Query gi|254780902|ref|YP_003065315.1| isocitrate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 412 No_of_seqs 143 out of 1910 Neff 5.8 Searched_HMMs 23785 Date Tue May 31 22:06:22 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780902.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2qfy_A Isocitrate dehydrogenas 100.0 0 0 850.7 36.7 403 1-404 16-425 (427) 2 1lwd_A Isocitrate dehydrogenas 100.0 0 0 848.3 36.8 403 2-405 3-413 (413) 3 2uxq_A Isocitrate dehydrogenas 100.0 0 0 835.4 35.5 399 3-403 2-402 (402) 4 1zor_A Isocitrate dehydrogenas 100.0 0 0 783.6 34.2 396 1-402 1-399 (399) 5 1hqs_A Isocitrate dehydrogenas 100.0 0 0 754.6 26.2 366 8-399 20-423 (423) 6 2d1c_A Isocitrate dehydrogenas 100.0 0 0 743.5 31.0 338 7-404 19-361 (496) 7 1x0l_A Homoisocitrate dehydrog 100.0 0 0 728.0 34.3 329 8-400 2-332 (333) 8 2d4v_A Isocitrate dehydrogenas 100.0 0 0 733.2 27.6 361 9-397 28-428 (429) 9 2iv0_A Isocitrate dehydrogenas 100.0 0 0 726.2 33.4 361 9-400 29-411 (412) 10 2e0c_A 409AA long hypothetical 100.0 0 0 730.3 28.4 361 9-400 26-408 (409) 11 1cnz_A IPMDH, IMDH, protein (3 100.0 0 0 726.8 29.4 350 1-402 1-363 (363) 12 1v53_A 3-isopropylmalate dehyd 100.0 0 0 724.2 29.2 351 6-406 1-363 (366) 13 3dms_A Isocitrate dehydrogenas 100.0 0 0 727.2 25.7 364 8-399 37-427 (427) 14 1tyo_A Isocitrate dehydrogenas 100.0 0 0 721.1 28.9 364 8-401 36-424 (435) 15 3flk_A Tartrate dehydrogenase/ 100.0 0 0 716.0 32.3 346 7-400 5-362 (364) 16 1vlc_A 3-isopropylmalate dehyd 100.0 0 0 715.7 30.5 345 3-401 5-365 (366) 17 1a05_A IPMDH, IMDH, 3-isopropy 100.0 0 0 715.8 28.5 343 9-400 3-356 (358) 18 1wpw_A 3-isopropylmalate dehyd 100.0 0 0 704.2 33.6 327 8-398 2-335 (336) 19 1w0d_A 3-isopropylmalate dehyd 100.0 0 0 706.9 31.2 331 9-398 3-337 (337) 20 1g2u_A IPMDH, 3-isopropylmalat 100.0 0 0 694.6 31.3 331 9-398 2-344 (345) 21 3blx_B Isocitrate dehydrogenas 100.0 0 0 683.4 25.8 325 8-398 22-354 (354) 22 3blx_A Isocitrate dehydrogenas 100.0 0 0 674.6 28.2 327 7-400 17-348 (349) 23 1itw_A Isocitrate dehydrogenas 99.8 3.2E-17 1.4E-21 125.5 26.0 310 32-370 324-646 (741) 24 2b0t_A NADP isocitrate dehydro 99.5 5.5E-11 2.3E-15 86.5 26.4 321 20-370 309-642 (738) 25 1yxo_A 4-hydroxythreonine-4-ph 97.3 8.9E-05 3.8E-09 47.7 2.5 81 247-341 243-324 (328) 26 3lxy_A 4-hydroxythreonine-4-ph 96.5 0.0021 8.8E-08 39.2 3.9 81 247-341 248-329 (334) 27 2hi1_A 4-hydroxythreonine-4-ph 96.2 0.0035 1.5E-07 37.8 3.8 80 246-339 248-328 (330) 28 2nwf_A Ubiquinol-cytochrome C 62.1 2.2 9.1E-05 20.4 1.1 35 286-327 86-120 (141) 29 1rie_A Rieske iron-sulfur prot 54.5 3.2 0.00013 19.3 0.9 34 286-327 75-108 (129) 30 3cx5_E Cytochrome B-C1 complex 53.6 3.8 0.00016 18.8 1.2 34 286-327 132-165 (185) 31 1pp9_E Ubiquinol-cytochrome C 46.5 5.8 0.00024 17.7 1.2 33 286-320 142-174 (196) 32 3fvw_A Putative NAD(P)H-depend 36.8 17 0.00072 14.7 5.0 81 6-104 1-91 (192) 33 1t5b_A Acyl carrier protein ph 32.2 20 0.00085 14.3 3.4 82 9-104 3-110 (201) 34 3dlo_A Universal stress protei 31.7 21 0.00087 14.2 3.9 25 185-209 36-60 (155) 35 3evo_A NDP kinase, NDK, nucleo 27.9 7.7 0.00032 16.9 -0.6 67 2-68 2-75 (146) 36 3cne_A Putative protease I; st 27.4 14 0.0006 15.2 0.7 36 6-41 1-36 (175) 37 2zki_A 199AA long hypothetical 26.6 25 0.0011 13.7 2.9 67 7-74 4-78 (199) 38 1oi4_A Hypothetical protein YH 26.3 26 0.0011 13.6 4.1 36 2-37 18-53 (193) 39 3lpz_A GET4 (YOR164C homolog); 23.6 29 0.0012 13.3 2.6 21 268-292 301-321 (336) 40 1vhq_A Enhancing lycopene bios 21.5 32 0.0013 13.1 3.2 37 1-39 1-43 (232) 41 2qjy_C Ubiquinol-cytochrome C 20.7 28 0.0012 13.4 1.1 34 287-327 133-166 (187) 42 3keg_A FMN-dependent NADH-azor 20.6 33 0.0014 12.9 3.5 37 9-45 3-44 (212) No 1 >2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Probab=100.00 E-value=0 Score=850.73 Aligned_cols=403 Identities=61% Similarity=1.017 Sum_probs=386.8 Q ss_pred CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCC Q ss_conf 97401138679975986308999999999841799844899827489986528627789999998659388726448985 Q gi|254780902|r 1 MKKIKVTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQ 80 (412) Q Consensus 1 m~Kikm~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~ 80 (412) |+||||++|||+|+||||+++||+.++++|+.+++||+|++||+|+++||+||+++|+|+++++|+++|+||||++||+| T Consensus 16 ~~KIkv~~piV~l~GDEmtriiw~~Ik~kli~p~ldi~~~~~DlG~e~rd~tgd~l~~ea~eaik~~~v~lKga~~TP~~ 95 (427) T 2qfy_A 16 FSKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITPDE 95 (427) T ss_dssp CCCEECSSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH T ss_pred HHHEECCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHCCEEEECCCCCCCC T ss_conf 33233368769844707999999999999735787633899706588998649977099999999769899898068872 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCC Q ss_conf 44321124422110458989732966883058804878778887786799850566630010147778845999995488 Q gi|254780902|r 81 ARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDD 160 (412) Q Consensus 81 ~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~~~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~ 160 (412) +++++.+++++|+|||++||+.||+|+|+||+.|+++|+++++|++||||+||||||+|+|+||.+..++..++++++++ T Consensus 96 ~~v~~~~~~~~~~S~N~~lR~~ldl~~~~rPi~~~~i~~~~~~~~~divI~Rented~Y~g~e~~~~~~~~~~~~~~~~~ 175 (427) T 2qfy_A 96 ARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSD 175 (427) T ss_dssp HHHHHTTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCEEEEEEEECSSGGGGCEEEEECSSEEEEEEEEESC T ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEECCEEEECCCCCEEEEEEECC T ss_conf 22342355412267758999765875054201544887665688888799710467758642267469972699998435 Q ss_pred CC---CEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 86---102554124665301011105146889999999999865998999974267775108999999999863100245 Q gi|254780902|r 161 GQ---TIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQF 237 (412) Q Consensus 161 g~---~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~ 237 (412) +. .....+++..+..+.+.+++++++|+|++|+||+||++++++||++||+||||.|||+|++|++||+++||+.++ T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~r~a~~af~~A~~~~~~vt~v~K~nI~k~~dg~F~~~~~ev~~~~~~~~~ 255 (427) T 2qfy_A 176 PTTAQPQTLKVYDYKGSGVAMAMYNTDESIEGFAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKF 255 (427) T ss_dssp TTTSCCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHH T ss_pred CCCCCCEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCHHHHC T ss_conf 66663136787723787411330243899999999999999848963999975405666668999999999985602203 Q ss_pred CCCCEEHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHH Q ss_conf 42320002436999999985496651886321023267888877507532312431279875144212222034556554 Q gi|254780902|r 238 DELGITYTHRLIDDMVASSIKWSGGYIWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQH 317 (412) Q Consensus 238 ~~~~i~~~~~~vD~~~~~lv~~P~~fVivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~ 317 (412) ++++|+++|+++|+|+|||+++|++|||||+|||||||||++|+++|||||+||+|+|+++.+++|||+|||||+|+.++ T Consensus 256 ~~~~I~~~~~~iD~~~~~lv~~~~~fviv~~Nl~GDIlSD~~a~~~GslGl~pS~ni~~~~~~~e~Ea~Hgtap~h~~a~ 335 (427) T 2qfy_A 256 EQLGIHYEHRLIDDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEAAHGTVTRHYRKY 335 (427) T ss_dssp HHHTCCEEEEEHHHHHHHHHHSCEEEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSCCEEEECCSCCCHHHHHHH T ss_pred CCCCEEEEECCCHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHH T ss_conf 45736874032145544104798763899614421588889887438855221011168877503415311642125333 Q ss_pred -HCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHCCCCC--CCCEEHHHHHHH Q ss_conf -24877554727999999999998630257303899999999999999987-98163230015788--871309999999 Q gi|254780902|r 318 -QQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVED-GFMTKDLALLIGPE--QDWLSTTDFIEK 393 (412) Q Consensus 318 -iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~-G~~T~DLg~~~~~~--~~~~~T~ef~da 393 (412) ++||++| ||+|+|||++|||+|+|++|++++|.++|++|++||.+|+++ |++|+|||+..++. ...+||+||+|| T Consensus 336 ~~ag~~~a-NP~a~Ils~~mmL~h~g~~d~~~~l~~~A~~ie~Av~~ti~~~g~~T~DL~g~~~~~~~~~~~~T~ef~da 414 (427) T 2qfy_A 336 QKGEETST-NSIASIFAWSRGLLKRGELDNTPALCKFANILESATLNTVQQDGIMTKDLALACGNNERSAYVTTEEFLDA 414 (427) T ss_dssp HTTCCCCC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHTTCCSGGGCCCHHHHHHH T ss_pred HHCCCCCC-CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 41587766-86999999999999752514443699999999999999998589858011766677667874179999999 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999987 Q gi|254780902|r 394 ISDNLRDALQK 404 (412) Q Consensus 394 I~~~l~~~l~~ 404 (412) |++||+++|++ T Consensus 415 I~~~L~~~l~~ 425 (427) T 2qfy_A 415 VEKRLQKEIKS 425 (427) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHC T ss_conf 99999988750 No 2 >1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3inm_A* 2cmj_A* 2cmv_A* Probab=100.00 E-value=0 Score=848.31 Aligned_cols=403 Identities=62% Similarity=1.063 Sum_probs=382.9 Q ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCC Q ss_conf 74011386799759863089999999998417998448998274899865286277899999986593887264489854 Q gi|254780902|r 2 KKIKVTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQA 81 (412) Q Consensus 2 ~Kikm~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~ 81 (412) +||||+||||+|+|||||||||+.++++|+.+++||+|++||+|+++|++||+++|+|+++++|+++++||||++||+|+ T Consensus 3 ~ki~v~~piv~l~GDe~~~~i~~~i~~~~~~~~~di~~~~~d~g~~~~~~tg~~lp~e~lea~k~~~a~LkGav~tP~~~ 82 (413) T 1lwd_A 3 QRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEA 82 (413) T ss_dssp CCEECSSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHH T ss_pred CCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCHH T ss_conf 65214777699559636899999999986067877438996566789987499787999999997496898871689734 Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCC Q ss_conf 43211244221104589897329668830588048787788877867998505666300101477788459999954888 Q gi|254780902|r 82 RVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDG 161 (412) Q Consensus 82 ~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~~~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~g 161 (412) +..+..++++++|+|++||+.||||+|+||+.+.+.++...++++|+||+||||||+|+|+||.+.++++..++++.+.| T Consensus 83 ~~~~~~~~~~~~s~n~~lR~~ldlyaniRP~~~~~~~~~~~~~~~d~vivREntEg~Y~g~e~~~~~~~~~~~~~~~~~g 162 (413) T 1lwd_A 83 RVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDG 162 (413) T ss_dssp HHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTC T ss_pred HCCCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCEEEEEEEEEEECCCCEEEEEEECCCC T ss_conf 22444555332250178998648743775000478887668887666870466306984003684688616899962577 Q ss_pred CC-EEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 61-02554124665301011105146889999999999865998999974267775108999999999863100245423 Q gi|254780902|r 162 QT-IEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDEL 240 (412) Q Consensus 162 ~~-~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~ 240 (412) .. .....+......++.++++++.+++||+|+||++|+.|+++||++||+|||+.|||+|+++++|++++||+.++.+. T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~ri~r~af~~A~~~r~kvt~v~KaNv~~~~dglf~~~~~eva~~~~~~~~~~~ 242 (413) T 1lwd_A 163 SSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKY 242 (413) T ss_dssp CCCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHT T ss_pred CCEEEEEEEECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEE T ss_conf 51121133202677413545640038899999999999855974478860563231334899999999987300134304 Q ss_pred CEEHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHH-HHC Q ss_conf 2000243699999998549665188632102326788887750753231243127987514421222203455655-424 Q gi|254780902|r 241 GITYTHRLIDDMVASSIKWSGGYIWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQ-HQQ 319 (412) Q Consensus 241 ~i~~~~~~vD~~~~~lv~~P~~fVivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~-~ia 319 (412) +|+++++++|+++|+++++|++|||||+|||||||||++|+++|||||+||+|+|+++..++|||+|||||||+|| +|+ T Consensus 243 ~I~~~~~~~d~~~~~lv~~~~~dVivt~NlfGDILSDlaa~l~GslGl~pSanig~~~~~~~~E~~hgsap~~~ga~dia 322 (413) T 1lwd_A 243 KIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREHQKG 322 (413) T ss_dssp TCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHHHHTT T ss_pred EEEEEHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCHHHCCCHHHHC T ss_conf 89962456788878741798771999745212577767787538855455431279987225515768624204245406 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC------CCCCCCEEHHHHHHH Q ss_conf 87755472799999999999863025730389999999999999998798163230015------788871309999999 Q gi|254780902|r 320 GKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLI------GPEQDWLSTTDFIEK 393 (412) Q Consensus 320 Gk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~------~~~~~~~~T~ef~da 393 (412) |||+| ||+|||||++|||+|+|+.|.++++.++|++|++||.+|+++|++|+|||+.. .+....+||+||+|| T Consensus 323 gk~iA-NP~A~IlS~amML~~lg~~~~~~~l~~aA~~Ie~Av~~~l~~G~~T~DlgG~~~~~~~~~~~~~~~tT~ef~da 401 (413) T 1lwd_A 323 RPTST-NPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDT 401 (413) T ss_dssp CCCCC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHCTTSCCBTTTBCCHHHHHHH T ss_pred CCCCC-CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 87632-87999999999999734655545799999999999999996799884658876666555556676289999999 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999873 Q gi|254780902|r 394 ISDNLRDALQKN 405 (412) Q Consensus 394 I~~~l~~~l~~~ 405 (412) |++||+++|+++ T Consensus 402 V~~~L~~~L~~~ 413 (413) T 1lwd_A 402 IKSNLDRALGRQ 413 (413) T ss_dssp HHHHHHHHHHTC T ss_pred HHHHHHHHHCCC T ss_conf 999999987439 No 3 >2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Probab=100.00 E-value=0 Score=835.38 Aligned_cols=399 Identities=46% Similarity=0.822 Sum_probs=381.5 Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCC Q ss_conf 40113867997598630899999999984179984489982748998652862778999999865938872644898544 Q gi|254780902|r 3 KIKVTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQAR 82 (412) Q Consensus 3 Kikm~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~ 82 (412) ||||++|||+|+|||||||+|++++++|+.+++||+|++||+|+++|++||+++|+|+++++|+++++||||++||+|.+ T Consensus 2 ki~~~~piv~l~GDei~~~~~~~i~~~~~~~~~die~~~~d~G~e~~~~tg~~lp~e~leaik~~daiLkGav~tP~~~~ 81 (402) T 2uxq_A 2 KIQMKTPLVELDGDEMTRVLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDR 81 (402) T ss_dssp CBCCSSCEEEEECCHHHHHHHHHHHHHHTTTTBCCCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHH T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCC T ss_conf 52345776995085079999999999984568874389982678999974997779999999976999988835988554 Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCCC Q ss_conf 32112442211045898973296688305880487877888778679985056663001014777884599999548886 Q gi|254780902|r 83 VKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQ 162 (412) Q Consensus 83 ~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~~~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~g~ 162 (412) ..+...+++++|+|++||+.||+|+|+||+.+.+.++...++.+|+||+||||||+|+|+|+.+..++..+++++...|. T Consensus 82 ~~~~~~~~~~~s~n~~lR~~l~l~~~~rp~~~~~~~~~~~~~~~DivivREnteg~Y~g~e~~~~~~~~~~~~~~~~~~~ 161 (402) T 2uxq_A 82 VEEYGLKEQWKSPNATVRAMLDGTVFRKPIMVKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVVTDKNGK 161 (402) T ss_dssp HHHHTCSSCCCCHHHHHHHHHCCEEEEEECCCTTCCCSBTTCCSCCEEEEECSCGGGGCEEEEETTCEEEEEEEECTTSC T ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCEECCCCCEEEEEEECCCCC T ss_conf 44334533324730899985887614453002588887678888658863055443755520217887037999526775 Q ss_pred CEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE Q ss_conf 10255412466530101110514688999999999986599899997426777510899999999986310024542320 Q gi|254780902|r 163 TIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGI 242 (412) Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i 242 (412) ..