in ubiquinol-cytochrome c reductase. Not included in this group are the Rieske iron-sulphur protein as found in the cytochrome b6-f complex of the Cyanobacteria and chloroplasts. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0006118 electron transport.
Probab=29.56 E-value=24 Score=15.16 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=16.1
Q ss_pred EEECCCCCCHHHHHHHHHCCCCCCCC-H
Q ss_conf 44212222034556554248775547-2
Q gi|254780902|r 301 METEAAHGTVTRHYRQHQQGKETSTN-S 327 (412)
Q Consensus 301 ~mfEp~HGSAPd~~g~~iaGk~iA~N-P 327 (412)
.-|=|+|||-=| .+|+... + |
T Consensus 150 GffCPCHGS~yD-----~aGRv~k-G~P 171 (192)
T TIGR01416 150 GFFCPCHGSHYD-----LAGRVRK-GVP 171 (192)
T ss_pred CEEECCCCCCCC-----CCCCEEE-CCC
T ss_conf 705068889605-----5542023-752
No 65
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; InterPro: IPR012689 This entry represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway.; GO: 0018802 24-dihydroxyhept-2-ene-17-dioate aldolase activity, 0010124 phenylacetate catabolic process.
Probab=29.22 E-value=38 Score=13.95 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=27.0
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHC----CCCCHHHH
Q ss_conf 998630257303899999999999999987----98163230
Q gi|254780902|r 338 LLHRAKLDENAELKKFAENLERVCIKTVED----GFMTKDLA 375 (412)
Q Consensus 338 L~hlg~~~~~~~~~~~A~~i~~Av~~~l~~----G~~T~DLg 375 (412)
|=|+| +|.-+|--++|++||.+.... |+.|.|..
T Consensus 178 mGH~G----nPsHPEV~~AI~~Ai~~i~a~gKAaGIL~~D~~ 215 (249)
T TIGR02311 178 MGHLG----NPSHPEVQDAIDDAIERIKAAGKAAGILTADEK 215 (249)
T ss_pred CCCCC----CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 15688----869615899999999999854898654543578
No 66
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=28.67 E-value=38 Score=13.89 Aligned_cols=131 Identities=15% Similarity=0.131 Sum_probs=59.3
Q ss_pred HHHHHHHCCCCEEE---EECH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCEE---E
Q ss_conf 99999865998999---9742--67775108999999999863100245423200024369999999854966518---8
Q gi|254780902|r 194 AMQYALARQLPLYL---STKD--TILKSYDGRFKNIFNEIFEAEFKNQFDELGITYTHRLIDDMVASSIKWSGGYI---W 265 (412)
Q Consensus 194 AF~~A~~~~~kvt~---v~Ka--NVlk~tdglf~~~~~eva~~~~~~~~~~~~i~~~~~~vD~~~~~lv~~P~~fV---i 265 (412)
.|+..++-+-.+.+ ++-+ +|+- -+-.|.+.+.+-.. .+|+..+|.+||. -+.-+.+.|++-...| |
T Consensus 123 vle~Mq~~gmpLlvHGEvt~~~vDifd-rE~~Fi~~vl~pl~----~~fP~LKIV~EHi-TT~dav~~v~~~~~nlaATI 196 (344)
T COG0418 123 VLEAMQKIGMPLLVHGEVTDAEVDIFD-REAAFIESVLEPLR----QRFPKLKIVLEHI-TTKDAVEYVKDANNNLAATI 196 (344)
T ss_pred HHHHHHHCCCEEEEECCCCCCCCCCHH-HHHHHHHHHHHHHH----HHCCCCEEEEEEE-CCHHHHHHHHHCCCCEEEEE
T ss_conf 999999719868970465775456113-57878999999998----6587636998871-50889999996486504673
Q ss_pred EECCCCCHHHHHHHHHHHCCCC-----------------CCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCHH
Q ss_conf 6321023267888877507532-----------------31243127987514421222203455655424877554727
Q gi|254780902|r 266 ACKNYDGDVQSDIVAQGFGSLG-----------------LMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSI 328 (412)
Q Consensus 266 vt~NL~GDIlSD~aa~l~GglG-----------------lapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~NP~ 328 (412)
-+.-|+ =..-..++||+- |..-|.=|.. .++|- --|||-- .--|.-+ +.+
T Consensus 197 T~hHL~----~nrnd~l~Ggi~Ph~fClPilKr~~hr~AL~~aa~sg~~--kfFlG--tDSAPH~----~~~Ke~~-cgc 263 (344)
T COG0418 197 TPHHLL----LNRNDMLVGGIRPHLFCLPILKRETHREALREAATSGHP--KFFLG--TDSAPHA----RSRKESA-CGC 263 (344)
T ss_pred EHHHEE----EEHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCC--CEEEC--CCCCCCC----CCCCCCC-CCC
T ss_conf 145602----426566327878613551200654569999999846897--27715--8988886----5441005-666
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999998630
Q gi|254780902|r 329 ASIFAWTRGLLHRAK 343 (412)
Q Consensus 329 a~IlS~ammL~hlg~ 343 (412)
|=++|+--.|..+.+
T Consensus 264 AG~fsap~al~~~Ae 278 (344)
T COG0418 264 AGIFSAPFALPLYAE 278 (344)
T ss_pred CCCCCCHHHHHHHHH
T ss_conf 310153768999999
No 67
>pfam00245 Alk_phosphatase Alkaline phosphatase.
