Query         gi|254780902|ref|YP_003065315.1| isocitrate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 412
No_of_seqs    143 out of 1910
Neff          5.8 
Searched_HMMs 23785
Date          Tue May 31 22:06:22 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780902.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2qfy_A Isocitrate dehydrogenas 100.0       0       0  850.7  36.7  403    1-404    16-425 (427)
  2 1lwd_A Isocitrate dehydrogenas 100.0       0       0  848.3  36.8  403    2-405     3-413 (413)
  3 2uxq_A Isocitrate dehydrogenas 100.0       0       0  835.4  35.5  399    3-403     2-402 (402)
  4 1zor_A Isocitrate dehydrogenas 100.0       0       0  783.6  34.2  396    1-402     1-399 (399)
  5 1hqs_A Isocitrate dehydrogenas 100.0       0       0  754.6  26.2  366    8-399    20-423 (423)
  6 2d1c_A Isocitrate dehydrogenas 100.0       0       0  743.5  31.0  338    7-404    19-361 (496)
  7 1x0l_A Homoisocitrate dehydrog 100.0       0       0  728.0  34.3  329    8-400     2-332 (333)
  8 2d4v_A Isocitrate dehydrogenas 100.0       0       0  733.2  27.6  361    9-397    28-428 (429)
  9 2iv0_A Isocitrate dehydrogenas 100.0       0       0  726.2  33.4  361    9-400    29-411 (412)
 10 2e0c_A 409AA long hypothetical 100.0       0       0  730.3  28.4  361    9-400    26-408 (409)
 11 1cnz_A IPMDH, IMDH, protein (3 100.0       0       0  726.8  29.4  350    1-402     1-363 (363)
 12 1v53_A 3-isopropylmalate dehyd 100.0       0       0  724.2  29.2  351    6-406     1-363 (366)
 13 3dms_A Isocitrate dehydrogenas 100.0       0       0  727.2  25.7  364    8-399    37-427 (427)
 14 1tyo_A Isocitrate dehydrogenas 100.0       0       0  721.1  28.9  364    8-401    36-424 (435)
 15 3flk_A Tartrate dehydrogenase/ 100.0       0       0  716.0  32.3  346    7-400     5-362 (364)
 16 1vlc_A 3-isopropylmalate dehyd 100.0       0       0  715.7  30.5  345    3-401     5-365 (366)
 17 1a05_A IPMDH, IMDH, 3-isopropy 100.0       0       0  715.8  28.5  343    9-400     3-356 (358)
 18 1wpw_A 3-isopropylmalate dehyd 100.0       0       0  704.2  33.6  327    8-398     2-335 (336)
 19 1w0d_A 3-isopropylmalate dehyd 100.0       0       0  706.9  31.2  331    9-398     3-337 (337)
 20 1g2u_A IPMDH, 3-isopropylmalat 100.0       0       0  694.6  31.3  331    9-398     2-344 (345)
 21 3blx_B Isocitrate dehydrogenas 100.0       0       0  683.4  25.8  325    8-398    22-354 (354)
 22 3blx_A Isocitrate dehydrogenas 100.0       0       0  674.6  28.2  327    7-400    17-348 (349)
 23 1itw_A Isocitrate dehydrogenas  99.8 3.2E-17 1.4E-21  125.5  26.0  310   32-370   324-646 (741)
 24 2b0t_A NADP isocitrate dehydro  99.5 5.5E-11 2.3E-15   86.5  26.4  321   20-370   309-642 (738)
 25 1yxo_A 4-hydroxythreonine-4-ph  97.3 8.9E-05 3.8E-09   47.7   2.5   81  247-341   243-324 (328)
 26 3lxy_A 4-hydroxythreonine-4-ph  96.5  0.0021 8.8E-08   39.2   3.9   81  247-341   248-329 (334)
 27 2hi1_A 4-hydroxythreonine-4-ph  96.2  0.0035 1.5E-07   37.8   3.8   80  246-339   248-328 (330)
 28 2nwf_A Ubiquinol-cytochrome C   62.1     2.2 9.1E-05   20.4   1.1   35  286-327    86-120 (141)
 29 1rie_A Rieske iron-sulfur prot  54.5     3.2 0.00013   19.3   0.9   34  286-327    75-108 (129)
 30 3cx5_E Cytochrome B-C1 complex  53.6     3.8 0.00016   18.8   1.2   34  286-327   132-165 (185)
 31 1pp9_E Ubiquinol-cytochrome C   46.5     5.8 0.00024   17.7   1.2   33  286-320   142-174 (196)
 32 3fvw_A Putative NAD(P)H-depend  36.8      17 0.00072   14.7   5.0   81    6-104     1-91  (192)
 33 1t5b_A Acyl carrier protein ph  32.2      20 0.00085   14.3   3.4   82    9-104     3-110 (201)
 34 3dlo_A Universal stress protei  31.7      21 0.00087   14.2   3.9   25  185-209    36-60  (155)
 35 3evo_A NDP kinase, NDK, nucleo  27.9     7.7 0.00032   16.9  -0.6   67    2-68      2-75  (146)
 36 3cne_A Putative protease I; st  27.4      14  0.0006   15.2   0.7   36    6-41      1-36  (175)
 37 2zki_A 199AA long hypothetical  26.6      25  0.0011   13.7   2.9   67    7-74      4-78  (199)
 38 1oi4_A Hypothetical protein YH  26.3      26  0.0011   13.6   4.1   36    2-37     18-53  (193)
 39 3lpz_A GET4 (YOR164C homolog);  23.6      29  0.0012   13.3   2.6   21  268-292   301-321 (336)
 40 1vhq_A Enhancing lycopene bios  21.5      32  0.0013   13.1   3.2   37    1-39      1-43  (232)
 41 2qjy_C Ubiquinol-cytochrome C   20.7      28  0.0012   13.4   1.1   34  287-327   133-166 (187)
 42 3keg_A FMN-dependent NADH-azor  20.6      33  0.0014   12.9   3.5   37    9-45      3-44  (212)

No 1  
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=100.00  E-value=0  Score=850.73  Aligned_cols=403  Identities=61%  Similarity=1.017  Sum_probs=386.8

Q ss_pred             CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCC
Q ss_conf             97401138679975986308999999999841799844899827489986528627789999998659388726448985
Q gi|254780902|r    1 MKKIKVTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQ   80 (412)
Q Consensus         1 m~Kikm~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~   80 (412)
                      |+||||++|||+|+||||+++||+.++++|+.+++||+|++||+|+++||+||+++|+|+++++|+++|+||||++||+|
T Consensus        16 ~~KIkv~~piV~l~GDEmtriiw~~Ik~kli~p~ldi~~~~~DlG~e~rd~tgd~l~~ea~eaik~~~v~lKga~~TP~~   95 (427)
T 2qfy_A           16 FSKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITPDE   95 (427)
T ss_dssp             CCCEECSSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred             HHHEECCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHCCEEEECCCCCCCC
T ss_conf             33233368769844707999999999999735787633899706588998649977099999999769899898068872


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCC
Q ss_conf             44321124422110458989732966883058804878778887786799850566630010147778845999995488
Q gi|254780902|r   81 ARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDD  160 (412)
Q Consensus        81 ~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~~~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~  160 (412)
                      +++++.+++++|+|||++||+.||+|+|+||+.|+++|+++++|++||||+||||||+|+|+||.+..++..++++++++
T Consensus        96 ~~v~~~~~~~~~~S~N~~lR~~ldl~~~~rPi~~~~i~~~~~~~~~divI~Rented~Y~g~e~~~~~~~~~~~~~~~~~  175 (427)
T 2qfy_A           96 ARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSD  175 (427)
T ss_dssp             HHHHHTTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCEEEEEEEECSSGGGGCEEEEECSSEEEEEEEEESC
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEECCEEEECCCCCEEEEEEECC
T ss_conf             22342355412267758999765875054201544887665688888799710467758642267469972699998435


Q ss_pred             CC---CEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             86---102554124665301011105146889999999999865998999974267775108999999999863100245
Q gi|254780902|r  161 GQ---TIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQF  237 (412)
Q Consensus       161 g~---~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~  237 (412)
                      +.   .....+++..+..+.+.+++++++|+|++|+||+||++++++||++||+||||.|||+|++|++||+++||+.++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~r~a~~af~~A~~~~~~vt~v~K~nI~k~~dg~F~~~~~ev~~~~~~~~~  255 (427)
T 2qfy_A          176 PTTAQPQTLKVYDYKGSGVAMAMYNTDESIEGFAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKF  255 (427)
T ss_dssp             TTTSCCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHH
T ss_pred             CCCCCCEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCHHHHC
T ss_conf             66663136787723787411330243899999999999999848963999975405666668999999999985602203


Q ss_pred             CCCCEEHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHH
Q ss_conf             42320002436999999985496651886321023267888877507532312431279875144212222034556554
Q gi|254780902|r  238 DELGITYTHRLIDDMVASSIKWSGGYIWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQH  317 (412)
Q Consensus       238 ~~~~i~~~~~~vD~~~~~lv~~P~~fVivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~  317 (412)
                      ++++|+++|+++|+|+|||+++|++|||||+|||||||||++|+++|||||+||+|+|+++.+++|||+|||||+|+.++
T Consensus       256 ~~~~I~~~~~~iD~~~~~lv~~~~~fviv~~Nl~GDIlSD~~a~~~GslGl~pS~ni~~~~~~~e~Ea~Hgtap~h~~a~  335 (427)
T 2qfy_A          256 EQLGIHYEHRLIDDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEAAHGTVTRHYRKY  335 (427)
T ss_dssp             HHHTCCEEEEEHHHHHHHHHHSCEEEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSCCEEEECCSCCCHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHH
T ss_conf             45736874032145544104798763899614421588889887438855221011168877503415311642125333


Q ss_pred             -HCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHCCCCC--CCCEEHHHHHHH
Q ss_conf             -24877554727999999999998630257303899999999999999987-98163230015788--871309999999
Q gi|254780902|r  318 -QQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVED-GFMTKDLALLIGPE--QDWLSTTDFIEK  393 (412)
Q Consensus       318 -iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~-G~~T~DLg~~~~~~--~~~~~T~ef~da  393 (412)
                       ++||++| ||+|+|||++|||+|+|++|++++|.++|++|++||.+|+++ |++|+|||+..++.  ...+||+||+||
T Consensus       336 ~~ag~~~a-NP~a~Ils~~mmL~h~g~~d~~~~l~~~A~~ie~Av~~ti~~~g~~T~DL~g~~~~~~~~~~~~T~ef~da  414 (427)
T 2qfy_A          336 QKGEETST-NSIASIFAWSRGLLKRGELDNTPALCKFANILESATLNTVQQDGIMTKDLALACGNNERSAYVTTEEFLDA  414 (427)
T ss_dssp             HTTCCCCC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHTTCCSGGGCCCHHHHHHH
T ss_pred             HHCCCCCC-CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             41587766-86999999999999752514443699999999999999998589858011766677667874179999999


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999987
Q gi|254780902|r  394 ISDNLRDALQK  404 (412)
Q Consensus       394 I~~~l~~~l~~  404 (412)
                      |++||+++|++
T Consensus       415 I~~~L~~~l~~  425 (427)
T 2qfy_A          415 VEKRLQKEIKS  425 (427)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHC
T ss_conf             99999988750


No 2  
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=100.00  E-value=0  Score=848.31  Aligned_cols=403  Identities=62%  Similarity=1.063  Sum_probs=382.9

Q ss_pred             CCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf             74011386799759863089999999998417998448998274899865286277899999986593887264489854
Q gi|254780902|r    2 KKIKVTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQA   81 (412)
Q Consensus         2 ~Kikm~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~   81 (412)
                      +||||+||||+|+|||||||||+.++++|+.+++||+|++||+|+++|++||+++|+|+++++|+++++||||++||+|+
T Consensus         3 ~ki~v~~piv~l~GDe~~~~i~~~i~~~~~~~~~di~~~~~d~g~~~~~~tg~~lp~e~lea~k~~~a~LkGav~tP~~~   82 (413)
T 1lwd_A            3 QRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEA   82 (413)
T ss_dssp             CCEECSSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred             CCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCHH
T ss_conf             65214777699559636899999999986067877438996566789987499787999999997496898871689734


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCC
Q ss_conf             43211244221104589897329668830588048787788877867998505666300101477788459999954888
Q gi|254780902|r   82 RVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDG  161 (412)
Q Consensus        82 ~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~~~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~g  161 (412)
                      +..+..++++++|+|++||+.||||+|+||+.+.+.++...++++|+||+||||||+|+|+||.+.++++..++++.+.|
T Consensus        83 ~~~~~~~~~~~~s~n~~lR~~ldlyaniRP~~~~~~~~~~~~~~~d~vivREntEg~Y~g~e~~~~~~~~~~~~~~~~~g  162 (413)
T 1lwd_A           83 RVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDG  162 (413)
T ss_dssp             HHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTC
T ss_pred             HCCCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCEEEEEEEEEEECCCCEEEEEEECCCC
T ss_conf             22444555332250178998648743775000478887668887666870466306984003684688616899962577


Q ss_pred             CC-EEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             61-02554124665301011105146889999999999865998999974267775108999999999863100245423
Q gi|254780902|r  162 QT-IEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDEL  240 (412)
Q Consensus       162 ~~-~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~  240 (412)
                      .. .....+......++.++++++.+++||+|+||++|+.|+++||++||+|||+.|||+|+++++|++++||+.++.+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~ri~r~af~~A~~~r~kvt~v~KaNv~~~~dglf~~~~~eva~~~~~~~~~~~  242 (413)
T 1lwd_A          163 SSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKY  242 (413)
T ss_dssp             CCCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred             CCEEEEEEEECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             51121133202677413545640038899999999999855974478860563231334899999999987300134304


Q ss_pred             CEEHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHH-HHC
Q ss_conf             2000243699999998549665188632102326788887750753231243127987514421222203455655-424
Q gi|254780902|r  241 GITYTHRLIDDMVASSIKWSGGYIWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQ-HQQ  319 (412)
Q Consensus       241 ~i~~~~~~vD~~~~~lv~~P~~fVivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~-~ia  319 (412)
                      +|+++++++|+++|+++++|++|||||+|||||||||++|+++|||||+||+|+|+++..++|||+|||||||+|| +|+
T Consensus       243 ~I~~~~~~~d~~~~~lv~~~~~dVivt~NlfGDILSDlaa~l~GslGl~pSanig~~~~~~~~E~~hgsap~~~ga~dia  322 (413)
T 1lwd_A          243 KIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKG  322 (413)
T ss_dssp             TCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHHHHTT
T ss_pred             EEEEEHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCHHHCCCHHHHC
T ss_conf             89962456788878741798771999745212577767787538855455431279987225515768624204245406


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC------CCCCCCEEHHHHHHH
Q ss_conf             87755472799999999999863025730389999999999999998798163230015------788871309999999
Q gi|254780902|r  320 GKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLI------GPEQDWLSTTDFIEK  393 (412)
Q Consensus       320 Gk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~------~~~~~~~~T~ef~da  393 (412)
                      |||+| ||+|||||++|||+|+|+.|.++++.++|++|++||.+|+++|++|+|||+..      .+....+||+||+||
T Consensus       323 gk~iA-NP~A~IlS~amML~~lg~~~~~~~l~~aA~~Ie~Av~~~l~~G~~T~DlgG~~~~~~~~~~~~~~~tT~ef~da  401 (413)
T 1lwd_A          323 RPTST-NPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDT  401 (413)
T ss_dssp             CCCCC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHCTTSCCBTTTBCCHHHHHHH
T ss_pred             CCCCC-CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             87632-87999999999999734655545799999999999999996799884658876666555556676289999999


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999873
Q gi|254780902|r  394 ISDNLRDALQKN  405 (412)
Q Consensus       394 I~~~l~~~l~~~  405 (412)
                      |++||+++|+++
T Consensus       402 V~~~L~~~L~~~  413 (413)
T 1lwd_A          402 IKSNLDRALGRQ  413 (413)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHCCC
T ss_conf             999999987439


No 3  
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=100.00  E-value=0  Score=835.38  Aligned_cols=399  Identities=46%  Similarity=0.822  Sum_probs=381.5

Q ss_pred             CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCC
Q ss_conf             40113867997598630899999999984179984489982748998652862778999999865938872644898544
Q gi|254780902|r    3 KIKVTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQAR   82 (412)
Q Consensus         3 Kikm~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~   82 (412)
                      ||||++|||+|+|||||||+|++++++|+.+++||+|++||+|+++|++||+++|+|+++++|+++++||||++||+|.+
T Consensus         2 ki~~~~piv~l~GDei~~~~~~~i~~~~~~~~~die~~~~d~G~e~~~~tg~~lp~e~leaik~~daiLkGav~tP~~~~   81 (402)
T 2uxq_A            2 KIQMKTPLVELDGDEMTRVLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDR   81 (402)
T ss_dssp             CBCCSSCEEEEECCHHHHHHHHHHHHHHTTTTBCCCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHH
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCC
T ss_conf             52345776995085079999999999984568874389982678999974997779999999976999988835988554


Q ss_pred             CCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCCC
Q ss_conf             32112442211045898973296688305880487877888778679985056663001014777884599999548886
Q gi|254780902|r   83 VKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQ  162 (412)
Q Consensus        83 ~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~~~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~g~  162 (412)
                      ..+...+++++|+|++||+.||+|+|+||+.+.+.++...++.+|+||+||||||+|+|+|+.+..++..+++++...|.
T Consensus        82 ~~~~~~~~~~~s~n~~lR~~l~l~~~~rp~~~~~~~~~~~~~~~DivivREnteg~Y~g~e~~~~~~~~~~~~~~~~~~~  161 (402)
T 2uxq_A           82 VEEYGLKEQWKSPNATVRAMLDGTVFRKPIMVKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVVTDKNGK  161 (402)
T ss_dssp             HHHHTCSSCCCCHHHHHHHHHCCEEEEEECCCTTCCCSBTTCCSCCEEEEECSCGGGGCEEEEETTCEEEEEEEECTTSC
T ss_pred             CCCCCCCCCCCCHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCEECCCCCEEEEEEECCCCC
T ss_conf             44334533324730899985887614453002588887678888658863055443755520217887037999526775


Q ss_pred             CEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf             10255412466530101110514688999999999986599899997426777510899999999986310024542320
Q gi|254780902|r  163 TIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGI  242 (412)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i  242 (412)
                      ..+..........+..++++++..++|++++||++|++++++||++||+||||.|+|+|++++++++++||+.++.+++|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~kkvt~v~KaNvlk~tdglf~~~~~eva~~~~~~~~~~~~i  241 (402)
T 2uxq_A          162 ETRQTIMEVDEPAIVQGIHNTVASIGHFARACFEYSLDQKIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAAGI  241 (402)
T ss_dssp             EEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHHTC
T ss_pred             CCEEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf             31123320357547888887356799999999999974697599985330377768999999999998875214334523


Q ss_pred             EHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHH-CCC
Q ss_conf             0024369999999854966518863210232678888775075323124312798751442122220345565542-487
Q gi|254780902|r  243 TYTHRLIDDMVASSIKWSGGYIWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQ-QGK  321 (412)
Q Consensus       243 ~~~~~~vD~~~~~lv~~P~~fVivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~i-aGk  321 (412)
                      +++|+++|++||||+++|++|||||+|||||||||++|+++||||++||+|+|+++ ++||||+||||||++|+++ +||
T Consensus       242 ~~~~~~vD~~~~~lv~~P~~fViv~~Nl~GDILSD~aa~l~GglGl~pSanig~~~-~~~fEp~HGSAPdiaG~~~~~~k  320 (402)
T 2uxq_A          242 EYFYTLIDDVVARMMKTEGGMLWACKNYDGDVMSDMVASAFGSLAMMSSVLVSPYG-YFEYEAAHGTVQRHYYQHLKGER  320 (402)
T ss_dssp             CEEEEEHHHHHHHHTTCCCCSEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTS-CEEEECCSCCCHHHHHHHHTTCC
T ss_pred             EEHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCHHCCCCC-CEEEECCCCCHHHCCCHHHCCCC
T ss_conf             41056678887641368986699963642027777678752887776510137865-22431246732200213331885


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC-CCCCCEEHHHHHHHHHHHHHH
Q ss_conf             7554727999999999998630257303899999999999999987981632300157-888713099999999999999
Q gi|254780902|r  322 ETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIG-PEQDWLSTTDFIEKISDNLRD  400 (412)
Q Consensus       322 ~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~-~~~~~~~T~ef~daI~~~l~~  400 (412)
                      |+| ||+|||||++|||+|+|+.|.++++.++|++|++||.+|+++|++|+|||+... ++...+||+||+|||+++|++
T Consensus       321 ~ia-NP~a~ils~ammL~hlG~~e~~~~l~~~A~~i~~Av~~~l~~G~~T~DLGG~a~~~~~~~~tT~ef~daI~~~l~~  399 (402)
T 2uxq_A          321 TST-NPVALIYAWTGALRKRGELDGTPDLCAFCDSLEAITIECIESGYMTGDLARICEPAAIKVLDSIEFIDELGKRLQQ  399 (402)
T ss_dssp             CCC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTEECHHHHTTCSSCCSEECCHHHHHHHHHHHHHH
T ss_pred             CCC-CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             523-9499999999999974553444579999999999999999779978253766677888764899999999999998