+..........+..++++++..++|++++||++|++++++||++||+||||.|+|+|++++++++++||+.++.+++| T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~kkvt~v~KaNvlk~tdglf~~~~~eva~~~~~~~~~~~~i 241 (402) T 2uxq_A 162 ETRQTIMEVDEPAIVQGIHNTVASIGHFARACFEYSLDQKIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAAGI 241 (402) T ss_dssp EEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHHTC T ss_pred CCEEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE T ss_conf 31123320357547888887356799999999999974697599985330377768999999999998875214334523 Q ss_pred EHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHH-CCC Q ss_conf 0024369999999854966518863210232678888775075323124312798751442122220345565542-487 Q gi|254780902|r 243 TYTHRLIDDMVASSIKWSGGYIWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQ-QGK 321 (412) Q Consensus 243 ~~~~~~vD~~~~~lv~~P~~fVivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~i-aGk 321 (412) +++|+++|++||||+++|++|||||+|||||||||++|+++||||++||+|+|+++ ++||||+||||||++|+++ +|| T Consensus 242 ~~~~~~vD~~~~~lv~~P~~fViv~~Nl~GDILSD~aa~l~GglGl~pSanig~~~-~~~fEp~HGSAPdiaG~~~~~~k 320 (402) T 2uxq_A 242 EYFYTLIDDVVARMMKTEGGMLWACKNYDGDVMSDMVASAFGSLAMMSSVLVSPYG-YFEYEAAHGTVQRHYYQHLKGER 320 (402) T ss_dssp CEEEEEHHHHHHHHTTCCCCSEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTS-CEEEECCSCCCHHHHHHHHTTCC T ss_pred EEHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCHHCCCCC-CEEEECCCCCHHHCCCHHHCCCC T ss_conf 41056678887641368986699963642027777678752887776510137865-22431246732200213331885 Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC-CCCCCEEHHHHHHHHHHHHHH Q ss_conf 7554727999999999998630257303899999999999999987981632300157-888713099999999999999 Q gi|254780902|r 322 ETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIG-PEQDWLSTTDFIEKISDNLRD 400 (412) Q Consensus 322 ~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~-~~~~~~~T~ef~daI~~~l~~ 400 (412) |+| ||+|||||++|||+|+|+.|.++++.++|++|++||.+|+++|++|+|||+... ++...+||+||+|||+++|++ T Consensus 321 ~ia-NP~a~ils~ammL~hlG~~e~~~~l~~~A~~i~~Av~~~l~~G~~T~DLGG~a~~~~~~~~tT~ef~daI~~~l~~ 399 (402) T 2uxq_A 321 TST-NPVALIYAWTGALRKRGELDGTPDLCAFCDSLEAITIECIESGYMTGDLARICEPAAIKVLDSIEFIDELGKRLQQ 399 (402) T ss_dssp CCC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTEECHHHHTTCSSCCSEECCHHHHHHHHHHHHHH T ss_pred CCC-CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 523-9499999999999974553444579999999999999999779978253766677888764899999999999998 Q ss_pred HHH Q ss_conf 998 Q gi|254780902|r 401 ALQ 403 (412) Q Consensus 401 ~l~ 403 (412) .|+ T Consensus 400 l~~ 402 (402) T 2uxq_A 400 LNK 402 (402) T ss_dssp TTC T ss_pred HHC T ss_conf 609 No 4 >1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima MSB8} Probab=100.00 E-value=0 Score=783.61 Aligned_cols=396 Identities=49% Similarity=0.858 Sum_probs=358.3 Q ss_pred CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCC Q ss_conf 97401138679975986308999999999841799844899827489986528627789999998659388726448985 Q gi|254780902|r 1 MKKIKVTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQ 80 (412) Q Consensus 1 m~Kikm~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~ 80 (412) |.||||++|||+||||||||++++.++++|..+++||+|++||+|+++|++||+++|+|++++|++++++||||++||.| T Consensus 1 m~ki~v~~~iv~l~GDei~~~~~~~ik~~l~~~~~di~~~~~d~G~~~~~~tg~~lp~e~le~ik~~dailkGa~g~P~~ 80 (399) T 1zor_A 1 MEKVKVKNPIVELDGDEMARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEAAKAIKKYGVGVKCATITPDA 80 (399) T ss_dssp CCCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH T ss_pred CCCEECCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCC T ss_conf 99502379869836841799999999998716798725999737889999758998899999998779699856158863 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCC Q ss_conf 44321124422110458989732966883058804878778887786799850566630010147778845999995488 Q gi|254780902|r 81 ARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDD 160 (412) Q Consensus 81 ~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~~~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~ 160 (412) .++++...+.+++|+|++||+.||+|+|+||+.+.+.++...+++.|++|+||||||+|+|+++.+.+++..+++++... T Consensus 81 ~~~~~~~~~~~~~s~n~~lR~~ldl~an~RP~~~~~~~~~~~~~~~d~vi~Re~te~~Y~g~~~~~~~~~~~~~~~~~~~ 160 (399) T 1zor_A 81 ERVKEYNLKKAWKSPNATIRAYLDGTVFRKPIMVKNVPPLVKRWKKPIIIGRHAYGDIYNAVEAKVEGPAEVELVVRNKE 160 (399) T ss_dssp HHHHHHTCSSCCCCHHHHHHHHHTCEEEEEECCBTTBCCSBTTCCSCCEEEECCSSGGGGCEEEEECSSEEEEEEEESSS T ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEECCCCEEEEEEECCC T ss_conf 34564455312237317889647942796225046887677788776488641221588400245079871899995367 Q ss_pred CCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 86102554124665301011105146889999999999865998999974267775108999999999863100245423 Q gi|254780902|r 161 GQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDEL 240 (412) Q Consensus 161 g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~ 240 (412) +.. ...+......+...+++++..+||++++||++|++++++||++||+|||+.++|+|++++++++++||.. +... T Consensus 161 ~~~--~~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~a~~~~~~vt~v~K~Nvl~~~~g~f~~~~~eva~~~~~~-~~~~ 237 (399) T 1zor_A 161 NKT--LLVHKFEGNGVVMAMHNLEKSIRSFAQSCINYAISEKVDIWFATKDTISKVYHAYFKDIFQEEVDKRKEE-LEKA 237 (399) T ss_dssp CEE--EEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTCTTHHHHHHHHHHHHHHHTHHH-HHHT T ss_pred CCC--CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHC-CCCC T ss_conf 741--0134567865677502334689999999999886158457873156520346789999999988653110-1344 Q ss_pred CEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHH- Q ss_conf 20002436999999985496651-8863210232678888775075323124312798751442122220345565542- Q gi|254780902|r 241 GITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQ- 318 (412) Q Consensus 241 ~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~i- 318 (412) .+++ ++++|+++|+++++|++| ||||+|||||||||++|+++|||||+||+|+|+++ .+||||+|||||||+||++ T Consensus 238 ~~~~-~~~~~~~~~~~~~~p~~~dVivt~NlfGDIlSDlaa~l~GglGl~psanig~~~-~~~fEp~HGSaPdiag~~~~ 315 (399) T 1zor_A 238 GVNY-RYMLIDDAAAQILRSEGGMLWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDG-VYEFEAAHGTVRRHYYRYLK 315 (399) T ss_dssp TCCE-EEEEHHHHHHHHHHSCCCSEEEECHHHHHHHHHHHHHHHCCGGGEEEEEECTTC-CEEEEESSCCCHHHHHHHTT T ss_pred CCHH-HHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCEECCCCCCCCHHHHHH T ss_conf 2011-331558999723389987599940434531313566533876424421137877-64331114446510577875 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC-CCCCEEHHHHHHHHHHH Q ss_conf 48775547279999999999986302573038999999999999999879816323001578-88713099999999999 Q gi|254780902|r 319 QGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGP-EQDWLSTTDFIEKISDN 397 (412) Q Consensus 319 aGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~-~~~~~~T~ef~daI~~~ 397 (412) +|||+| ||+|||||++|||+|+|+++++++|.++|++|++||.+|+++|++|+||++.+.+ ..|.+||+||+|||+++ T Consensus 316 ~gk~~A-NP~a~ILS~ammL~~lg~~~~~~~~~~aA~~Ie~Av~~~l~~G~~T~Dl~g~~~~~~gg~~~T~e~~daV~~~ 394 (399) T 1zor_A 316 GEKTST-NPTASIFAWTGAIRKRGELDGTPEVCEFADKLEKAVINTIESGVITKDLQPFTEPPIDKYVTLEEFIDEVKKN 394 (399) T ss_dssp TCCCCC-CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCGGGGGGCSSCCCCCCCHHHHHHHHHHH T ss_pred CCCCCC-CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 577731-8499999999999986122565579999999999999999779967453545677778847799999999999 Q ss_pred HHHHH Q ss_conf 99999 Q gi|254780902|r 398 LRDAL 402 (412) Q Consensus 398 l~~~l 402 (412) |++.| T Consensus 395 L~~~l 399 (399) T 1zor_A 395 LEKLL 399 (399) T ss_dssp HHTTC T ss_pred HHHHC T ss_conf 98429 No 5 >1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Probab=100.00 E-value=0 Score=754.56 Aligned_cols=366 Identities=20% Similarity=0.230 Sum_probs=317.0 Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCC-------CCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCC Q ss_conf 86799759863089999999998417-------99844899827489986528627789999998659388726448985 Q gi|254780902|r 8 KPVVSLDGDEMTRIIWQLIQENLIHP-------YLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQ 80 (412) Q Consensus 8 ~~Iv~l~GDgiG~Ei~~~~l~vl~~~-------~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~ 80 (412) ++|.+|||||||||||+++++||++. .++|+|+++++|+++|++||+++|++++++|++++++||||+++|.+ T Consensus 20 p~IavipGDGIGpEV~~~a~kVl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~et~~~~~~~da~l~g~~~~p~~ 99 (423) T 1hqs_A 20 PIIPFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDVIREYFIAIKGPLTTPVG 99 (423) T ss_dssp BEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEECCCCCCSS T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHCEEEECCCCCCCC T ss_conf 88999798863299999999999999988426898659999756499999779968899999999749198488778987 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCCC-CCCCEEEEECCCCCCCCCCEEEECCCCEEEEE-EE Q ss_conf 44321124422110458989732966883058-80487877888-77867998505666300101477788459999-95 Q gi|254780902|r 81 ARVKEFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIPG-WKKPIIIGRHAFGDQYRATDFQFPSKGKLILK-FV 157 (412) Q Consensus 81 ~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~~-~~~divivREnteg~Y~gie~~~~~~~~~~i~-~~ 157 (412) . +.+|+|+.||+.||||+|+||+ .++++|.+.+. .++|+|||||||||+|+|+|+....+....+. +. T Consensus 100 ~---------~~~s~~l~LR~~ldlyanvRP~~~~~g~~spl~~~~~iD~vivREnteG~Y~g~e~~~~~~~~~~~~~~~ 170 (423) T 1hqs_A 100 G---------GIRSLNVALRQELDLFVCLRPVRYFTGVPSPVKRPEDTDMVIFRENTEDIYAGIEYAKGSEEVQKLISFL 170 (423) T ss_dssp S---------SSCCHHHHHHHHTTCCEEEEEEECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEECTTCHHHHHHHHHH T ss_pred C---------CCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHC T ss_conf 8---------8676448889864874544440444799986678667767998127776446753146886422210102 Q ss_pred CCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 4888610255412466530101110514688999999999986599-899997426777510899999999986310024 Q gi|254780902|r 158 GDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL-PLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQ 236 (412) Q Consensus 158 ~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~-kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~ 236 (412) .. .............++.++.+|+++++||+|+||+||++|+| +||+|||+||||.|||+|++|+++|+++|+.+. T Consensus 171 ~~---~~~~~~~~~~~~~a~~~~~~Tr~~~~RI~r~AFe~A~~r~rk~vt~v~KaNvl~~tdglf~~~~~eva~~e~~~~ 247 (423) T 1hqs_A 171 QN---ELNVNKIRFPETSGIGIKPVSEEGTSRLVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDK 247 (423) T ss_dssp HH---HSCCCCCSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHHTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHHGGG T ss_pred CC---CCCCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCHHHHHHHHHHHHHCCCC T ss_conf 34---345443236764167777752778889999999999965998289996776461234416789999998762762 Q ss_pred C--------------------------CCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCC Q ss_conf 5--------------------------42320002436999999985496651-88632102326788887750753231 Q gi|254780902|r 237 F--------------------------DELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLM 289 (412) Q Consensus 237 ~--------------------------~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGla 289 (412) . .|++|+++|+++|+++||||++|++| ||||+|||||||||++|+++|||||+ T Consensus 248 ~~~~~~~d~i~~e~~~~~~~~~~~~~~~yp~I~~~~~~vD~~~~~lv~~P~~FDVivt~NlfGDILSDlaa~l~GslGl~ 327 (423) T 1hqs_A 248 VFTWAQYDRIAEEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQVGGIGIA 327 (423) T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCTTTC T ss_pred EECCCCHHHHHHHHCCHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCC T ss_conf 11123101234442200100221134557727985468999999986494227775013211057878999870898887 Q ss_pred EEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 24312798751442122220345565542487755472799999999999863025730389999999999999998798 Q gi|254780902|r 290 TSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGF 369 (412) Q Consensus 290 pSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~ 369 (412) ||+|||++..++||||+|||||| |||||+| ||+|||||++|||+|+| +.++|++|++||.+++++|+ T Consensus 328 pSanig~~~~~a~fEp~HGSAPd-----iAGk~iA-NP~a~IlS~amML~~lg-------~~~~A~~i~~Av~~vl~~g~ 394 (423) T 1hqs_A 328 PGANINYETGHAIFEATHGTAPK-----YAGLDKV-NPSSVILSGVLLLEHLG-------WNEAADLVIKSMEKTIASKV 394 (423) T ss_dssp EEEEECTTTCCEEEEESCCCCGG-----GTTTTCS-CCHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHTTE T ss_pred CCCCCCCCCCCEEEECCCCCHHH-----HCCCCCC-CHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCC T ss_conf 53016999984798679886266-----5699865-97999999999999879-------98999999999999997499 Q ss_pred CCHHHHHCCCCCCCCEEHHHHHHHHHHHHH Q ss_conf 163230015788871309999999999999 Q gi|254780902|r 370 MTKDLALLIGPEQDWLSTTDFIEKISDNLR 399 (412) Q Consensus 370 ~T~DLg~~~~~~~~~~~T~ef~daI~~~l~ 399 (412) +|+||++. .+..+.++|+||+|+|+++|+ T Consensus 395 ~T~Dl~~~-~d~gg~~~T~e~~daVi~~l~ 423 (423) T 1hqs_A 395 VTYDFARL-MDGATEVKCSEFGEELIKNMD 423 (423) T ss_dssp ECHHHHTT-SSSCEECCHHHHHHHHHHTCC T ss_pred CCCCCCCC-CCCCCCCCHHHHHHHHHHHHC T ss_conf 66551215-689964059999999998339 No 6 >2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus HB8} Probab=100.00 E-value=0 Score=743.54 Aligned_cols=338 Identities=21% Similarity=0.226 Sum_probs=305.9 Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHH-HCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCC Q ss_conf 386799759863089999999998417998448998274899865-2862778999999865938872644898544321 Q gi|254780902|r 7 TKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDL-TDDQVTIDAAHAIKNCGVGIKCATITADQARVKE 85 (412) Q Consensus 7 ~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~-tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~~ 85 (412) +++|++|||||||||||++++++|.+...+++|+++++|.+.|.+ +|+++|++++++|++++++||||++||.+ T Consensus 19 r~~IaVipGDGIGPEV~~aalkVL~a~~~~i~~e~~~~G~~~y~~~~g~~lp~etl~~i~~~daiLkGpi~tP~~----- 93 (496) T 2d1c_A 19 RKLITVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIESIRKTRVVLKGPLETPVG----- 93 (496) T ss_dssp CEEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCSHHHHTTTCTTSCCHHHHHHHHHHCEEEECCCCCCSS----- T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCCCCCHHHHHHHHHCCEEEECCCCCCCC----- T ss_conf 869999897750399999999999970998039999737998863368979899999998789899794568987----- Q ss_pred CCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCCCCE Q ss_conf 124422110458989732966883058-8048787788877867998505666300101477788459999954888610 Q gi|254780902|r 86 FNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTI 164 (412) Q Consensus 86 ~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~g~~~ 164 (412) .+++|+|++||+.||||+|+||+ .++++|.+.+.+++|+|||||||||+|+|+++....+....+ T Consensus 94 ----~~~~s~nl~LRk~LdLyaNvRPvk~~~g~~~~~~~~~iDivIVREntEGlY~g~e~~~~~~~a~~~---------- 159 (496) T 2d1c_A 94 ----YGEKSANVTLRKLFETYANVRPVREFPNVPTPYAGRGIDLVVVRENVEDLYAGIEHMQTPSVAQTL---------- 159 (496) T ss_dssp ----SSSCCHHHHHHHHTTCCEEEEEEECBTTBCCTTTTSCCEEEEEEECSSBGGGCCEEEEETTEEEEE---------- T ss_pred ----CCCCCHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEHHCCCCCCCCCCCCCCHHHEEE---------- T ss_conf ----687660478998569708853686568988744367888799833037854674223453230130---------- Q ss_pred EEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCC-CCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE Q ss_conf 25541246653010111051468899999999998659-98999974267775108999999999863100245423200 Q gi|254780902|r 165 EKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQ-LPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGIT 243 (412) Q Consensus 165 ~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~-~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i~ 243 (412) ..