Probab=28.28 E-value=39 Score=13.85 Aligned_cols=56 Identities=21% Similarity=0.133 Sum_probs=33.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCC-C----CCCEEEEEE-CCHHHHHHHCCCCCHHHHH
Q ss_conf 386799759863089999999998417-9----984489982-7489986528627789999
Q gi|254780902|r 7 TKPVVSLDGDEMTRIIWQLIQENLIHP-Y----LDIKIEYFD-LSIQNRDLTDDQVTIDAAH 62 (412)
Q Consensus 7 ~~~Iv~l~GDgiG~Ei~~~~l~vl~~~-~----~~i~~e~~d-~G~~~~d~tg~~l~~da~e 62 (412)
+|.|.++=|||||+--+.++.-..... . -.+.|+.++ .|...-.-.+..+||++.-
T Consensus 1 AKNVIlfIgDGMg~~~~taaR~~~~~~~g~~~~~~L~~d~~p~~Gl~~T~s~d~~vtDSAa~ 62 (421)
T pfam00245 1 AKNVILFIGDGMGVSTITAARILKGQAKGLPGPETLAMDRFPLVGLSKTYNVDKQVTDSAAT 62 (421)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHH
T ss_conf 95499997179999999999998468788876553431148720577315588977860899
No 68
>TIGR01819 F420_cofD LPPG:Fo 2-phospho-L-lactate transferase; InterPro: IPR010115 This entry represents LPPG:Fo 2-phospho-L-lactate transferase (CofD), which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. .
Probab=28.02 E-value=39 Score=13.82 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHCCEEEECCC
Q ss_conf 277899999986593887264
Q gi|254780902|r 55 QVTIDAAHAIKNCGVGIKCAT 75 (412)
Q Consensus 55 ~l~~da~eaik~~~v~lkg~~ 75 (412)
..+.+++|||++.+.+|.||=
T Consensus 223 ~~a~~a~EAi~~~~~vligPS 243 (359)
T TIGR01819 223 KAAPEAIEAIRDADVVLIGPS 243 (359)
T ss_pred CCCHHHHHHHHCCCEEEECCC
T ss_conf 688789998605998997786
No 69
>TIGR02061 aprA adenylylsulfate reductase, alpha subunit; InterPro: IPR011803 During dissimilatory sulphate reduction or sulphur oxidation, adenylylsulphate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulphite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. This entry describes the alpha subunit of APS reductase, which shares a common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins..