Q ss_pred             HHH
Q ss_conf             998
Q gi|254780902|r  401 ALQ  403 (412)
Q Consensus       401 ~l~  403 (412)
                      .|+
T Consensus       400 l~~  402 (402)
T 2uxq_A          400 LNK  402 (402)
T ss_dssp             TTC
T ss_pred             HHC
T ss_conf             609


No 4  
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima MSB8}
Probab=100.00  E-value=0  Score=783.61  Aligned_cols=396  Identities=49%  Similarity=0.858  Sum_probs=358.3

Q ss_pred             CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCC
Q ss_conf             97401138679975986308999999999841799844899827489986528627789999998659388726448985
Q gi|254780902|r    1 MKKIKVTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQ   80 (412)
Q Consensus         1 m~Kikm~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~   80 (412)
                      |.||||++|||+||||||||++++.++++|..+++||+|++||+|+++|++||+++|+|++++|++++++||||++||.|
T Consensus         1 m~ki~v~~~iv~l~GDei~~~~~~~ik~~l~~~~~di~~~~~d~G~~~~~~tg~~lp~e~le~ik~~dailkGa~g~P~~   80 (399)
T 1zor_A            1 MEKVKVKNPIVELDGDEMARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEAAKAIKKYGVGVKCATITPDA   80 (399)
T ss_dssp             CCCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred             CCCEECCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCC
T ss_conf             99502379869836841799999999998716798725999737889999758998899999998779699856158863


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCC
Q ss_conf             44321124422110458989732966883058804878778887786799850566630010147778845999995488
Q gi|254780902|r   81 ARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDD  160 (412)
Q Consensus        81 ~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~~~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~  160 (412)
                      .++++...+.+++|+|++||+.||+|+|+||+.+.+.++...+++.|++|+||||||+|+|+++.+.+++..+++++...
T Consensus        81 ~~~~~~~~~~~~~s~n~~lR~~ldl~an~RP~~~~~~~~~~~~~~~d~vi~Re~te~~Y~g~~~~~~~~~~~~~~~~~~~  160 (399)
T 1zor_A           81 ERVKEYNLKKAWKSPNATIRAYLDGTVFRKPIMVKNVPPLVKRWKKPIIIGRHAYGDIYNAVEAKVEGPAEVELVVRNKE  160 (399)
T ss_dssp             HHHHHHTCSSCCCCHHHHHHHHHTCEEEEEECCBTTBCCSBTTCCSCCEEEECCSSGGGGCEEEEECSSEEEEEEEESSS
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEECCCCEEEEEEECCC
T ss_conf             34564455312237317889647942796225046887677788776488641221588400245079871899995367


Q ss_pred             CCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             86102554124665301011105146889999999999865998999974267775108999999999863100245423
Q gi|254780902|r  161 GQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDEL  240 (412)
Q Consensus       161 g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~  240 (412)
                      +..  ...+......+...+++++..+||++++||++|++++++||++||+|||+.++|+|++++++++++||.. +...
T Consensus       161 ~~~--~~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~a~~~~~~vt~v~K~Nvl~~~~g~f~~~~~eva~~~~~~-~~~~  237 (399)
T 1zor_A          161 NKT--LLVHKFEGNGVVMAMHNLEKSIRSFAQSCINYAISEKVDIWFATKDTISKVYHAYFKDIFQEEVDKRKEE-LEKA  237 (399)
T ss_dssp             CEE--EEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTCTTHHHHHHHHHHHHHHHTHHH-HHHT
T ss_pred             CCC--CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHC-CCCC
T ss_conf             741--0134567865677502334689999999999886158457873156520346789999999988653110-1344


Q ss_pred             CEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHH-
Q ss_conf             20002436999999985496651-8863210232678888775075323124312798751442122220345565542-
Q gi|254780902|r  241 GITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQ-  318 (412)
Q Consensus       241 ~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~i-  318 (412)
                      .+++ ++++|+++|+++++|++| ||||+|||||||||++|+++|||||+||+|+|+++ .+||||+|||||||+||++ 
T Consensus       238 ~~~~-~~~~~~~~~~~~~~p~~~dVivt~NlfGDIlSDlaa~l~GglGl~psanig~~~-~~~fEp~HGSaPdiag~~~~  315 (399)
T 1zor_A          238 GVNY-RYMLIDDAAAQILRSEGGMLWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDG-VYEFEAAHGTVRRHYYRYLK  315 (399)
T ss_dssp             TCCE-EEEEHHHHHHHHHHSCCCSEEEECHHHHHHHHHHHHHHHCCGGGEEEEEECTTC-CEEEEESSCCCHHHHHHHTT
T ss_pred             CCHH-HHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCEECCCCCCCCHHHHHH
T ss_conf             2011-331558999723389987599940434531313566533876424421137877-64331114446510577875


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC-CCCCEEHHHHHHHHHHH
Q ss_conf             48775547279999999999986302573038999999999999999879816323001578-88713099999999999
Q gi|254780902|r  319 QGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGP-EQDWLSTTDFIEKISDN  397 (412)
Q Consensus       319 aGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~-~~~~~~T~ef~daI~~~  397 (412)
                      +|||+| ||+|||||++|||+|+|+++++++|.++|++|++||.+|+++|++|+||++.+.+ ..|.+||+||+|||+++
T Consensus       316 ~gk~~A-NP~a~ILS~ammL~~lg~~~~~~~~~~aA~~Ie~Av~~~l~~G~~T~Dl~g~~~~~~gg~~~T~e~~daV~~~  394 (399)
T 1zor_A          316 GEKTST-NPTASIFAWTGAIRKRGELDGTPEVCEFADKLEKAVINTIESGVITKDLQPFTEPPIDKYVTLEEFIDEVKKN  394 (399)
T ss_dssp             TCCCCC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCGGGGGGCSSCCCCCCCHHHHHHHHHHH
T ss_pred             CCCCCC-CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             577731-8499999999999986122565579999999999999999779967453545677778847799999999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254780902|r  398 LRDAL  402 (412)
Q Consensus       398 l~~~l  402 (412)
                      |++.|
T Consensus       395 L~~~l  399 (399)
T 1zor_A          395 LEKLL  399 (399)
T ss_dssp             HHTTC
T ss_pred             HHHHC
T ss_conf             98429


No 5  
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=100.00  E-value=0  Score=754.56  Aligned_cols=366  Identities=20%  Similarity=0.230  Sum_probs=317.0

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCC-------CCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCC
Q ss_conf             86799759863089999999998417-------99844899827489986528627789999998659388726448985
Q gi|254780902|r    8 KPVVSLDGDEMTRIIWQLIQENLIHP-------YLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQ   80 (412)
Q Consensus         8 ~~Iv~l~GDgiG~Ei~~~~l~vl~~~-------~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~   80 (412)
                      ++|.+|||||||||||+++++||++.       .++|+|+++++|+++|++||+++|++++++|++++++||||+++|.+
T Consensus        20 p~IavipGDGIGpEV~~~a~kVl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~et~~~~~~~da~l~g~~~~p~~   99 (423)
T 1hqs_A           20 PIIPFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDVIREYFIAIKGPLTTPVG   99 (423)
T ss_dssp             BEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEECCCCCCSS
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHCEEEECCCCCCCC
T ss_conf             88999798863299999999999999988426898659999756499999779968899999999749198488778987


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCCC-CCCCEEEEECCCCCCCCCCEEEECCCCEEEEE-EE
Q ss_conf             44321124422110458989732966883058-80487877888-77867998505666300101477788459999-95
Q gi|254780902|r   81 ARVKEFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIPG-WKKPIIIGRHAFGDQYRATDFQFPSKGKLILK-FV  157 (412)
Q Consensus        81 ~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~~-~~~divivREnteg~Y~gie~~~~~~~~~~i~-~~  157 (412)
                      .         +.+|+|+.||+.||||+|+||+ .++++|.+.+. .++|+|||||||||+|+|+|+....+....+. +.
T Consensus       100 ~---------~~~s~~l~LR~~ldlyanvRP~~~~~g~~spl~~~~~iD~vivREnteG~Y~g~e~~~~~~~~~~~~~~~  170 (423)
T 1hqs_A          100 G---------GIRSLNVALRQELDLFVCLRPVRYFTGVPSPVKRPEDTDMVIFRENTEDIYAGIEYAKGSEEVQKLISFL  170 (423)
T ss_dssp             S---------SSCCHHHHHHHHTTCCEEEEEEECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEECTTCHHHHHHHHHH
T ss_pred             C---------CCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHC
T ss_conf             8---------8676448889864874544440444799986678667767998127776446753146886422210102


Q ss_pred             CCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             4888610255412466530101110514688999999999986599-899997426777510899999999986310024
Q gi|254780902|r  158 GDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL-PLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQ  236 (412)
Q Consensus       158 ~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~-kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~  236 (412)
                      ..   .............++.++.+|+++++||+|+||+||++|+| +||+|||+||||.|||+|++|+++|+++|+.+.
T Consensus       171 ~~---~~~~~~~~~~~~~a~~~~~~Tr~~~~RI~r~AFe~A~~r~rk~vt~v~KaNvl~~tdglf~~~~~eva~~e~~~~  247 (423)
T 1hqs_A          171 QN---ELNVNKIRFPETSGIGIKPVSEEGTSRLVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDK  247 (423)
T ss_dssp             HH---HSCCCCCSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHHTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHHGGG
T ss_pred             CC---CCCCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCHHHHHHHHHHHHHCCCC
T ss_conf             34---345443236764167777752778889999999999965998289996776461234416789999998762762


Q ss_pred             C--------------------------CCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             5--------------------------42320002436999999985496651-88632102326788887750753231
Q gi|254780902|r  237 F--------------------------DELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLM  289 (412)
Q Consensus       237 ~--------------------------~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGla  289 (412)
                      .                          .|++|+++|+++|+++||||++|++| ||||+|||||||||++|+++|||||+
T Consensus       248 ~~~~~~~d~i~~e~~~~~~~~~~~~~~~yp~I~~~~~~vD~~~~~lv~~P~~FDVivt~NlfGDILSDlaa~l~GslGl~  327 (423)
T 1hqs_A          248 VFTWAQYDRIAEEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQVGGIGIA  327 (423)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCTTTC
T ss_pred             EECCCCHHHHHHHHCCHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf             11123101234442200100221134557727985468999999986494227775013211057878999870898887


Q ss_pred             EEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             24312798751442122220345565542487755472799999999999863025730389999999999999998798
Q gi|254780902|r  290 TSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGF  369 (412)
Q Consensus       290 pSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~  369 (412)
                      ||+|||++..++||||+||||||     |||||+| ||+|||||++|||+|+|       +.++|++|++||.+++++|+
T Consensus       328 pSanig~~~~~a~fEp~HGSAPd-----iAGk~iA-NP~a~IlS~amML~~lg-------~~~~A~~i~~Av~~vl~~g~  394 (423)
T 1hqs_A          328 PGANINYETGHAIFEATHGTAPK-----YAGLDKV-NPSSVILSGVLLLEHLG-------WNEAADLVIKSMEKTIASKV  394 (423)
T ss_dssp             EEEEECTTTCCEEEEESCCCCGG-----GTTTTCS-CCHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHTTE
T ss_pred             CCCCCCCCCCCEEEECCCCCHHH-----HCCCCCC-CHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCC
T ss_conf             53016999984798679886266-----5699865-97999999999999879-------98999999999999997499


Q ss_pred             CCHHHHHCCCCCCCCEEHHHHHHHHHHHHH
Q ss_conf             163230015788871309999999999999
Q gi|254780902|r  370 MTKDLALLIGPEQDWLSTTDFIEKISDNLR  399 (412)
Q Consensus       370 ~T~DLg~~~~~~~~~~~T~ef~daI~~~l~  399 (412)
                      +|+||++. .+..+.++|+||+|+|+++|+
T Consensus       395 ~T~Dl~~~-~d~gg~~~T~e~~daVi~~l~  423 (423)
T 1hqs_A          395 VTYDFARL-MDGATEVKCSEFGEELIKNMD  423 (423)
T ss_dssp             ECHHHHTT-SSSCEECCHHHHHHHHHHTCC
T ss_pred             CCCCCCCC-CCCCCCCCHHHHHHHHHHHHC
T ss_conf             66551215-689964059999999998339


No 6  
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus HB8}
Probab=100.00  E-value=0  Score=743.54  Aligned_cols=338  Identities=21%  Similarity=0.226  Sum_probs=305.9

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHH-HCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCC
Q ss_conf             386799759863089999999998417998448998274899865-2862778999999865938872644898544321
Q gi|254780902|r    7 TKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDL-TDDQVTIDAAHAIKNCGVGIKCATITADQARVKE   85 (412)
Q Consensus         7 ~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~-tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~~   85 (412)
                      +++|++|||||||||||++++++|.+...+++|+++++|.+.|.+ +|+++|++++++|++++++||||++||.+     
T Consensus        19 r~~IaVipGDGIGPEV~~aalkVL~a~~~~i~~e~~~~G~~~y~~~~g~~lp~etl~~i~~~daiLkGpi~tP~~-----   93 (496)
T 2d1c_A           19 RKLITVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIESIRKTRVVLKGPLETPVG-----   93 (496)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCSHHHHTTTCTTSCCHHHHHHHHHHCEEEECCCCCCSS-----
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCCCCCHHHHHHHHHCCEEEECCCCCCCC-----
T ss_conf             869999897750399999999999970998039999737998863368979899999998789899794568987-----


Q ss_pred             CCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCCCCE
Q ss_conf             124422110458989732966883058-8048787788877867998505666300101477788459999954888610
Q gi|254780902|r   86 FNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTI  164 (412)
Q Consensus        86 ~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~g~~~  164 (412)
                          .+++|+|++||+.||||+|+||+ .++++|.+.+.+++|+|||||||||+|+|+++....+....+          
T Consensus        94 ----~~~~s~nl~LRk~LdLyaNvRPvk~~~g~~~~~~~~~iDivIVREntEGlY~g~e~~~~~~~a~~~----------  159 (496)
T 2d1c_A           94 ----YGEKSANVTLRKLFETYANVRPVREFPNVPTPYAGRGIDLVVVRENVEDLYAGIEHMQTPSVAQTL----------  159 (496)
T ss_dssp             ----SSSCCHHHHHHHHTTCCEEEEEEECBTTBCCTTTTSCCEEEEEEECSSBGGGCCEEEEETTEEEEE----------
T ss_pred             ----CCCCCHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEHHCCCCCCCCCCCCCCHHHEEE----------
T ss_conf             ----687660478998569708853686568988744367888799833037854674223453230130----------


Q ss_pred             EEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCC-CCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf             25541246653010111051468899999999998659-98999974267775108999999999863100245423200
Q gi|254780902|r  165 EKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQ-LPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGIT  243 (412)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~-~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i~  243 (412)
                                     ..+|+.+++||+|+||+||++|+ ++||++||+||||.|+|+|++++++++++       ||+|+
T Consensus       160 ---------------k~itr~~seRI~r~AFe~A~~~~rkkVt~v~KaNvmk~t~glf~~~~~eva~e-------yPdI~  217 (496)
T 2d1c_A          160 ---------------KLISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQE-------YPDIE  217 (496)
T ss_dssp             ---------------EEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTCTTHHHHHHHHHHHHHTT-------CTTSE
T ss_pred             ---------------CEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH-------CCCEE
T ss_conf             ---------------11520114567789999998649983377513440112258999999999856-------79659


Q ss_pred             HHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             02436999999985496651-88632102326788887750753231243127987514421222203455655424877
Q gi|254780902|r  244 YTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKE  322 (412)
Q Consensus       244 ~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~  322 (412)
                      ++|++||+++|||+++|++| ||||+|||||||||++|+++||+||+||+|+|++  ++||||+||||||     |||||
T Consensus       218 ~e~~~VD~~a~~Lv~~P~~FDVIVt~NlfGDILSDlaa~l~GslGlapSaniG~~--~amFEpvHGSAPd-----iAGk~  290 (496)
T 2d1c_A          218 AVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIGNE--VAIFEAVHGSAPK-----YAGKN  290 (496)
T ss_dssp             EEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTTCGGGCEEEEECSS--CEEEEESSCCCTT-----TTTSS
T ss_pred             EEECHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CEEEECCCCCCHH-----HCCCC
T ss_conf             9855055899997319533776621421467888888875387434553201798--5577778887234-----37998


Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHCCCCCCCCEEHHHHHHHHHHHHHHH
Q ss_conf             5547279999999999986302573038999999999999999879-816323001578887130999999999999999
Q gi|254780902|r  323 TSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDG-FMTKDLALLIGPEQDWLSTTDFIEKISDNLRDA  401 (412)
Q Consensus       323 iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G-~~T~DLg~~~~~~~~~~~T~ef~daI~~~l~~~  401 (412)
                      +| ||+|||||++|||+|+|+       .++|++|++|+.+|+++| ++|+|||+.    ...++|+||+|||+++|++.
T Consensus       291 iA-NP~a~IlSaamML~hlg~-------~~~A~~Ie~Av~~tl~~Gki~T~DlgG~----~~~a~T~ef~daIi~~l~k~  358 (496)
T 2d1c_A          291 VI-NPTAVLLSAVMMLRYLEE-------FATADLIENALLYTLEEGRVLTGDVVGY----DRGAKTTEYTEAIIQNLGKT  358 (496)
T ss_dssp             CC-CCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHTSSCBHHHHCT----TTCBCHHHHHHHHHHTTTCC
T ss_pred             CC-CCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHCCCCCCHHHCCC----CCCCCHHHHHHHHHHHHCCC
T ss_conf             75-919999999999998699-------7899999999999998598513220399----98773999999999986088


Q ss_pred             HHH
Q ss_conf             987
Q gi|254780902|r  402 LQK  404 (412)
Q Consensus       402 l~~  404 (412)
                      .++
T Consensus       359 p~~  361 (496)
T 2d1c_A          359 PRK  361 (496)
T ss_dssp             CSS
T ss_pred             CCC
T ss_conf             333


No 7  
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosynthesis; 1.85A {Thermus thermophilus}
Probab=100.00  E-value=0  Score=728.02  Aligned_cols=329  Identities=19%  Similarity=0.178  Sum_probs=301.5

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCC
Q ss_conf             86799759863089999999998417998448998274899865286277899999986593887264489854432112
Q gi|254780902|r    8 KPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKEFN   87 (412)
Q Consensus         8 ~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~~~~   87 (412)
                      .+|++|||||||||||+++++||++..++++|+++++|+++|+++|+++|+++++++++++++||||+++|.++.     
T Consensus         2 y~I~vipGDGIGpEV~~~~~~Vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~~~~~da~l~Ga~g~p~~~~-----   76 (333)
T 1x0l_A            2 YRICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATLFGAATSPTRKV-----   76 (333)
T ss_dssp             EEEEEEEESTTHHHHHHHHHHHHHTTTCCEEEEEECCSHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCCSSCC-----
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCCEEECCCCCCCCCC-----
T ss_conf             389998977668999999999999739697999981379999987994889999999835842775678988778-----


Q ss_pred             CCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCCCCEEEE
Q ss_conf             44221104589897329668830588048787788877867998505666300101477788459999954888610255
Q gi|254780902|r   88 LKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKE  167 (412)
Q Consensus        88 l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~~~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~g~~~~~~  167 (412)
                        .+++|+|+.||++||||+|+||.  +++|.+....++|++||||||||+|+|.++... +                  
T Consensus        77 --~~~~~~~~~LR~~ldLyanvRP~--k~~p~~~~~~~iDivivREnteG~Y~g~e~~~~-d------------------  133 (333)
T 1x0l_A           77 --PGFFGAIRYLRRRLDLYANVRPA--KSRPVPGSRPGVDLVIVRENTEGLYVEQERRYL-D------------------  133 (333)
T ss_dssp             --TTCCCHHHHHHHHTTCCEEEEEE--ECCSSTTCCSSCEEEEEEECGGGTCCCCEEEET-T------------------
T ss_pred             --CCCHHHHHHHHHHCCCCEEEEEE--ECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC-C------------------
T ss_conf             --77102799999974987379988--545786778998689981344664445433456-6------------------


Q ss_pred             EECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHH
Q ss_conf             412466530101110514688999999999986599-8999974267775108999999999863100245423200024
Q gi|254780902|r  168 VFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL-PLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYTH  246 (412)
Q Consensus       168 ~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~-kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i~~~~  246 (412)
                             .....+.+|+.+++||+|+||++|++|+| +||++||+|||+.++|+|+++++|++++       ||+|+++|
T Consensus       134 -------~~~~~~~~Tr~~~eRI~r~Afe~A~~r~rk~vt~v~K~nv~~~~~g~f~~~~~e~ak~-------yp~I~~~~  199 (333)
T 1x0l_A          134 -------VAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVAKD-------FPLVNVQD  199 (333)
T ss_dssp             -------EEEEEEEEEHHHHHHHHHHHHHHHHTSTTCEEEEEECTTTCTTHHHHHHHHHHHHHTT-------CTTSEEEE
T ss_pred             -------CEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHCC-------CCCEEEEE
T ss_conf             -------4145676205776799999999999769988752565644512224899999999810-------88538974