+|+.+++||+|+||+||++|+ ++||++||+||||.|+|+|++++++++++ ||+|+ T Consensus 160 ---------------k~itr~~seRI~r~AFe~A~~~~rkkVt~v~KaNvmk~t~glf~~~~~eva~e-------yPdI~ 217 (496) T 2d1c_A 160 ---------------KLISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQE-------YPDIE 217 (496) T ss_dssp ---------------EEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTCTTHHHHHHHHHHHHHTT-------CTTSE T ss_pred ---------------CEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH-------CCCEE T ss_conf ---------------11520114567789999998649983377513440112258999999999856-------79659 Q ss_pred HHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCC Q ss_conf 02436999999985496651-88632102326788887750753231243127987514421222203455655424877 Q gi|254780902|r 244 YTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKE 322 (412) Q Consensus 244 ~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~ 322 (412) ++|++||+++|||+++|++| ||||+|||||||||++|+++||+||+||+|+|++ ++||||+|||||| ||||| T Consensus 218 ~e~~~VD~~a~~Lv~~P~~FDVIVt~NlfGDILSDlaa~l~GslGlapSaniG~~--~amFEpvHGSAPd-----iAGk~ 290 (496) T 2d1c_A 218 AVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIGNE--VAIFEAVHGSAPK-----YAGKN 290 (496) T ss_dssp EEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTTCGGGCEEEEECSS--CEEEEESSCCCTT-----TTTSS T ss_pred EEECHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CEEEECCCCCCHH-----HCCCC T ss_conf 9855055899997319533776621421467888888875387434553201798--5577778887234-----37998 Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHCCCCCCCCEEHHHHHHHHHHHHHHH Q ss_conf 5547279999999999986302573038999999999999999879-816323001578887130999999999999999 Q gi|254780902|r 323 TSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDG-FMTKDLALLIGPEQDWLSTTDFIEKISDNLRDA 401 (412) Q Consensus 323 iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G-~~T~DLg~~~~~~~~~~~T~ef~daI~~~l~~~ 401 (412) +| ||+|||||++|||+|+|+ .++|++|++|+.+|+++| ++|+|||+. ...++|+||+|||+++|++. T Consensus 291 iA-NP~a~IlSaamML~hlg~-------~~~A~~Ie~Av~~tl~~Gki~T~DlgG~----~~~a~T~ef~daIi~~l~k~ 358 (496) T 2d1c_A 291 VI-NPTAVLLSAVMMLRYLEE-------FATADLIENALLYTLEEGRVLTGDVVGY----DRGAKTTEYTEAIIQNLGKT 358 (496) T ss_dssp CC-CCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHTSSCBHHHHCT----TTCBCHHHHHHHHHHTTTCC T ss_pred CC-CCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHCCCCCCHHHCCC----CCCCCHHHHHHHHHHHHCCC T ss_conf 75-919999999999998699-------7899999999999998598513220399----98773999999999986088 Q ss_pred HHH Q ss_conf 987 Q gi|254780902|r 402 LQK 404 (412) Q Consensus 402 l~~ 404 (412) .++ T Consensus 359 p~~ 361 (496) T 2d1c_A 359 PRK 361 (496) T ss_dssp CSS T ss_pred CCC T ss_conf 333 No 7 >1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosynthesis; 1.85A {Thermus thermophilus} Probab=100.00 E-value=0 Score=728.02 Aligned_cols=329 Identities=19% Similarity=0.178 Sum_probs=301.5 Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCC Q ss_conf 86799759863089999999998417998448998274899865286277899999986593887264489854432112 Q gi|254780902|r 8 KPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKEFN 87 (412) Q Consensus 8 ~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~~~~ 87 (412) .+|++|||||||||||+++++||++..++++|+++++|+++|+++|+++|+++++++++++++||||+++|.++. T Consensus 2 y~I~vipGDGIGpEV~~~~~~Vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~~~~~da~l~Ga~g~p~~~~----- 76 (333) T 1x0l_A 2 YRICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATLFGAATSPTRKV----- 76 (333) T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHTTTCCEEEEEECCSHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCCSSCC----- T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCCEEECCCCCCCCCC----- T ss_conf 389998977668999999999999739697999981379999987994889999999835842775678988778----- Q ss_pred CCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCCCCEEEE Q ss_conf 44221104589897329668830588048787788877867998505666300101477788459999954888610255 Q gi|254780902|r 88 LKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKE 167 (412) Q Consensus 88 l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~~~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~g~~~~~~ 167 (412) .+++|+|+.||++||||+|+||. +++|.+....++|++||||||||+|+|.++... + T Consensus 77 --~~~~~~~~~LR~~ldLyanvRP~--k~~p~~~~~~~iDivivREnteG~Y~g~e~~~~-d------------------ 133 (333) T 1x0l_A 77 --PGFFGAIRYLRRRLDLYANVRPA--KSRPVPGSRPGVDLVIVRENTEGLYVEQERRYL-D------------------ 133 (333) T ss_dssp --TTCCCHHHHHHHHTTCCEEEEEE--ECCSSTTCCSSCEEEEEEECGGGTCCCCEEEET-T------------------ T ss_pred --CCCHHHHHHHHHHCCCCEEEEEE--ECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC-C------------------ T ss_conf --77102799999974987379988--545786778998689981344664445433456-6------------------ Q ss_pred EECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHH Q ss_conf 412466530101110514688999999999986599-8999974267775108999999999863100245423200024 Q gi|254780902|r 168 VFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL-PLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYTH 246 (412) Q Consensus 168 ~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~-kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i~~~~ 246 (412) .....+.+|+.+++||+|+||++|++|+| +||++||+|||+.++|+|+++++|++++ ||+|+++| T Consensus 134 -------~~~~~~~~Tr~~~eRI~r~Afe~A~~r~rk~vt~v~K~nv~~~~~g~f~~~~~e~ak~-------yp~I~~~~ 199 (333) T 1x0l_A 134 -------VAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVAKD-------FPLVNVQD 199 (333) T ss_dssp -------EEEEEEEEEHHHHHHHHHHHHHHHHTSTTCEEEEEECTTTCTTHHHHHHHHHHHHHTT-------CTTSEEEE T ss_pred -------CEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCHHHHHHHHHHHCC-------CCCEEEEE T ss_conf -------4145676205776799999999999769988752565644512224899999999810-------88538974 Q ss_pred HHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCC Q ss_conf 36999999985496651-88632102326788887750753231243127987514421222203455655424877554 Q gi|254780902|r 247 RLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETST 325 (412) Q Consensus 247 ~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~ 325 (412) ++||++|||||++|++| ||||+|||||||||++|+++||||++||+|+|++ .+||||+|||||| |||||+| T Consensus 200 ~~vD~~~~~lv~~P~~fdViv~~Nl~GDIlSD~~a~l~GslG~~ps~nig~~--~~~fEp~HGsapd-----iaGk~ia- 271 (333) T 1x0l_A 200 IIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVGGLGLAPSGNIGDT--TAVFEPVHGSAPD-----IAGKGIA- 271 (333) T ss_dssp EEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECSS--CEEEEESSCCCGG-----GTTSSCC- T ss_pred EHHHHHHHHHHCCCHHCCEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC--HHHHHCCCCCCHH-----HCCCCCC- T ss_conf 2267999998569031583015741077889998752488776775300853--1233204688522-----2489866- Q ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEHHHHHHHHHHHHHH Q ss_conf 727999999999998630257303899999999999999987981632300157888713099999999999999 Q gi|254780902|r 326 NSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKISDNLRD 400 (412) Q Consensus 326 NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~T~ef~daI~~~l~~ 400 (412) ||+|||||++|||+|+| ++++|++|++||.+++++|++|+||| |.+||+||+|+|+++|++ T Consensus 272 NP~a~ils~ammL~~lg-------~~~~a~~i~~Av~~~l~~g~~T~Dlg-------g~~~T~e~~dai~~~l~~ 332 (333) T 1x0l_A 272 NPTAAILSAAMMLDYLG-------EKEAAKRVEKAVDLVLERGPRTPDLG-------GDATTEAFTEAVVEALKS 332 (333) T ss_dssp CCHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHSCCCGGGT-------CCCCHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCCCCC-------CCCCHHHHHHHHHHHHHH T ss_conf 95999999999999869-------97899999999999996699561039-------997499999999999963 No 8 >2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Probab=100.00 E-value=0 Score=733.24 Aligned_cols=361 Identities=20% Similarity=0.210 Sum_probs=308.7 Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCC-------CCCCEEEEEECCHHHHHHH--CCCCCHHHHHHHHHCCEEEECCCCCCC Q ss_conf 6799759863089999999998417-------9984489982748998652--862778999999865938872644898 Q gi|254780902|r 9 PVVSLDGDEMTRIIWQLIQENLIHP-------YLDIKIEYFDLSIQNRDLT--DDQVTIDAAHAIKNCGVGIKCATITAD 79 (412) Q Consensus 9 ~Iv~l~GDgiG~Ei~~~~l~vl~~~-------~~~i~~e~~d~G~~~~d~t--g~~l~~da~eaik~~~v~lkg~~~tP~ 79 (412) .|.+||||||||||++++++||++. .++|+|.++++|.++++++ |+++|+++++++++++++||||+++|. T Consensus 28 ~IavipGDGIGpEV~~~~~~Vl~~~~~~~~~~~~~i~~~~~~~G~~a~~~~g~g~~lP~et~~~~~~~dail~G~i~~p~ 107 (429) T 2d4v_A 28 IIPFIEGDGIGCDVTPAMRSVVDAAVAKVYGGQRQIAWMELFAGQKAVQLYGEGQYLPDETMAAIREYKVAIKGPLETPV 107 (429) T ss_dssp EEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHHCEEEECCCCCCS T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHCCEEEECCCCCCC T ss_conf 89997878320999999999999986675178764289997256877645188986989999999878999979877888 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCCC-CCCCEEEEECCCCCCCCCCEEEECCCCEEEEE-E Q ss_conf 544321124422110458989732966883058-80487877888-77867998505666300101477788459999-9 Q gi|254780902|r 80 QARVKEFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIPG-WKKPIIIGRHAFGDQYRATDFQFPSKGKLILK-F 156 (412) Q Consensus 80 ~~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~~-~~~divivREnteg~Y~gie~~~~~~~~~~i~-~ 156 (412) +. +.+|+|+.||+.||||+|+||+ .++++|.+... .++|+|||||||||+|+|.++....+....+. + T Consensus 108 ~~---------~~~~~~l~LR~~ldLyanlRP~~~~~g~~~~~~~~~~iD~vIVREnteG~Y~g~~~~~~~~~~~~~~~~ 178 (429) T 2d4v_A 108 GG---------GIRSLNVAMRQDLDLYVCLRPVRYFEGTPSPMRHPEKVDMVIFRENSEDIYAGIEWPAGSPEAEKIIRF 178 (429) T ss_dssp SS---------SSCCHHHHHHHHTTCCEEEEEEECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEECTTCHHHHHHHHH T ss_pred CC---------CCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 88---------753566899986797465423336678887334756677799974676543551124677320012000 Q ss_pred ECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 54888610255412466530101110514688999999999986599-89999742677751089999999998631002 Q gi|254780902|r 157 VGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL-PLYLSTKDTILKSYDGRFKNIFNEIFEAEFKN 235 (412) Q Consensus 157 ~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~-kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~ 235 (412) ..+ ...........+.++.++.+|+.+++|++|+||+||++|++ +||++||+|||+.++|+|++++++|+++||.. T Consensus 179 ~~~---~~~~~~~~~~~~~a~~~~v~t~~~~~Ri~r~Af~~A~~r~~k~vt~v~KaNvl~~s~glf~~~~~~va~~~~~~ 255 (429) T 2d4v_A 179 LRE---EMGVTKIRFPDSSAIGIKPVSTEGSERLIRRTIQYALEHGKPSVSLVHKGNIMKFTEGGFRDWGYALAEREFAG 255 (429) T ss_dssp HHH---TSCCCCCSCGGGEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHSTT T ss_pred HHH---HCCCCEEECCCCEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCC T ss_conf 001---02520340798479999986117789999999999986599806888457623002006999999998876056 Q ss_pred C--------------------------CCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCC Q ss_conf 4--------------------------542320002436999999985496651-8863210232678888775075323 Q gi|254780902|r 236 Q--------------------------FDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGL 288 (412) Q Consensus 236 ~--------------------------~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGl 288 (412) + ..|++++++|+++||+|||||++|++| ||||+|||||||||++|+++||||| T Consensus 256 ~~~~wr~~~~~~~~~~~~~~~~~e~~~~~~~~i~~~~~~vD~~a~~lv~~P~~FDVIv~~NlfGDILSDlaa~l~GslGl 335 (429) T 2d4v_A 256 RVFTWRQKAAISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLNGDYVSDALAAEVGGIGM 335 (429) T ss_dssp TEEEHHHHHHHHHHHCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCGGG T ss_pred CCCCCCEEEEECCCCCCCCCCCCEECCCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCCCC T ss_conf 55331122110000243344320002446764587379999999998439301757741321447899999998604565 Q ss_pred CEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 12431279875144212222034556554248775547279999999999986302573038999999999999999879 Q gi|254780902|r 289 MTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDG 368 (412) Q Consensus 289 apSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G 368 (412) +||+|||++ .+||||+|||||| |||||+| ||+|||||++|||+|+| +.++|++|++||.+++++| T Consensus 336 ~pSanig~~--~a~FEp~HGSAPd-----iaGk~iA-NP~A~IlS~amML~~lg-------~~~~A~~Ie~AV~~vl~~G 400 (429) T 2d4v_A 336 APGANLSDT--HAIFEATHGTAPD-----IAGQGKA-NPSSLILSAVMMLEHLG-------WGEAAQAIVAAMNATIAAG 400 (429) T ss_dssp CCCEEECSS--CEEEECSCCCCTT-----TTTTTCC-CCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHTT T ss_pred CCCCCCCCC--CEEEECCCCCCCC-----CCCCCCC-CCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCC T ss_conf 641102898--7577779887523-----3799964-92999999999999879-------9889999999999999769 Q ss_pred CCCHHHHHCCCCCCCCEEHHHHHHHHHHH Q ss_conf 81632300157888713099999999999 Q gi|254780902|r 369 FMTKDLALLIGPEQDWLSTTDFIEKISDN 397 (412) Q Consensus 369 ~~T~DLg~~~~~~~~~~~T~ef~daI~~~ 397 (412) ++|+|||+.. ++...+||+||+|||+++ T Consensus 401 ~~T~DLgg~~-~~~~~~sT~e~~~aIi~r 428 (429) T 2d4v_A 401 EVTGDLAALR-GDVPALSTTEFTAALIRR 428 (429) T ss_dssp CEEHHHHTTC-TTCCEECHHHHHHHHHTT T ss_pred CCCCCCCCCC-CCCCCCCHHHHHHHHHHH T ss_conf 9664557788-898876899999999951 No 9 >2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Probab=100.00 E-value=0 Score=726.19 Aligned_cols=361 Identities=21% Similarity=0.210 Sum_probs=309.1 Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCC----CCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCC Q ss_conf 6799759863089999999998417----998448998274899865286277899999986593887264489854432 Q gi|254780902|r 9 PVVSLDGDEMTRIIWQLIQENLIHP----YLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVK 84 (412) Q Consensus 9 ~Iv~l~GDgiG~Ei~~~~l~vl~~~----~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~ 84 (412) .|.||||||||||||.++++||++. .++++|.++++|+++|+++|+++|+++++++++++++||||+++|.+. T Consensus 29 ~IavipGDGIGpEV~~~~~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~~p~~t~~~~~~~da~l~G~i~~P~~~--- 105 (412) T 2iv0_A 29 IIPYFEGDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNYLPDDTLNAIKEFRVALKGPLTTPVGG--- 105 (412) T ss_dssp EEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCEEEECCCCCCSSS--- T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHCEEEECCCCCCCCC--- T ss_conf 89993898314999999999999985051896599996373999998699188999999998296960887698988--- Q ss_pred CCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCCC-CCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCCC Q ss_conf 1124422110458989732966883058-80487877888-778679985056663001014777884599999548886 Q gi|254780902|r 85 EFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIPG-WKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQ 162 (412) Q Consensus 85 ~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~~-~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~g~ 162 (412) +++|+|+.||+.||+|+|+||+ .+++++.+... .++|++||||||||+|+|+||....+....