Probab=27.05 E-value=36 Score=14.07 Aligned_cols=33 Identities=12% Similarity=0.050 Sum_probs=11.7
Q ss_pred HHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998630--2573038999999999999999
Q gi|254780902|r 333 AWTRGLLHRAK--LDENAELKKFAENLERVCIKTV 365 (412)
Q Consensus 333 S~ammL~hlg~--~~~~~~~~~~A~~i~~Av~~~l 365 (412)
|+--|.||..+ .+...--.+.+..+++++.+=+
T Consensus 470 AaKaavr~ildG~k~~~~~~da~~Eelkk~~Y~Pm 504 (651)
T TIGR02061 470 AAKAAVRYILDGKKEGKEVSDAVVEELKKEVYKPM 504 (651)
T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHH
T ss_conf 99999777533678888543889999999851226
No 70
>TIGR01472 gmd GDP-mannose 4,6-dehydratase; InterPro: IPR006368 This family represent GDP-mannose 4,6-dehydratase, also known as GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of Escherichia coli. Excluded from this family are members of the clade that are poorly related because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase .; GO: 0008446 GDP-mannose 46-dehydratase activity, 0019673 GDP-mannose metabolic process, 0005622 intracellular.
Probab=27.05 E-value=41 Score=13.72 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHC---CCCCEE
Q ss_conf 89999999999865998999974267775108999999999863100245423200024369999999854---966518
Q gi|254780902|r 188 RNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYTHRLIDDMVASSIK---WSGGYI 264 (412)
Q Consensus 188 ~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i~~~~~~vD~~~~~lv~---~P~~fV 264 (412)
|+|.|.+-+.+.....++++ +|+--. |+|...- -||-+ |||.. .|+.||
T Consensus 203 RKITra~a~I~~G~~~~lyL---GNLdA~-----RDWGhAk------------------DYV~a--MWLMLQ~d~P~DYV 254 (365)
T TIGR01472 203 RKITRAAAKIKLGLQEKLYL---GNLDAK-----RDWGHAK------------------DYVEA--MWLMLQQDKPDDYV 254 (365)
T ss_pred HHHHHHHHHHHCCCCCEEEE---CCCCCC-----CCCCCHH------------------HHHHH--HHHHCCCCCCCCEE
T ss_conf 58999999986156311120---275441-----0665056------------------69999--88752786889768
Q ss_pred EEECC
Q ss_conf 86321
Q gi|254780902|r 265 WACKN 269 (412)
Q Consensus 265 ivt~N 269 (412)
|+|..
T Consensus 255 iATG~ 259 (365)
T TIGR01472 255 IATGE 259 (365)
T ss_pred EECCC
T ss_conf 87573
No 71
>COG1542 Uncharacterized conserved protein [Function unknown]
Probab=26.67 E-value=41 Score=13.73 Aligned_cols=52 Identities=12% Similarity=-0.001 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHCCCC-CCEEEEEEC-CHHHH-----HHHCCCCCHHHHHHHHHCCEE
Q ss_conf 08999999999841799-844899827-48998-----652862778999999865938
Q gi|254780902|r 19 TRIIWQLIQENLIHPYL-DIKIEYFDL-SIQNR-----DLTDDQVTIDAAHAIKNCGVG 70 (412)
Q Consensus 19 G~Ei~~~~l~vl~~~~~-~i~~e~~d~-G~~~~-----d~tg~~l~~da~eaik~~~v~ 70 (412)
|.-+|..+.+..+.-.+ |=+|.++-| |.+-. -.-...+|.+...++++-+..
T Consensus 60 Gk~l~elv~d~Id~~~ipPeeW~hdrwvgSeiIsmi~~~~l~~~vpe~we~~L~ERgla 118 (593)
T COG1542 60 GKKLMELVADMIDLGKIPPEEWAHDRWVGSEIISMIELLELTGRVPEDWELALKERGLA 118 (593)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCH
T ss_conf 89999999999862658903200001025899999999987068718899999863311
No 72
>pfam02169 LPP20 LPP20 lipoprotein precursor.