Q ss_pred             HHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf             36999999985496651-88632102326788887750753231243127987514421222203455655424877554
Q gi|254780902|r  247 RLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETST  325 (412)
Q Consensus       247 ~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~  325 (412)
                      ++||++|||||++|++| ||||+|||||||||++|+++||||++||+|+|++  .+||||+||||||     |||||+| 
T Consensus       200 ~~vD~~~~~lv~~P~~fdViv~~Nl~GDIlSD~~a~l~GslG~~ps~nig~~--~~~fEp~HGsapd-----iaGk~ia-  271 (333)
T 1x0l_A          200 IIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVGGLGLAPSGNIGDT--TAVFEPVHGSAPD-----IAGKGIA-  271 (333)
T ss_dssp             EEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECSS--CEEEEESSCCCGG-----GTTSSCC-
T ss_pred             EHHHHHHHHHHCCCHHCCEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC--HHHHHCCCCCCHH-----HCCCCCC-
T ss_conf             2267999998569031583015741077889998752488776775300853--1233204688522-----2489866-


Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEHHHHHHHHHHHHHH
Q ss_conf             727999999999998630257303899999999999999987981632300157888713099999999999999
Q gi|254780902|r  326 NSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKISDNLRD  400 (412)
Q Consensus       326 NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~T~ef~daI~~~l~~  400 (412)
                      ||+|||||++|||+|+|       ++++|++|++||.+++++|++|+|||       |.+||+||+|+|+++|++
T Consensus       272 NP~a~ils~ammL~~lg-------~~~~a~~i~~Av~~~l~~g~~T~Dlg-------g~~~T~e~~dai~~~l~~  332 (333)
T 1x0l_A          272 NPTAAILSAAMMLDYLG-------EKEAAKRVEKAVDLVLERGPRTPDLG-------GDATTEAFTEAVVEALKS  332 (333)
T ss_dssp             CCHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHSCCCGGGT-------CCCCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCCCCC-------CCCCHHHHHHHHHHHHHH
T ss_conf             95999999999999869-------97899999999999996699561039-------997499999999999963


No 8  
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=100.00  E-value=0  Score=733.24  Aligned_cols=361  Identities=20%  Similarity=0.210  Sum_probs=308.7

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHCC-------CCCCEEEEEECCHHHHHHH--CCCCCHHHHHHHHHCCEEEECCCCCCC
Q ss_conf             6799759863089999999998417-------9984489982748998652--862778999999865938872644898
Q gi|254780902|r    9 PVVSLDGDEMTRIIWQLIQENLIHP-------YLDIKIEYFDLSIQNRDLT--DDQVTIDAAHAIKNCGVGIKCATITAD   79 (412)
Q Consensus         9 ~Iv~l~GDgiG~Ei~~~~l~vl~~~-------~~~i~~e~~d~G~~~~d~t--g~~l~~da~eaik~~~v~lkg~~~tP~   79 (412)
                      .|.+||||||||||++++++||++.       .++|+|.++++|.++++++  |+++|+++++++++++++||||+++|.
T Consensus        28 ~IavipGDGIGpEV~~~~~~Vl~~~~~~~~~~~~~i~~~~~~~G~~a~~~~g~g~~lP~et~~~~~~~dail~G~i~~p~  107 (429)
T 2d4v_A           28 IIPFIEGDGIGCDVTPAMRSVVDAAVAKVYGGQRQIAWMELFAGQKAVQLYGEGQYLPDETMAAIREYKVAIKGPLETPV  107 (429)
T ss_dssp             EEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHHCEEEECCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHCCEEEECCCCCCC
T ss_conf             89997878320999999999999986675178764289997256877645188986989999999878999979877888


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCCC-CCCCEEEEECCCCCCCCCCEEEECCCCEEEEE-E
Q ss_conf             544321124422110458989732966883058-80487877888-77867998505666300101477788459999-9
Q gi|254780902|r   80 QARVKEFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIPG-WKKPIIIGRHAFGDQYRATDFQFPSKGKLILK-F  156 (412)
Q Consensus        80 ~~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~~-~~~divivREnteg~Y~gie~~~~~~~~~~i~-~  156 (412)
                      +.         +.+|+|+.||+.||||+|+||+ .++++|.+... .++|+|||||||||+|+|.++....+....+. +
T Consensus       108 ~~---------~~~~~~l~LR~~ldLyanlRP~~~~~g~~~~~~~~~~iD~vIVREnteG~Y~g~~~~~~~~~~~~~~~~  178 (429)
T 2d4v_A          108 GG---------GIRSLNVAMRQDLDLYVCLRPVRYFEGTPSPMRHPEKVDMVIFRENSEDIYAGIEWPAGSPEAEKIIRF  178 (429)
T ss_dssp             SS---------SSCCHHHHHHHHTTCCEEEEEEECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEECTTCHHHHHHHHH
T ss_pred             CC---------CCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             88---------753566899986797465423336678887334756677799974676543551124677320012000


Q ss_pred             ECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             54888610255412466530101110514688999999999986599-89999742677751089999999998631002
Q gi|254780902|r  157 VGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL-PLYLSTKDTILKSYDGRFKNIFNEIFEAEFKN  235 (412)
Q Consensus       157 ~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~-kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~  235 (412)
                      ..+   ...........+.++.++.+|+.+++|++|+||+||++|++ +||++||+|||+.++|+|++++++|+++||..
T Consensus       179 ~~~---~~~~~~~~~~~~~a~~~~v~t~~~~~Ri~r~Af~~A~~r~~k~vt~v~KaNvl~~s~glf~~~~~~va~~~~~~  255 (429)
T 2d4v_A          179 LRE---EMGVTKIRFPDSSAIGIKPVSTEGSERLIRRTIQYALEHGKPSVSLVHKGNIMKFTEGGFRDWGYALAEREFAG  255 (429)
T ss_dssp             HHH---TSCCCCCSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHSTT
T ss_pred             HHH---HCCCCEEECCCCEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             001---02520340798479999986117789999999999986599806888457623002006999999998876056


Q ss_pred             C--------------------------CCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf             4--------------------------542320002436999999985496651-8863210232678888775075323
Q gi|254780902|r  236 Q--------------------------FDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGL  288 (412)
Q Consensus       236 ~--------------------------~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGl  288 (412)
                      +                          ..|++++++|+++||+|||||++|++| ||||+|||||||||++|+++|||||
T Consensus       256 ~~~~wr~~~~~~~~~~~~~~~~~e~~~~~~~~i~~~~~~vD~~a~~lv~~P~~FDVIv~~NlfGDILSDlaa~l~GslGl  335 (429)
T 2d4v_A          256 RVFTWRQKAAISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLNGDYVSDALAAEVGGIGM  335 (429)
T ss_dssp             TEEEHHHHHHHHHHHCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCGGG
T ss_pred             CCCCCCEEEEECCCCCCCCCCCCEECCCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCCCC
T ss_conf             55331122110000243344320002446764587379999999998439301757741321447899999998604565


Q ss_pred             CEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             12431279875144212222034556554248775547279999999999986302573038999999999999999879
Q gi|254780902|r  289 MTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDG  368 (412)
Q Consensus       289 apSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G  368 (412)
                      +||+|||++  .+||||+||||||     |||||+| ||+|||||++|||+|+|       +.++|++|++||.+++++|
T Consensus       336 ~pSanig~~--~a~FEp~HGSAPd-----iaGk~iA-NP~A~IlS~amML~~lg-------~~~~A~~Ie~AV~~vl~~G  400 (429)
T 2d4v_A          336 APGANLSDT--HAIFEATHGTAPD-----IAGQGKA-NPSSLILSAVMMLEHLG-------WGEAAQAIVAAMNATIAAG  400 (429)
T ss_dssp             CCCEEECSS--CEEEECSCCCCTT-----TTTTTCC-CCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCC--CEEEECCCCCCCC-----CCCCCCC-CCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCC
T ss_conf             641102898--7577779887523-----3799964-92999999999999879-------9889999999999999769


Q ss_pred             CCCHHHHHCCCCCCCCEEHHHHHHHHHHH
Q ss_conf             81632300157888713099999999999
Q gi|254780902|r  369 FMTKDLALLIGPEQDWLSTTDFIEKISDN  397 (412)
Q Consensus       369 ~~T~DLg~~~~~~~~~~~T~ef~daI~~~  397 (412)
                      ++|+|||+.. ++...+||+||+|||+++
T Consensus       401 ~~T~DLgg~~-~~~~~~sT~e~~~aIi~r  428 (429)
T 2d4v_A          401 EVTGDLAALR-GDVPALSTTEFTAALIRR  428 (429)
T ss_dssp             CEEHHHHTTC-TTCCEECHHHHHHHHHTT
T ss_pred             CCCCCCCCCC-CCCCCCCHHHHHHHHHHH
T ss_conf             9664557788-898876899999999951


No 9  
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=100.00  E-value=0  Score=726.19  Aligned_cols=361  Identities=21%  Similarity=0.210  Sum_probs=309.1

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHCC----CCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCC
Q ss_conf             6799759863089999999998417----998448998274899865286277899999986593887264489854432
Q gi|254780902|r    9 PVVSLDGDEMTRIIWQLIQENLIHP----YLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVK   84 (412)
Q Consensus         9 ~Iv~l~GDgiG~Ei~~~~l~vl~~~----~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~   84 (412)
                      .|.||||||||||||.++++||++.    .++++|.++++|+++|+++|+++|+++++++++++++||||+++|.+.   
T Consensus        29 ~IavipGDGIGpEV~~~~~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~~p~~t~~~~~~~da~l~G~i~~P~~~---  105 (412)
T 2iv0_A           29 IIPYFEGDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNYLPDDTLNAIKEFRVALKGPLTTPVGG---  105 (412)
T ss_dssp             EEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCEEEECCCCCCSSS---
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHCEEEECCCCCCCCC---
T ss_conf             89993898314999999999999985051896599996373999998699188999999998296960887698988---


Q ss_pred             CCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCCC-CCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCCC
Q ss_conf             1124422110458989732966883058-80487877888-778679985056663001014777884599999548886
Q gi|254780902|r   85 EFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIPG-WKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQ  162 (412)
Q Consensus        85 ~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~~-~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~g~  162 (412)
                            +++|+|+.||+.||+|+|+||+ .+++++.+... .++|++||||||||+|+|+||....+....+....    
T Consensus       106 ------~~~~~~l~LR~~ldlyanvRP~~~~~g~~spl~~~~~iD~vivREnteG~Y~g~e~~~~~~~~~~~~~~~----  175 (412)
T 2iv0_A          106 ------GYRSLNVTIRQVLDLYANVRPVYYLKGVPSPIKHPEKVNFVIFRENTEDVYAGIEWPRGSEEALKLIRFL----  175 (412)
T ss_dssp             ------SSSHHHHHHHHHTTCCEEEEEEECCTTSCCSBSCGGGCEEEEEEECSSSGGGCCEECTTCHHHHHHHHHH----
T ss_pred             ------CCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCEEEEC----
T ss_conf             ------8576438899864883860013456888786667344766998115677656644346761010125621----


Q ss_pred             CEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHHCC-------
Q ss_conf             10255412466530101110514688999999999986599-8999974267775108999999999863100-------
Q gi|254780902|r  163 TIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL-PLYLSTKDTILKSYDGRFKNIFNEIFEAEFK-------  234 (412)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~-kvt~v~KaNVlk~tdglf~~~~~eva~~~~~-------  234 (412)
                       ...............++.+|+.+++||+|+||+||++|++ +||++||+|||+.|||+|++|++|+++++|+       
T Consensus       176 -~~~~~~~i~~~~a~~~~~~t~~~~~Ri~r~Af~~A~~~~rk~vt~v~KaNvl~~sdglf~~~~~eva~~ef~~~~~~~~  254 (412)
T 2iv0_A          176 -KNEFGVTIREDSGIGIKPISEFATKRLVRMAIRYAIENNRKSVTLVHKGNIMKYTEGAFRDWGYEVAKQEFGEYCITED  254 (412)
T ss_dssp             -HHHHCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTCTTTHHHHHHHHHHHHHHHSTTTEECHH
T ss_pred             -CCCCCEECCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             -4546500256505777873489999999999999997499817998774210321307999999999986354564420


Q ss_pred             -------CCCCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCC
Q ss_conf             -------24542320002436999999985496651-8863210232678888775075323124312798751442122
Q gi|254780902|r  235 -------NQFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAA  306 (412)
Q Consensus       235 -------~~~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~  306 (412)
                             .++++++|+++|+|||+|+||||++|++| ||||+|||||||||++|+++||||++||+|+|++  .+||||+
T Consensus       255 e~~~~~~~~~~~~~I~~~~~~vD~~~~~lv~~P~~fDVIvt~NlfGDILSDlaa~l~GglGl~pSanig~~--~a~FEp~  332 (412)
T 2iv0_A          255 ELWDKYGGKQPEGKIVVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGSNIGDG--IGVFEPV  332 (412)
T ss_dssp             HHHHHHTTCCCTTCEEEEEEEGGGHHHHHHHSGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCEEEEEETT--EEEEEES
T ss_pred             HHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC--CEEEECC
T ss_conf             23223124588870699544578999875018776876620540346888888885388777774446897--4321046


Q ss_pred             CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEE
Q ss_conf             22034556554248775547279999999999986302573038999999999999999879816323001578887130
Q gi|254780902|r  307 HGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLS  386 (412)
Q Consensus       307 HGSAPd~~g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~  386 (412)
                      ||||||     |||||+| ||+|||||++|||+|+|+       .++|++|++||.+|+++|++|+||.+..  +.+.++
T Consensus       333 HGSAPd-----iaGk~iA-NP~a~IlS~amML~~lg~-------~~~A~~i~~AV~~vl~~G~~T~Dl~~~~--~Gg~~~  397 (412)
T 2iv0_A          333 HGSAPK-----YAGQNKV-NPTAEILTGALMFEYIGW-------KDASEMIKKAVEMTISSGIVTYDIHRHM--GGTKVG  397 (412)
T ss_dssp             SCCCST-----TTTSSCS-CCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHTTEECHHHHHHH--CSEECC
T ss_pred             CCCHHH-----HCCCCCC-CCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCC
T ss_conf             685155-----4689876-959999999999998699-------7899999999999997599565556467--997048


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999999
Q gi|254780902|r  387 TTDFIEKISDNLRD  400 (412)
Q Consensus       387 T~ef~daI~~~l~~  400 (412)
                      |+||+|||+++|++
T Consensus       398 T~e~~daV~~~L~~  411 (412)
T 2iv0_A          398 TREFAEAVVENLQS  411 (412)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC
T ss_conf             99999999999962


No 10 
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=100.00  E-value=0  Score=730.26  Aligned_cols=361  Identities=21%  Similarity=0.235  Sum_probs=311.1

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHC-------CCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf             679975986308999999999841-------7998448998274899865286277899999986593887264489854
Q gi|254780902|r    9 PVVSLDGDEMTRIIWQLIQENLIH-------PYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQA   81 (412)
Q Consensus         9 ~Iv~l~GDgiG~Ei~~~~l~vl~~-------~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~   81 (412)
                      +|++||||||||||++++++||.+       ..++|+|.++++|.++++++|+++|+++++++++++++||||+++|.+ 
T Consensus        26 ~I~vipGDGIGpEV~~~~~kVL~~~~~~~~g~~~~i~~~~~~~G~~~~~~~g~~lp~et~~~~~~~dail~Ga~~~P~~-  104 (409)
T 2e0c_A           26 VILYIEGDGIGPEITNAAIKVINKAVERAYGSSREIKWLEVYAGEKAEKLVNDRFPKETQEMLLKYRVVLKGPLETPIG-  104 (409)
T ss_dssp             EEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEECCCC-----
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCC-
T ss_conf             8999798852699999999999999987438887418999805177887629978399999999779799786568887-


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCCC-CCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECC
Q ss_conf             4321124422110458989732966883058-80487877888-778679985056663001014777884599999548
Q gi|254780902|r   82 RVKEFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIPG-WKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGD  159 (412)
Q Consensus        82 ~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~~-~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~  159 (412)
                              .+++|+|+.||+.||||+|+||. .+++++.+... .++|++||||||||+|+|+++....+....+.... 
T Consensus       105 --------~~~~~~~~~lR~~ldlyanvRP~r~~~gl~s~~~~~~~iDivIvREnteg~Y~g~e~~~~~~~~~~~~~~~-  175 (409)
T 2e0c_A          105 --------KGWKSVNVAIRLMLDLYANIRPVKYIEGLESPLKHPEKVDMIIFRENTDDLYRGIEYPFNSEEAKKIRDFL-  175 (409)
T ss_dssp             ------------CHHHHHHHHTTCCEEEEEEECCTTCCCSBSCCTTCEEEEEEECSSGGGGCCEECTTSHHHHHHHHHH-
T ss_pred             --------CCCCCCCHHHHHHCCCCEECCCEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-
T ss_conf             --------88765135678864984541303314688787678666767997177765334641034654443100113-


Q ss_pred             CCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCC-CCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCC---
Q ss_conf             8861025541246653010111051468899999999998659-989999742677751089999999998631002---
Q gi|254780902|r  160 DGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQ-LPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKN---  235 (412)
Q Consensus       160 ~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~-~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~---  235 (412)
                          ......+.....+..++++|+.+++||+|+||+||++|+ ++||++||+|||+.|+|+|++|++|++.++|++   
T Consensus       176 ----~~~~~~e~~~~~~~~~~~~t~~~~~Ri~r~Af~~A~~~~rk~Vt~v~KaNvl~~t~glf~~~~~eva~~~~~d~~~  251 (409)
T 2e0c_A          176 ----RKELKVEIEDDTGIGIKVMSKYKTQRITRLAIQYAIEHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEYRDFIV  251 (409)
T ss_dssp             ----HHHSCCCCCSSEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTTHHHHHHHHHHHHHHHSTTTEE
T ss_pred             ----CCCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             ----5666530378615999987546589999999999997189968999688513234659999999998874585256


Q ss_pred             --------CCCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCC
Q ss_conf             --------4542320002436999999985496651-8863210232678888775075323124312798751442122
Q gi|254780902|r  236 --------QFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAA  306 (412)
Q Consensus       236 --------~~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~  306 (412)
                              +++|++|+++|+|||+++||||++|++| ||||+|||||||||++|+++|||||+||+|+|++  .+||||+
T Consensus       252 ~~~~~~~~~~~~~~I~~~~~~vD~~~~~Lv~~P~~fDViv~~NlfGDIlSDlaa~l~GslGl~pSanig~~--~a~fEp~  329 (409)
T 2e0c_A          252 TEEEINQGKPDQGKIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIGMLGGANIGDE--GGMFEAI  329 (409)
T ss_dssp             EHHHHTTTCCCTTSEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEEEETT--EEEEEES
T ss_pred             EEEEEECCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CEEEECC
T ss_conf             78786136887771898388799999998329766734432011117888899886088763542214798--6387589


Q ss_pred             CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEE
Q ss_conf             22034556554248775547279999999999986302573038999999999999999879816323001578887130
Q gi|254780902|r  307 HGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLS  386 (412)
Q Consensus       307 HGSAPd~~g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~  386 (412)
                      ||||||     |||||+| ||+|||||++|||+|+|       +.++|++|++||.+++++|++|+|||+..+  .+.++
T Consensus       330 HGSApd-----iaGk~iA-NP~a~IlS~ammL~~lg-------~~~~A~~Ie~AV~~~l~~g~~T~Dlgg~~g--~~~~~  394 (409)
T 2e0c_A          330 HGTAPK-----YAGKNVA-NPTGIIKAGELMLRWMG-------WNEAADLIEKAINMAIRDKKVTQDIARFMG--VKALG  394 (409)
T ss_dssp             SCCCGG-----GTTTTCS-CTHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHTTCCCHHHHHHHT--SCCCC
T ss_pred             CCCHHH-----HCCCCCC-CCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCC
T ss_conf             886256-----4799876-90999999999999879-------989999999999999976993601265679--98668


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999999
Q gi|254780902|r  387 TTDFIEKISDNLRD  400 (412)
Q Consensus       387 T~ef~daI~~~l~~  400 (412)
                      |+||+|+|+++|++
T Consensus       395 T~e~~daVi~~l~~  408 (409)
T 2e0c_A          395 TKEYADELIKIMDT  408 (409)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHC
T ss_conf             89999999999731


No 11 
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=100.00  E-value=0  Score=726.84  Aligned_cols=350  Identities=18%  Similarity=0.160  Sum_probs=308.1

Q ss_pred             CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC----CCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCC
Q ss_conf             974011386799759863089999999998417----9984489982748998652862778999999865938872644
Q gi|254780902|r    1 MKKIKVTKPVVSLDGDEMTRIIWQLIQENLIHP----YLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATI   76 (412)
Q Consensus         1 m~Kikm~~~Iv~l~GDgiG~Ei~~~~l~vl~~~----~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~   76 (412)
                      |+|   +.+|++|||||||||||+++++||++.    .++++|+++++|.++|++||+++|+++++++++++++||||++
T Consensus         1 Msk---~ykI~vipGDGIGpEv~~~~~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~t~~~~~~~~a~l~g~~~   77 (363)
T 1cnz_A            1 MSK---NYHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFGSVG   77 (363)
T ss_dssp             CCC---CEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECC
T ss_pred             CCC---CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHCCCCCHHHHHHHHHCCCEEEECCC
T ss_conf             999---86599988788879999999999999876609825999996238799975997889999999850411572346