+.... T Consensus 106 ------~~~~~~l~LR~~ldlyanvRP~~~~~g~~spl~~~~~iD~vivREnteG~Y~g~e~~~~~~~~~~~~~~~---- 175 (412) T 2iv0_A 106 ------GYRSLNVTIRQVLDLYANVRPVYYLKGVPSPIKHPEKVNFVIFRENTEDVYAGIEWPRGSEEALKLIRFL---- 175 (412) T ss_dssp ------SSSHHHHHHHHHTTCCEEEEEEECCTTSCCSBSCGGGCEEEEEEECSSSGGGCCEECTTCHHHHHHHHHH---- T ss_pred ------CCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCEEEEC---- T ss_conf ------8576438899864883860013456888786667344766998115677656644346761010125621---- Q ss_pred CEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHHCC------- Q ss_conf 10255412466530101110514688999999999986599-8999974267775108999999999863100------- Q gi|254780902|r 163 TIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL-PLYLSTKDTILKSYDGRFKNIFNEIFEAEFK------- 234 (412) Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~-kvt~v~KaNVlk~tdglf~~~~~eva~~~~~------- 234 (412) ...............++.+|+.+++||+|+||+||++|++ +||++||+|||+.|||+|++|++|+++++|+ T Consensus 176 -~~~~~~~i~~~~a~~~~~~t~~~~~Ri~r~Af~~A~~~~rk~vt~v~KaNvl~~sdglf~~~~~eva~~ef~~~~~~~~ 254 (412) T 2iv0_A 176 -KNEFGVTIREDSGIGIKPISEFATKRLVRMAIRYAIENNRKSVTLVHKGNIMKYTEGAFRDWGYEVAKQEFGEYCITED 254 (412) T ss_dssp -HHHHCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTCTTTHHHHHHHHHHHHHHHSTTTEECHH T ss_pred -CCCCCEECCCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf -4546500256505777873489999999999999997499817998774210321307999999999986354564420 Q ss_pred -------CCCCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCC Q ss_conf -------24542320002436999999985496651-8863210232678888775075323124312798751442122 Q gi|254780902|r 235 -------NQFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAA 306 (412) Q Consensus 235 -------~~~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~ 306 (412) .++++++|+++|+|||+|+||||++|++| ||||+|||||||||++|+++||||++||+|+|++ .+||||+ T Consensus 255 e~~~~~~~~~~~~~I~~~~~~vD~~~~~lv~~P~~fDVIvt~NlfGDILSDlaa~l~GglGl~pSanig~~--~a~FEp~ 332 (412) T 2iv0_A 255 ELWDKYGGKQPEGKIVVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGSNIGDG--IGVFEPV 332 (412) T ss_dssp HHHHHHTTCCCTTCEEEEEEEGGGHHHHHHHSGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCEEEEEETT--EEEEEES T ss_pred HHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC--CEEEECC T ss_conf 23223124588870699544578999875018776876620540346888888885388777774446897--4321046 Q ss_pred CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEE Q ss_conf 22034556554248775547279999999999986302573038999999999999999879816323001578887130 Q gi|254780902|r 307 HGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLS 386 (412) Q Consensus 307 HGSAPd~~g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~ 386 (412) |||||| |||||+| ||+|||||++|||+|+|+ .++|++|++||.+|+++|++|+||.+.. +.+.++ T Consensus 333 HGSAPd-----iaGk~iA-NP~a~IlS~amML~~lg~-------~~~A~~i~~AV~~vl~~G~~T~Dl~~~~--~Gg~~~ 397 (412) T 2iv0_A 333 HGSAPK-----YAGQNKV-NPTAEILTGALMFEYIGW-------KDASEMIKKAVEMTISSGIVTYDIHRHM--GGTKVG 397 (412) T ss_dssp SCCCST-----TTTSSCS-CCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHTTEECHHHHHHH--CSEECC T ss_pred CCCHHH-----HCCCCCC-CCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCCC T ss_conf 685155-----4689876-959999999999998699-------7899999999999997599565556467--997048 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999999 Q gi|254780902|r 387 TTDFIEKISDNLRD 400 (412) Q Consensus 387 T~ef~daI~~~l~~ 400 (412) |+||+|||+++|++ T Consensus 398 T~e~~daV~~~L~~ 411 (412) T 2iv0_A 398 TREFAEAVVENLQS 411 (412) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHC T ss_conf 99999999999962 No 10 >2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Probab=100.00 E-value=0 Score=730.26 Aligned_cols=361 Identities=21% Similarity=0.235 Sum_probs=311.1 Q ss_pred CEEEECCCCCCHHHHHHHHHHHHC-------CCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCC Q ss_conf 679975986308999999999841-------7998448998274899865286277899999986593887264489854 Q gi|254780902|r 9 PVVSLDGDEMTRIIWQLIQENLIH-------PYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQA 81 (412) Q Consensus 9 ~Iv~l~GDgiG~Ei~~~~l~vl~~-------~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~ 81 (412) +|++||||||||||++++++||.+ ..++|+|.++++|.++++++|+++|+++++++++++++||||+++|.+ T Consensus 26 ~I~vipGDGIGpEV~~~~~kVL~~~~~~~~g~~~~i~~~~~~~G~~~~~~~g~~lp~et~~~~~~~dail~Ga~~~P~~- 104 (409) T 2e0c_A 26 VILYIEGDGIGPEITNAAIKVINKAVERAYGSSREIKWLEVYAGEKAEKLVNDRFPKETQEMLLKYRVVLKGPLETPIG- 104 (409) T ss_dssp EEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEECCCC----- T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCC- T ss_conf 8999798852699999999999999987438887418999805177887629978399999999779799786568887- Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCCC-CCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECC Q ss_conf 4321124422110458989732966883058-80487877888-778679985056663001014777884599999548 Q gi|254780902|r 82 RVKEFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIPG-WKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGD 159 (412) Q Consensus 82 ~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~~-~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~ 159 (412) .+++|+|+.||+.||||+|+||. .+++++.+... .++|++||||||||+|+|+++....+....+.... T Consensus 105 --------~~~~~~~~~lR~~ldlyanvRP~r~~~gl~s~~~~~~~iDivIvREnteg~Y~g~e~~~~~~~~~~~~~~~- 175 (409) T 2e0c_A 105 --------KGWKSVNVAIRLMLDLYANIRPVKYIEGLESPLKHPEKVDMIIFRENTDDLYRGIEYPFNSEEAKKIRDFL- 175 (409) T ss_dssp ------------CHHHHHHHHTTCCEEEEEEECCTTCCCSBSCCTTCEEEEEEECSSGGGGCCEECTTSHHHHHHHHHH- T ss_pred --------CCCCCCCHHHHHHCCCCEECCCEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC- T ss_conf --------88765135678864984541303314688787678666767997177765334641034654443100113- Q ss_pred CCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCC-CCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCC--- Q ss_conf 8861025541246653010111051468899999999998659-989999742677751089999999998631002--- Q gi|254780902|r 160 DGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQ-LPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKN--- 235 (412) Q Consensus 160 ~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~-~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~--- 235 (412) ......+.....+..++++|+.+++||+|+||+||++|+ ++||++||+|||+.|+|+|++|++|++.++|++ T Consensus 176 ----~~~~~~e~~~~~~~~~~~~t~~~~~Ri~r~Af~~A~~~~rk~Vt~v~KaNvl~~t~glf~~~~~eva~~~~~d~~~ 251 (409) T 2e0c_A 176 ----RKELKVEIEDDTGIGIKVMSKYKTQRITRLAIQYAIEHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEYRDFIV 251 (409) T ss_dssp ----HHHSCCCCCSSEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTTHHHHHHHHHHHHHHHSTTTEE T ss_pred ----CCCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEE T ss_conf ----5666530378615999987546589999999999997189968999688513234659999999998874585256 Q ss_pred --------CCCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCC Q ss_conf --------4542320002436999999985496651-8863210232678888775075323124312798751442122 Q gi|254780902|r 236 --------QFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAA 306 (412) Q Consensus 236 --------~~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~ 306 (412) +++|++|+++|+|||+++||||++|++| ||||+|||||||||++|+++|||||+||+|+|++ .+||||+ T Consensus 252 ~~~~~~~~~~~~~~I~~~~~~vD~~~~~Lv~~P~~fDViv~~NlfGDIlSDlaa~l~GslGl~pSanig~~--~a~fEp~ 329 (409) T 2e0c_A 252 TEEEINQGKPDQGKIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIGMLGGANIGDE--GGMFEAI 329 (409) T ss_dssp EHHHHTTTCCCTTSEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEEEETT--EEEEEES T ss_pred EEEEEECCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CEEEECC T ss_conf 78786136887771898388799999998329766734432011117888899886088763542214798--6387589 Q ss_pred CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEE Q ss_conf 22034556554248775547279999999999986302573038999999999999999879816323001578887130 Q gi|254780902|r 307 HGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLS 386 (412) Q Consensus 307 HGSAPd~~g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~ 386 (412) |||||| |||||+| ||+|||||++|||+|+| +.++|++|++||.+++++|++|+|||+..+ .+.++ T Consensus 330 HGSApd-----iaGk~iA-NP~a~IlS~ammL~~lg-------~~~~A~~Ie~AV~~~l~~g~~T~Dlgg~~g--~~~~~ 394 (409) T 2e0c_A 330 HGTAPK-----YAGKNVA-NPTGIIKAGELMLRWMG-------WNEAADLIEKAINMAIRDKKVTQDIARFMG--VKALG 394 (409) T ss_dssp SCCCGG-----GTTTTCS-CTHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHTTCCCHHHHHHHT--SCCCC T ss_pred CCCHHH-----HCCCCCC-CCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCC T ss_conf 886256-----4799876-90999999999999879-------989999999999999976993601265679--98668 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999999 Q gi|254780902|r 387 TTDFIEKISDNLRD 400 (412) Q Consensus 387 T~ef~daI~~~l~~ 400 (412) |+||+|+|+++|++ T Consensus 395 T~e~~daVi~~l~~ 408 (409) T 2e0c_A 395 TKEYADELIKIMDT 408 (409) T ss_dssp HHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHC T ss_conf 89999999999731 No 11 >1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Probab=100.00 E-value=0 Score=726.84 Aligned_cols=350 Identities=18% Similarity=0.160 Sum_probs=308.1 Q ss_pred CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC----CCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCC Q ss_conf 974011386799759863089999999998417----9984489982748998652862778999999865938872644 Q gi|254780902|r 1 MKKIKVTKPVVSLDGDEMTRIIWQLIQENLIHP----YLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATI 76 (412) Q Consensus 1 m~Kikm~~~Iv~l~GDgiG~Ei~~~~l~vl~~~----~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~ 76 (412) |+| +.+|++|||||||||||+++++||++. .++++|+++++|.++|++||+++|+++++++++++++||||++ T Consensus 1 Msk---~ykI~vipGDGIGpEv~~~~~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~~t~~~~~~~~a~l~g~~~ 77 (363) T 1cnz_A 1 MSK---NYHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFGSVG 77 (363) T ss_dssp CCC---CEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECC T ss_pred CCC---CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHCCCCCHHHHHHHHHCCCEEEECCC T ss_conf 999---86599988788879999999999999876609825999996238799975997889999999850411572346 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCC------CCCCCCEEEEECCCCCCCCCCEEEECCC Q ss_conf 898544321124422110458989732966883058-804878778------8877867998505666300101477788 Q gi|254780902|r 77 TADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLI------PGWKKPIIIGRHAFGDQYRATDFQFPSK 149 (412) Q Consensus 77 tP~~~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~------~~~~~divivREnteg~Y~gie~~~~~~ 149 (412) +|.+++.+.. ..+.+|+|++||+.||||+|+||+ .+++++... ...++|++|+||||||+|+|.++....+ T Consensus 78 ~p~~~~~~~~--~~~~~s~~~~lR~~ldlyanvRp~~~~~g~~~~~~~~~~~~~~~vD~vivRenteg~Y~~~~~~~~~~ 155 (363) T 1cnz_A 78 GPKWENLPPE--SQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGS 155 (363) T ss_dssp CGGGTTSCGG--GSTTHHHHHHHHHHHTCCEEEEEEECCTTCGGGCSBCHHHHHHCCEEEEEEECSSGGGTCSSCEEECC T ss_pred CCCCCCCCCC--CCCCCCHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCEECCCCCEECCC T ss_conf 8887778866--66441368999998288367677773036543468865548899139999966686114666301268 Q ss_pred CEEEEEEECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHH Q ss_conf 45999995488861025541246653010111051468899999999998659989999742677751089999999998 Q gi|254780902|r 150 GKLILKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIF 229 (412) Q Consensus 150 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva 229 (412) .. .+.+..+..+|+.+++||+|+||+||++|++|||++||+|||| ++++|+++++|++ T Consensus 156 ~~---------------------~~~~~~~~~~t~~~~~Ri~r~Af~~A~~~~kkVt~v~K~Nilk-~~~lf~~~~~eva 213 (363) T 1cnz_A 156 GQ---------------------YEKAFDTEVYHRFEIERIARIAFESARKRRRKVTSIDKANVLQ-SSILWREIVNDVA 213 (363) T ss_dssp GG---------------------GCEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH T ss_pred CC---------------------EEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-CHHHHHHHHHHHH T ss_conf 85---------------------0699865886389999999999999996799689995586443-1688999999986 Q ss_pred HHHCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCC Q ss_conf 6310024542320002436999999985496651-886321023267888877507532312431279875144212222 Q gi|254780902|r 230 EAEFKNQFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHG 308 (412) Q Consensus 230 ~~~~~~~~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HG 308 (412) ++ ||+|+++++++|++|||||++|++| ||||+|||||||||++|+++||+|++||+|+|+++ ++||||+|| T Consensus 214 ~~-------yp~i~~~~~~vD~~~~~lv~~P~~fdViv~~Nl~GDIlSD~~a~l~GglGl~~s~nig~~~-~a~fEp~HG 285 (363) T 1cnz_A 214 KT-------YPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQG-FGLYEPAGG 285 (363) T ss_dssp TT-------CTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTS-CEEEEESSC T ss_pred CC-------CCCEEEEEHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCEECCCC-CEEECCCCC T ss_conf 22-------8974885144669999985086668778545325889999998843997657742446987-368606788 Q ss_pred CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEH Q ss_conf 03455655424877554727999999999998-63025730389999999999999998798163230015788871309 Q gi|254780902|r 309 TVTRHYRQHQQGKETSTNSIASIFAWTRGLLH-RAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLST 387 (412) Q Consensus 309 SAPd~~g~~iaGk~iA~NP~a~IlS~ammL~h-lg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~T 387 (412) |||| |||||+| ||+|||||++|||+| +| +.++|++|++||.+|+++|++|+||++ ..+.+|| T Consensus 286 sapd-----iaGk~~a-NP~a~IlS~ammL~~~lg-------~~~~A~~ie~Av~~~l~~G~~T~Dl~~----~~~~~sT 348 (363) T 1cnz_A 286 SAPD-----IAGKNIA-NPIAQILSLALLLRYSLD-------ANDAATAIEQAINRALEEGVRTGDLAR----GAAAVST 348 (363) T ss_dssp CCGG-----GTTTTCS-CCHHHHHHHHHHHHHHSS-------CHHHHHHHHHHHHHHHHTTCCCGGGTT----TTTCCCH T ss_pred CCCC-----CCCCCCC-CCHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCCCCCC----CCCCCCH T ss_conf 7300-----1688866-939999999999974189-------879999999999999976995745358----9974899 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999999 Q gi|254780902|r 388 TDFIEKISDNLRDAL 402 (412) Q Consensus 388 ~ef~daI~~~l~~~l 402 (412) +||+|+|+++|++.| T Consensus 349 ~e~~dai~~~i~~~~ 363 (363) T 1cnz_A 349 DEMGDIIARYVAEGV 363 (363) T ss_dssp HHHHHHHHHHHHTCC T ss_pred HHHHHHHHHHHHHHC T ss_conf 999999999986129 No 12 >1v53_A 3-isopropylmalate dehydrogenase; IPMDH, HOMO dimer, X-RAY analysis, oxidoreductase; 2.85A {Bacillus coagulans} SCOP: c.77.1.1 PDB: 2ayq_A 1v5b_A Probab=100.00 E-value=0 Score=724.22 Aligned_cols=351 Identities=17% Similarity=0.171 Sum_probs=306.6 Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCC----CCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCC Q ss_conf 1386799759863089999999998417----998448998274899865286277899999986593887264489854 Q gi|254780902|r 6 VTKPVVSLDGDEMTRIIWQLIQENLIHP----YLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQA 81 (412) Q Consensus 6 m~~~Iv~l~GDgiG~Ei~~~~l~vl~~~----~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~ 81 (412) |+.+|++||||||||||++++++||.+. .++++|+++++|.++|+++|+++|+++++++++++++||||++||.+. T Consensus 1 M~~kIavipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~et~~~i~~~da~l~Ga~~~p~~~ 80 (366) T 1v53_A 1 MKMKLAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLDICRRSDAILLGAVGGPKWD 80 (366) T ss_dssp CCEEEEEEEESTTHHHHHHHHHHHHHHHHTTSSCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGS T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCCCCCC T ss_conf 97159998978855999999999999998624997499999657999997599088999999996193699155688767 Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCC----C-CCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEE Q ss_conf 4321124422110458989732966883058-80487877----8-8877867998505666300101477788459999 Q gi|254780902|r 82 RVKEFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRL----I-PGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILK 155 (412) Q Consensus 82 ~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~----~-~~~~~divivREnteg~Y~gie~~~~~~~~~~i~ 155 (412) ..