Probab=26.30 E-value=29 Score=14.63 Aligned_cols=34 Identities=18% Similarity=0.051 Sum_probs=12.7
Q ss_pred HHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHH
Q ss_conf 888775075323124312798751442122220345
Q gi|254780902|r 277 DIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTR 312 (412)
Q Consensus 277 D~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd 312 (412)
-.+|.++=|-+-+|+.-++.+. .++-|+..| ||+
T Consensus 12 VvAA~~~vGC~~~~k~GvS~sn-ka~Ke~~KG-AP~ 45 (168)
T pfam02169 12 VIAAMVIVGCSHAPKSGISKSN-KAYKEATKG-APD 45 (168)
T ss_pred HHHHHHEEECCCCCCCCCCCCH-HHHHHHHCC-CCC
T ss_conf 7778640215789865736236-899998559-961
No 73
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=26.07 E-value=43 Score=13.60 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 14688999999999986599899997
Q gi|254780902|r 184 DDSIRNFARAAMQYALARQLPLYLST 209 (412)
Q Consensus 184 ~~~i~Riar~AF~~A~~~~~kvt~v~ 209 (412)
...++++.|.|+++|...+.+++.+|
T Consensus 9 s~~s~~lir~a~rlA~~~~a~l~vl~ 34 (124)
T cd01987 9 GPNAERLIRRAARLADRLKAPWYVVY 34 (124)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 85079999999999996499899999
No 74
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=25.97 E-value=36 Score=14.05 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHCCCCEEE
Q ss_conf 89999999999865998999
Q gi|254780902|r 188 RNFARAAMQYALARQLPLYL 207 (412)
Q Consensus 188 ~Riar~AF~~A~~~~~kvt~ 207 (412)
++++..|.+.|++.+.++.-
T Consensus 58 ~~L~~~al~~ar~~g~kiiP 77 (99)
T COG2388 58 QKLVEKALEEAREAGLKIIP 77 (99)
T ss_pred HHHHHHHHHHHHHCCCEECC
T ss_conf 99999999999981985733
No 75
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.75 E-value=40 Score=13.80 Aligned_cols=11 Identities=9% Similarity=0.268 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999999
Q gi|254780902|r 188 RNFARAAMQYA 198 (412)
Q Consensus 188 ~Riar~AF~~A 198 (412)
+++.|.-|+.+
T Consensus 172 ~~~~~~~~e~g 182 (195)
T COG4990 172 RKISHTYLEDG 182 (195)
T ss_pred HHHHHHHHHHH
T ss_conf 12238899987
No 76
>pfam05378 Hydant_A_N Hydantoinase/oxoprolinase N-terminal region. This family is found at the N-terminus of the pfam01968 family.
Probab=24.40 E-value=46 Score=13.41 Aligned_cols=10 Identities=0% Similarity=-0.074 Sum_probs=3.6
Q ss_pred HHHHHHCCCC
Q ss_conf 9999865998
Q gi|254780902|r 195 MQYALARQLP 204 (412)
Q Consensus 195 F~~A~~~~~k 204 (412)
.+-.++.+-+
T Consensus 139 ~~~l~~~gv~ 148 (175)
T pfam05378 139 LKELKDAGVE 148 (175)
T ss_pred HHHHHHCCCC
T ss_conf 9999977998
No 77
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=24.22 E-value=46 Score=13.39 Aligned_cols=41 Identities=17% Similarity=0.077 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 727999999999998630257303899999999999999987
Q gi|254780902|r 326 NSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVED 367 (412)
Q Consensus 326 NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~ 367 (412)
+|++-=.++..+ --|..+-++..+.++|..+-++....++.
T Consensus 533 ~~S~na~~~~~L-~~Ls~ltg~~~y~e~A~~~l~a~~~~~~~ 573 (667)
T COG1331 533 TPSGNAVAAQAL-LRLSLLTGDARYLEAAEDILQAFAGLAER 573 (667)
T ss_pred CCCHHHHHHHHH-HHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 778779999999-99986538311899999999999999986
No 78
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=23.43 E-value=48 Score=13.29 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=12.7
Q ss_pred HHHHHHHHHCCCCEEE
Q ss_conf 9999999865998999
Q gi|254780902|r 192 RAAMQYALARQLPLYL 207 (412)
Q Consensus 192 r~AF~~A~~~~~kvt~ 207 (412)
.-||+.|++.+|.+.+
T Consensus 5 ~eal~~Ak~e~KpIfl 20 (124)
T cd02955 5 EEAFEKARREDKPIFL 20 (124)
T ss_pred HHHHHHHHHCCCCEEE
T ss_conf 9999999972998899
No 79
>cd07996 WGR_MMR_like WGR domain of molybdate metabolism regulator and related proteins. The WGR domain is found in the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, as well as in various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain appears to occur in single-domain proteins and in a variety of domain architectures, together with ATP-dependent DNA ligase domains, WD40 repeats, leucine-rich repeats, and other domains. It has been proposed to function as a nucleic acid binding domain.