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCC------CCCCCCEEEEECCCCCCCCCCEEEECCC
Q ss_conf             898544321124422110458989732966883058-804878778------8877867998505666300101477788
Q gi|254780902|r   77 TADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLI------PGWKKPIIIGRHAFGDQYRATDFQFPSK  149 (412)
Q Consensus        77 tP~~~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~------~~~~~divivREnteg~Y~gie~~~~~~  149 (412)
                      +|.+++.+..  ..+.+|+|++||+.||||+|+||+ .+++++...      ...++|++|+||||||+|+|.++....+
T Consensus        78 ~p~~~~~~~~--~~~~~s~~~~lR~~ldlyanvRp~~~~~g~~~~~~~~~~~~~~~vD~vivRenteg~Y~~~~~~~~~~  155 (363)
T 1cnz_A           78 GPKWENLPPE--SQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGS  155 (363)
T ss_dssp             CGGGTTSCGG--GSTTHHHHHHHHHHHTCCEEEEEEECCTTCGGGCSBCHHHHHHCCEEEEEEECSSGGGTCSSCEEECC
T ss_pred             CCCCCCCCCC--CCCCCCHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCEECCCCCEECCC
T ss_conf             8887778866--66441368999998288367677773036543468865548899139999966686114666301268


Q ss_pred             CEEEEEEECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHH
Q ss_conf             45999995488861025541246653010111051468899999999998659989999742677751089999999998
Q gi|254780902|r  150 GKLILKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIF  229 (412)
Q Consensus       150 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva  229 (412)
                      ..                     .+.+..+..+|+.+++||+|+||+||++|++|||++||+|||| ++++|+++++|++
T Consensus       156 ~~---------------------~~~~~~~~~~t~~~~~Ri~r~Af~~A~~~~kkVt~v~K~Nilk-~~~lf~~~~~eva  213 (363)
T 1cnz_A          156 GQ---------------------YEKAFDTEVYHRFEIERIARIAFESARKRRRKVTSIDKANVLQ-SSILWREIVNDVA  213 (363)
T ss_dssp             GG---------------------GCEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH
T ss_pred             CC---------------------EEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-CHHHHHHHHHHHH
T ss_conf             85---------------------0699865886389999999999999996799689995586443-1688999999986


Q ss_pred             HHHCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCC
Q ss_conf             6310024542320002436999999985496651-886321023267888877507532312431279875144212222
Q gi|254780902|r  230 EAEFKNQFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHG  308 (412)
Q Consensus       230 ~~~~~~~~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HG  308 (412)
                      ++       ||+|+++++++|++|||||++|++| ||||+|||||||||++|+++||+|++||+|+|+++ ++||||+||
T Consensus       214 ~~-------yp~i~~~~~~vD~~~~~lv~~P~~fdViv~~Nl~GDIlSD~~a~l~GglGl~~s~nig~~~-~a~fEp~HG  285 (363)
T 1cnz_A          214 KT-------YPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQG-FGLYEPAGG  285 (363)
T ss_dssp             TT-------CTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTS-CEEEEESSC
T ss_pred             CC-------CCCEEEEEHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCEECCCC-CEEECCCCC
T ss_conf             22-------8974885144669999985086668778545325889999998843997657742446987-368606788


Q ss_pred             CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEH
Q ss_conf             03455655424877554727999999999998-63025730389999999999999998798163230015788871309
Q gi|254780902|r  309 TVTRHYRQHQQGKETSTNSIASIFAWTRGLLH-RAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLST  387 (412)
Q Consensus       309 SAPd~~g~~iaGk~iA~NP~a~IlS~ammL~h-lg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~T  387 (412)
                      ||||     |||||+| ||+|||||++|||+| +|       +.++|++|++||.+|+++|++|+||++    ..+.+||
T Consensus       286 sapd-----iaGk~~a-NP~a~IlS~ammL~~~lg-------~~~~A~~ie~Av~~~l~~G~~T~Dl~~----~~~~~sT  348 (363)
T 1cnz_A          286 SAPD-----IAGKNIA-NPIAQILSLALLLRYSLD-------ANDAATAIEQAINRALEEGVRTGDLAR----GAAAVST  348 (363)
T ss_dssp             CCGG-----GTTTTCS-CCHHHHHHHHHHHHHHSS-------CHHHHHHHHHHHHHHHHTTCCCGGGTT----TTTCCCH
T ss_pred             CCCC-----CCCCCCC-CCHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCCCCCC----CCCCCCH
T ss_conf             7300-----1688866-939999999999974189-------879999999999999976995745358----9974899


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999999
Q gi|254780902|r  388 TDFIEKISDNLRDAL  402 (412)
Q Consensus       388 ~ef~daI~~~l~~~l  402 (412)
                      +||+|+|+++|++.|
T Consensus       349 ~e~~dai~~~i~~~~  363 (363)
T 1cnz_A          349 DEMGDIIARYVAEGV  363 (363)
T ss_dssp             HHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHC
T ss_conf             999999999986129


No 12 
>1v53_A 3-isopropylmalate dehydrogenase; IPMDH, HOMO dimer, X-RAY analysis, oxidoreductase; 2.85A {Bacillus coagulans} SCOP: c.77.1.1 PDB: 2ayq_A 1v5b_A
Probab=100.00  E-value=0  Score=724.22  Aligned_cols=351  Identities=17%  Similarity=0.171  Sum_probs=306.6

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCC----CCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf             1386799759863089999999998417----998448998274899865286277899999986593887264489854
Q gi|254780902|r    6 VTKPVVSLDGDEMTRIIWQLIQENLIHP----YLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQA   81 (412)
Q Consensus         6 m~~~Iv~l~GDgiG~Ei~~~~l~vl~~~----~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~   81 (412)
                      |+.+|++||||||||||++++++||.+.    .++++|+++++|.++|+++|+++|+++++++++++++||||++||.+.
T Consensus         1 M~~kIavipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~et~~~i~~~da~l~Ga~~~p~~~   80 (366)
T 1v53_A            1 MKMKLAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLDICRRSDAILLGAVGGPKWD   80 (366)
T ss_dssp             CCEEEEEEEESTTHHHHHHHHHHHHHHHHTTSSCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGS
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf             97159998978855999999999999998624997499999657999997599088999999996193699155688767


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCC----C-CCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEE
Q ss_conf             4321124422110458989732966883058-80487877----8-8877867998505666300101477788459999
Q gi|254780902|r   82 RVKEFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRL----I-PGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILK  155 (412)
Q Consensus        82 ~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~----~-~~~~~divivREnteg~Y~gie~~~~~~~~~~i~  155 (412)
                      ..+.. +  ...++|++||+.||||+|+||+ .++++...    . ...++|+|||||||||+|+|.++....+.     
T Consensus        81 ~~~~~-~--~~~~~~~~LR~~ldlyanvRP~~~~~g~~~~sP~~~~~~~~iD~vIvREntEg~Y~g~~~~~~~~~-----  152 (366)
T 1v53_A           81 HNPAS-L--RPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLKRERVENVDLVIVRELTGGLYFGRPSERRGPG-----  152 (366)
T ss_dssp             SSCGG-G--CHHHHHHHHHHHHTCCEEEEEEECCGGGTTTSSBCHHHHTTCEEEEEEECSSBTTTCSCEEEESST-----
T ss_pred             CCCCC-C--CCCCCHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCC-----
T ss_conf             78987-4--742014889997187577755543205566899888888980299963068985657565026887-----


Q ss_pred             EECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             95488861025541246653010111051468899999999998659989999742677751089999999998631002
Q gi|254780902|r  156 FVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKN  235 (412)
Q Consensus       156 ~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~  235 (412)
                                       ...+..++++++..++|++|+||++|++|++|||++||+|||+ ++++|+++++|++++    
T Consensus       153 -----------------~~~~~~~~~~t~~~~~riar~af~~A~~~~kkVt~v~K~nv~~-~~~l~~~~~~eva~~----  210 (366)
T 1v53_A          153 -----------------ENEVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVLE-SSRMWREIAEETAKK----  210 (366)
T ss_dssp             -----------------TCEEEEEEEEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTCH-HHHHHHHHHHHHHTT----
T ss_pred             -----------------CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEC-CCHHHHHHHHHHHHH----
T ss_conf             -----------------6489987413389999999999999986799256742664011-333599999999826----


Q ss_pred             CCCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHH
Q ss_conf             4542320002436999999985496651-886321023267888877507532312431279875144212222034556
Q gi|254780902|r  236 QFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHY  314 (412)
Q Consensus       236 ~~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~  314 (412)
                         ||+|++++++||++|||||++|++| ||||+|||||||||++|+++||+|++||+|++.++ ++||||+||||||  
T Consensus       211 ---yp~i~~~~~~vD~~~~~lv~~P~~fdViv~~Nl~GDIlSD~~a~l~GglGl~~s~ni~~d~-~a~fEp~HGsApd--  284 (366)
T 1v53_A          211 ---YPDVELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGSLGMLPSASLRSDR-FGMYEPVHGSAPD--  284 (366)
T ss_dssp             ---CTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHTTTTSCTTSCEEEEECSSS-CEEEEESSCCCGG--
T ss_pred             ---CCCEEEEEEECHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCEECCCC-CEEECCCCCCHHH--
T ss_conf             ---8977999987428899983186656645214068889999999862775546642656986-4686157786577--


Q ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEHHHHHHH
Q ss_conf             55424877554727999999999998-63025730389999999999999998798163230015788871309999999
Q gi|254780902|r  315 RQHQQGKETSTNSIASIFAWTRGLLH-RAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEK  393 (412)
Q Consensus       315 g~~iaGk~iA~NP~a~IlS~ammL~h-lg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~T~ef~da  393 (412)
                         |||||+| ||+|||||++|||+| +|       ++++|++|++||.+|+++|++|+||..   ...|.++|+||+||
T Consensus       285 ---iaGk~~a-NP~a~ilS~ammL~~~lg-------~~~~a~~i~~Av~~~l~~g~~T~Dl~~---~~gg~~~T~e~~~a  350 (366)
T 1v53_A          285 ---IAGQGKA-NPLGTVLSAALMLRYSFG-------LEKEAAAIEKAVDDVLQDGYCTGDLQV---ANGKVVSTIELTDR  350 (366)
T ss_dssp             ---GTTSSCC-CCHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHTTEESSSSCC---TTCEECCHHHHHHH
T ss_pred             ---HCCCCCC-CCHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCCCCCC---CCCCCCCHHHHHHH
T ss_conf             ---6699875-949999999999986379-------889999999999999985992646566---79970469999999


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999998730
Q gi|254780902|r  394 ISDNLRDALQKNL  406 (412)
Q Consensus       394 I~~~l~~~l~~~~  406 (412)
                      |+++|++.+...+
T Consensus       351 vi~~l~~~~~~~~  363 (366)
T 1v53_A          351 LIEKLNNSAAGPR  363 (366)
T ss_dssp             HHHHCC-------
T ss_pred             HHHHHHHCCCCCC
T ss_conf             9998740034673


No 13 
>3dms_A Isocitrate dehydrogenase [NADP]; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ...
Probab=100.00  E-value=0  Score=727.18  Aligned_cols=364  Identities=19%  Similarity=0.206  Sum_probs=313.1

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCC-------CCCCEEEEEECCHHHHHHHCC--CCCHHHHHHHHHCCEEEECCCCCC
Q ss_conf             86799759863089999999998417-------998448998274899865286--277899999986593887264489
Q gi|254780902|r    8 KPVVSLDGDEMTRIIWQLIQENLIHP-------YLDIKIEYFDLSIQNRDLTDD--QVTIDAAHAIKNCGVGIKCATITA   78 (412)
Q Consensus         8 ~~Iv~l~GDgiG~Ei~~~~l~vl~~~-------~~~i~~e~~d~G~~~~d~tg~--~l~~da~eaik~~~v~lkg~~~tP   78 (412)
                      ++|.+||||||||||++++++||++.       .++|+|+++++|.+++++||+  ++|+++++++++++++||||+++|
T Consensus        37 p~IavIpGDGIGPEV~~aa~kVL~a~~e~~~~~~~~ie~~~~~~G~~~~~~~G~~~~lp~et~~~~~~~da~l~G~~~~P  116 (427)
T 3dms_A           37 PIIPYIEGDGTGFDITPVMIKVVDAAVEKAYGGKKKIHWMEIYAGEKATKVYGPDVWLPEETLQVLKEYVVSIKGPLTTP  116 (427)
T ss_dssp             BEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHTCEEEECCCCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHCCCCCCCHHHHHHHHHCCEEEECCCCCC
T ss_conf             88999766721699999999999999998548999749999947489999749988897999999997499997985589


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCC-CCCCCEEEEECCCCCCCCCCEEEECCCCEEEEE-
Q ss_conf             8544321124422110458989732966883058-8048787788-877867998505666300101477788459999-
Q gi|254780902|r   79 DQARVKEFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIP-GWKKPIIIGRHAFGDQYRATDFQFPSKGKLILK-  155 (412)
Q Consensus        79 ~~~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~-~~~~divivREnteg~Y~gie~~~~~~~~~~i~-  155 (412)
                      .+.         +++|+|+.||+.||||+|+||+ .++++|.+.. +.++|+|||||||||+|+|+++....+....+. 
T Consensus       117 ~~~---------~~~s~~l~LR~~ldlyaniRPvr~~~g~~~p~~~~~~iD~vIVREntEG~Y~g~~~~~~~~~~~~~~~  187 (427)
T 3dms_A          117 VGG---------GIRSLNVALRQELDLYVCLRPIQYFKGVPSPVREPEKTNMVIFRENSEDIYAGIEWAAESEQAKKVIK  187 (427)
T ss_dssp             C-------------CCHHHHHHHHTTCCEEEEEECCCTTCCCSSSCGGGCCEEEEEECSSGGGGCCEECTTCHHHHHHHH
T ss_pred             CCC---------CCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             988---------85762188898747812210245668998755674557658972476210357421235421033655


Q ss_pred             EECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             954888610255412466530101110514688999999999986599-8999974267775108999999999863100
Q gi|254780902|r  156 FVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL-PLYLSTKDTILKSYDGRFKNIFNEIFEAEFK  234 (412)
Q Consensus       156 ~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~-kvt~v~KaNVlk~tdglf~~~~~eva~~~~~  234 (412)
                      +..+...   ........+.++.++.+|+.+++||+|+||++|++|++ +||++||+|||+.|+|+||+++++++++||.
T Consensus       188 ~~~e~~~---~~~~~~~~~~a~~~~~~tr~~~~Riar~AF~~A~~r~~k~vt~v~KaNvl~~s~glf~~~~~~va~~~~~  264 (427)
T 3dms_A          188 FLQEEMG---VKKIRFPQTSGIGIKPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGAFRDAGYALAQKEFG  264 (427)
T ss_dssp             HHHHTSC---CCCCSCGGGCCEECCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHCC---CCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             3032115---3222477524898641208989999999999999769983689967865320067899999999999876


Q ss_pred             CC-------------CCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCE
Q ss_conf             24-------------542320002436999999985496651-8863210232678888775075323124312798751
Q gi|254780902|r  235 NQ-------------FDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKT  300 (412)
Q Consensus       235 ~~-------------~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~  300 (412)
                      .+             ..+++|+++++++|++|||||++|++| ||||+|||||||||++|+++||||++||+|+|++  .
T Consensus       265 ~e~~~~~~~~~~~~~~~~p~i~~~~~~vDa~~~~lv~~P~~FDViv~~NlfGDILSDlaa~l~GslGl~pSanig~~--~  342 (427)
T 3dms_A          265 AELIDGGPWMKFKNPKTGNEIVVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGANLSDS--V  342 (427)
T ss_dssp             CEESTTSSCEEEECTTTCCEEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCTTTCEEEEECSS--C
T ss_pred             HHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCC--C
T ss_conf             66402343001357766786799970447999998539755657740343443113466652377531244556898--7


Q ss_pred             EEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC
Q ss_conf             44212222034556554248775547279999999999986302573038999999999999999879816323001578
Q gi|254780902|r  301 METEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGP  380 (412)
Q Consensus       301 ~mfEp~HGSAPd~~g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~  380 (412)
                      +||||+||||||     |||||+| ||+|||||++|||+|+|       +.++|++|++||.+++++|++|+||++.. +
T Consensus       343 a~FEp~HGSAPd-----iAGk~iA-NP~a~IlS~amML~~lg-------~~~~A~~i~~AV~~vl~~G~~T~Dl~~~~-~  408 (427)
T 3dms_A          343 AMFEATHGTAPK-----YAGKDYV-NPGSEILSAEMMLRHLG-------WTEAADVIISAMEKSIKQKRVTYDFARLM-E  408 (427)
T ss_dssp             EEEEECSCCCGG-----GTTSSCS-CCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHTEECHHHHTTS-S
T ss_pred             EEEECCCCCCHH-----HCCCCCC-CHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCCCHHHCC-C
T ss_conf             698789887234-----4799966-90999999999999779-------98999999999999997599440211036-8


Q ss_pred             CCCCEEHHHHHHHHHHHHH
Q ss_conf             8871309999999999999
Q gi|254780902|r  381 EQDWLSTTDFIEKISDNLR  399 (412)
Q Consensus       381 ~~~~~~T~ef~daI~~~l~  399 (412)
                      ..|.++|+||+|||+++|+
T Consensus       409 ~gg~~sTse~~daVi~~le  427 (427)
T 3dms_A          409 GATQVSCSGFGQVLIENME  427 (427)
T ss_dssp             SCEECCHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHC
T ss_conf             9962179999999998429


No 14 
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=100.00  E-value=0  Score=721.13  Aligned_cols=364  Identities=19%  Similarity=0.161  Sum_probs=308.3

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCC-------CCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCC
Q ss_conf             86799759863089999999998417-------99844899827489986528627789999998659388726448985
Q gi|254780902|r    8 KPVVSLDGDEMTRIIWQLIQENLIHP-------YLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQ   80 (412)
Q Consensus         8 ~~Iv~l~GDgiG~Ei~~~~l~vl~~~-------~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~   80 (412)
                      ++|.+|||||||||||+++++||++.       .++++|.++++|.++++++|+++|+++++++++++++||||+++|.+
T Consensus        36 p~IavIpGDGIGpEV~~~a~~VL~a~~~~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~t~~~i~~~da~l~Ga~~~P~~  115 (435)
T 1tyo_A           36 PVVAFIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWELLAGHLAREKCGELLPKATLEGIRLARVALKGPLETPVG  115 (435)
T ss_dssp             BEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCSHHHHHHHSSSSCHHHHHHHHHHSEEEECCCCCCTT
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCC
T ss_conf             88999797864199999999999999988617888867999715466898659887799999998629799898879999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCC-CCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECC
Q ss_conf             44321124422110458989732966883058804878778-88778679985056663001014777884599999548
Q gi|254780902|r   81 ARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLI-PGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGD  159 (412)
Q Consensus        81 ~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~-~~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~  159 (412)
                      .         +++|+|++||+.||||+|+||+.+.+.|.+. ...++|+|||||||||+|+|+||....+....+..   
T Consensus       116 ~---------~~~s~~l~LRk~ldlyaNvRP~r~~~~~~~~~~~~~iDivIVREntEG~Y~g~e~~~~~~~~~~~~~---  183 (435)
T 1tyo_A          116 T---------GYRSLNVAIRQALDLYANIRPVRYYGQPAPHKYADRVDMVIFRENTEDVYAGIEWPHDSPEAARIRR---  183 (435)
T ss_dssp             S---------CTTHHHHHHHHHHTCCEEEEEEECCSCCCSBTTGGGCEEEEEEECSSSGGGCCEECTTSHHHHHHHH---
T ss_pred             C---------CCCCCCHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEE---
T ss_conf             8---------9666058899875995987666325788775666778869995277775467665556755421020---


Q ss_pred             CCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHHCCC---
Q ss_conf             88610255412466530101110514688999999999986599-89999742677751089999999998631002---
Q gi|254780902|r  160 DGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL-PLYLSTKDTILKSYDGRFKNIFNEIFEAEFKN---  235 (412)
Q Consensus       160 ~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~-kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~---  235 (412)
                       +...+. ...........++.+|+.+++|++|+||+||++|++ +||++||+|||+.|+|+|++|+++++.++|++   
T Consensus       184 -~~~~~~-~~~~~~~~a~~~~~itr~~~~Ri~r~Af~~A~~r~rk~vt~v~KaNv~~~t~glf~~~~~eva~~~f~~~~~  261 (435)
T 1tyo_A          184 -FLAEEF-GISIREDAGIGVKPISRFATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKFREHVV  261 (435)
T ss_dssp             -HHHHHH-CCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEEECTTTSTTTHHHHHHHHHHHHHHHSGGGEE
T ss_pred             -CCHHHH-CEECCCCEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             -350330-331145405888997557789999998999986489808999588610010216999999999877533100