+.. + ...++|++||+.||||+|+||+ .++++... . ...++|+|||||||||+|+|.++....+. T Consensus 81 ~~~~~-~--~~~~~~~~LR~~ldlyanvRP~~~~~g~~~~sP~~~~~~~~iD~vIvREntEg~Y~g~~~~~~~~~----- 152 (366) T 1v53_A 81 HNPAS-L--RPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLKRERVENVDLVIVRELTGGLYFGRPSERRGPG----- 152 (366) T ss_dssp SSCGG-G--CHHHHHHHHHHHHTCCEEEEEEECCGGGTTTSSBCHHHHTTCEEEEEEECSSBTTTCSCEEEESST----- T ss_pred CCCCC-C--CCCCCHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCC----- T ss_conf 78987-4--742014889997187577755543205566899888888980299963068985657565026887----- Q ss_pred EECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 95488861025541246653010111051468899999999998659989999742677751089999999998631002 Q gi|254780902|r 156 FVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKN 235 (412) Q Consensus 156 ~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~ 235 (412) ...+..++++++..++|++|+||++|++|++|||++||+|||+ ++++|+++++|++++ T Consensus 153 -----------------~~~~~~~~~~t~~~~~riar~af~~A~~~~kkVt~v~K~nv~~-~~~l~~~~~~eva~~---- 210 (366) T 1v53_A 153 -----------------ENEVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVLE-SSRMWREIAEETAKK---- 210 (366) T ss_dssp -----------------TCEEEEEEEEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTCH-HHHHHHHHHHHHHTT---- T ss_pred -----------------CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEC-CCHHHHHHHHHHHHH---- T ss_conf -----------------6489987413389999999999999986799256742664011-333599999999826---- Q ss_pred CCCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHH Q ss_conf 4542320002436999999985496651-886321023267888877507532312431279875144212222034556 Q gi|254780902|r 236 QFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHY 314 (412) Q Consensus 236 ~~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~ 314 (412) ||+|++++++||++|||||++|++| ||||+|||||||||++|+++||+|++||+|++.++ ++||||+|||||| T Consensus 211 ---yp~i~~~~~~vD~~~~~lv~~P~~fdViv~~Nl~GDIlSD~~a~l~GglGl~~s~ni~~d~-~a~fEp~HGsApd-- 284 (366) T 1v53_A 211 ---YPDVELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGSLGMLPSASLRSDR-FGMYEPVHGSAPD-- 284 (366) T ss_dssp ---CTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHTTTTSCTTSCEEEEECSSS-CEEEEESSCCCGG-- T ss_pred ---CCCEEEEEEECHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCEECCCC-CEEECCCCCCHHH-- T ss_conf ---8977999987428899983186656645214068889999999862775546642656986-4686157786577-- Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEHHHHHHH Q ss_conf 55424877554727999999999998-63025730389999999999999998798163230015788871309999999 Q gi|254780902|r 315 RQHQQGKETSTNSIASIFAWTRGLLH-RAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEK 393 (412) Q Consensus 315 g~~iaGk~iA~NP~a~IlS~ammL~h-lg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~T~ef~da 393 (412) |||||+| ||+|||||++|||+| +| ++++|++|++||.+|+++|++|+||.. ...|.++|+||+|| T Consensus 285 ---iaGk~~a-NP~a~ilS~ammL~~~lg-------~~~~a~~i~~Av~~~l~~g~~T~Dl~~---~~gg~~~T~e~~~a 350 (366) T 1v53_A 285 ---IAGQGKA-NPLGTVLSAALMLRYSFG-------LEKEAAAIEKAVDDVLQDGYCTGDLQV---ANGKVVSTIELTDR 350 (366) T ss_dssp ---GTTSSCC-CCHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHTTEESSSSCC---TTCEECCHHHHHHH T ss_pred ---HCCCCCC-CCHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCCCCCC---CCCCCCCHHHHHHH T ss_conf ---6699875-949999999999986379-------889999999999999985992646566---79970469999999 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999998730 Q gi|254780902|r 394 ISDNLRDALQKNL 406 (412) Q Consensus 394 I~~~l~~~l~~~~ 406 (412) |+++|++.+...+ T Consensus 351 vi~~l~~~~~~~~ 363 (366) T 1v53_A 351 LIEKLNNSAAGPR 363 (366) T ss_dssp HHHHCC------- T ss_pred HHHHHHHCCCCCC T ss_conf 9998740034673 No 13 >3dms_A Isocitrate dehydrogenase [NADP]; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ... Probab=100.00 E-value=0 Score=727.18 Aligned_cols=364 Identities=19% Similarity=0.206 Sum_probs=313.1 Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCC-------CCCCEEEEEECCHHHHHHHCC--CCCHHHHHHHHHCCEEEECCCCCC Q ss_conf 86799759863089999999998417-------998448998274899865286--277899999986593887264489 Q gi|254780902|r 8 KPVVSLDGDEMTRIIWQLIQENLIHP-------YLDIKIEYFDLSIQNRDLTDD--QVTIDAAHAIKNCGVGIKCATITA 78 (412) Q Consensus 8 ~~Iv~l~GDgiG~Ei~~~~l~vl~~~-------~~~i~~e~~d~G~~~~d~tg~--~l~~da~eaik~~~v~lkg~~~tP 78 (412) ++|.+||||||||||++++++||++. .++|+|+++++|.+++++||+ ++|+++++++++++++||||+++| T Consensus 37 p~IavIpGDGIGPEV~~aa~kVL~a~~e~~~~~~~~ie~~~~~~G~~~~~~~G~~~~lp~et~~~~~~~da~l~G~~~~P 116 (427) T 3dms_A 37 PIIPYIEGDGTGFDITPVMIKVVDAAVEKAYGGKKKIHWMEIYAGEKATKVYGPDVWLPEETLQVLKEYVVSIKGPLTTP 116 (427) T ss_dssp BEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHTCEEEECCCCCC T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHCCCCCCCHHHHHHHHHCCEEEECCCCCC T ss_conf 88999766721699999999999999998548999749999947489999749988897999999997499997985589 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCC-CCCCCEEEEECCCCCCCCCCEEEECCCCEEEEE- Q ss_conf 8544321124422110458989732966883058-8048787788-877867998505666300101477788459999- Q gi|254780902|r 79 DQARVKEFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIP-GWKKPIIIGRHAFGDQYRATDFQFPSKGKLILK- 155 (412) Q Consensus 79 ~~~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~-~~~~divivREnteg~Y~gie~~~~~~~~~~i~- 155 (412) .+. +++|+|+.||+.||||+|+||+ .++++|.+.. +.++|+|||||||||+|+|+++....+....+. T Consensus 117 ~~~---------~~~s~~l~LR~~ldlyaniRPvr~~~g~~~p~~~~~~iD~vIVREntEG~Y~g~~~~~~~~~~~~~~~ 187 (427) T 3dms_A 117 VGG---------GIRSLNVALRQELDLYVCLRPIQYFKGVPSPVREPEKTNMVIFRENSEDIYAGIEWAAESEQAKKVIK 187 (427) T ss_dssp C-------------CCHHHHHHHHTTCCEEEEEECCCTTCCCSSSCGGGCCEEEEEECSSGGGGCCEECTTCHHHHHHHH T ss_pred CCC---------CCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 988---------85762188898747812210245668998755674557658972476210357421235421033655 Q ss_pred EECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 954888610255412466530101110514688999999999986599-8999974267775108999999999863100 Q gi|254780902|r 156 FVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL-PLYLSTKDTILKSYDGRFKNIFNEIFEAEFK 234 (412) Q Consensus 156 ~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~-kvt~v~KaNVlk~tdglf~~~~~eva~~~~~ 234 (412) +..+... ........+.++.++.+|+.+++||+|+||++|++|++ +||++||+|||+.|+|+||+++++++++||. T Consensus 188 ~~~e~~~---~~~~~~~~~~a~~~~~~tr~~~~Riar~AF~~A~~r~~k~vt~v~KaNvl~~s~glf~~~~~~va~~~~~ 264 (427) T 3dms_A 188 FLQEEMG---VKKIRFPQTSGIGIKPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGAFRDAGYALAQKEFG 264 (427) T ss_dssp HHHHTSC---CCCCSCGGGCCEECCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHHHHHHHC T ss_pred HHHHHCC---CCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 3032115---3222477524898641208989999999999999769983689967865320067899999999999876 Q ss_pred CC-------------CCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCE Q ss_conf 24-------------542320002436999999985496651-8863210232678888775075323124312798751 Q gi|254780902|r 235 NQ-------------FDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKT 300 (412) Q Consensus 235 ~~-------------~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~ 300 (412) .+ ..+++|+++++++|++|||||++|++| ||||+|||||||||++|+++||||++||+|+|++ . T Consensus 265 ~e~~~~~~~~~~~~~~~~p~i~~~~~~vDa~~~~lv~~P~~FDViv~~NlfGDILSDlaa~l~GslGl~pSanig~~--~ 342 (427) T 3dms_A 265 AELIDGGPWMKFKNPKTGNEIVVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGANLSDS--V 342 (427) T ss_dssp CEESTTSSCEEEECTTTCCEEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCTTTCEEEEECSS--C T ss_pred HHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCC--C T ss_conf 66402343001357766786799970447999998539755657740343443113466652377531244556898--7 Q ss_pred EEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC Q ss_conf 44212222034556554248775547279999999999986302573038999999999999999879816323001578 Q gi|254780902|r 301 METEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGP 380 (412) Q Consensus 301 ~mfEp~HGSAPd~~g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~ 380 (412) +||||+|||||| |||||+| ||+|||||++|||+|+| +.++|++|++||.+++++|++|+||++.. + T Consensus 343 a~FEp~HGSAPd-----iAGk~iA-NP~a~IlS~amML~~lg-------~~~~A~~i~~AV~~vl~~G~~T~Dl~~~~-~ 408 (427) T 3dms_A 343 AMFEATHGTAPK-----YAGKDYV-NPGSEILSAEMMLRHLG-------WTEAADVIISAMEKSIKQKRVTYDFARLM-E 408 (427) T ss_dssp EEEEECSCCCGG-----GTTSSCS-CCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHTEECHHHHTTS-S T ss_pred EEEECCCCCCHH-----HCCCCCC-CHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCCCHHHCC-C T ss_conf 698789887234-----4799966-90999999999999779-------98999999999999997599440211036-8 Q ss_pred CCCCEEHHHHHHHHHHHHH Q ss_conf 8871309999999999999 Q gi|254780902|r 381 EQDWLSTTDFIEKISDNLR 399 (412) Q Consensus 381 ~~~~~~T~ef~daI~~~l~ 399 (412) ..|.++|+||+|||+++|+ T Consensus 409 ~gg~~sTse~~daVi~~le 427 (427) T 3dms_A 409 GATQVSCSGFGQVLIENME 427 (427) T ss_dssp SCEECCHHHHHHHHHHTTC T ss_pred CCCCCCHHHHHHHHHHHHC T ss_conf 9962179999999998429 No 14 >1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Probab=100.00 E-value=0 Score=721.13 Aligned_cols=364 Identities=19% Similarity=0.161 Sum_probs=308.3 Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCC-------CCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCC Q ss_conf 86799759863089999999998417-------99844899827489986528627789999998659388726448985 Q gi|254780902|r 8 KPVVSLDGDEMTRIIWQLIQENLIHP-------YLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQ 80 (412) Q Consensus 8 ~~Iv~l~GDgiG~Ei~~~~l~vl~~~-------~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~ 80 (412) ++|.+|||||||||||+++++||++. .++++|.++++|.++++++|+++|+++++++++++++||||+++|.+ T Consensus 36 p~IavIpGDGIGpEV~~~a~~VL~a~~~~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~t~~~i~~~da~l~Ga~~~P~~ 115 (435) T 1tyo_A 36 PVVAFIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWELLAGHLAREKCGELLPKATLEGIRLARVALKGPLETPVG 115 (435) T ss_dssp BEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCSHHHHHHHSSSSCHHHHHHHHHHSEEEECCCCCCTT T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCC T ss_conf 88999797864199999999999999988617888867999715466898659887799999998629799898879999 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCC-CCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECC Q ss_conf 44321124422110458989732966883058804878778-88778679985056663001014777884599999548 Q gi|254780902|r 81 ARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLI-PGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGD 159 (412) Q Consensus 81 ~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~-~~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~ 159 (412) . +++|+|++||+.||||+|+||+.+.+.|.+. ...++|+|||||||||+|+|+||....+....+.. T Consensus 116 ~---------~~~s~~l~LRk~ldlyaNvRP~r~~~~~~~~~~~~~iDivIVREntEG~Y~g~e~~~~~~~~~~~~~--- 183 (435) T 1tyo_A 116 T---------GYRSLNVAIRQALDLYANIRPVRYYGQPAPHKYADRVDMVIFRENTEDVYAGIEWPHDSPEAARIRR--- 183 (435) T ss_dssp S---------CTTHHHHHHHHHHTCCEEEEEEECCSCCCSBTTGGGCEEEEEEECSSSGGGCCEECTTSHHHHHHHH--- T ss_pred C---------CCCCCCHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEE--- T ss_conf 8---------9666058899875995987666325788775666778869995277775467665556755421020--- Q ss_pred CCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHHCCC--- Q ss_conf 88610255412466530101110514688999999999986599-89999742677751089999999998631002--- Q gi|254780902|r 160 DGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL-PLYLSTKDTILKSYDGRFKNIFNEIFEAEFKN--- 235 (412) Q Consensus 160 ~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~-kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~--- 235 (412) +...+. ...........++.+|+.+++|++|+||+||++|++ +||++||+|||+.|+|+|++|+++++.++|++ T Consensus 184 -~~~~~~-~~~~~~~~a~~~~~itr~~~~Ri~r~Af~~A~~r~rk~vt~v~KaNv~~~t~glf~~~~~eva~~~f~~~~~ 261 (435) T 1tyo_A 184 -FLAEEF-GISIREDAGIGVKPISRFATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKFREHVV 261 (435) T ss_dssp -HHHHHH-CCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEEECTTTSTTTHHHHHHHHHHHHHHHSGGGEE T ss_pred -CCHHHH-CEECCCCEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf -350330-331145405888997557789999998999986489808999588610010216999999999877533100 Q ss_pred -----------CCCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEE Q ss_conf -----------4542320002436999999985496651-8863210232678888775075323124312798751442 Q gi|254780902|r 236 -----------QFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMET 303 (412) Q Consensus 236 -----------~~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mf 303 (412) .+..++|+++|+|||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|++ ++|| T Consensus 262 ~~~~~~~~yp~v~~e~~I~~~~~~vD~~a~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GglGl~pSan~g~~--~a~f 339 (435) T 1tyo_A 262 TEQEVQEKYGGVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMAAGMNMGDG--IAVA 339 (435) T ss_dssp EHHHHHHHSTTCCCTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECSS--CEEE T ss_pred HHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCC--CEEE T ss_conf 25778875477675652489653677999998239644757985330367888999887447775567567998--2798 Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCC Q ss_conf 12222034556554248775547279999999999-98630257303899999999999999987981632300157888 Q gi|254780902|r 304 EAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGL-LHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQ 382 (412) Q Consensus 304 Ep~HGSAPd~~g~~iaGk~iA~NP~a~IlS~ammL-~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~ 382 (412) ||+|||||| |||||+| ||+|||||++||| +|+| +.++|++|++||.+++++|++|+|||+.. .+. T Consensus 340 EpvHGSAPd-----iaGk~iA-NPia~IlS~amML~~~lg-------~~~~A~~ie~Av~~vl~~g~~T~Dlgg~~-~~~ 405 (435) T 1tyo_A 340 EPVHGTAPK-----YAGKDLI-NPSAEILSASLLIGEFMG-------WREVKSIVEYAIRKAVQSKKVTQDLARHM-PGV 405 (435) T ss_dssp EESSCCCGG-----GTTSSCS-CCHHHHHHHHHHHHTTSC-------CHHHHHHHHHHHHHHHHTTCCBHHHHTTS-TTC T ss_pred ECCCCCCCC-----CCCCCCC-CHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCC T ss_conf 689887300-----0699853-919999999999998769-------88999999999999997699460006788-899 Q ss_pred CCEEHHHHHHHHHHHHHHH Q ss_conf 7130999999999999999 Q gi|254780902|r 383 DWLSTTDFIEKISDNLRDA 401 (412) Q Consensus 383 ~~~~T~ef~daI~~~l~~~ 401 (412) +.++|+||+|||+++|++. T Consensus 406 ~~~~T~e~~daVi~~l~~~ 424 (435) T 1tyo_A 406 QPLRTSEYTETLIAYIDEA 424 (435) T ss_dssp CCBCHHHHHHHHHHHHHHC T ss_pred CCCCHHHHHHHHHHHHHHH T ss_conf 8678899999999998775 No 15 >3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Probab=100.00 E-value=0 Score=715.99 Aligned_cols=346 Identities=16% Similarity=0.132 Sum_probs=305.6 Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCC----CCCCEEEEEEC-CHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCC Q ss_conf 386799759863089999999998417----99844899827-4899865286277899999986593887264489854 Q gi|254780902|r 7 TKPVVSLDGDEMTRIIWQLIQENLIHP----YLDIKIEYFDL-SIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQA 81 (412) Q Consensus 7 ~~~Iv~l~GDgiG~Ei~~~~l~vl~~~----~~~i~~e~~d~-G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~ 81 (412) +.+|++|||||||||||+++++||++. +++++|+++++ |.+.++++|+++|+++++++++++++||||+++|.