Probab=23.43 E-value=41 Score=13.74 Aligned_cols=10 Identities=20% Similarity=0.049 Sum_probs=4.3
Q ss_pred EEEECCCCCH
Q ss_conf 8863210232
Q gi|254780902|r 264 IWACKNYDGD 273 (412)
Q Consensus 264 Vivt~NL~GD 273 (412)
+-+.+||||+
T Consensus 19 i~l~~~LFG~ 28 (74)
T cd07996 19 IELEGDLFGE 28 (74)
T ss_pred EEEECCCCCC
T ss_conf 9982466784
No 80
>TIGR01751 crot-CoA-red crotonyl-CoA reductase; InterPro: IPR010085 Crotonyl-CoA reductase is responsible for the conversion of crotonyl-CoA to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate , . In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae ..
Probab=22.56 E-value=19 Score=15.88 Aligned_cols=14 Identities=7% Similarity=-0.107 Sum_probs=6.4
Q ss_pred CCEEEEECHHHHHH
Q ss_conf 98999974267775
Q gi|254780902|r 203 LPLYLSTKDTILKS 216 (412)
Q Consensus 203 ~kvt~v~KaNVlk~ 216 (412)
|++.-.|=||++..
T Consensus 339 KRiqGSHfANlre~ 352 (409)
T TIGR01751 339 KRIQGSHFANLREA 352 (409)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 11244378889999
No 81
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase; InterPro: IPR004639 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamate-1-semialdehyde (GSA) aminotransferase (5.4.3.8 from EC), which catalyse a transamination reaction to produce 5-aminoaevulinic acid during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme has a high degree of similarity to amino acid transaminases, and is classed as a class III aminotransferase.; GO: 0042286 glutamate-1-semialdehyde 21-aminomutase activity, 0033014 tetrapyrrole biosynthetic process.
Probab=22.52 E-value=50 Score=13.18 Aligned_cols=195 Identities=17% Similarity=0.134 Sum_probs=92.8
Q ss_pred CCCCCCCC-EEEECCCCEEEEEEECCC-CCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEE----
Q ss_conf 66630010-147778845999995488-861025541246653010111051468899999999998659989999----
Q gi|254780902|r 135 FGDQYRAT-DFQFPSKGKLILKFVGDD-GQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLS---- 208 (412)
Q Consensus 135 teg~Y~gi-e~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v---- 208 (412)
.||-|-|. |..-+..|.....+- . |.+.-..+.......-....+|..+.. +.+|+- .+.+|-+|
T Consensus 138 FeGcYHGh~D~lLv~AGSGaaT~g--~CG~P~SpGvP~~~~k~Tl~~PYND~~a~----~~~f~~---~G~~iAgvIvEP 208 (434)
T TIGR00713 138 FEGCYHGHHDALLVKAGSGAATLG--SCGLPTSPGVPEDFAKLTLVLPYNDLEAL----EEAFEE---YGEEIAGVIVEP 208 (434)
T ss_pred ECCCCCCCHHHHCCCCCCHHHCCC--CCCCCCCCCCHHHHHHHCCCCCCCCHHHH----HHHHHH---CCCCEEEEEECC
T ss_conf 617641012320035452101046--88778888870114311340451738999----999986---798343788612
Q ss_pred --ECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHH--HHHHCC--CCCE-EEEECCCCCHHHHHHHHH
Q ss_conf --742677751089999999998631002454232000243699999--998549--6651-886321023267888877
Q gi|254780902|r 209 --TKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYTHRLIDDMV--ASSIKW--SGGY-IWACKNYDGDVQSDIVAQ 281 (412)
Q Consensus 209 --~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i~~~~~~vD~~~--~~lv~~--P~~f-Vivt~NL~GDIlSD~aa~ 281 (412)
--.+|..= ..=|++-.+++-+++ |..+ +.|=.. -++-+. .+.| |-+=-=-||=||.