Q ss_pred             -----------CCCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEE
Q ss_conf             -----------4542320002436999999985496651-8863210232678888775075323124312798751442
Q gi|254780902|r  236 -----------QFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMET  303 (412)
Q Consensus       236 -----------~~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mf  303 (412)
                                 .+..++|+++|+|||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|++  ++||
T Consensus       262 ~~~~~~~~yp~v~~e~~I~~~~~~vD~~a~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GglGl~pSan~g~~--~a~f  339 (435)
T 1tyo_A          262 TEQEVQEKYGGVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMAAGMNMGDG--IAVA  339 (435)
T ss_dssp             EHHHHHHHSTTCCCTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECSS--CEEE
T ss_pred             HHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCC--CEEE
T ss_conf             25778875477675652489653677999998239644757985330367888999887447775567567998--2798


Q ss_pred             CCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCC
Q ss_conf             12222034556554248775547279999999999-98630257303899999999999999987981632300157888
Q gi|254780902|r  304 EAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGL-LHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQ  382 (412)
Q Consensus       304 Ep~HGSAPd~~g~~iaGk~iA~NP~a~IlS~ammL-~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~  382 (412)
                      ||+||||||     |||||+| ||+|||||++||| +|+|       +.++|++|++||.+++++|++|+|||+.. .+.
T Consensus       340 EpvHGSAPd-----iaGk~iA-NPia~IlS~amML~~~lg-------~~~~A~~ie~Av~~vl~~g~~T~Dlgg~~-~~~  405 (435)
T 1tyo_A          340 EPVHGTAPK-----YAGKDLI-NPSAEILSASLLIGEFMG-------WREVKSIVEYAIRKAVQSKKVTQDLARHM-PGV  405 (435)
T ss_dssp             EESSCCCGG-----GTTSSCS-CCHHHHHHHHHHHHTTSC-------CHHHHHHHHHHHHHHHHTTCCBHHHHTTS-TTC
T ss_pred             ECCCCCCCC-----CCCCCCC-CHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCC
T ss_conf             689887300-----0699853-919999999999998769-------88999999999999997699460006788-899


Q ss_pred             CCEEHHHHHHHHHHHHHHH
Q ss_conf             7130999999999999999
Q gi|254780902|r  383 DWLSTTDFIEKISDNLRDA  401 (412)
Q Consensus       383 ~~~~T~ef~daI~~~l~~~  401 (412)
                      +.++|+||+|||+++|++.
T Consensus       406 ~~~~T~e~~daVi~~l~~~  424 (435)
T 1tyo_A          406 QPLRTSEYTETLIAYIDEA  424 (435)
T ss_dssp             CCBCHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHH
T ss_conf             8678899999999998775


No 15 
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=100.00  E-value=0  Score=715.99  Aligned_cols=346  Identities=16%  Similarity=0.132  Sum_probs=305.6

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHCC----CCCCEEEEEEC-CHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCC
Q ss_conf             386799759863089999999998417----99844899827-4899865286277899999986593887264489854
Q gi|254780902|r    7 TKPVVSLDGDEMTRIIWQLIQENLIHP----YLDIKIEYFDL-SIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQA   81 (412)
Q Consensus         7 ~~~Iv~l~GDgiG~Ei~~~~l~vl~~~----~~~i~~e~~d~-G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~   81 (412)
                      +.+|++|||||||||||+++++||++.    +++++|+++++ |.+.++++|+++|+++++++++++++||||+++|.+.
T Consensus         5 ~~kI~vlpGDGIGpEV~~~a~~VL~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~lp~et~~~~~~~da~l~Gavg~p~~~   84 (364)
T 3flk_A            5 SFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVGWPDKV   84 (364)
T ss_dssp             CEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHSSSSCTTHHHHHTTSSEEEEEECCBTTTB
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEHHHHHCCCCCHHHHHHHHHCCCEEECCCCCCCCC
T ss_conf             55899989775829999999999999997539974999997411102875098388999999995594266676799888


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCC---CCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEE
Q ss_conf             4321124422110458989732966883058-8048787788---87786799850566630010147778845999995
Q gi|254780902|r   82 RVKEFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIP---GWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFV  157 (412)
Q Consensus        82 ~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~---~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~  157 (412)
                      .     .+..++|+|+.||+.||||+|+||+ .+++++.+.+   ..++|++||||||||+|+|.++.....        
T Consensus        85 ~-----~~~~~~s~~l~LR~~ldLyaniRP~~~~p~~~~~~~~~~~~~vD~vivREnteG~Y~g~~~~~~~~--------  151 (364)
T 3flk_A           85 P-----DHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMFEN--------  151 (364)
T ss_dssp             C-----HHHHHHTTHHHHHHHTTCCEEEEEEECCTTCCCSBTTCCTTSSEEEEEEECSSBTCCCCEEEESTT--------
T ss_pred             C-----CCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC--------
T ss_conf             8-----776634507999997389478878603578776322466688519998002686403677522336--------


Q ss_pred             CCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             4888610255412466530101110514688999999999986599-899997426777510899999999986310024
Q gi|254780902|r  158 GDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL-PLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQ  236 (412)
Q Consensus       158 ~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~-kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~  236 (412)
                                   ...+..+.++.+|+++++|++|+||+||++|+| +||++||+|||+.++++|++++++++++     
T Consensus       152 -------------~~~~~~~~~~~~tr~~~eRiar~Af~~A~~~~rk~vt~v~KaNv~~~~~~~~~~~~~~va~~-----  213 (364)
T 3flk_A          152 -------------TENEIVIQESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMAAH-----  213 (364)
T ss_dssp             -------------STTCEEEEEEEEEHHHHHHHHHHHHHHHHHSSSCEEEEEECTTTSTTHHHHHHHHHHHHHTT-----
T ss_pred             -------------CCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC-----
T ss_conf             -------------66412566534549999999999999999868987255674587402076899999986000-----


Q ss_pred             CCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCC-EEEECCCCCCHHHHH
Q ss_conf             542320002436999999985496651-886321023267888877507532312431279875-144212222034556
Q gi|254780902|r  237 FDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGK-TMETEAAHGTVTRHY  314 (412)
Q Consensus       237 ~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~-~~mfEp~HGSAPd~~  314 (412)
                        ||+++++|++||+++||||++|++| ||||+|||||||||++|+++||+|++||+|+|+++. .+||||+||||||  
T Consensus       214 --~p~i~~~~~~vD~~~~~lv~~P~~fdViv~~Nl~GDIlSD~aa~l~G~lG~~psanig~~~~~~a~fEp~hGsapd--  289 (364)
T 3flk_A          214 --YPHVSWDKQHIDILCARFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAPD--  289 (364)
T ss_dssp             --CTTCEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECTTCSSCEEEEESSCCCTT--
T ss_pred             --CCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCHHH--
T ss_conf             --3434322256999999985288645532466158889999999873874336756567664540341466777577--


Q ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEHHHHHHHH
Q ss_conf             55424877554727999999999998630257303899999999999999987981632300157888713099999999
Q gi|254780902|r  315 RQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKI  394 (412)
Q Consensus       315 g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~T~ef~daI  394 (412)
                         |||||+| ||+|||||++|||+|+|+.+  ..|.++|++|++||.+++++|++|+|||       |.+||+||+|||
T Consensus       290 ---iaGk~iA-NP~a~Ils~ammL~~lg~~~--~~~~~~a~~i~~Av~~~l~~G~~T~Dlg-------G~~sT~e~~dav  356 (364)
T 3flk_A          290 ---IFGKNIA-NPIAMIWSGALMLEFLGQGD--ERYQRAHDDMLNAIERVIADGSVTPDMG-------GTLSTQQVGAAI  356 (364)
T ss_dssp             ---TTTSSCC-CCHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHTCCCGGGT-------CCCCHHHHHHHH
T ss_pred             ---HCCCCCC-CCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHCCCCCCCCC-------CCCCHHHHHHHH
T ss_conf             ---5799840-94999999999999838655--3579999999999999997699676469-------986899999999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254780902|r  395 SDNLRD  400 (412)
Q Consensus       395 ~~~l~~  400 (412)
                      +++|++
T Consensus       357 ~~~l~~  362 (364)
T 3flk_A          357 SDTLAR  362 (364)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
T ss_conf             999861


No 16 
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=100.00  E-value=0  Score=715.65  Aligned_cols=345  Identities=19%  Similarity=0.153  Sum_probs=303.5

Q ss_pred             CCCCCC---CEEEECCCCCCHHHHHHHHHHHHCC----CCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCC
Q ss_conf             401138---6799759863089999999998417----998448998274899865286277899999986593887264
Q gi|254780902|r    3 KIKVTK---PVVSLDGDEMTRIIWQLIQENLIHP----YLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCAT   75 (412)
Q Consensus         3 Kikm~~---~Iv~l~GDgiG~Ei~~~~l~vl~~~----~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~   75 (412)
                      ||.|..   +|++||||||||||++++++||.+.    +++++|+++++|.++|++||+++|+++++++++++++||||+
T Consensus         5 ~~~~~~~~mkIavipGDGIGpEV~~~a~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~G~~lp~etl~~i~~~dail~Gai   84 (366)
T 1vlc_A            5 KIHHHHHHMKIAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLEADAIFLGSV   84 (366)
T ss_dssp             CCCCCCSEEEEEEEEESTHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEEEEC
T ss_pred             CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHEECC
T ss_conf             32315653089998878867999999999999998870997899998456999997789897899999998548555422


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCCC------CCCCEEEEECCCCCCCCCCEEEECC
Q ss_conf             4898544321124422110458989732966883058-80487877888------7786799850566630010147778
Q gi|254780902|r   76 ITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIPG------WKKPIIIGRHAFGDQYRATDFQFPS  148 (412)
Q Consensus        76 ~tP~~~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~~------~~~divivREnteg~Y~gie~~~~~  148 (412)
                      ++|.+++++..  ..+.+|+|++||+.||+|+|+||+ .+++++...+.      .++|+|||||||||+|+|.+.....
T Consensus        85 g~p~~~~~~~~--~~~~~s~~~~LR~~ldlyanvRP~r~~~g~~~~~~~~~~~~~~~iD~vivREnteg~Y~g~~~~~~~  162 (366)
T 1vlc_A           85 GGPKWDDLPPE--KRPEIGGLLALRKMLNLYANIRPIKVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLDE  162 (366)
T ss_dssp             CCGGGTTSCST--TSHHHHTHHHHHHHTTCCEEEEEEECCGGGGGGSSSCHHHHTTCCEEEEEEECSSGGGTEEEEEECS
T ss_pred             CCCCCCCCCCC--CCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf             58886667755--5775551589999708658788653002347777776655577712899703667865566777888


Q ss_pred             CCEEEEEEECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHH
Q ss_conf             84599999548886102554124665301011105146889999999999865998999974267775108999999999
Q gi|254780902|r  149 KGKLILKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEI  228 (412)
Q Consensus       149 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~ev  228 (412)
                      +                         .+..+.++|+.+++||+|+||+||++|++|||++||+|||+ ++++|+++++|+
T Consensus       163 ~-------------------------~a~~~~~~tr~~~~Ria~~Af~~A~~~~k~Vt~v~KaNv~~-~~~lf~~~~~ev  216 (366)
T 1vlc_A          163 E-------------------------KGFDTMIYDRKTVERIARTAFEIAKNRRKKVTSVDKANVLY-SSMLWRKVVNEV  216 (366)
T ss_dssp             S-------------------------CEEEECCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHH
T ss_pred             C-------------------------EEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-CCHHHHHHHHHH
T ss_conf             5-------------------------18998995689999999999999986799479994477644-338899999999


Q ss_pred             HHHHCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCC
Q ss_conf             86310024542320002436999999985496651-88632102326788887750753231243127987514421222
Q gi|254780902|r  229 FEAEFKNQFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAH  307 (412)
Q Consensus       229 a~~~~~~~~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~H  307 (412)
                      +++       ||+|+++++|||++|||||++|++| ||||+|||||||||++|+++||+|++||+|+|++   .||||+|
T Consensus       217 a~~-------yp~I~~~~~~vD~~~~~lv~~P~~fdViv~~Nl~GDIlSDlaa~l~GglGl~ps~nig~~---~~fEp~H  286 (366)
T 1vlc_A          217 ARE-------YPDVELTHIYVDNAAMQLILKPSQFDVILTTNMFGDILSDESAALPGSLGLLPSASFGDK---NLYEPAG  286 (366)
T ss_dssp             HTT-------CTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHTTSSSCGGGCEEEEESSS---EEEEESS
T ss_pred             HHH-------CCCEEEEEEEHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCC---EEECCCC
T ss_conf             977-------898089986398999998639754778855443301788899986387423554424865---2210266


Q ss_pred             CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEE
Q ss_conf             203455655424877554727999999999998-6302573038999999999999999879816323001578887130
Q gi|254780902|r  308 GTVTRHYRQHQQGKETSTNSIASIFAWTRGLLH-RAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLS  386 (412)
Q Consensus       308 GSAPd~~g~~iaGk~iA~NP~a~IlS~ammL~h-lg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~  386 (412)
                      |||||     |||||+| ||+|||||++|||+| +|       +.++|++|++||.+++++|++|+||++.   ..+.++
T Consensus       287 GSApd-----iaGk~ia-NP~a~Ils~ammL~h~lg-------~~~~A~~i~~Av~~~l~~g~~T~Dl~~~---~~~~~~  350 (366)
T 1vlc_A          287 GSAPD-----IAGKNIA-NPIAQILSLAMMLEHSFG-------MVEEARKIERAVELVIEEGYRTRDIAED---PEKAVS  350 (366)
T ss_dssp             CCCTT-----TTTTTCS-CCHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHTTCCCGGGCSS---GGGCCC
T ss_pred             CCHHH-----HCCCCCC-CCHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCCCCCCC---CCCCCC
T ss_conf             87124-----2699864-939999999999875469-------8799999999999999859956232569---999777


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999999
Q gi|254780902|r  387 TTDFIEKISDNLRDA  401 (412)
Q Consensus       387 T~ef~daI~~~l~~~  401 (412)
                      |+||+|||+++|++.
T Consensus       351 T~e~~~av~~~l~~l  365 (366)
T 1vlc_A          351 TSQMGDLICKKLEEI  365 (366)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999975


No 17 
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=100.00  E-value=0  Score=715.79  Aligned_cols=343  Identities=18%  Similarity=0.182  Sum_probs=299.0

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHC----CCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCC
Q ss_conf             679975986308999999999841----7998448998274899865286277899999986593887264489854432
Q gi|254780902|r    9 PVVSLDGDEMTRIIWQLIQENLIH----PYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVK   84 (412)
Q Consensus         9 ~Iv~l~GDgiG~Ei~~~~l~vl~~----~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~   84 (412)
                      +|++|||||||||||++++++|++    .+++++|+++++|+++|+++|+++|+++++++++++++||||+++|.|+..+
T Consensus         3 kI~vipGDGIGpEV~~a~~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~et~~~i~~~da~l~Gav~~p~~~~~~   82 (358)
T 1a05_A            3 KIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAMAADAVILGAVGGPRWDAYP   82 (358)
T ss_dssp             EEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCHHHHHHHHSSSSCHHHHHHHHHCSEEEEEECCCGGGTTSC
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEHHHHHCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCC
T ss_conf             89998978887999999999999998870997699999625142544099388999999997152257030588877879


Q ss_pred             CCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCC--CCCCC---CCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEEC
Q ss_conf             1124422110458989732966883058-804878--77888---77867998505666300101477788459999954
Q gi|254780902|r   85 EFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVP--RLIPG---WKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVG  158 (412)
Q Consensus        85 ~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p--~~~~~---~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~  158 (412)
                      ...   ..+|+|++|||.||||+|+||+ .+++++  .+..+   .++|+|||||||||+|+|.++......        
T Consensus        83 ~~~---~~~~~~l~lR~~ldlyanvRP~k~~pg~~~~spl~~~~~~~iD~vivREnteg~Y~g~~~~~~~~~--------  151 (358)
T 1a05_A           83 PAK---RPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLRPELVRDVDILVVRELTGDIYFGQPRGLEVID--------  151 (358)
T ss_dssp             GGG---SHHHHHHHHHHHHTCCEEEEEEECCTTSGGGCSBCHHHHTTCEEEEEEECSSSTTTCSSCEEEEET--------
T ss_pred             CCC---CCCCHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEECCC--------
T ss_conf             766---776322688886696698778741477667888777776896089980277865477224344478--------


Q ss_pred             CCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             88861025541246653010111051468899999999998659989999742677751089999999998631002454
Q gi|254780902|r  159 DDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFD  238 (412)
Q Consensus       159 ~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~  238 (412)
                        +           ......++.+|+.+++||+|+||++|++|+++||++||+||||.++ +|+++++|++++       
T Consensus       152 --~-----------~~~a~~~~~~t~~~~~ri~~~Af~~a~~~~k~Vt~v~KaNv~~~~~-lf~~~~~eva~~-------  210 (358)
T 1a05_A          152 --G-----------KRRGFNTMVYDEDEIRRIAHVAFRAAQGRRKQLCSVDKANVLETTR-LWREVVTEVARD-------  210 (358)
T ss_dssp             --T-----------EEEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHH-HHHHHHHHHGGG-------
T ss_pred             --C-----------CEEEEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH-HHHHHHHHHHCC-------
T ss_conf             --8-----------4699999997389999999999999982798178985330123478-999999999653-------


Q ss_pred             CCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHH
Q ss_conf             2320002436999999985496651-886321023267888877507532312431279875144212222034556554
Q gi|254780902|r  239 ELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQH  317 (412)
Q Consensus       239 ~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~  317 (412)
                      ||+|++++++||++|||||++|++| ||||+|||||||||++|+++||||++||+|+|++  ++||||+||||||     
T Consensus       211 yp~i~~~~~~vD~~~~~lv~~P~~fdViv~~Nl~GDIlSD~~a~l~GglG~~psanig~~--~a~fEp~hGsapd-----  283 (358)
T 1a05_A          211 YPDVRLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLGEG--RAMYEPIHGSAPD-----  283 (358)
T ss_dssp             CTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEEECSS--CEEEEESSCCCGG-----
T ss_pred             CCCEEEEEEHHHHHHHHHHHCHHHCCEEEECCHHHHHHHHHHHHHCCCCCCCCCEEECCC--CCCCCCCCCCCHH-----
T ss_conf             896699971388999998739144778875406788999999885389766541020687--4223456786443-----


Q ss_pred             HCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEHHHHHHHHHHH
Q ss_conf             24877554727999999999998630257303899999999999999987981632300157888713099999999999
Q gi|254780902|r  318 QQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKISDN  397 (412)
Q Consensus       318 iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~T~ef~daI~~~  397 (412)
                      |||||+| ||+|||||++|||+|++      .++++|++|++||.+|+++|++|+|||+.   ....++|+||+|||+++
T Consensus       284 iaGk~~a-NP~a~Ils~ammL~~~~------g~~~~A~~i~~Av~~~l~~g~~T~Dlgg~---~~~~~~T~~~~~aI~~~  353 (358)
T 1a05_A          284 IAGQDKA-NPLATILSVAMMLRHSL------NAEPWAQRVEAAVQRVLDQGLRTADIAAP---GTPVIGTKAMGAAVVNA  353 (358)
T ss_dssp             GTTTTCS-CCHHHHHHHHHHHHHTS------SCHHHHHHHHHHHHHHHHTTCCCGGGCCT---TSCCCCHHHHHHHHHHT
T ss_pred             HCCCCCC-CCHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHCCCCCCCCCCC---CCCCCCHHHHHHHHHHH
T ss_conf             3699865-93999999999997427------98699999999999999769957355999---99877899999999998


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780902|r  398 LRD  400 (412)
Q Consensus       398 l~~  400 (412)
                      |+.
T Consensus       354 l~~  356 (358)
T 1a05_A          354 LNL  356 (358)
T ss_dssp             TTC
T ss_pred             HCC
T ss_conf             635


No 18 
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=100.00  E-value=0  Score=704.22  Aligned_cols=327  Identities=18%  Similarity=0.204  Sum_probs=297.3

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCC----CCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCC
Q ss_conf             86799759863089999999998417----99844899827489986528627789999998659388726448985443
Q gi|254780902|r    8 KPVVSLDGDEMTRIIWQLIQENLIHP----YLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARV   83 (412)
Q Consensus         8 ~~Iv~l~GDgiG~Ei~~~~l~vl~~~----~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~   83 (412)
                      .+|++|||||||||||+++++||.+.    .++|+|+++++|.++|++||+++|+++++++++++++||||+++|.    
T Consensus         2 y~IavipGDGIGpEV~~~~~~Vl~a~~~~~~~~ie~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~l~G~~~~~~----   77 (336)
T 1wpw_A            2 FTVALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIIDKADIILKGPVGESA----   77 (336)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHHHHHHHHHTTCCEEEEEECCSHHHHHHSSSSSCHHHHHHHHTCSEEEECCCCTTH----
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCC----
T ss_conf             7899978886219999999999999998709987999981658999986991899999999862806974546545----