+. T Consensus 5 ~~kI~vlpGDGIGpEV~~~a~~VL~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~lp~et~~~~~~~da~l~Gavg~p~~~ 84 (364) T 3flk_A 5 SFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVGWPDKV 84 (364) T ss_dssp CEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHSSSSCTTHHHHHTTSSEEEEEECCBTTTB T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEHHHHHCCCCCHHHHHHHHHCCCEEECCCCCCCCC T ss_conf 55899989775829999999999999997539974999997411102875098388999999995594266676799888 Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCC---CCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEE Q ss_conf 4321124422110458989732966883058-8048787788---87786799850566630010147778845999995 Q gi|254780902|r 82 RVKEFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIP---GWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFV 157 (412) Q Consensus 82 ~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~---~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~ 157 (412) . .+..++|+|+.||+.||||+|+||+ .+++++.+.+ ..++|++||||||||+|+|.++..... T Consensus 85 ~-----~~~~~~s~~l~LR~~ldLyaniRP~~~~p~~~~~~~~~~~~~vD~vivREnteG~Y~g~~~~~~~~-------- 151 (364) T 3flk_A 85 P-----DHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMFEN-------- 151 (364) T ss_dssp C-----HHHHHHTTHHHHHHHTTCCEEEEEEECCTTCCCSBTTCCTTSSEEEEEEECSSBTCCCCEEEESTT-------- T ss_pred C-----CCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC-------- T ss_conf 8-----776634507999997389478878603578776322466688519998002686403677522336-------- Q ss_pred CCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 4888610255412466530101110514688999999999986599-899997426777510899999999986310024 Q gi|254780902|r 158 GDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL-PLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQ 236 (412) Q Consensus 158 ~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~-kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~ 236 (412) ...+..+.++.+|+++++|++|+||+||++|+| +||++||+|||+.++++|++++++++++ T Consensus 152 -------------~~~~~~~~~~~~tr~~~eRiar~Af~~A~~~~rk~vt~v~KaNv~~~~~~~~~~~~~~va~~----- 213 (364) T 3flk_A 152 -------------TENEIVIQESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMAAH----- 213 (364) T ss_dssp -------------STTCEEEEEEEEEHHHHHHHHHHHHHHHHHSSSCEEEEEECTTTSTTHHHHHHHHHHHHHTT----- T ss_pred -------------CCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC----- T ss_conf -------------66412566534549999999999999999868987255674587402076899999986000----- Q ss_pred CCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCC-EEEECCCCCCHHHHH Q ss_conf 542320002436999999985496651-886321023267888877507532312431279875-144212222034556 Q gi|254780902|r 237 FDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGK-TMETEAAHGTVTRHY 314 (412) Q Consensus 237 ~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~-~~mfEp~HGSAPd~~ 314 (412) ||+++++|++||+++||||++|++| ||||+|||||||||++|+++||+|++||+|+|+++. .+||||+|||||| T Consensus 214 --~p~i~~~~~~vD~~~~~lv~~P~~fdViv~~Nl~GDIlSD~aa~l~G~lG~~psanig~~~~~~a~fEp~hGsapd-- 289 (364) T 3flk_A 214 --YPHVSWDKQHIDILCARFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAPD-- 289 (364) T ss_dssp --CTTCEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECTTCSSCEEEEESSCCCTT-- T ss_pred --CCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCHHH-- T ss_conf --3434322256999999985288645532466158889999999873874336756567664540341466777577-- Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEHHHHHHHH Q ss_conf 55424877554727999999999998630257303899999999999999987981632300157888713099999999 Q gi|254780902|r 315 RQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKI 394 (412) Q Consensus 315 g~~iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~T~ef~daI 394 (412) |||||+| ||+|||||++|||+|+|+.+ ..|.++|++|++||.+++++|++|+||| |.+||+||+||| T Consensus 290 ---iaGk~iA-NP~a~Ils~ammL~~lg~~~--~~~~~~a~~i~~Av~~~l~~G~~T~Dlg-------G~~sT~e~~dav 356 (364) T 3flk_A 290 ---IFGKNIA-NPIAMIWSGALMLEFLGQGD--ERYQRAHDDMLNAIERVIADGSVTPDMG-------GTLSTQQVGAAI 356 (364) T ss_dssp ---TTTSSCC-CCHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHTCCCGGGT-------CCCCHHHHHHHH T ss_pred ---HCCCCCC-CCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHCCCCCCCCC-------CCCCHHHHHHHH T ss_conf ---5799840-94999999999999838655--3579999999999999997699676469-------986899999999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254780902|r 395 SDNLRD 400 (412) Q Consensus 395 ~~~l~~ 400 (412) +++|++ T Consensus 357 ~~~l~~ 362 (364) T 3flk_A 357 SDTLAR 362 (364) T ss_dssp HHHHHT T ss_pred HHHHHC T ss_conf 999861 No 16 >1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Probab=100.00 E-value=0 Score=715.65 Aligned_cols=345 Identities=19% Similarity=0.153 Sum_probs=303.5 Q ss_pred CCCCCC---CEEEECCCCCCHHHHHHHHHHHHCC----CCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCC Q ss_conf 401138---6799759863089999999998417----998448998274899865286277899999986593887264 Q gi|254780902|r 3 KIKVTK---PVVSLDGDEMTRIIWQLIQENLIHP----YLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCAT 75 (412) Q Consensus 3 Kikm~~---~Iv~l~GDgiG~Ei~~~~l~vl~~~----~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~ 75 (412) ||.|.. +|++||||||||||++++++||.+. +++++|+++++|.++|++||+++|+++++++++++++||||+ T Consensus 5 ~~~~~~~~mkIavipGDGIGpEV~~~a~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~G~~lp~etl~~i~~~dail~Gai 84 (366) T 1vlc_A 5 KIHHHHHHMKIAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLEADAIFLGSV 84 (366) T ss_dssp CCCCCCSEEEEEEEEESTHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEEEEC T ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHEECC T ss_conf 32315653089998878867999999999999998870997899998456999997789897899999998548555422 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCCC------CCCCEEEEECCCCCCCCCCEEEECC Q ss_conf 4898544321124422110458989732966883058-80487877888------7786799850566630010147778 Q gi|254780902|r 76 ITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIPG------WKKPIIIGRHAFGDQYRATDFQFPS 148 (412) Q Consensus 76 ~tP~~~~~~~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~~------~~~divivREnteg~Y~gie~~~~~ 148 (412) ++|.+++++.. ..+.+|+|++||+.||+|+|+||+ .+++++...+. .++|+|||||||||+|+|.+..... T Consensus 85 g~p~~~~~~~~--~~~~~s~~~~LR~~ldlyanvRP~r~~~g~~~~~~~~~~~~~~~iD~vivREnteg~Y~g~~~~~~~ 162 (366) T 1vlc_A 85 GGPKWDDLPPE--KRPEIGGLLALRKMLNLYANIRPIKVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLDE 162 (366) T ss_dssp CCGGGTTSCST--TSHHHHTHHHHHHHTTCCEEEEEEECCGGGGGGSSSCHHHHTTCCEEEEEEECSSGGGTEEEEEECS T ss_pred CCCCCCCCCCC--CCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC T ss_conf 58886667755--5775551589999708658788653002347777776655577712899703667865566777888 Q ss_pred CCEEEEEEECCCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHH Q ss_conf 84599999548886102554124665301011105146889999999999865998999974267775108999999999 Q gi|254780902|r 149 KGKLILKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEI 228 (412) Q Consensus 149 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~ev 228 (412) + .+..+.++|+.+++||+|+||+||++|++|||++||+|||+ ++++|+++++|+ T Consensus 163 ~-------------------------~a~~~~~~tr~~~~Ria~~Af~~A~~~~k~Vt~v~KaNv~~-~~~lf~~~~~ev 216 (366) T 1vlc_A 163 E-------------------------KGFDTMIYDRKTVERIARTAFEIAKNRRKKVTSVDKANVLY-SSMLWRKVVNEV 216 (366) T ss_dssp S-------------------------CEEEECCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHH T ss_pred C-------------------------EEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-CCHHHHHHHHHH T ss_conf 5-------------------------18998995689999999999999986799479994477644-338899999999 Q ss_pred HHHHCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCC Q ss_conf 86310024542320002436999999985496651-88632102326788887750753231243127987514421222 Q gi|254780902|r 229 FEAEFKNQFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAH 307 (412) Q Consensus 229 a~~~~~~~~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~H 307 (412) +++ ||+|+++++|||++|||||++|++| ||||+|||||||||++|+++||+|++||+|+|++ .||||+| T Consensus 217 a~~-------yp~I~~~~~~vD~~~~~lv~~P~~fdViv~~Nl~GDIlSDlaa~l~GglGl~ps~nig~~---~~fEp~H 286 (366) T 1vlc_A 217 ARE-------YPDVELTHIYVDNAAMQLILKPSQFDVILTTNMFGDILSDESAALPGSLGLLPSASFGDK---NLYEPAG 286 (366) T ss_dssp HTT-------CTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHTTSSSCGGGCEEEEESSS---EEEEESS T ss_pred HHH-------CCCEEEEEEEHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCC---EEECCCC T ss_conf 977-------898089986398999998639754778855443301788899986387423554424865---2210266 Q ss_pred CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEE Q ss_conf 203455655424877554727999999999998-6302573038999999999999999879816323001578887130 Q gi|254780902|r 308 GTVTRHYRQHQQGKETSTNSIASIFAWTRGLLH-RAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLS 386 (412) Q Consensus 308 GSAPd~~g~~iaGk~iA~NP~a~IlS~ammL~h-lg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~ 386 (412) ||||| |||||+| ||+|||||++|||+| +| +.++|++|++||.+++++|++|+||++. ..+.++ T Consensus 287 GSApd-----iaGk~ia-NP~a~Ils~ammL~h~lg-------~~~~A~~i~~Av~~~l~~g~~T~Dl~~~---~~~~~~ 350 (366) T 1vlc_A 287 GSAPD-----IAGKNIA-NPIAQILSLAMMLEHSFG-------MVEEARKIERAVELVIEEGYRTRDIAED---PEKAVS 350 (366) T ss_dssp CCCTT-----TTTTTCS-CCHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHTTCCCGGGCSS---GGGCCC T ss_pred CCHHH-----HCCCCCC-CCHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCCCCCCCCCCC---CCCCCC T ss_conf 87124-----2699864-939999999999875469-------8799999999999999859956232569---999777 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999999 Q gi|254780902|r 387 TTDFIEKISDNLRDA 401 (412) Q Consensus 387 T~ef~daI~~~l~~~ 401 (412) |+||+|||+++|++. T Consensus 351 T~e~~~av~~~l~~l 365 (366) T 1vlc_A 351 TSQMGDLICKKLEEI 365 (366) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999975 No 17 >1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Probab=100.00 E-value=0 Score=715.79 Aligned_cols=343 Identities=18% Similarity=0.182 Sum_probs=299.0 Q ss_pred CEEEECCCCCCHHHHHHHHHHHHC----CCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCC Q ss_conf 679975986308999999999841----7998448998274899865286277899999986593887264489854432 Q gi|254780902|r 9 PVVSLDGDEMTRIIWQLIQENLIH----PYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVK 84 (412) Q Consensus 9 ~Iv~l~GDgiG~Ei~~~~l~vl~~----~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~ 84 (412) +|++|||||||||||++++++|++ .+++++|+++++|+++|+++|+++|+++++++++++++||||+++|.|+..+ T Consensus 3 kI~vipGDGIGpEV~~a~~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~et~~~i~~~da~l~Gav~~p~~~~~~ 82 (358) T 1a05_A 3 KIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAMAADAVILGAVGGPRWDAYP 82 (358) T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCHHHHHHHHSSSSCHHHHHHHHHCSEEEEEECCCGGGTTSC T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEHHHHHCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCC T ss_conf 89998978887999999999999998870997699999625142544099388999999997152257030588877879 Q ss_pred CCCCCCCCCCHHHHHHHHCCCEEEEEEE-EECCCC--CCCCC---CCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEEC Q ss_conf 1124422110458989732966883058-804878--77888---77867998505666300101477788459999954 Q gi|254780902|r 85 EFNLKKMWKSPNGTIRNILGGIIFREPI-ICSNVP--RLIPG---WKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVG 158 (412) Q Consensus 85 ~~~l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p--~~~~~---~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~ 158 (412) ... ..+|+|++|||.||||+|+||+ .+++++ .+..+ .++|+|||||||||+|+|.++...... T Consensus 83 ~~~---~~~~~~l~lR~~ldlyanvRP~k~~pg~~~~spl~~~~~~~iD~vivREnteg~Y~g~~~~~~~~~-------- 151 (358) T 1a05_A 83 PAK---RPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLRPELVRDVDILVVRELTGDIYFGQPRGLEVID-------- 151 (358) T ss_dssp GGG---SHHHHHHHHHHHHTCCEEEEEEECCTTSGGGCSBCHHHHTTCEEEEEEECSSSTTTCSSCEEEEET-------- T ss_pred CCC---CCCCHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEECCC-------- T ss_conf 766---776322688886696698778741477667888777776896089980277865477224344478-------- Q ss_pred CCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 88861025541246653010111051468899999999998659989999742677751089999999998631002454 Q gi|254780902|r 159 DDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFD 238 (412) Q Consensus 159 ~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~ 238 (412) + ......++.+|+.+++||+|+||++|++|+++||++||+||||.++ +|+++++|++++ T Consensus 152 --~-----------~~~a~~~~~~t~~~~~ri~~~Af~~a~~~~k~Vt~v~KaNv~~~~~-lf~~~~~eva~~------- 210 (358) T 1a05_A 152 --G-----------KRRGFNTMVYDEDEIRRIAHVAFRAAQGRRKQLCSVDKANVLETTR-LWREVVTEVARD------- 210 (358) T ss_dssp --T-----------EEEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHH-HHHHHHHHHGGG------- T ss_pred --C-----------CEEEEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH-HHHHHHHHHHCC------- T ss_conf --8-----------4699999997389999999999999982798178985330123478-999999999653------- Q ss_pred CCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHH Q ss_conf 2320002436999999985496651-886321023267888877507532312431279875144212222034556554 Q gi|254780902|r 239 ELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQH 317 (412) Q Consensus 239 ~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~ 317 (412) ||+|++++++||++|||||++|++| ||||+|||||||||++|+++||||++||+|+|++ ++||||+|||||| T Consensus 211 yp~i~~~~~~vD~~~~~lv~~P~~fdViv~~Nl~GDIlSD~~a~l~GglG~~psanig~~--~a~fEp~hGsapd----- 283 (358) T 1a05_A 211 YPDVRLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLGEG--RAMYEPIHGSAPD----- 283 (358) T ss_dssp CTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEEECSS--CEEEEESSCCCGG----- T ss_pred CCCEEEEEEHHHHHHHHHHHCHHHCCEEEECCHHHHHHHHHHHHHCCCCCCCCCEEECCC--CCCCCCCCCCCHH----- T ss_conf 896699971388999998739144778875406788999999885389766541020687--4223456786443----- Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEHHHHHHHHHHH Q ss_conf 24877554727999999999998630257303899999999999999987981632300157888713099999999999 Q gi|254780902|r 318 QQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKISDN 397 (412) Q Consensus 318 iaGk~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~T~ef~daI~~~ 397 (412) |||||+| ||+|||||++|||+|++ .++++|++|++||.+|+++|++|+|||+. ....++|+||+|||+++ T Consensus 284 iaGk~~a-NP~a~Ils~ammL~~~~------g~~~~A~~i~~Av~~~l~~g~~T~Dlgg~---~~~~~~T~~~~~aI~~~ 353 (358) T 1a05_A 284 IAGQDKA-NPLATILSVAMMLRHSL------NAEPWAQRVEAAVQRVLDQGLRTADIAAP---GTPVIGTKAMGAAVVNA 353 (358) T ss_dssp GTTTTCS-CCHHHHHHHHHHHHHTS------SCHHHHHHHHHHHHHHHHTTCCCGGGCCT---TSCCCCHHHHHHHHHHT T ss_pred HCCCCCC-CCHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHCCCCCCCCCCC---CCCCCCHHHHHHHHHHH T ss_conf 3699865-93999999999997427------98699999999999999769957355999---99877899999999998 Q ss_pred HHH Q ss_conf 999 Q gi|254780902|r 398 LRD 400 (412) Q Consensus 398 l~~ 400 (412) |+. T Consensus 354 l~~ 356 (358) T 1a05_A 354 LNL 356 (358) T ss_dssp TTC T ss_pred HCC T ss_conf 635 No 18 >1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Probab=100.00 E-value=0 Score=704.22 Aligned_cols=327 Identities=18% Similarity=0.204 Sum_probs=297.3 Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCC----CCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCC Q ss_conf 86799759863089999999998417----99844899827489986528627789999998659388726448985443 Q gi|254780902|r 8 KPVVSLDGDEMTRIIWQLIQENLIHP----YLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARV 83 (412) Q Consensus 8 ~~Iv~l~GDgiG~Ei~~~~l~vl~~~----~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~ 83 (412) .+|++|||||||||||+++++||.+. .++|+|+++++|.