T Consensus 209 v~GNmGvvpP-~~eFL~~Lr~lt~e~--------g~LL---I~DEV~TGFRva~~GAQ~yfgV~PDl~~lGKI~G----- 271 (434)
T TIGR00713 209 VAGNMGVVPP-KKEFLEGLRELTEEY--------GALL---IFDEVITGFRVALGGAQEYFGVEPDLTTLGKIIG----- 271 (434)
T ss_pred CCCCCCCCCC-CCCHHHHHHHHHHHH--------CCEE---EEECCCCHHHCCHHHCCHHCCCCCCCEEECHHHC-----
T ss_conf 0257666488-522358999999872--------9577---5502210122133215011378741034233233-----
Q ss_pred HHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHH
Q ss_conf 507532312431279875144212222034556554248775547279999999999986302-5730389999999999
Q gi|254780902|r 282 GFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKL-DENAELKKFAENLERV 360 (412)
Q Consensus 282 l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~NP~a~IlS~ammL~hlg~~-~~~~~~~~~A~~i~~A 360 (412)
|||=+ +|--|. ..++.-=++-|+.= .||.==. ||+||. |+---|+.+-+. +--.++.+.+++|.+.
T Consensus 272 --GGlP~--gA~gGr-rEiM~~laP~G~vY------QAGTlsG-NPlam~-AG~atLk~~~~~~~~Y~~l~~~~~~L~~g 338 (434)
T TIGR00713 272 --GGLPV--GAFGGR-REIMERLAPEGPVY------QAGTLSG-NPLAMA-AGLATLKLLDEEKGVYTELDELAKRLAEG 338 (434)
T ss_pred --CCCCC--EEECCC-HHHHHHHCCCCCCC------CCCCCCC-CHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf --76451--012267-56884317887744------5643555-889999-99999998534888348999999999999
Q ss_pred HHHHHHCC
Q ss_conf 99999879
Q gi|254780902|r 361 CIKTVEDG 368 (412)
Q Consensus 361 v~~~l~~G 368 (412)
+.+++++-
T Consensus 339 ~~e~l~~~ 346 (434)
T TIGR00713 339 LSEVLEDK 346 (434)
T ss_pred HHHHHHHC
T ss_conf 99999827
No 82
>TIGR01826 CofD_related conserved hypothetical protein; InterPro: IPR010119 This entry represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (IPR010115 from INTERPRO), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis..
Probab=21.71 E-value=52 Score=13.08 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=19.1
Q ss_pred CCCCC-HHHHHHHHHCCEEEECCC
Q ss_conf 86277-899999986593887264
Q gi|254780902|r 53 DDQVT-IDAAHAIKNCGVGIKCAT 75 (412)
Q Consensus 53 g~~l~-~da~eaik~~~v~lkg~~ 75 (412)
+.+-+ .+|+|+|++.|.++.||-
T Consensus 176 ~~~a~a~eAv~aI~eADlIilGPG 199 (331)
T TIGR01826 176 DVKALAREAVEAIREADLIILGPG 199 (331)
T ss_pred CCCCCCHHHHHHHHHCCEEEECCC
T ss_conf 848751589999966692787772
No 83
>PRK10310 galactitol-specific PTS system component IIB; Provisional
Probab=21.67 E-value=52 Score=13.08 Aligned_cols=40 Identities=8% Similarity=0.141 Sum_probs=32.9
Q ss_pred CCCCEEEECCCCCCH--HHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 138679975986308--9999999998417998448998274
Q gi|254780902|r 6 VTKPVVSLDGDEMTR--IIWQLIQENLIHPYLDIKIEYFDLS 45 (412)
Q Consensus 6 m~~~Iv~l~GDgiG~--Ei~~~~l~vl~~~~~~i~~e~~d~G 45 (412)
|+|+|++.=|-||.- .+.+.+.+.+...++++++....+.