Q ss_pred             CCCCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCC-CCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCCC
Q ss_conf             21124422110458989732966883058804878778887-78679985056663001014777884599999548886
Q gi|254780902|r   84 KEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPGW-KKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQ  162 (412)
Q Consensus        84 ~~~~l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~~~~-~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~g~  162 (412)
                               .|+|+.||+.||||+|+||.  +.+|+..+++ ++||+||||||||+|+|.++....+....         
T Consensus        78 ---------~~~~l~lR~~ldLyanvRP~--k~~pg~~~~~~~iDivIvREnteG~Y~g~~~~~~~~~~~~---------  137 (336)
T 1wpw_A           78 ---------ADVVVKLRQIYDMYANIRPA--KSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVSDGVAVG---------  137 (336)
T ss_dssp             ---------HHHHHHHHHTTTCCEEEEEE--ECCTTTCCSCSCCEEEEEEECSSBTTTCCEEEEETTEEEE---------
T ss_pred             ---------CCHHHHHHHHCCCCEEEEEE--ECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEE---------
T ss_conf             ---------66468999972873420254--3258988878996889994277775567534554312689---------


Q ss_pred             CEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
Q ss_conf             10255412466530101110514688999999999986599899997426777510899999999986310024542320
Q gi|254780902|r  163 TIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGI  242 (412)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i  242 (412)
                                      ++.+|+.+++||+|+||+||++|++|||++||+|||+.++++|++++++++         +++|
T Consensus       138 ----------------~~~~tr~~~eRIar~Af~~A~~r~~~vt~v~KaNvl~~~~~~~~~~~~~~~---------~~~i  192 (336)
T 1wpw_A          138 ----------------MKIITRFASERIAKVGLNFALRRRKKVTCVHKANVMRITDGLFAEACRSVL---------KGKV  192 (336)
T ss_dssp             ----------------EEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCTTHHHHHHHHHHHHH---------TTTS
T ss_pred             ----------------EEEEEEHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCHHHEEEEEEE---------CEEE
T ss_conf             ----------------999861456499999999999729926999777534001330310012121---------1058


Q ss_pred             EHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             002436999999985496651-8863210232678888775075323124312798751442122220345565542487
Q gi|254780902|r  243 TYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGK  321 (412)
Q Consensus       243 ~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk  321 (412)
                      ++++++||+++||||++|++| ||||+|||||||||++|+++||+|++||+|+|++  .+||||+||||||     ||||
T Consensus       193 ~~~~~~vD~~~~~lv~~P~~fdViv~~Nl~GDIlSD~~a~l~G~lGl~ps~nig~~--~a~fEp~hGsapd-----iaGk  265 (336)
T 1wpw_A          193 EYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSANIGDK--KALFEPVHGAAFD-----IAGK  265 (336)
T ss_dssp             EEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECSS--CEEEEESSCCCTT-----TTTS
T ss_pred             EEEEEEHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCEECCC--CEEEECCCCCCHH-----HCCC
T ss_conf             98534477999999758986657975428787888999998613466654121898--5563034445511-----2699


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHCCCCCCCCEEHHHHHHHHHHHH
Q ss_conf             75547279999999999986302573038999999999999999879-816323001578887130999999999999
Q gi|254780902|r  322 ETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDG-FMTKDLALLIGPEQDWLSTTDFIEKISDNL  398 (412)
Q Consensus       322 ~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G-~~T~DLg~~~~~~~~~~~T~ef~daI~~~l  398 (412)
                      |+| ||+|||||++|||+|+|+.+.+..+.++|++|++||.+++.+| .+|+|||       |.+||+||+|||+++|
T Consensus       266 ~ia-NP~a~Ils~ammL~~lg~~~~~~~~~~~a~~i~~Av~~~~~~~~~~T~DlG-------G~~sT~e~~dai~~~L  335 (336)
T 1wpw_A          266 NIG-NPTAFLLSVSMMYERMYELSNDDRYIKASRALENAIYLVYKERKALTPDVG-------GNATTDDLINEIYNKL  335 (336)
T ss_dssp             SCC-CTHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHCSSCCGGGT-------CCCCHHHHHHHHHHSC
T ss_pred             CCC-CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-------CCCCHHHHHHHHHHHC
T ss_conf             860-809999999999998576653156999999999999999863994377669-------9954999999999732


No 19 
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, structural genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=100.00  E-value=0  Score=706.93  Aligned_cols=331  Identities=18%  Similarity=0.158  Sum_probs=295.6

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCC
Q ss_conf             67997598630899999999984179984489982748998652862778999999865938872644898544321124
Q gi|254780902|r    9 PVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKEFNL   88 (412)
Q Consensus         9 ~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~~~~l   88 (412)
                      +|++|||||||||||+++++||++...+++|+++++|+++|++||+++|+++++++++++++||||+++|.++.      
T Consensus         3 kI~vipGDGIGpEV~~~~~~Vl~a~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~G~vg~p~~~~------   76 (337)
T 1w0d_A            3 KLAIIAGDGIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDAILLGAIGDPSVPS------   76 (337)
T ss_dssp             EEEEEEESTTHHHHHHHHHHHHHHHSTTCEEEECCCSHHHHHHHSCSSCHHHHHHHTTSSEEEEEECCCTTSCT------
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCC------
T ss_conf             89997888753999999999999860686699996305208853993759999999858949878879998998------


Q ss_pred             CCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCC-CCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCCCCEEE
Q ss_conf             422110458989732966883058-8048787788-87786799850566630010147778845999995488861025
Q gi|254780902|r   89 KKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIP-GWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEK  166 (412)
Q Consensus        89 ~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~-~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~g~~~~~  166 (412)
                      +.+.+|+|+.||+.||+|+|+||+ .++++|.+.+ .+++|+|||||||||+|+|.++....+.                
T Consensus        77 ~~~~~~~~l~LR~~ldlyaniRP~r~~~g~~~~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~----------------  140 (337)
T 1w0d_A           77 GVLERGLLLRLRFELDHHINLRPARLYPGVASPLSGNPGIDFVVVREGTEGPYTGNGGAIRVGT----------------  140 (337)
T ss_dssp             THHHHHTHHHHHHHTTCCEEEEEEECCTTCCCSBTTCCCCEEEEEEECSCSGGGCCEEEESTTS----------------
T ss_pred             CCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEECCC----------------
T ss_conf             8766466589999708761466521368888844577898789871025562005786032589----------------


Q ss_pred             EEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHH
Q ss_conf             54124665301011105146889999999999865998999974267775108999999999863100245423200024
Q gi|254780902|r  167 EVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYTH  246 (412)
Q Consensus       167 ~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i~~~~  246 (412)
                           ..+.+..++.+|+.+++||+|+||+||++|+++||++||+||||.|||+|+++++|++++       ||+|+++|
T Consensus       141 -----~~e~a~~~~~~t~~~~~RIar~Afe~A~~rrk~vt~v~Kanv~~~t~glf~~~~~eva~~-------yp~i~~~~  208 (337)
T 1w0d_A          141 -----PNEVATEVSVNTAFGVRRVVADAFERARRRRKHLTLVHKTNVLTFAGGLWLRTVDEVGEC-------YPDVEVAY  208 (337)
T ss_dssp             -----TTCEEEEEEEEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTSHHHHHHHHHHHHHHHTT-------CTTSEEEE
T ss_pred             -----CCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH-------CCCCEEHH
T ss_conf             -----873599986132677767789999999848995699968872145779999999998865-------78734115


Q ss_pred             HHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCC-EEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf             36999999985496651-886321023267888877507532312431279875-1442122220345565542487755
Q gi|254780902|r  247 RLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGK-TMETEAAHGTVTRHYRQHQQGKETS  324 (412)
Q Consensus       247 ~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~-~~mfEp~HGSAPd~~g~~iaGk~iA  324 (412)
                      ++||+++||||++|++| ||||+|||||||||++|+++||+|++||+|+|+++. .+||||+||||||     |||||+|
T Consensus       209 ~~vD~~~~~lv~~P~~fdViv~~Nl~GDilSDlaa~l~GglGl~psan~g~~~~~~a~fEp~HGsapd-----iaGk~ia  283 (337)
T 1w0d_A          209 QHVDAATIHMITDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATRANPSMFEPVHGSAPD-----IAGQGIA  283 (337)
T ss_dssp             EEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECTTCSSCEEEEESSCCCGG-----GTTSSCS
T ss_pred             HHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCHH-----HCCCCCC
T ss_conf             75879999862598537679875156788999998861865325666667431331000356665054-----4699964


Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEHHHHHHHHHHHH
Q ss_conf             47279999999999986302573038999999999999999879816323001578887130999999999999
Q gi|254780902|r  325 TNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKISDNL  398 (412)
Q Consensus       325 ~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~T~ef~daI~~~l  398 (412)
                       ||+|||||++|||+|||       +.++|++|++||.+++.++.     +       +.++|+||+|||+++|
T Consensus       284 -NP~a~ils~ammL~~lg-------~~~~a~~i~~Av~~~l~~~~-----~-------~~~~T~d~gdav~~~l  337 (337)
T 1w0d_A          284 -DPTAAIMSVALLLSHLG-------EHDAAARVDRAVEAHLATRG-----S-------ERLATSDVGERIAAAL  337 (337)
T ss_dssp             -CCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHCT-----T-------CCCCHHHHHHHHHHTC
T ss_pred             -CCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHCC-----C-------CCCCHHHHHHHHHHCC
T ss_conf             -95999999999999859-------97899999999999997359-----9-------9778399999999649


No 20 
>1g2u_A IPMDH, 3-isopropylmalate dehydrogenase; beta-barrel, NAD binding, oxidoreductase; 2.10A {Thermus thermophilus HB8} SCOP: c.77.1.1 PDB: 1osj_A 1gc8_A 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1gc9_A 1ipd_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=100.00  E-value=0  Score=694.55  Aligned_cols=331  Identities=18%  Similarity=0.172  Sum_probs=293.2

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHC----CCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCC
Q ss_conf             679975986308999999999841----7998448998274899865286277899999986593887264489854432
Q gi|254780902|r    9 PVVSLDGDEMTRIIWQLIQENLIH----PYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVK   84 (412)
Q Consensus         9 ~Iv~l~GDgiG~Ei~~~~l~vl~~----~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~   84 (412)
                      +|++|||||||||||+++++||++    .+++++|+++++|.++++++|+++|+++++++++++++||||++||.|+..+
T Consensus         2 kIavipGDGIGpEv~~~~~~Vl~a~~~~~~~~ie~~~~~~G~~~~~~~G~~lp~~t~~~i~~~da~l~Ga~~~p~~~~~~   81 (345)
T 1g2u_A            2 KVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDGLP   81 (345)
T ss_dssp             EEEEEEESTTHHHHHHHHHHHHHHHHHHHCCCCEEEECCCTHHHHHHHSSSSCHHHHHHHHHCSEEEEEECCCGGGTTSC
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             89998878778999999999999999862998699999834412886599188999999997407660676798768888


Q ss_pred             CCCCCCCCCCHHHHHHHHCCCEEEEEEEE-ECCCCCCCC-----CCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEEC
Q ss_conf             11244221104589897329668830588-048787788-----877867998505666300101477788459999954
Q gi|254780902|r   85 EFNLKKMWKSPNGTIRNILGGIIFREPII-CSNVPRLIP-----GWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVG  158 (412)
Q Consensus        85 ~~~l~~~~~S~n~~LR~~ldl~~~~rp~~-~~~~p~~~~-----~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~  158 (412)
                      ..   ....|.++.||+.||||+|+||+. +++++...+     ..++|++||||||||+|+|.++....+         
T Consensus        82 ~~---~~~~~~~~~lR~~ldl~anvrp~~~~~~~~~~~p~~~~~~~~id~vivREnteg~Y~g~~~~~~~~---------  149 (345)
T 1g2u_A           82 RK---IRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEA---------  149 (345)
T ss_dssp             GG---GCHHHHHHHHHHHTTEEEEEEEEECCTTCGGGSSSCHHHHTTCEEEEEEECSCSTTTCSSCEECSS---------
T ss_pred             CC---CCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCCC---------
T ss_conf             55---575321366898725211244332147765468876566677406998745786205764221022---------


Q ss_pred             CCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             88861025541246653010111051468899999999998659989999742677751089999999998631002454
Q gi|254780902|r  159 DDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFD  238 (412)
Q Consensus       159 ~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~  238 (412)
                                      .++.++.+|+.+++||+|+||+||++|+++||++||+||||.++ +|+++++|++++       
T Consensus       150 ----------------~a~~~~~~tr~~~eRi~r~Af~~A~~~~k~Vt~v~KaNv~~~~~-~~~~~~~eva~~-------  205 (345)
T 1g2u_A          150 ----------------EAWNTERYSKPEVERVARVAFEVARKRRKHVVSVDKANVLEVGE-FWRKTVEEVGRG-------  205 (345)
T ss_dssp             ----------------CEECCCCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHH-HHHHHHHHHHTT-------
T ss_pred             ----------------CCCCEEEECHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCH-HHHHHHHHHHCC-------
T ss_conf             ----------------12561687399999999999999997599457752656555545-788999998542-------


Q ss_pred             CCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHH
Q ss_conf             2320002436999999985496651-886321023267888877507532312431279875144212222034556554
Q gi|254780902|r  239 ELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQH  317 (412)
Q Consensus       239 ~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~  317 (412)
                      ||+|+++|++||+++||||++|++| ||||+|||||||||++|+++||+|++||+|+|++  ++||||+||||||     
T Consensus       206 yp~i~~~~~~vD~~~~~lv~~P~~fdViv~~Nl~GDIlSDl~a~l~GglGl~~s~nig~~--~a~fEp~HGsApd-----  278 (345)
T 1g2u_A          206 YPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRG--TPVFEPVHGSAPD-----  278 (345)
T ss_dssp             CTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTSCGGGCEEEEEESS--CCEEEESSCCCGG-----
T ss_pred             CCCEEEEEHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCCCCCCCHHH-----
T ss_conf             897589850376999986128765785531416788999999986278666664203787--3312434564445-----


Q ss_pred             HCCCCCCCCHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEHHHHHHHHHH
Q ss_conf             24877554727999999999998-63025730389999999999999998798163230015788871309999999999
Q gi|254780902|r  318 QQGKETSTNSIASIFAWTRGLLH-RAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKISD  396 (412)
Q Consensus       318 iaGk~iA~NP~a~IlS~ammL~h-lg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~T~ef~daI~~  396 (412)
                      |||||+| ||+|||||++|||+| +|       ++++|++|++||.++++++ +|+|||       |.+||+||+|+|++
T Consensus       279 iaGk~ia-NP~a~Ils~ammL~~~lg-------~~~~a~~i~~Av~~~l~~~-~T~DlG-------G~a~T~e~~~aii~  342 (345)
T 1g2u_A          279 IAGKGIA-NPTAAILSAAMMLEHAFG-------LVELARKVEDAVAKALLET-PPPDLG-------GSAGTEAFTATVLR  342 (345)
T ss_dssp             GTTSSCC-CCHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHS-CCGGGT-------CCCCHHHHHHHHHH
T ss_pred             CCCCCCC-CCHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCC-CCCCCC-------CCCCHHHHHHHHHH
T ss_conf             0799864-969999999999974179-------8799999999999999648-996569-------99679999999999


Q ss_pred             HH
Q ss_conf             99
Q gi|254780902|r  397 NL  398 (412)
Q Consensus       397 ~l  398 (412)
                      +|
T Consensus       343 ~l  344 (345)
T 1g2u_A          343 HL  344 (345)
T ss_dssp             HC
T ss_pred             HH
T ss_conf             64


No 21 
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=100.00  E-value=0  Score=683.43  Aligned_cols=325  Identities=23%  Similarity=0.234  Sum_probs=290.8

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCC
Q ss_conf             86799759863089999999998417998448998274899865286277899999986593887264489854432112
Q gi|254780902|r    8 KPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKEFN   87 (412)
Q Consensus         8 ~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~~~~   87 (412)
                      ++|++|||||||||||+++++++.+..++|+|+++++| +.+.++|+.+|+++++++++++++||||+++|.+       
T Consensus        22 y~I~vlpGDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g-~~~~~~g~~~p~~~~~~~~~~~~~l~G~~~~p~~-------   93 (354)
T 3blx_B           22 YTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVS-PIFVNGLTTIPDPAVQSITKNLVALKGPLATPIG-------   93 (354)
T ss_dssp             EECBCCCCSTTHHHHHHHHHHHHHTTTCSEECCCCCCC-CEEETTEEECCHHHHHHHHHHSEEEECCCCCC---------
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECEE-HHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC-------
T ss_conf             89999887656799999999999965998359995600-7975789858979999999737524788778641-------


Q ss_pred             CCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCCCCEEE
Q ss_conf             4422110458989732966883058-804878778887786799850566630010147778845999995488861025
Q gi|254780902|r   88 LKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEK  166 (412)
Q Consensus        88 l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~g~~~~~  166 (412)
                        .+.+|+|+.||++||||+|+||. .+++++..  ..++|++||||||||+|+|.++....+...              
T Consensus        94 --~~~~~~~l~LR~~ldlyanlRP~~~~~g~~~~--~~~iD~vivREnteG~Y~g~~~~~~~~~~~--------------  155 (354)
T 3blx_B           94 --KGHRSLNLTLRKTFGLFANVRPAKSIEGFKTT--YENVDLVLIRENTEGEYSGIEHIVCPGVVQ--------------  155 (354)
T ss_dssp             ----CCCHHHHHHHHHTEEEEEEEEECCTTCCCS--SCSCEEEEEEECSSEEEEEEEEECSTTEEE--------------
T ss_pred             --CCCCCCCHHHHHHCCCCEEEEEEEECCCCCCC--CCCCCEEEEHHCCCCCCCCCCCCCCCCCCE--------------
T ss_conf             --13334114479875991745778855886454--456776887310378756755545541211--------------


Q ss_pred             EEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCC-CCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHH
Q ss_conf             541246653010111051468899999999998659-9899997426777510899999999986310024542320002
Q gi|254780902|r  167 EVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQ-LPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYT  245 (412)
Q Consensus       167 ~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~-~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i~~~  245 (412)
                                 .+..+|+.+++||+|+||++|++|+ ++||++||+|||+.++|+||++++|++++       ||+|+++
T Consensus       156 -----------~~~~~Tr~~~eRI~r~AFe~Ar~~~rkkvt~v~Kanv~~~s~glf~~~~~eva~e-------ypdi~~~  217 (354)
T 3blx_B          156 -----------SIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTIQRLADGLFVNVAKELSKE-------YPDLTLE  217 (354)
T ss_dssp             -----------EEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEESCTTTCHHHHHHHHHHHHHGGG-------CTTSEEE
T ss_pred             -----------EEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHH-------CCCCCCH
T ss_conf             -----------3357861168899999899999738997337862553013089999999999987-------6876210


Q ss_pred             HHHHHHHHHHHHCCCCCE---EEEECCCCCHHHHHHHHHH-HCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             436999999985496651---8863210232678888775-075323124312798751442122220345565542487
Q gi|254780902|r  246 HRLIDDMVASSIKWSGGY---IWACKNYDGDVQSDIVAQG-FGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGK  321 (412)
Q Consensus       246 ~~~vD~~~~~lv~~P~~f---Vivt~NL~GDIlSD~aa~l-~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk  321 (412)
                      |++||+++||||++|++|   ||||+|||||||||++|++ .||+|++||+|+|++  .+||||+||||||     ||||
T Consensus       218 ~~~vD~~a~~lv~~P~~fD~~Viv~~NlfGDIlSDl~a~l~~G~~g~~~s~~~g~~--~~~fEp~HGSApd-----iaGk  290 (354)
T 3blx_B          218 TELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGLSAGSLGLTPSANIGHK--ISIFEAVHGSAPD-----IAGQ  290 (354)
T ss_dssp             EEEHHHHHHHHHHCGGGGTTEEEEECHHHHHHHHHHHHHHHTSSGGGCEEEEEESS--CEEEEECSCCCGG-----GTTT
T ss_pred             HHEEHHHHHHHHCCHHHHCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCCCHH-----HCCC
T ss_conf             20241677775029877265345324046788888876512675443444333333--2224777776254-----3699


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHCCCCCCCCEEHHHHHHHHHHHH
Q ss_conf             75547279999999999986302573038999999999999999879--816323001578887130999999999999
Q gi|254780902|r  322 ETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDG--FMTKDLALLIGPEQDWLSTTDFIEKISDNL  398 (412)
Q Consensus       322 ~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G--~~T~DLg~~~~~~~~~~~T~ef~daI~~~l  398 (412)
                      |+| ||+|||||++|||||+|       +.++|++|++||.+++++|  ++|+|||       |.+||+||+|||+++|
T Consensus       291 ~ia-NP~a~IlS~amML~~lg-------~~~~a~~i~~Av~~~l~~G~~~~T~Dlg-------G~~~T~e~~davi~~l  354 (354)
T 3blx_B          291 DKA-NPTALLLSSVMMLNHMG-------LTNHADQIQNAVLSTIASGPENRTGDLA-------GTATTSSFTEAVIKRL  354 (354)
T ss_dssp             TCC-CTHHHHHHHHHHHHHHT-------CHHHHHHHHHTHHHHHTSSTTSSCGGGT-------CCCCHHHHHHHHHHTC
T ss_pred             CCC-CCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHCCCCCCCCCC-------CCCCHHHHHHHHHHCC
T ss_conf             863-91999999999999879-------9789999999999999848875185559-------9965999999999669