++|++||+++|+++++++++++++||||+++|. T Consensus 2 y~IavipGDGIGpEV~~~~~~Vl~a~~~~~~~~ie~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~l~G~~~~~~---- 77 (336) T 1wpw_A 2 FTVALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIIDKADIILKGPVGESA---- 77 (336) T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHHHHTTCCEEEEEECCSHHHHHHSSSSSCHHHHHHHHTCSEEEECCCCTTH---- T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCC---- T ss_conf 7899978886219999999999999998709987999981658999986991899999999862806974546545---- Q ss_pred CCCCCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCCC-CCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCCC Q ss_conf 21124422110458989732966883058804878778887-78679985056663001014777884599999548886 Q gi|254780902|r 84 KEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPGW-KKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQ 162 (412) Q Consensus 84 ~~~~l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~~~~-~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~g~ 162 (412) .|+|+.||+.||||+|+||. +.+|+..+++ ++||+||||||||+|+|.++....+.... T Consensus 78 ---------~~~~l~lR~~ldLyanvRP~--k~~pg~~~~~~~iDivIvREnteG~Y~g~~~~~~~~~~~~--------- 137 (336) T 1wpw_A 78 ---------ADVVVKLRQIYDMYANIRPA--KSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVSDGVAVG--------- 137 (336) T ss_dssp ---------HHHHHHHHHTTTCCEEEEEE--ECCTTTCCSCSCCEEEEEEECSSBTTTCCEEEEETTEEEE--------- T ss_pred ---------CCHHHHHHHHCCCCEEEEEE--ECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEE--------- T ss_conf ---------66468999972873420254--3258988878996889994277775567534554312689--------- Q ss_pred CEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE Q ss_conf 10255412466530101110514688999999999986599899997426777510899999999986310024542320 Q gi|254780902|r 163 TIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGI 242 (412) Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i 242 (412) ++.+|+.+++||+|+||+||++|++|||++||+|||+.++++|++++++++ +++| T Consensus 138 ----------------~~~~tr~~~eRIar~Af~~A~~r~~~vt~v~KaNvl~~~~~~~~~~~~~~~---------~~~i 192 (336) T 1wpw_A 138 ----------------MKIITRFASERIAKVGLNFALRRRKKVTCVHKANVMRITDGLFAEACRSVL---------KGKV 192 (336) T ss_dssp ----------------EEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCTTHHHHHHHHHHHHH---------TTTS T ss_pred ----------------EEEEEEHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCHHHEEEEEEE---------CEEE T ss_conf ----------------999861456499999999999729926999777534001330310012121---------1058 Q ss_pred EHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCC Q ss_conf 002436999999985496651-8863210232678888775075323124312798751442122220345565542487 Q gi|254780902|r 243 TYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGK 321 (412) Q Consensus 243 ~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk 321 (412) ++++++||+++||||++|++| ||||+|||||||||++|+++||+|++||+|+|++ .+||||+|||||| |||| T Consensus 193 ~~~~~~vD~~~~~lv~~P~~fdViv~~Nl~GDIlSD~~a~l~G~lGl~ps~nig~~--~a~fEp~hGsapd-----iaGk 265 (336) T 1wpw_A 193 EYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSANIGDK--KALFEPVHGAAFD-----IAGK 265 (336) T ss_dssp EEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECSS--CEEEEESSCCCTT-----TTTS T ss_pred EEEEEEHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCEECCC--CEEEECCCCCCHH-----HCCC T ss_conf 98534477999999758986657975428787888999998613466654121898--5563034445511-----2699 Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHCCCCCCCCEEHHHHHHHHHHHH Q ss_conf 75547279999999999986302573038999999999999999879-816323001578887130999999999999 Q gi|254780902|r 322 ETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDG-FMTKDLALLIGPEQDWLSTTDFIEKISDNL 398 (412) Q Consensus 322 ~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G-~~T~DLg~~~~~~~~~~~T~ef~daI~~~l 398 (412) |+| ||+|||||++|||+|+|+.+.+..+.++|++|++||.+++.+| .+|+||| |.+||+||+|||+++| T Consensus 266 ~ia-NP~a~Ils~ammL~~lg~~~~~~~~~~~a~~i~~Av~~~~~~~~~~T~DlG-------G~~sT~e~~dai~~~L 335 (336) T 1wpw_A 266 NIG-NPTAFLLSVSMMYERMYELSNDDRYIKASRALENAIYLVYKERKALTPDVG-------GNATTDDLINEIYNKL 335 (336) T ss_dssp SCC-CTHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHCSSCCGGGT-------CCCCHHHHHHHHHHSC T ss_pred CCC-CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-------CCCCHHHHHHHHHHHC T ss_conf 860-809999999999998576653156999999999999999863994377669-------9954999999999732 No 19 >1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, structural genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Probab=100.00 E-value=0 Score=706.93 Aligned_cols=331 Identities=18% Similarity=0.158 Sum_probs=295.6 Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCC Q ss_conf 67997598630899999999984179984489982748998652862778999999865938872644898544321124 Q gi|254780902|r 9 PVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKEFNL 88 (412) Q Consensus 9 ~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~~~~l 88 (412) +|++|||||||||||+++++||++...+++|+++++|+++|++||+++|+++++++++++++||||+++|.++. T Consensus 3 kI~vipGDGIGpEV~~~~~~Vl~a~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~G~vg~p~~~~------ 76 (337) T 1w0d_A 3 KLAIIAGDGIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDAILLGAIGDPSVPS------ 76 (337) T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHSTTCEEEECCCSHHHHHHHSCSSCHHHHHHHTTSSEEEEEECCCTTSCT------ T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCC------ T ss_conf 89997888753999999999999860686699996305208853993759999999858949878879998998------ Q ss_pred CCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCC-CCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCCCCEEE Q ss_conf 422110458989732966883058-8048787788-87786799850566630010147778845999995488861025 Q gi|254780902|r 89 KKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIP-GWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEK 166 (412) Q Consensus 89 ~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~-~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~g~~~~~ 166 (412) +.+.+|+|+.||+.||+|+|+||+ .++++|.+.+ .+++|+|||||||||+|+|.++....+. T Consensus 77 ~~~~~~~~l~LR~~ldlyaniRP~r~~~g~~~~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~---------------- 140 (337) T 1w0d_A 77 GVLERGLLLRLRFELDHHINLRPARLYPGVASPLSGNPGIDFVVVREGTEGPYTGNGGAIRVGT---------------- 140 (337) T ss_dssp THHHHHTHHHHHHHTTCCEEEEEEECCTTCCCSBTTCCCCEEEEEEECSCSGGGCCEEEESTTS---------------- T ss_pred CCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEECCC---------------- T ss_conf 8766466589999708761466521368888844577898789871025562005786032589---------------- Q ss_pred EEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHH Q ss_conf 54124665301011105146889999999999865998999974267775108999999999863100245423200024 Q gi|254780902|r 167 EVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYTH 246 (412) Q Consensus 167 ~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i~~~~ 246 (412) ..+.+..++.+|+.+++||+|+||+||++|+++||++||+||||.|||+|+++++|++++ ||+|+++| T Consensus 141 -----~~e~a~~~~~~t~~~~~RIar~Afe~A~~rrk~vt~v~Kanv~~~t~glf~~~~~eva~~-------yp~i~~~~ 208 (337) T 1w0d_A 141 -----PNEVATEVSVNTAFGVRRVVADAFERARRRRKHLTLVHKTNVLTFAGGLWLRTVDEVGEC-------YPDVEVAY 208 (337) T ss_dssp -----TTCEEEEEEEEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTSHHHHHHHHHHHHHHHTT-------CTTSEEEE T ss_pred -----CCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHH-------CCCCEEHH T ss_conf -----873599986132677767789999999848995699968872145779999999998865-------78734115 Q ss_pred HHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCC-EEEECCCCCCHHHHHHHHHCCCCCC Q ss_conf 36999999985496651-886321023267888877507532312431279875-1442122220345565542487755 Q gi|254780902|r 247 RLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGK-TMETEAAHGTVTRHYRQHQQGKETS 324 (412) Q Consensus 247 ~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~-~~mfEp~HGSAPd~~g~~iaGk~iA 324 (412) ++||+++||||++|++| ||||+|||||||||++|+++||+|++||+|+|+++. .+||||+|||||| |||||+| T Consensus 209 ~~vD~~~~~lv~~P~~fdViv~~Nl~GDilSDlaa~l~GglGl~psan~g~~~~~~a~fEp~HGsapd-----iaGk~ia 283 (337) T 1w0d_A 209 QHVDAATIHMITDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATRANPSMFEPVHGSAPD-----IAGQGIA 283 (337) T ss_dssp EEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECTTCSSCEEEEESSCCCGG-----GTTSSCS T ss_pred HHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCHH-----HCCCCCC T ss_conf 75879999862598537679875156788999998861865325666667431331000356665054-----4699964 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEHHHHHHHHHHHH Q ss_conf 47279999999999986302573038999999999999999879816323001578887130999999999999 Q gi|254780902|r 325 TNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKISDNL 398 (412) Q Consensus 325 ~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~T~ef~daI~~~l 398 (412) ||+|||||++|||+||| +.++|++|++||.+++.++. + +.++|+||+|||+++| T Consensus 284 -NP~a~ils~ammL~~lg-------~~~~a~~i~~Av~~~l~~~~-----~-------~~~~T~d~gdav~~~l 337 (337) T 1w0d_A 284 -DPTAAIMSVALLLSHLG-------EHDAAARVDRAVEAHLATRG-----S-------ERLATSDVGERIAAAL 337 (337) T ss_dssp -CCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHCT-----T-------CCCCHHHHHHHHHHTC T ss_pred -CCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHCC-----C-------CCCCHHHHHHHHHHCC T ss_conf -95999999999999859-------97899999999999997359-----9-------9778399999999649 No 20 >1g2u_A IPMDH, 3-isopropylmalate dehydrogenase; beta-barrel, NAD binding, oxidoreductase; 2.10A {Thermus thermophilus HB8} SCOP: c.77.1.1 PDB: 1osj_A 1gc8_A 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1gc9_A 1ipd_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Probab=100.00 E-value=0 Score=694.55 Aligned_cols=331 Identities=18% Similarity=0.172 Sum_probs=293.2 Q ss_pred CEEEECCCCCCHHHHHHHHHHHHC----CCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCC Q ss_conf 679975986308999999999841----7998448998274899865286277899999986593887264489854432 Q gi|254780902|r 9 PVVSLDGDEMTRIIWQLIQENLIH----PYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVK 84 (412) Q Consensus 9 ~Iv~l~GDgiG~Ei~~~~l~vl~~----~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~ 84 (412) +|++|||||||||||+++++||++ .+++++|+++++|.++++++|+++|+++++++++++++||||++||.|+..+ T Consensus 2 kIavipGDGIGpEv~~~~~~Vl~a~~~~~~~~ie~~~~~~G~~~~~~~G~~lp~~t~~~i~~~da~l~Ga~~~p~~~~~~ 81 (345) T 1g2u_A 2 KVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDGLP 81 (345) T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHHHCCCCEEEECCCTHHHHHHHSSSSCHHHHHHHHHCSEEEEEECCCGGGTTSC T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 89998878778999999999999999862998699999834412886599188999999997407660676798768888 Q ss_pred CCCCCCCCCCHHHHHHHHCCCEEEEEEEE-ECCCCCCCC-----CCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEEC Q ss_conf 11244221104589897329668830588-048787788-----877867998505666300101477788459999954 Q gi|254780902|r 85 EFNLKKMWKSPNGTIRNILGGIIFREPII-CSNVPRLIP-----GWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVG 158 (412) Q Consensus 85 ~~~l~~~~~S~n~~LR~~ldl~~~~rp~~-~~~~p~~~~-----~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~ 158 (412) .. ....|.++.||+.||||+|+||+. +++++...+ ..++|++||||||||+|+|.++....+ T Consensus 82 ~~---~~~~~~~~~lR~~ldl~anvrp~~~~~~~~~~~p~~~~~~~~id~vivREnteg~Y~g~~~~~~~~--------- 149 (345) T 1g2u_A 82 RK---IRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEA--------- 149 (345) T ss_dssp GG---GCHHHHHHHHHHHTTEEEEEEEEECCTTCGGGSSSCHHHHTTCEEEEEEECSCSTTTCSSCEECSS--------- T ss_pred CC---CCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCCC--------- T ss_conf 55---575321366898725211244332147765468876566677406998745786205764221022--------- Q ss_pred CCCCCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 88861025541246653010111051468899999999998659989999742677751089999999998631002454 Q gi|254780902|r 159 DDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFD 238 (412) Q Consensus 159 ~~g~~~~~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~ 238 (412) .++.++.+|+.+++||+|+||+||++|+++||++||+||||.++ +|+++++|++++ T Consensus 150 ----------------~a~~~~~~tr~~~eRi~r~Af~~A~~~~k~Vt~v~KaNv~~~~~-~~~~~~~eva~~------- 205 (345) T 1g2u_A 150 ----------------EAWNTERYSKPEVERVARVAFEVARKRRKHVVSVDKANVLEVGE-FWRKTVEEVGRG------- 205 (345) T ss_dssp ----------------CEECCCCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHHH-HHHHHHHHHHTT------- T ss_pred ----------------CCCCEEEECHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCH-HHHHHHHHHHCC------- T ss_conf ----------------12561687399999999999999997599457752656555545-788999998542------- Q ss_pred CCCEEHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHH Q ss_conf 2320002436999999985496651-886321023267888877507532312431279875144212222034556554 Q gi|254780902|r 239 ELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQH 317 (412) Q Consensus 239 ~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~ 317 (412) ||+|+++|++||+++||||++|++| ||||+|||||||||++|+++||+|++||+|+|++ ++||||+|||||| T Consensus 206 yp~i~~~~~~vD~~~~~lv~~P~~fdViv~~Nl~GDIlSDl~a~l~GglGl~~s~nig~~--~a~fEp~HGsApd----- 278 (345) T 1g2u_A 206 YPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRG--TPVFEPVHGSAPD----- 278 (345) T ss_dssp CTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTSCGGGCEEEEEESS--CCEEEESSCCCGG----- T ss_pred CCCEEEEEHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCCCCCCCHHH----- T ss_conf 897589850376999986128765785531416788999999986278666664203787--3312434564445----- Q ss_pred HCCCCCCCCHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCEEHHHHHHHHHH Q ss_conf 24877554727999999999998-63025730389999999999999998798163230015788871309999999999 Q gi|254780902|r 318 QQGKETSTNSIASIFAWTRGLLH-RAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKISD 396 (412) Q Consensus 318 iaGk~iA~NP~a~IlS~ammL~h-lg~~~~~~~~~~~A~~i~~Av~~~l~~G~~T~DLg~~~~~~~~~~~T~ef~daI~~ 396 (412) |||||+| ||+|||||++|||+| +| ++++|++|++||.++++++ +|+||| |.+||+||+|+|++ T Consensus 279 iaGk~ia-NP~a~Ils~ammL~~~lg-------~~~~a~~i~~Av~~~l~~~-~T~DlG-------G~a~T~e~~~aii~ 342 (345) T 1g2u_A 279 IAGKGIA-NPTAAILSAAMMLEHAFG-------LVELARKVEDAVAKALLET-PPPDLG-------GSAGTEAFTATVLR 342 (345) T ss_dssp GTTSSCC-CCHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHS-CCGGGT-------CCCCHHHHHHHHHH T ss_pred CCCCCCC-CCHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHCC-CCCCCC-------CCCCHHHHHHHHHH T ss_conf 0799864-969999999999974179-------8799999999999999648-996569-------99679999999999 Q ss_pred HH Q ss_conf 99 Q gi|254780902|r 397 NL 398 (412) Q Consensus 397 ~l 398 (412) +| T Consensus 343 ~l 344 (345) T 1g2u_A 343 HL 344 (345) T ss_dssp HC T ss_pred HH T ss_conf 64 No 21 >3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Probab=100.00 E-value=0 Score=683.43 Aligned_cols=325 Identities=23% Similarity=0.234 Sum_probs=290.8 Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCC Q ss_conf 86799759863089999999998417998448998274899865286277899999986593887264489854432112 Q gi|254780902|r 8 KPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKEFN 87 (412) Q Consensus 8 ~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~~~~ 87 (412) ++|++|||||||||||+++++++.+..++|+|+++++| +.+.++|+.+|+++++++++++++||||+++|.