T Consensus 1 MkKkIlVACGsGIATSTvva~kv~~~~~e~gi~v~i~Q~~i~ 42 (94)
T PRK10310 1 MKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVN 42 (94)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEHH
T ss_conf 995599985883759999999999999985980689997478
No 84
>PRK12350 citrate synthase 2; Provisional
Probab=21.59 E-value=52 Score=13.07 Aligned_cols=99 Identities=11% Similarity=0.100 Sum_probs=50.9
Q ss_pred CCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCC-C-CEEEECCCCC--CHHHHHHHHHCCCC------CC--
Q ss_conf 496651-8863210232678888775075323124312798-7-5144212222--03455655424877------55--
Q gi|254780902|r 258 KWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITAD-G-KTMETEAAHG--TVTRHYRQHQQGKE------TS-- 324 (412)
Q Consensus 258 ~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~-~-~~~mfEp~HG--SAPd~~g~~iaGk~------iA-- 324 (412)
.|..-| +-|+. -=+||+-|+++++||-+-+-.-|-- . ...|++.++- .+.++..+-++.|. =+
T Consensus 169 ~NaSTFaaRvva----ST~adlysai~aaI~aL~GPLHGGAne~v~~ml~~i~~~~~~~~~i~~~l~~~~rimGFGHrVY 244 (352)
T PRK12350 169 MNASTFTARVIA----STGADLAAALSAAIGALSGPLHGGAPGRVLPMLDAIERTGDARGWVKGALDRGERLMGFGHRVY 244 (352)
T ss_pred CCCHHHHHHHHH----CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 781347676554----2687889999999986268755677999999999846700289999999853676556788778
Q ss_pred --CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf --4727999999999998630257303899999999999999987
Q gi|254780902|r 325 --TNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVED 367 (412)
Q Consensus 325 --~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~ 367 (412)
.+|=|.+|-. +++.+.. ...+.+..|+++..+.+.+
T Consensus 245 k~~DPRa~~lk~--~~~~l~~-----~~~~~a~~ie~~~~~~~~~ 282 (352)
T PRK12350 245 RAEDPRARVLRA--AAKRLGA-----PRYEVAEAVEQAALAELRE 282 (352)
T ss_pred CCCCCHHHHHHH--HHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_conf 889935899999--9999744-----2489999999999999998
No 85
>TIGR02434 CobF precorrin-6A synthase (deacetylating); InterPro: IPR012797 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobF precorrin-6A synthase (2.1.1.152 from EC), a pathway-specific enzyme in the aerobic pathway. After precorrin-4 is methylated at C-11 by CobM to produce precorrin-5, the extruded acyl group is then removed in the subsequent step, which also sees a methyl group added at C-1 in a reaction catalysed by CobF. The product of this reaction is precorrin-6A, which is subsequently reduced by an NADH-dependent reductase to precorrin-6B . This entry identifies CobF in high GC Gram-positive, alphaproteobacteria and pseudomonas-related species..
Probab=21.12 E-value=48 Score=13.30 Aligned_cols=45 Identities=22% Similarity=0.092 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEE---EEECCC
Q ss_conf 277899999986593887264489854432112442211045898973296688305---880487
Q gi|254780902|r 55 QVTIDAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREP---IICSNV 117 (412)
Q Consensus 55 ~l~~da~eaik~~~v~lkg~~~tP~~~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp---~~~~~~ 117 (412)
+||-.|++|++..+|.|= | .|+.-||=.+.||+. +|.|- ++.+++
T Consensus 15 ~LT~qAv~AL~~adV~f~-----~---------dKG~~KsdL~~lRr~----I~~r~rPd~~~~g~ 62 (259)
T TIGR02434 15 QLTLQAVEALNHADVFFV-----L---------DKGEDKSDLVELRRE----ICERYRPDVTEPGY 62 (259)
T ss_pred HHHHHHHHHHHCCCEEEE-----E---------CCCCCHHHHHHHHHH----HHHHHCCCCCCCCC
T ss_conf 268999988714838999-----7---------587323799999999----99871789887794
No 86
>pfam08973 DUF1893 Domain of unknown function (DUF1893). This domain is found in a set of hypothetical bacterial proteins. The structure of this protein has recently been solved showing it to belong to the cytidine deaminase superfamily. It has also recently been found that this protein is ADP-ribosylated.
Probab=20.41 E-value=45 Score=13.44 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=16.3
Q ss_pred ECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 3210232678888775075323
Q gi|254780902|r 267 CKNYDGDVQSDIVAQGFGSLGL 288 (412)
Q Consensus 267 t~NL~GDIlSD~aa~l~GglGl 288 (412)
..++|.||+|.-|-.+.-.-|.
T Consensus 68 v~~VyA~VISe~A~~lL~~~gI 89 (134)
T pfam08973 68 IKEVYADIISEPALDLLENAGI 89 (134)
T ss_pred EEEEEHHHHCHHHHHHHHHCCC
T ss_conf 0267532504899999998595
Done!