No 22 
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=100.00  E-value=0  Score=674.57  Aligned_cols=327  Identities=19%  Similarity=0.208  Sum_probs=288.8

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCC
Q ss_conf             38679975986308999999999841799844899827489986528627789999998659388726448985443211
Q gi|254780902|r    7 TKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKEF   86 (412)
Q Consensus         7 ~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~~~   86 (412)
                      +.+|++||||||||||+++++++|++..++++|++++++...+.    ..+.++++++++++++++|+..+|..      
T Consensus        17 ~y~IavLpGDGIGpEV~~a~~~Vl~a~~~~i~~~~~~~~~~~~~----~~~~e~~~~~~~~~~~~~g~~~~~~~------   86 (349)
T 3blx_A           17 RFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQTDHK----EGVYEAVESLKRNKIGLKGLWHTPAD------   86 (349)
T ss_dssp             CEEEEEEEESHHHHHHHHHHHHHHHHTTCSEEEEECCCSSTTCH----HHHHHHHHHHHHHSEEEEEECCSHHH------
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC----CCCHHHHHHHHHCCCCCCCCCCCCCC------
T ss_conf             75999989760189999999999995799978599635677676----45188999986038616577778644------


Q ss_pred             CCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCC-CCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCCCCEE
Q ss_conf             2442211045898973296688305880487877888-778679985056663001014777884599999548886102
Q gi|254780902|r   87 NLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPG-WKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIE  165 (412)
Q Consensus        87 ~l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~~~-~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~g~~~~  165 (412)
                        ...++|+|+.||+.||||+|+||  ++.+|+..++ .++||+||||||||+|+|.++....+..              
T Consensus        87 --~~~~~s~~l~LRk~ldLyanvRP--~k~~~g~~~~~~~iDivIvREnteG~Y~g~~~~~~~~~~--------------  148 (349)
T 3blx_A           87 --QTGHGSLNVALRKQLDIYANVAL--FKSLKGVKTRIPDIDLIVIRENTEGEFSGLEHESVPGVV--------------  148 (349)
T ss_dssp             --HHTCHHHHHHHHHTSCEEEEEEE--EECCTTCCCSSCSCEEEEEEECSSGGGGCEEEECSTTEE--------------
T ss_pred             --CCCCCCCCHHHHHHCCCCCCEEE--ECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC--------------
T ss_conf             --66654510465887388704464--520056555678977799860568500685243442001--------------


Q ss_pred             EEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEH
Q ss_conf             55412466530101110514688999999999986599-89999742677751089999999998631002454232000
Q gi|254780902|r  166 KEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL-PLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITY  244 (412)
Q Consensus       166 ~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~-kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i~~  244 (412)
                                 ..++.+|+.+++||+|+||++|++|++ +||++||+|||+.++|+|+++++++++++|++      |++
T Consensus       149 -----------~~~~~~tr~~~eRiar~AFe~A~~r~~k~vt~v~KaNvl~~s~glf~~~~~e~a~~~yp~------v~~  211 (349)
T 3blx_A          149 -----------ESLKVMTRPKTERIARFAFDFAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEYPD------IDV  211 (349)
T ss_dssp             -----------EEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTHHHHHHHHHHHHHHHHCTT------SEE
T ss_pred             -----------CCEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCC------CHH
T ss_conf             -----------122576499999999999999886289863799757765234203999999998742885------112


Q ss_pred             HHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECC-CCCCHHHHHHHHHCCCC
Q ss_conf             2436999999985496651-886321023267888877507532312431279875144212-22203455655424877
Q gi|254780902|r  245 THRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEA-AHGTVTRHYRQHQQGKE  322 (412)
Q Consensus       245 ~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp-~HGSAPd~~g~~iaGk~  322 (412)
                      ++++||+++||||++|++| ||||+|||||||||++|+++||||++||+|+|++  .++||| +||||||     |||||
T Consensus       212 ~~~~vD~~~~~lv~~P~~fdVIv~~Nl~GDIlSD~~a~l~G~lGl~psanig~~--~~~fep~~hGsapd-----iaG~~  284 (349)
T 3blx_A          212 SSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGGPGLVAGANFGRD--YAVFEPGSRHVGLD-----IKGQN  284 (349)
T ss_dssp             EEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEEESS--CEEECCTTTTSCC-------CCTT
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CEEEEECCCCCCHH-----HCCCC
T ss_conf             366688999886238766647764225688999999875078777874446887--51254456655422-----34898


Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHCCCCCCCCEEHHHHHHHHHHHHHH
Q ss_conf             55472799999999999863025730389999999999999998798-1632300157888713099999999999999
Q gi|254780902|r  323 TSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGF-MTKDLALLIGPEQDWLSTTDFIEKISDNLRD  400 (412)
Q Consensus       323 iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~-~T~DLg~~~~~~~~~~~T~ef~daI~~~l~~  400 (412)
                      +| ||+|||||++|||+|+|+       .++|++|++||.+++++|. +|+|||       |.+||+||+|+|+++|++
T Consensus       285 ia-NP~a~ils~ammL~~lg~-------~~~a~~i~~Av~~~l~~g~~~T~Dlg-------G~~~t~e~~~aii~~l~~  348 (349)
T 3blx_A          285 VA-NPTAMILSSTLMLNHLGL-------NEYATRISKAVHETIAEGKHTTRDIG-------GSSSTTDFTNEIINKLST  348 (349)
T ss_dssp             CS-CCHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHSSSSCBGGGT-------CCBCHHHHHHHHHHHHHT
T ss_pred             CC-CCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHCCCCCCCCCC-------CCCCHHHHHHHHHHHHHH
T ss_conf             51-949999999999998799-------89999999999999983990451028-------887399999999999963


No 23 
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A*
Probab=99.83  E-value=3.2e-17  Score=125.46  Aligned_cols=310  Identities=15%  Similarity=0.130  Sum_probs=207.0

Q ss_pred             CCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHH------HHHHHCCC
Q ss_conf             179984489982748998652862778999999865938872644898544321124422110458------98973296
Q gi|254780902|r   32 HPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKSPNG------TIRNILGG  105 (412)
Q Consensus        32 ~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~~~~l~~~~~S~n~------~LR~~ldl  105 (412)
                      +.+-++-....|-|..+..--.+-+.|..+-++-+.+--.-||-+.+.....   .++-  +|--.      .--+.-+ 
T Consensus       324 ~~~P~lAMVdSdkGITNLHVPsDVIIDASMPAmIR~~GkmW~~dG~~~Dtka---vIPD--~sYA~vYq~~I~~ck~~G-  397 (741)
T 1itw_A          324 AQRPQLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGKMWGPDGKLHDTKA---VIPD--RCYAGVYQVVIEDCKQHG-  397 (741)
T ss_dssp             HHSCCBCEEETTTTEETTTCTTTSBHHHHHHHHHHTTTEEECTTSSEEEEEE---ECCS--HHHHHHHHHHHHHHHHHC-
T ss_pred             HHCCHHHHCCCCCCCCCCCCCCCEEEECCCHHHHHCCCCCCCCCCCCCCCEE---ECCC--CCHHHHHHHHHHHHHHCC-
T ss_conf             7294143133455744456886546746628987556651289999210247---4467--404889999999999729-


Q ss_pred             EEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCE--EEECCCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEECC
Q ss_conf             68830588048787788877867998505666300101--4777884599999548886102554124665301011105
Q gi|254780902|r  106 IIFREPIICSNVPRLIPGWKKPIIIGRHAFGDQYRATD--FQFPSKGKLILKFVGDDGQTIEKEVFDSPGSGIAMAMYNL  183 (412)
Q Consensus       106 ~~~~rp~~~~~~p~~~~~~~~divivREnteg~Y~gie--~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~t  183 (412)
                       + ..|...    +.     ++-|=.=-.-..+|++.+  |.+..+|+..+  ...+|.  ....+.....++|..+...
T Consensus       398 -a-fDPttm----Gs-----V~NVGLMAqKAEEYGSHdkTFe~~~~G~v~v--v~~~G~--vl~eh~Ve~gDIwR~cq~k  462 (741)
T 1itw_A          398 -A-FDPTTM----GS-----VPNVGLMAQKAEEYGSHDKTFQIPADGVVRV--TDESGK--LLLEQSVEAGDIWRMCQAK  462 (741)
T ss_dssp             -S-CCTTTC----CC-----CCEEECCTTTCGGGGCGGGEEECSSSEEEEE--EETTCC--EEEEEEECTTCEEEEEEEC
T ss_pred             -C-CCCCCC----CC-----CCCHHHHCCCHHHCCCCCCCEECCCCEEEEE--ECCCCC--EEEEEEECCCCEEEEECCC
T ss_conf             -9-994012----34-----6721643368154088887554379908999--918997--9999886168866530476


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHH-HHHHHH--HHHHHCCC
Q ss_conf             146889999999999865998999974267775108999999999863100245423200024-369999--99985496
Q gi|254780902|r  184 DDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYTH-RLIDDM--VASSIKWS  260 (412)
Q Consensus       184 ~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i~~~~-~~vD~~--~~~lv~~P  260 (412)
                      +..|+.|++.|++.|+..+.++++-.+.|-- ....+..++-....      +.+-.++.++- -.++++  .+.-++++
T Consensus       463 d~~I~dWvkLav~Ra~~t~~pavFWLd~~Ra-hd~~li~kV~~yL~------~~dt~gldi~Im~p~~A~~~sl~r~~~G  535 (741)
T 1itw_A          463 DAPIQDWVKLAVNRARATNTPAVFWLDPARA-HDAQVIAKVERYLK------DYDTSGLDIRILSPVEATRFSLARIREG  535 (741)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCEEEECCTTSH-HHHHHHHHHHHHHT------TSCCTTCCEEEECHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHCCCEEEEECCCCC-CHHHHHHHHHHHHH------HCCCCCCCEEEECHHHHHHHHHHHHHCC
T ss_conf             1679999999999999868965998666535-29999999999987------4599888537658999999999998659


Q ss_pred             CCEEEEECCCCCHHHHHHHHHH-HCCCCCCEEEECCCCCCEEEEC-CCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf             6518863210232678888775-0753231243127987514421-2222034556554248775547279999999999
Q gi|254780902|r  261 GGYIWACKNYDGDVQSDIVAQG-FGSLGLMTSVLITADGKTMETE-AAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGL  338 (412)
Q Consensus       261 ~~fVivt~NL~GDIlSD~aa~l-~GglGlapSanig~~~~~~mfE-p~HGSAPd~~g~~iaGk~iA~NP~a~IlS~ammL  338 (412)
                      ++.+.||.|+.+|||||+...| .|+.+.+-|.-...+| .+||| +.+||||+|+.|-+..--+.|++++.+|+++--|
T Consensus       536 ~dtIsvtGNVLRDYLTDLFPILElGTSAKMLSIVpLm~G-GgLFETGAGGSAPKhvqQ~~~E~hLRWDSLGEflAla~SL  614 (741)
T 1itw_A          536 KDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMSG-GGLFETGAGGSAPKHVQQFLEEGYLRWDSLGEFLALAASL  614 (741)
T ss_dssp             CCCEEEECHHHHHHHHHHHHHHHHSCSSSSEEEEEBTTS-CEEEESCSSCCCHHHHHHHHHHSCCCCCCHHHHHHHHHHH
T ss_pred             CCEEEECCCCHHHHHHHHHHHHCCCHHHHHHHEEEECCC-CEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             984876430078777645555324316535432565158-7146249999705999999762840136189899999999


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             98630257303899999999999999987981
Q gi|254780902|r  339 LHRAKLDENAELKKFAENLERVCIKTVEDGFM  370 (412)
Q Consensus       339 ~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~  370 (412)
                      +|+++..+|++....|+.|+.|+.+.|++++-
T Consensus       615 e~la~~~~N~ka~vla~~Ld~At~~~L~~~ks  646 (741)
T 1itw_A          615 EHLGNAYKNPKALVLASTLDQATGKILDNNKS  646 (741)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99986248937899999999999999856999


No 24 
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum}
Probab=99.54  E-value=5.5e-11  Score=86.53  Aligned_cols=321  Identities=17%  Similarity=0.163  Sum_probs=197.7

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHH--
Q ss_conf             899999999984179984489982748998652862778999999865938872644898544321124422110458--
Q gi|254780902|r   20 RIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKSPNG--   97 (412)
Q Consensus        20 ~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~~~~l~~~~~S~n~--   97 (412)
                      .||-..+..++ +.+-++-...-|-|..+..--.+-+.|..+-++-|.+--.-||-+......    .+-+. +|--.  
T Consensus       309 ~~I~adi~~~~-~~~P~lAMVdSdkGITNLHVPSDVIIDASMPAmIR~~GkmW~~dG~~~Dtk----avIPD-~sYA~iY  382 (738)
T 2b0t_A          309 EEIKAAFEKGL-EDGPDLAMVNSARGITNLHVPSDVIVDASMPAMIRTSGHMWNKDDQEQDTL----AIIPD-SSYAGVY  382 (738)
T ss_dssp             HHHHHHHHHHH-HHSCCBCEEEGGGTEETTTCTTTSBHHHHHHHHHHTTTEEECTTSCEEEEE----EECSS-HHHHHHH
T ss_pred             HHHHHHHHHHH-HCCCCEEEEECCCCCCCCCCCCCEEEECCCHHHHHHCCCEECCCCCCCCCE----EECCC-CHHHHHH
T ss_conf             56999999998-619974776157784356688655672675899983062389998815433----85465-3137899


Q ss_pred             ----HHHHHCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCE--EEECCCCEEEEEEECCCCCCEEEEEECC
Q ss_conf             ----9897329668830588048787788877867998505666300101--4777884599999548886102554124
Q gi|254780902|r   98 ----TIRNILGGIIFREPIICSNVPRLIPGWKKPIIIGRHAFGDQYRATD--FQFPSKGKLILKFVGDDGQTIEKEVFDS  171 (412)
Q Consensus        98 ----~LR~~ldl~~~~rp~~~~~~p~~~~~~~~divivREnteg~Y~gie--~~~~~~~~~~i~~~~~~g~~~~~~~~~~  171 (412)
                          ..-+.-+  + ..|...-++|    .     |=.=-.---+|+..+  |.+...|+.  .++.++|.  ....+..
T Consensus       383 q~~I~~ck~~G--a-fDPttmGsV~----N-----VGLMAqKAEEYGSHdkTFe~~~~G~v--~vv~~~G~--vl~eh~V  446 (738)
T 2b0t_A          383 QTVIEDCRKNG--A-FDPTTMGTVP----N-----VGLMAQKAEEYGSHDKTFRIEADGVV--QVVSSNGD--VLIEHDV  446 (738)
T ss_dssp             HHHHHHHHHHC--S-CCTTTCCCCC----E-----EECCTTTCGGGGCGGGEEECCSSEEE--EEECTTSC--EEEEEEE
T ss_pred             HHHHHHHHHCC--C-CCCHHCCCCC----C-----HHHHCCCHHHHCCCCCCEECCCCCEE--EEEECCCC--EEEEEEE
T ss_conf             99999999749--9-8940115777----6-----16530275863888863544899669--99979998--9999876


Q ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHH-HHHH
Q ss_conf             665301011105146889999999999865998999974267775108999999999863100245423200024-3699
Q gi|254780902|r  172 PGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYTH-RLID  250 (412)
Q Consensus       172 ~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i~~~~-~~vD  250 (412)
                      ....+|..+.....+|+.|++.|...|+..+.+..+--..|--  -|.-..+-+..-.++     .+-.+++.+- -.++
T Consensus       447 e~GDIwR~cq~kd~pi~dWvkLav~Rar~t~~pavFWLd~~Ra--Hd~~li~kv~~yL~~-----~dt~gl~i~im~p~~  519 (738)
T 2b0t_A          447 EANDIWRACQVKDAPIQDWVKLAVTRSRLSGMPAVFWLDPERA--HDRNLASLVEKYLAD-----HDTEGLDIQILSPVE  519 (738)
T ss_dssp             CTTCEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEECCTTCH--HHHHHHHHHHHHHTT-----SCCTTCCEEEECHHH
T ss_pred             CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCC--CHHHHHHHHHHHHHH-----CCCCCCCEEEECHHH
T ss_conf             4765166753356069999999999988619966896078886--319999999999986-----488898527518999


Q ss_pred             HHHHHH--HCCCCCEEEEECCCCCHHHHHHHHHH-HCCCCCCEEEECCCCCCEEEECC-CCCCHHHHHHHHHCCCCCCCC
Q ss_conf             999998--54966518863210232678888775-07532312431279875144212-222034556554248775547
Q gi|254780902|r  251 DMVASS--IKWSGGYIWACKNYDGDVQSDIVAQG-FGSLGLMTSVLITADGKTMETEA-AHGTVTRHYRQHQQGKETSTN  326 (412)
Q Consensus       251 ~~~~~l--v~~P~~fVivt~NL~GDIlSD~aa~l-~GglGlapSanig~~~~~~mfEp-~HGSAPd~~g~~iaGk~iA~N  326 (412)
                      ++-.-|  +++-+.-+-||.|...|||+|+..-| .|.-.-+-|.---..| .+|||- ..||||+|+-|-+.---+.|.
T Consensus       520 A~~~tl~r~~~G~dtIsvTGNVLRDYLTDLFPIlElGTSAKMLSIVPLm~G-GglfETGAGGSAPKhVqQ~~~EnhLRWD  598 (738)
T 2b0t_A          520 ATQLSIDRIRRGEDTISVTGNVLRDYNTDLFPILELGTSAKMLSVVPLMAG-GGLFETGAGGSAPKHVQQVQEENHLRWD  598 (738)
T ss_dssp             HHHHHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSSCEEEEEBTTS-CEEEECCSSCCCHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHHHCCCCEEEEECHHHHHHHCCHHHHHHCCCCCCHHEEEEECCC-CCEEECCCCCCCCHHHHHHHHCCCCCHH
T ss_conf             999999999758983886214677654111235330343102011132147-8323248888861899999872754223


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             27999999999998630257303899999999999999987981
Q gi|254780902|r  327 SIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFM  370 (412)
Q Consensus       327 P~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~  370 (412)
                      .++-.|+.+--|+|+++..++.+....|+.+..|+.+.|++++-
T Consensus       599 SLGEFlAL~~Sle~la~~~~n~ka~vLa~~Ld~A~~~~L~~~ks  642 (738)
T 2b0t_A          599 SLGEFLALAESFRHELNNNGNTKAGVLADALDKATEKLLNEEKS  642 (738)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             37779999987999986438858899999999999999856999


No 25 
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural genomics, PSI; 2.01A {Pseudomonas aeruginosa}
Probab=97.30  E-value=8.9e-05  Score=47.73  Aligned_cols=81  Identities=15%  Similarity=0.017  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf             36999999985496651-88632102326788887750753231243127987514421222203455655424877554
Q gi|254780902|r  247 RLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETST  325 (412)
Q Consensus       247 ~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~  325 (412)
                      .-.|.+..+-.  -.+| ++++  ||    -|++-.-.-.+++-.++|+.-.-.+----|-||||.|     |||||+| 
T Consensus       243 ~paDt~F~~~~--~~~~D~vva--mY----HDQglip~K~~~f~~~VnvtlGLp~irtS~dHGTa~d-----iag~~~A-  308 (328)
T 1yxo_A          243 LPADTLFTPKH--LEHCDAVLA--MY----HDQGLPVLKYKGFGAAVNVTLGLPIIRTSVDHGTALD-----LAGSGRI-  308 (328)
T ss_dssp             ECHHHHTSHHH--HTTCSEEEE--SS----HHHHHHHHHHHHTTSCEEEEESSSSCEEEECSCCCGG-----GTTTCCC-
T ss_pred             CCHHHHHHHHC--CCCCCEEEE--EC----CCCCCHHHHHCCCCCCEEEECCCCEEEECCCCCCHHH-----HCCCCCC-
T ss_conf             88378887500--578758997--02----1012314542156653799648996676799883365-----5078989-


Q ss_pred             CHHHHHHHHHHHHHHH
Q ss_conf             7279999999999986
Q gi|254780902|r  326 NSIASIFAWTRGLLHR  341 (412)
Q Consensus       326 NP~a~IlS~ammL~hl  341 (412)
                      ||.+|+-|.-+..+-.
T Consensus       309 ~~~s~~~Ai~~a~~~~  324 (328)
T 1yxo_A          309 DSGSLQVALETAYQMA  324 (328)
T ss_dssp             CCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
T ss_conf             9699999999999999


