HHsearch results for GI: 254780902 and protein with PDBid: 3dms_A
>3dms_A Isocitrate dehydrogenase [NADP]; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ...
Probab=100.00 E-value=0 Score=727.18 Aligned_cols=364 Identities=19% Similarity=0.206 Sum_probs=313.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCC-------CCCCEEEEEECCHHHHHHHCC--CCCHHHHHHHHHCCEEEECCCCCC
Q ss_conf 86799759863089999999998417-------998448998274899865286--277899999986593887264489
Q gi|254780902|r 8 KPVVSLDGDEMTRIIWQLIQENLIHP-------YLDIKIEYFDLSIQNRDLTDD--QVTIDAAHAIKNCGVGIKCATITA 78 (412)
Q Consensus 8 ~~Iv~l~GDgiG~Ei~~~~l~vl~~~-------~~~i~~e~~d~G~~~~d~tg~--~l~~da~eaik~~~v~lkg~~~tP 78 (412)
++|.+||||||||||++++++||++. .++|+|+++++|.+++++||+ ++|+++++++++++++||||+++|
T Consensus 37 p~IavIpGDGIGPEV~~aa~kVL~a~~e~~~~~~~~ie~~~~~~G~~~~~~~G~~~~lp~et~~~~~~~da~l~G~~~~P 116 (427)
T 3dms_A 37 PIIPYIEGDGTGFDITPVMIKVVDAAVEKAYGGKKKIHWMEIYAGEKATKVYGPDVWLPEETLQVLKEYVVSIKGPLTTP 116 (427)
T ss_dssp BEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHTCEEEECCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHCCCCCCCHHHHHHHHHCCEEEECCCCCC
T ss_conf 88999766721699999999999999998548999749999947489999749988897999999997499997985589
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCC-CCCCCEEEEECCCCCCCCCCEEEECCCCEEEEE-
Q ss_conf 8544321124422110458989732966883058-8048787788-877867998505666300101477788459999-
Q gi|254780902|r 79 DQARVKEFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIP-GWKKPIIIGRHAFGDQYRATDFQFPSKGKLILK- 155 (412)
Q Consensus 79 ~~~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~-~~~~divivREnteg~Y~gie~~~~~~~~~~i~- 155 (412)
.+. +++|+|+.||+.||||+|+||+ .++++|.+.. +.++|+|||||||||+|+|+++....+....+.
T Consensus 117 ~~~---------~~~s~~l~LR~~ldlyaniRPvr~~~g~~~p~~~~~~iD~vIVREntEG~Y~g~~~~~~~~~~~~~~~ 187 (427)
T 3dms_A 117 VGG---------GIRSLNVALRQELDLYVCLRPIQYFKGVPSPVREPEKTNMVIFRENSEDIYAGIEWAAESEQAKKVIK 187 (427)
T ss_dssp C-------------CCHHHHHHHHTTCCEEEEEECCCTTCCCSSSCGGGCCEEEEEECSSGGGGCCEECTTCHHHHHHHH
T ss_pred CCC---------CCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 988---------85762188898747812210245668998755674557658972476210357421235421033655
Q ss_pred EECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 954888610255412466530101110514688999999999986599-8999974267775108999999999863100
Q gi|254780902|r 156 FVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL-PLYLSTKDTILKSYDGRFKNIFNEIFEAEFK 234 (412)
Q Consensus 156 ~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~-kvt~v~KaNVlk~tdglf~~~~~eva~~~~~ 234 (412)
+..+... ........+.++.++.+|+.+++||+|+||++|++|++ +||++||+|||+.|+|+||+++++++++||.
T Consensus 188 ~~~e~~~---~~~~~~~~~~a~~~~~~tr~~~~Riar~AF~~A~~r~~k~vt~v~KaNvl~~s~glf~~~~~~va~~~~~ 264 (427)
T 3dms_A 188 FLQEEMG---VKKIRFPQTSGIGIKPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGAFRDAGYALAQKEFG 264 (427)
T ss_dssp HHHHTSC---CCCCSCGGGCCEECCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCC---CCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 3032115---3222477524898641208989999999999999769983689967865320067899999999999876
Q ss_pred CC-------------CCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCE
Q ss_conf 24-------------542320002436999999985496651-8863210232678888775075323124312798751
Q gi|254780902|r 235 NQ-------------FDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKT 300 (412)
Q Consensus 235 ~~-------------~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~ 300 (412)
.+ ..+++|+++++++|++|||||++|++| ||||+|||||||||++|+++||||++||+|+|++ .
T Consensus 265 ~e~~~~~~~~~~~~~~~~p~i~~~~~~vDa~~~~lv~~P~~FDViv~~NlfGDILSDlaa~l~GslGl~pSanig~~--~ 342 (427)
T 3dms_A 265 AELIDGGPWMKFKNPKTGNEIVVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGANLSDS--V 342 (427)
T ss_dssp CEESTTSSCEEEECTTTCCEEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCTTTCEEEEECSS--C
T ss_pred HHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCC--C
T ss_conf 66402343001357766786799970447999998539755657740343443113466652377531244556898--7
Q ss_pred EEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC
Q ss_conf 44212222034556554248775547279999999999986302573038999999999999999879816323001578
Q gi|254780902|r 301 METEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGP 380 (412)
Q Consensus 301 ~mfEp~HGSAPd~~g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~ 380 (412)
+||||+|||||| |||||+| ||+|||||++|||+|+| +.++|++|++||.+++++|++|+||++.. +
T Consensus 343 a~FEp~HGSAPd-----iAGk~iA-NP~a~IlS~amML~~lg-------~~~~A~~i~~AV~~vl~~G~~T~Dl~~~~-~ 408 (427)
T 3dms_A 343 AMFEATHGTAPK-----YAGKDYV-NPGSEILSAEMMLRHLG-------WTEAADVIISAMEKSIKQKRVTYDFARLM-E 408 (427)
T ss_dssp EEEEECSCCCGG-----GTTSSCS-CCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHTEECHHHHTTS-S
T ss_pred EEEECCCCCCHH-----HCCCCCC-CHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCCCHHHCC-C
T ss_conf 698789887234-----4799966-90999999999999779-------98999999999999997599440211036-8
Q ss_pred CCCCEEHHHHHHHHHHHHH
Q ss_conf 8871309999999999999
Q gi|254780902|r 381 EQDWLSTTDFIEKISDNLR 399 (412)
Q Consensus 381 ~~~~~~T~ef~daI~~~l~ 399 (412)
..|.++|+||+|||+++|+
T Consensus 409 ~gg~~sTse~~daVi~~le 427 (427)
T 3dms_A 409 GATQVSCSGFGQVLIENME 427 (427)
T ss_dssp SCEECCHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHC
T ss_conf 9962179999999998429