No 26 
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD- dependent, metal-binding, NAD, NADP, oxidoreductase, pyridoxine biosynthesis; HET: SUC; 1.70A {Yersinia pestis} PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=96.48  E-value=0.0021  Score=39.18  Aligned_cols=81  Identities=16%  Similarity=0.004  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf             36999999985496651-88632102326788887750753231243127987514421222203455655424877554
Q gi|254780902|r  247 RLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETST  325 (412)
Q Consensus       247 ~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~  325 (412)
                      .-.|.+..+-.+  .+| ++|+  ||    -|.+-.-.-.+++-.+.|+.-.=.+----|-||||-|     |||||+| 
T Consensus       248 ~paDt~F~~~~~--~~~D~vva--mY----HDQglip~K~l~f~~~VnvtlGLp~iRtSpdHGTA~d-----Iagkg~A-  313 (334)
T 3lxy_A          248 LPADTLFQPKYL--QHADAVLA--MY----HDQGLPVLKYQGFGRAVNITLGLPFIRTSVDHGTALE-----LAATGTA-  313 (334)
T ss_dssp             ECHHHHTSHHHH--TTCSEEEE--SS----HHHHHHHHHHHHTTCCEEEEESSSSCEEEESSCCCGG-----GTTTTCS-
T ss_pred             CCHHHHHHHHCC--CCCCEEEE--CC----CCCCCHHHHHCCCCCCEEEECCCCEEEECCCCCCHHH-----HHCCCCC-
T ss_conf             480788654001--57999997--76----4652043422157766799738995687899871666-----6178989-


Q ss_pred             CHHHHHHHHHHHHHHH
Q ss_conf             7279999999999986
Q gi|254780902|r  326 NSIASIFAWTRGLLHR  341 (412)
Q Consensus       326 NP~a~IlS~ammL~hl  341 (412)
                      ||.+|+-|.-+..+..
T Consensus       314 ~~~s~~~Ai~~a~~~~  329 (334)
T 3lxy_A          314 DVGSFITALNLAIKMI  329 (334)
T ss_dssp             CCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
T ss_conf             9799999999999999


No 27 
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural genomics, PSI-2; 2.30A {Salmonella typhimurium LT2}
Probab=96.20  E-value=0.0035  Score=37.80  Aligned_cols=80  Identities=20%  Similarity=0.129  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf             436999999985496651-8863210232678888775075323124312798751442122220345565542487755
Q gi|254780902|r  246 HRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETS  324 (412)
Q Consensus       246 ~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA  324 (412)
                      ..-.|.+..+-.  -++| ++++  ||    -|++-.-.-.+++--++|+.-.=.+----|-||||-|     |||||+|
T Consensus       248 P~paDt~F~~~~--~~~~D~vla--MY----HDQglip~K~l~f~~~Vn~TlGLp~iRtSpdHGTa~d-----iagk~~a  314 (330)
T 2hi1_A          248 PCPPDTVFLQAY--EGQYDMVVA--MY----HDQGHIPLKLLGFYDGVNITAGLPFIRTSADHGTAFD-----IAWTGKA  314 (330)
T ss_dssp             EECHHHHHHHHH--TTSCSEEEE--SS----HHHHHHHHHHCC-CCSEEEEETSSSEEEEESCCCCTT-----TTTTTCC
T ss_pred             CCCCHHHHHHHC--CCCCCEEEE--CC----CCCCHHHHHHCCCCCCEEEECCCCEEEECCCCCCHHH-----HHCCCCC
T ss_conf             988037888742--369999997--76----4641164653357877799669993577899871666-----6168989


Q ss_pred             CCHHHHHHHHHHHHH
Q ss_conf             472799999999999
Q gi|254780902|r  325 TNSIASIFAWTRGLL  339 (412)
Q Consensus       325 ~NP~a~IlS~ammL~  339 (412)
                       ||.+|+-|.-+..+
T Consensus       315 -~~~s~~~Ai~~a~~  328 (330)
T 2hi1_A          315 -KSESMAVSIKLAMQ  328 (330)
T ss_dssp             -CCHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHH
T ss_conf             -86999999999998


No 28 
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur subunit; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=62.12  E-value=2.2  Score=20.36  Aligned_cols=35  Identities=17%  Similarity=0.080  Sum_probs=23.1

Q ss_pred             CCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCH
Q ss_conf             323124312798751442122220345565542487755472
Q gi|254780902|r  286 LGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNS  327 (412)
Q Consensus       286 lGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~NP  327 (412)
                      ||-.|..+.+.+. ..+|-|+|||--|     ++|+-++ +|
T Consensus        86 lGC~~~~~~~~~~-~~f~CPCHgs~fD-----~~Grv~~-GP  120 (141)
T 2nwf_A           86 LGCVPIGGVSGDF-GGWFCPCHGSHWD-----SAGRIRK-GP  120 (141)
T ss_dssp             TCCCCEEEEETTT-TEEEETTTTEEEC-----TTSCEEE-SS
T ss_pred             CCCCCCCCCCCCC-CEEECCCCCCEEC-----CCCCEEC-CC
T ss_conf             7861335457752-4047168699898-----9998964-89


No 29 
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=54.53  E-value=3.2  Score=19.28  Aligned_cols=34  Identities=15%  Similarity=0.053  Sum_probs=21.5

Q ss_pred             CCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCH
Q ss_conf             323124312798751442122220345565542487755472
Q gi|254780902|r  286 LGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNS  327 (412)
Q Consensus       286 lGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~NP  327 (412)
                      ||-.|+.+-+..  ...|-|+|||--|     .+|+-++ .|
T Consensus        75 lGC~~~~~~~~~--~~f~CPCHgs~fd-----~~G~v~~-GP  108 (129)
T 1rie_A           75 LGCVPIANAGDF--GGYYCPCHGSHYD-----ASGRIRK-GP  108 (129)
T ss_dssp             TSCCCEETCTTT--EEEEETTTTEEEE-----TTCCEEE-SS
T ss_pred             CCEECCCCCCCC--CEEEEECCCCCCC-----CCCCEEC-CC
T ss_conf             630522335768--8588747688598-----9998942-89


No 30 
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=53.62  E-value=3.8  Score=18.82  Aligned_cols=34  Identities=18%  Similarity=0.062  Sum_probs=21.9

Q ss_pred             CCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCH
Q ss_conf             323124312798751442122220345565542487755472
Q gi|254780902|r  286 LGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNS  327 (412)
Q Consensus       286 lGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~NP  327 (412)
                      ||=.|+-+-+..+  ..|-|+|||.-|     .+|+.++ .|
T Consensus       132 LGC~v~~~~~~~~--~f~CPCHgs~fd-----~~G~v~~-GP  165 (185)
T 3cx5_E          132 LGCVPIGEAGDFG--GWFCPCHGSHYD-----ISGRIRK-GP  165 (185)
T ss_dssp             TSCCCEEEETTTT--EEEETTTTEEEC-----TTCCEEE-SS
T ss_pred             CCCCCCCCCCCCC--EEEECCCCCCCC-----CCCCEEC-CC
T ss_conf             7850565257788--247258787498-----9998804-99


No 31 
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome B; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 1bcc_E* 2bcc_E* 3bcc_E* ...
Probab=46.50  E-value=5.8  Score=17.68  Aligned_cols=33  Identities=18%  Similarity=0.111  Sum_probs=19.2

Q ss_pred             CCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCC
Q ss_conf             32312431279875144212222034556554248
Q gi|254780902|r  286 LGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQG  320 (412)
Q Consensus       286 lGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaG  320 (412)
                      ||-.|+.+-+..+  ..|-|+|||--|..|+.++|
T Consensus       142 lgC~~~~~~~~~~--~~~CpCHgs~fd~~G~~~~g  174 (196)
T 1pp9_E          142 LGCVPIANAGDFG--GYYCPCHGSHYDASGRIRKG  174 (196)
T ss_dssp             TSCCCEETCSTTS--SEEETTTTEEECTTCCEEES
T ss_pred             CCCCCCCCCCCCC--EEEECCCCCCCCCCCCEECC
T ss_conf             8635444667688--57716989859999999148


No 32 
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=36.80  E-value=17  Score=14.73  Aligned_cols=81  Identities=14%  Similarity=0.215  Sum_probs=45.4

Q ss_pred             CCCCEEEECCC----CCCHHHHHHHHHHHHCCCCCCEEEEEECCH---HHHHHHCCCCCH---HHHHHHHHCCEEEECCC
Q ss_conf             13867997598----630899999999984179984489982748---998652862778---99999986593887264
Q gi|254780902|r    6 VTKPVVSLDGD----EMTRIIWQLIQENLIHPYLDIKIEYFDLSI---QNRDLTDDQVTI---DAAHAIKNCGVGIKCAT   75 (412)
Q Consensus         6 m~~~Iv~l~GD----giG~Ei~~~~l~vl~~~~~~i~~e~~d~G~---~~~d~tg~~l~~---da~eaik~~~v~lkg~~   75 (412)
                      |.|+|++|-|-    +...-+.+.+.+.+..   +.+.+++++..   .+.+ .....++   +..+.++.+|+++++  
T Consensus         1 MskKIl~i~GS~R~~s~t~~la~~~~~~l~~---~~ev~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~l~~aD~iI~~--   74 (192)
T 3fvw_A            1 MSKRILFIVGSFSEGSFNRQLAKKAETIIGD---RAQVSYLSYDRVPFFNQD-LETSVHPEVAHAREEVQEADAIWIF--   74 (192)
T ss_dssp             --CEEEEEESCCSTTCHHHHHHHHHHHHHTT---SSEEEECCCSSCCCCCGG-GTTSCCHHHHHHHHHHHHCSEEEEE--
T ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHHCCC---CCEEEEEECCCCCCCCCC-CCCCCCHHHHHHHHHHHCCCCEEEE--
T ss_conf             9984999989999998799999999987579---977999867535668841-1237888999999999659958993--


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             48985443211244221104589897329
Q gi|254780902|r   76 ITADQARVKEFNLKKMWKSPNGTIRNILG  104 (412)
Q Consensus        76 ~tP~~~~~~~~~l~~~~~S~n~~LR~~ld  104 (412)
                       ||.|-           .+....|..-+|
T Consensus        75 -sP~Y~-----------~~~~~~lK~~iD   91 (192)
T 3fvw_A           75 -SPVYN-----------YAIPGPVKNLLD   91 (192)
T ss_dssp             -CCCBT-----------TBCCHHHHHHHH
T ss_pred             -CCHHC-----------CCCCHHHHHHHH
T ss_conf             -53123-----------457889999999


No 33 
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=32.23  E-value=20  Score=14.27  Aligned_cols=82  Identities=13%  Similarity=0.039  Sum_probs=45.8

Q ss_pred             CEEEECC----CC-CCHHHHHHHHHHHHCCCCCCEEEEEECCHHHH-----------HHHCCCCC----------HHHHH
Q ss_conf             6799759----86-30899999999984179984489982748998-----------65286277----------89999
Q gi|254780902|r    9 PVVSLDG----DE-MTRIIWQLIQENLIHPYLDIKIEYFDLSIQNR-----------DLTDDQVT----------IDAAH   62 (412)
Q Consensus         9 ~Iv~l~G----Dg-iG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~-----------d~tg~~l~----------~da~e   62 (412)
                      +|++|.|    ++ ...-+.+..++.+.+.+.+.+.+..|+.....           ........          ++-++
T Consensus         3 kiL~i~gS~r~~~S~s~~L~~~f~~~~~~~~~~~eV~~~DL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (201)
T 1t5b_A            3 KVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELIA   82 (201)
T ss_dssp             EEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             28999778999868999999999999997598998999889889998779899841068743257788889999999999


Q ss_pred             HHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             998659388726448985443211244221104589897329
Q gi|254780902|r   63 AIKNCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILG  104 (412)
Q Consensus        63 aik~~~v~lkg~~~tP~~~~~~~~~l~~~~~S~n~~LR~~ld  104 (412)
                      .++.+|+++++   +|-|           |-+....|..-+|
T Consensus        83 ~i~~AD~iV~~---~P~y-----------~~~~pa~lK~~iD  110 (201)
T 1t5b_A           83 ELKAHDVIVIA---APMY-----------NFNIPTQLKNYFD  110 (201)
T ss_dssp             HHHHCSEEEEE---CCCB-----------TTBCCHHHHHHHH
T ss_pred             HHHHCCEEEEE---CCCC-----------CCCCCHHHHHHHH
T ss_conf             99858908997---3761-----------5657899999999


No 34 
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.97A {Archaeoglobus fulgidus}
Probab=31.66  E-value=21  Score=14.21  Aligned_cols=25  Identities=28%  Similarity=0.383  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             4688999999999986599899997
Q gi|254780902|r  185 DSIRNFARAAMQYALARQLPLYLST  209 (412)
Q Consensus       185 ~~i~Riar~AF~~A~~~~~kvt~v~  209 (412)
                      +.++|..++|.+.|+.++.+++.+|
T Consensus        36 ~~s~~al~~A~~~A~~~~~~l~lvh   60 (155)
T 3dlo_A           36 DRAERVLRFAAEEARLRGVPVYVVH   60 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             8999999999999998399699999


No 35 
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=27.93  E-value=7.7  Score=16.90  Aligned_cols=67  Identities=13%  Similarity=0.159  Sum_probs=41.3

Q ss_pred             CCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCE-EEEEECC-----HHHHHHHC-CCCCHHHHHHHHHCC
Q ss_conf             7401138679975986308999999999841799844-8998274-----89986528-627789999998659
Q gi|254780902|r    2 KKIKVTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIK-IEYFDLS-----IQNRDLTD-DQVTIDAAHAIKNCG   68 (412)
Q Consensus         2 ~Kikm~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~-~e~~d~G-----~~~~d~tg-~~l~~da~eaik~~~   68 (412)
                      +|++|.+++++|.=|++-+-...++++.+...++.|. ....-+.     ...|..+. .+.-++-++-+...-
T Consensus         2 ~~~~~E~Tl~iIKPDav~~~~~geIi~~i~~~Gf~Iv~~k~~~~~~~~~a~~~y~~~~~k~ff~~lv~~mtSGP   75 (146)
T 3evo_A            2 KKAGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGP   75 (146)
T ss_dssp             ----CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTGGGTTSTTHHHHHHHHTSSC
T ss_pred             CCCCHHHHEEEECHHHHHCCCHHHHHHHHHHCCCEEEEEEEEHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCC
T ss_conf             85673040457891354136799999999986998986520001529899999999712841888998735798


No 36 
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=27.36  E-value=14  Score=15.23  Aligned_cols=36  Identities=14%  Similarity=0.024  Sum_probs=26.6

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             138679975986308999999999841799844899
Q gi|254780902|r    6 VTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEY   41 (412)
Q Consensus         6 m~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~   41 (412)
                      |.|+|++|--||.-..=.-..+++|...++++++..
T Consensus         1 M~KkVavl~~~~~~~~e~~~~~~~f~~~g~~~~v~s   36 (175)
T 3cne_A            1 MAKKVAVLAVNPVNGCGLFQYLEAFFENGISYKVFA   36 (175)
T ss_dssp             -CCEEEEEECSSBCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEEECCCCEEHHHHHHHHHHHHCCCEEEEEE
T ss_conf             996799994899484689999999997899299999


No 37 
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=26.61  E-value=25  Score=13.67  Aligned_cols=67  Identities=9%  Similarity=-0.126  Sum_probs=31.9

Q ss_pred             CCCEEEECC-CCCCHHHHHHHHHHHHCCCCCCEEEEE---ECC----HHHHHHHCCCCCHHHHHHHHHCCEEEECC
Q ss_conf             386799759-863089999999998417998448998---274----89986528627789999998659388726
Q gi|254780902|r    7 TKPVVSLDG-DEMTRIIWQLIQENLIHPYLDIKIEYF---DLS----IQNRDLTDDQVTIDAAHAIKNCGVGIKCA   74 (412)
Q Consensus         7 ~~~Iv~l~G-DgiG~Ei~~~~l~vl~~~~~~i~~e~~---d~G----~~~~d~tg~~l~~da~eaik~~~v~lkg~   74 (412)
                      +++|+++-+ -|-+..+.+++.+-+.+.+.+++....   +++    ..+....++ -++...+.++++|++++|.
T Consensus         4 ~~kvliiy~S~GnT~~la~ai~~Ga~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~i~~AD~IilgS   78 (199)
T 2zki_A            4 KPNILVLFYGYGSIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKD-IPEVTLDDMRWADGFAIGS   78 (199)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTT-SCBCCHHHHHHCSEEEEEE
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCC-CCCCCHHHHHHCCEEEEEC
T ss_conf             98699998183589999999999887649889999766667088886336553478-5306799998589789965


No 38 
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=26.28  E-value=26  Score=13.63  Aligned_cols=36  Identities=17%  Similarity=0.182  Sum_probs=23.7

Q ss_pred             CCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             740113867997598630899999999984179984
Q gi|254780902|r    2 KKIKVTKPVVSLDGDEMTRIIWQLIQENLIHPYLDI   37 (412)
Q Consensus         2 ~Kikm~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i   37 (412)
                      ++..|+|+|.+|-.||.-..=.-...++|...+.++
T Consensus        18 ~~~~M~kkVaill~dgf~~~E~~~p~~~l~~aG~~v   53 (193)
T 1oi4_A           18 KKAGLSKKIAVLITDEFEDSEFTSPADEFRKAGHEV   53 (193)
T ss_dssp             TTTTCCCEEEEECCTTBCTHHHHHHHHHHHHTTCEE
T ss_pred             HHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEE
T ss_conf             640898779999579762999999999999689989


No 39 
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=23.55  E-value=29  Score=13.31  Aligned_cols=21  Identities=29%  Similarity=0.091  Sum_probs=12.7

Q ss_pred             CCCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf             2102326788887750753231243
Q gi|254780902|r  268 KNYDGDVQSDIVAQGFGSLGLMTSV  292 (412)
Q Consensus       268 ~NL~GDIlSD~aa~l~GglGlapSa  292 (412)
                      +|..+|+++    ++.||.|-+|+.
T Consensus       301 ~n~L~~mmg----~lF~~~~~~~~~  321 (336)
T 3lpz_A          301 SNPLLDMMG----SLFGGGGGAPSK  321 (336)
T ss_dssp             CCHHHHHHH----HHHCCCC-----
T ss_pred             CCCHHHHHH----HHCCCCCCCCCC
T ss_conf             980778988----741565457887


No 40 
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=21.51  E-value=32  Score=13.06  Aligned_cols=37  Identities=22%  Similarity=0.129  Sum_probs=22.3

Q ss_pred             CCCCCCCCCEEEECC----CCCCHHHHHHH--HHHHHCCCCCCEE
Q ss_conf             974011386799759----86308999999--9998417998448
Q gi|254780902|r    1 MKKIKVTKPVVSLDG----DEMTRIIWQLI--QENLIHPYLDIKI   39 (412)
Q Consensus         1 m~Kikm~~~Iv~l~G----DgiG~Ei~~~~--l~vl~~~~~~i~~   39 (412)
                      |+.+.|+|-.++|.|    ||.  |..+.+  ++.|...++++++
T Consensus         1 m~~~~MKKvaviLsg~g~~DG~--E~~E~~~p~~~L~raG~~V~~   43 (232)
T 1vhq_A            1 MSLITMKKIGVILSGCGVYDGS--EIHEAVLTLLAISRSGAQAVC   43 (232)
T ss_dssp             -----CCEEEEECCSBSTTTSB--CHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCCEEEEEECCCCCCCCH--HHHHHHHHHHHHHHCCCEEEE
T ss_conf             9765667599996688787750--298999999999988997999


No 41 
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur subunit; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix rieske; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E*
Probab=20.68  E-value=28  Score=13.42  Aligned_cols=34  Identities=15%  Similarity=0.030  Sum_probs=20.0

Q ss_pred             CCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCH
Q ss_conf             23124312798751442122220345565542487755472
Q gi|254780902|r  287 GLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNS  327 (412)
Q Consensus       287 GlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~NP  327 (412)
                      |=.++.+.+.+. ..++=|+|||.-|     ..|+.++ .|
T Consensus       133 GC~v~~~~~~~~-~~~~CPCHgS~Fd-----~~G~vv~-GP  166 (187)
T 2qjy_C          133 GCSPIGGVSGDF-GGWFCPCHGSHYD-----SAGRIRK-GP  166 (187)
T ss_dssp             SCCCEEEEETTT-TEEEETTTTEEEC-----TTSCEEE-SS
T ss_pred             CCCCCCCCCCCC-CEEECCCCCCEEC-----CCCCEEC-CC
T ss_conf             971535357888-9687479999899-----9998835-99


No 42 
>3keg_A FMN-dependent NADH-azoreductase 1; Y131F azoreductase, methyl RED, flavoprotein, oxidoreductase; HET: FMN MRE GOL; 2.10A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A*
Probab=20.64  E-value=33  Score=12.94  Aligned_cols=37  Identities=5%  Similarity=0.187  Sum_probs=25.2

Q ss_pred             CEEEE----CCCC-CCHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf             67997----5986-3089999999998417998448998274
Q gi|254780902|r    9 PVVSL----DGDE-MTRIIWQLIQENLIHPYLDIKIEYFDLS   45 (412)
Q Consensus         9 ~Iv~l----~GDg-iG~Ei~~~~l~vl~~~~~~i~~e~~d~G   45 (412)
                      +|++|    .+++ ...-+.+.+++-+.+.+-+.+.+..|+.
T Consensus         3 kILvI~gspr~~~S~s~~l~~~~~~~~~~~~~~~ev~~~dL~   44 (212)
T 3keg_A            3 RILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVG   44 (212)
T ss_dssp             EEEEEECCSCSTTCHHHHHHHHHHHHHHHHSTTCEEEEEESS
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             599998389988778999999999999961999889999874


Done!