+ T Consensus 22 y~I~vlpGDGIGpEV~~~~~~vl~~~~~~i~~~~~~~g-~~~~~~g~~~p~~~~~~~~~~~~~l~G~~~~p~~------- 93 (354) T 3blx_B 22 YTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVS-PIFVNGLTTIPDPAVQSITKNLVALKGPLATPIG------- 93 (354) T ss_dssp EECBCCCCSTTHHHHHHHHHHHHHTTTCSEECCCCCCC-CEEETTEEECCHHHHHHHHHHSEEEECCCCCC--------- T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECEE-HHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC------- T ss_conf 89999887656799999999999965998359995600-7975789858979999999737524788778641------- Q ss_pred CCCCCCCHHHHHHHHCCCEEEEEEE-EECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCCCCEEE Q ss_conf 4422110458989732966883058-804878778887786799850566630010147778845999995488861025 Q gi|254780902|r 88 LKKMWKSPNGTIRNILGGIIFREPI-ICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEK 166 (412) Q Consensus 88 l~~~~~S~n~~LR~~ldl~~~~rp~-~~~~~p~~~~~~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~g~~~~~ 166 (412) .+.+|+|+.||++||||+|+||. .+++++.. ..++|++||||||||+|+|.++....+... T Consensus 94 --~~~~~~~l~LR~~ldlyanlRP~~~~~g~~~~--~~~iD~vivREnteG~Y~g~~~~~~~~~~~-------------- 155 (354) T 3blx_B 94 --KGHRSLNLTLRKTFGLFANVRPAKSIEGFKTT--YENVDLVLIRENTEGEYSGIEHIVCPGVVQ-------------- 155 (354) T ss_dssp ----CCCHHHHHHHHHTEEEEEEEEECCTTCCCS--SCSCEEEEEEECSSEEEEEEEEECSTTEEE-------------- T ss_pred --CCCCCCCHHHHHHCCCCEEEEEEEECCCCCCC--CCCCCEEEEHHCCCCCCCCCCCCCCCCCCE-------------- T ss_conf --13334114479875991745778855886454--456776887310378756755545541211-------------- Q ss_pred EEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCC-CCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHH Q ss_conf 541246653010111051468899999999998659-9899997426777510899999999986310024542320002 Q gi|254780902|r 167 EVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQ-LPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYT 245 (412) Q Consensus 167 ~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~-~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i~~~ 245 (412) .+..+|+.+++||+|+||++|++|+ ++||++||+|||+.++|+||++++|++++ ||+|+++ T Consensus 156 -----------~~~~~Tr~~~eRI~r~AFe~Ar~~~rkkvt~v~Kanv~~~s~glf~~~~~eva~e-------ypdi~~~ 217 (354) T 3blx_B 156 -----------SIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTIQRLADGLFVNVAKELSKE-------YPDLTLE 217 (354) T ss_dssp -----------EEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEESCTTTCHHHHHHHHHHHHHGGG-------CTTSEEE T ss_pred -----------EEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHH-------CCCCCCH T ss_conf -----------3357861168899999899999738997337862553013089999999999987-------6876210 Q ss_pred HHHHHHHHHHHHCCCCCE---EEEECCCCCHHHHHHHHHH-HCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCC Q ss_conf 436999999985496651---8863210232678888775-075323124312798751442122220345565542487 Q gi|254780902|r 246 HRLIDDMVASSIKWSGGY---IWACKNYDGDVQSDIVAQG-FGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGK 321 (412) Q Consensus 246 ~~~vD~~~~~lv~~P~~f---Vivt~NL~GDIlSD~aa~l-~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk 321 (412) |++||+++||||++|++| ||||+|||||||||++|++ .||+|++||+|+|++ .+||||+|||||| |||| T Consensus 218 ~~~vD~~a~~lv~~P~~fD~~Viv~~NlfGDIlSDl~a~l~~G~~g~~~s~~~g~~--~~~fEp~HGSApd-----iaGk 290 (354) T 3blx_B 218 TELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGLSAGSLGLTPSANIGHK--ISIFEAVHGSAPD-----IAGQ 290 (354) T ss_dssp EEEHHHHHHHHHHCGGGGTTEEEEECHHHHHHHHHHHHHHHTSSGGGCEEEEEESS--CEEEEECSCCCGG-----GTTT T ss_pred HHEEHHHHHHHHCCHHHHCCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCCCHH-----HCCC T ss_conf 20241677775029877265345324046788888876512675443444333333--2224777776254-----3699 Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHCCCCCCCCEEHHHHHHHHHHHH Q ss_conf 75547279999999999986302573038999999999999999879--816323001578887130999999999999 Q gi|254780902|r 322 ETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDG--FMTKDLALLIGPEQDWLSTTDFIEKISDNL 398 (412) Q Consensus 322 ~iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G--~~T~DLg~~~~~~~~~~~T~ef~daI~~~l 398 (412) |+| ||+|||||++|||||+| +.++|++|++||.+++++| ++|+||| |.+||+||+|||+++| T Consensus 291 ~ia-NP~a~IlS~amML~~lg-------~~~~a~~i~~Av~~~l~~G~~~~T~Dlg-------G~~~T~e~~davi~~l 354 (354) T 3blx_B 291 DKA-NPTALLLSSVMMLNHMG-------LTNHADQIQNAVLSTIASGPENRTGDLA-------GTATTSSFTEAVIKRL 354 (354) T ss_dssp TCC-CTHHHHHHHHHHHHHHT-------CHHHHHHHHHTHHHHHTSSTTSSCGGGT-------CCCCHHHHHHHHHHTC T ss_pred CCC-CCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHCCCCCCCCCC-------CCCCHHHHHHHHHHCC T ss_conf 863-91999999999999879-------9789999999999999848875185559-------9965999999999669 No 22 >3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Probab=100.00 E-value=0 Score=674.57 Aligned_cols=327 Identities=19% Similarity=0.208 Sum_probs=288.8 Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCC Q ss_conf 38679975986308999999999841799844899827489986528627789999998659388726448985443211 Q gi|254780902|r 7 TKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKEF 86 (412) Q Consensus 7 ~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~~~ 86 (412) +.+|++||||||||||+++++++|++..++++|++++++...+. ..+.++++++++++++++|+..+|.. T Consensus 17 ~y~IavLpGDGIGpEV~~a~~~Vl~a~~~~i~~~~~~~~~~~~~----~~~~e~~~~~~~~~~~~~g~~~~~~~------ 86 (349) T 3blx_A 17 RFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQTDHK----EGVYEAVESLKRNKIGLKGLWHTPAD------ 86 (349) T ss_dssp CEEEEEEEESHHHHHHHHHHHHHHHHTTCSEEEEECCCSSTTCH----HHHHHHHHHHHHHSEEEEEECCSHHH------ T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC----CCCHHHHHHHHHCCCCCCCCCCCCCC------ T ss_conf 75999989760189999999999995799978599635677676----45188999986038616577778644------ Q ss_pred CCCCCCCCHHHHHHHHCCCEEEEEEEEECCCCCCCCC-CCCCEEEEECCCCCCCCCCEEEECCCCEEEEEEECCCCCCEE Q ss_conf 2442211045898973296688305880487877888-778679985056663001014777884599999548886102 Q gi|254780902|r 87 NLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPG-WKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIE 165 (412) Q Consensus 87 ~l~~~~~S~n~~LR~~ldl~~~~rp~~~~~~p~~~~~-~~~divivREnteg~Y~gie~~~~~~~~~~i~~~~~~g~~~~ 165 (412) ...++|+|+.||+.||||+|+|| ++.+|+..++ .++||+||||||||+|+|.++....+.. T Consensus 87 --~~~~~s~~l~LRk~ldLyanvRP--~k~~~g~~~~~~~iDivIvREnteG~Y~g~~~~~~~~~~-------------- 148 (349) T 3blx_A 87 --QTGHGSLNVALRKQLDIYANVAL--FKSLKGVKTRIPDIDLIVIRENTEGEFSGLEHESVPGVV-------------- 148 (349) T ss_dssp --HHTCHHHHHHHHHTSCEEEEEEE--EECCTTCCCSSCSCEEEEEEECSSGGGGCEEEECSTTEE-------------- T ss_pred --CCCCCCCCHHHHHHCCCCCCEEE--ECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC-------------- T ss_conf --66654510465887388704464--520056555678977799860568500685243442001-------------- Q ss_pred EEEECCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEH Q ss_conf 55412466530101110514688999999999986599-89999742677751089999999998631002454232000 Q gi|254780902|r 166 KEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQL-PLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITY 244 (412) Q Consensus 166 ~~~~~~~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~-kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i~~ 244 (412) ..++.+|+.+++||+|+||++|++|++ +||++||+|||+.++|+|+++++++++++|++ |++ T Consensus 149 -----------~~~~~~tr~~~eRiar~AFe~A~~r~~k~vt~v~KaNvl~~s~glf~~~~~e~a~~~yp~------v~~ 211 (349) T 3blx_A 149 -----------ESLKVMTRPKTERIARFAFDFAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEYPD------IDV 211 (349) T ss_dssp -----------EEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTHHHHHHHHHHHHHHHHCTT------SEE T ss_pred -----------CCEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCC------CHH T ss_conf -----------122576499999999999999886289863799757765234203999999998742885------112 Q ss_pred HHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECC-CCCCHHHHHHHHHCCCC Q ss_conf 2436999999985496651-886321023267888877507532312431279875144212-22203455655424877 Q gi|254780902|r 245 THRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEA-AHGTVTRHYRQHQQGKE 322 (412) Q Consensus 245 ~~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp-~HGSAPd~~g~~iaGk~ 322 (412) ++++||+++||||++|++| ||||+|||||||||++|+++||||++||+|+|++ .++||| +|||||| ||||| T Consensus 212 ~~~~vD~~~~~lv~~P~~fdVIv~~Nl~GDIlSD~~a~l~G~lGl~psanig~~--~~~fep~~hGsapd-----iaG~~ 284 (349) T 3blx_A 212 SSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGGPGLVAGANFGRD--YAVFEPGSRHVGLD-----IKGQN 284 (349) T ss_dssp EEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEEESS--CEEECCTTTTSCC-------CCTT T ss_pred HHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CEEEEECCCCCCHH-----HCCCC T ss_conf 366688999886238766647764225688999999875078777874446887--51254456655422-----34898 Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHCCCCCCCCEEHHHHHHHHHHHHHH Q ss_conf 55472799999999999863025730389999999999999998798-1632300157888713099999999999999 Q gi|254780902|r 323 TSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGF-MTKDLALLIGPEQDWLSTTDFIEKISDNLRD 400 (412) Q Consensus 323 iA~NP~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~-~T~DLg~~~~~~~~~~~T~ef~daI~~~l~~ 400 (412) +| ||+|||||++|||+|+|+ .++|++|++||.+++++|. +|+||| |.+||+||+|+|+++|++ T Consensus 285 ia-NP~a~ils~ammL~~lg~-------~~~a~~i~~Av~~~l~~g~~~T~Dlg-------G~~~t~e~~~aii~~l~~ 348 (349) T 3blx_A 285 VA-NPTAMILSSTLMLNHLGL-------NEYATRISKAVHETIAEGKHTTRDIG-------GSSSTTDFTNEIINKLST 348 (349) T ss_dssp CS-CCHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHSSSSCBGGGT-------CCBCHHHHHHHHHHHHHT T ss_pred CC-CCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHCCCCCCCCCC-------CCCCHHHHHHHHHHHHHH T ss_conf 51-949999999999998799-------89999999999999983990451028-------887399999999999963 No 23 >1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A* Probab=99.83 E-value=3.2e-17 Score=125.46 Aligned_cols=310 Identities=15% Similarity=0.130 Sum_probs=207.0 Q ss_pred CCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHH------HHHHHCCC Q ss_conf 179984489982748998652862778999999865938872644898544321124422110458------98973296 Q gi|254780902|r 32 HPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKSPNG------TIRNILGG 105 (412) Q Consensus 32 ~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~~~~l~~~~~S~n~------~LR~~ldl 105 (412) +.+-++-....|-|..+..--.+-+.|..+-++-+.+--.-||-+.+..... .++- +|--. .--+.-+ T Consensus 324 ~~~P~lAMVdSdkGITNLHVPsDVIIDASMPAmIR~~GkmW~~dG~~~Dtka---vIPD--~sYA~vYq~~I~~ck~~G- 397 (741) T 1itw_A 324 AQRPQLAMVNSDKGITNLHVPSDVIVDASMPAMIRDSGKMWGPDGKLHDTKA---VIPD--RCYAGVYQVVIEDCKQHG- 397 (741) T ss_dssp HHSCCBCEEETTTTEETTTCTTTSBHHHHHHHHHHTTTEEECTTSSEEEEEE---ECCS--HHHHHHHHHHHHHHHHHC- T ss_pred HHCCHHHHCCCCCCCCCCCCCCCEEEECCCHHHHHCCCCCCCCCCCCCCCEE---ECCC--CCHHHHHHHHHHHHHHCC- T ss_conf 7294143133455744456886546746628987556651289999210247---4467--404889999999999729- Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCE--EEECCCCEEEEEEECCCCCCEEEEEECCCCCCEEEEEECC Q ss_conf 68830588048787788877867998505666300101--4777884599999548886102554124665301011105 Q gi|254780902|r 106 IIFREPIICSNVPRLIPGWKKPIIIGRHAFGDQYRATD--FQFPSKGKLILKFVGDDGQTIEKEVFDSPGSGIAMAMYNL 183 (412) Q Consensus 106 ~~~~rp~~~~~~p~~~~~~~~divivREnteg~Y~gie--~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~t 183 (412) + ..|... +. ++-|=.=-.-..+|++.+ |.+..+|+..+ ...+|. ....+.....++|..+... T Consensus 398 -a-fDPttm----Gs-----V~NVGLMAqKAEEYGSHdkTFe~~~~G~v~v--v~~~G~--vl~eh~Ve~gDIwR~cq~k 462 (741) T 1itw_A 398 -A-FDPTTM----GS-----VPNVGLMAQKAEEYGSHDKTFQIPADGVVRV--TDESGK--LLLEQSVEAGDIWRMCQAK 462 (741) T ss_dssp -S-CCTTTC----CC-----CCEEECCTTTCGGGGCGGGEEECSSSEEEEE--EETTCC--EEEEEEECTTCEEEEEEEC T ss_pred -C-CCCCCC----CC-----CCCHHHHCCCHHHCCCCCCCEECCCCEEEEE--ECCCCC--EEEEEEECCCCEEEEECCC T ss_conf -9-994012----34-----6721643368154088887554379908999--918997--9999886168866530476 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHH-HHHHHH--HHHHHCCC Q ss_conf 146889999999999865998999974267775108999999999863100245423200024-369999--99985496 Q gi|254780902|r 184 DDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYTH-RLIDDM--VASSIKWS 260 (412) Q Consensus 184 ~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i~~~~-~~vD~~--~~~lv~~P 260 (412) +..|+.|++.|++.|+..+.++++-.+.|-- ....+..++-.... +.+-.++.++- -.++++ .+.-++++ T Consensus 463 d~~I~dWvkLav~Ra~~t~~pavFWLd~~Ra-hd~~li~kV~~yL~------~~dt~gldi~Im~p~~A~~~sl~r~~~G 535 (741) T 1itw_A 463 DAPIQDWVKLAVNRARATNTPAVFWLDPARA-HDAQVIAKVERYLK------DYDTSGLDIRILSPVEATRFSLARIREG 535 (741) T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECCTTSH-HHHHHHHHHHHHHT------TSCCTTCCEEEECHHHHHHHHHHHHHTT T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEECCCCC-CHHHHHHHHHHHHH------HCCCCCCCEEEECHHHHHHHHHHHHHCC T ss_conf 1679999999999999868965998666535-29999999999987------4599888537658999999999998659 Q ss_pred CCEEEEECCCCCHHHHHHHHHH-HCCCCCCEEEECCCCCCEEEEC-CCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH Q ss_conf 6518863210232678888775-0753231243127987514421-2222034556554248775547279999999999 Q gi|254780902|r 261 GGYIWACKNYDGDVQSDIVAQG-FGSLGLMTSVLITADGKTMETE-AAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGL 338 (412) Q Consensus 261 ~~fVivt~NL~GDIlSD~aa~l-~GglGlapSanig~~~~~~mfE-p~HGSAPd~~g~~iaGk~iA~NP~a~IlS~ammL 338 (412) ++.+.||.|+.+|||||+...| .|+.+.+-|.-...+| .+||| +.+||||+|+.|-+..--+.|++++.+|+++--| T Consensus 536 ~dtIsvtGNVLRDYLTDLFPILElGTSAKMLSIVpLm~G-GgLFETGAGGSAPKhvqQ~~~E~hLRWDSLGEflAla~SL 614 (741) T 1itw_A 536 KDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMSG-GGLFETGAGGSAPKHVQQFLEEGYLRWDSLGEFLALAASL 614 (741) T ss_dssp CCCEEEECHHHHHHHHHHHHHHHHSCSSSSEEEEEBTTS-CEEEESCSSCCCHHHHHHHHHHSCCCCCCHHHHHHHHHHH T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCHHHHHHHEEEECCC-CEEEECCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHH T ss_conf 984876430078777645555324316535432565158-7146249999705999999762840136189899999999 Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 98630257303899999999999999987981 Q gi|254780902|r 339 LHRAKLDENAELKKFAENLERVCIKTVEDGFM 370 (412) Q Consensus 339 ~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~ 370 (412) +|+++..+|++....|+.|+.|+.+.|++++- T Consensus 615 e~la~~~~N~ka~vla~~Ld~At~~~L~~~ks 646 (741) T 1itw_A 615 EHLGNAYKNPKALVLASTLDQATGKILDNNKS 646 (741) T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCS T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99986248937899999999999999856999 No 24 >2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} Probab=99.54 E-value=5.5e-11 Score=86.53 Aligned_cols=321 Identities=17% Similarity=0.163 Sum_probs=197.7 Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHH-- Q ss_conf 899999999984179984489982748998652862778999999865938872644898544321124422110458-- Q gi|254780902|r 20 RIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKSPNG-- 97 (412) Q Consensus 20 ~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~d~tg~~l~~da~eaik~~~v~lkg~~~tP~~~~~~~~~l~~~~~S~n~-- 97 (412) .||-..+..++ +.+-++-...-|-|..+..--.+-+.|..+-++-|.+--.-||-+...... .+-+. +|--. T Consensus 309 ~~I~adi~~~~-~~~P~lAMVdSdkGITNLHVPSDVIIDASMPAmIR~~GkmW~~dG~~~Dtk----avIPD-~sYA~iY 382 (738) T 2b0t_A 309 EEIKAAFEKGL-EDGPDLAMVNSARGITNLHVPSDVIVDASMPAMIRTSGHMWNKDDQEQDTL----AIIPD-SSYAGVY 382 (738) T ss_dssp HHHHHHHHHHH-HHSCCBCEEEGGGTEETTTCTTTSBHHHHHHHHHHTTTEEECTTSCEEEEE----EECSS-HHHHHHH T ss_pred HHHHHHHHHHH-HCCCCEEEEECCCCCCCCCCCCCEEEECCCHHHHHHCCCEECCCCCCCCCE----EECCC-CHHHHHH T ss_conf 56999999998-619974776157784356688655672675899983062389998815433----85465-3137899 Q ss_pred ----HHHHHCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCE--EEECCCCEEEEEEECCCCCCEEEEEECC Q ss_conf ----9897329668830588048787788877867998505666300101--4777884599999548886102554124 Q gi|254780902|r 98 ----TIRNILGGIIFREPIICSNVPRLIPGWKKPIIIGRHAFGDQYRATD--FQFPSKGKLILKFVGDDGQTIEKEVFDS 171 (412) Q Consensus 98 ----~LR~~ldl~~~~rp~~~~~~p~~~~~~~~divivREnteg~Y~gie--~~~~~~~~~~i~~~~~~g~~~~~~~~~~ 171 (412) ..-+.-+ + ..|...-++| . |=.=-.---+|+..+ |.+...|+. .++.++|. ....+.. T Consensus 383 q~~I~~ck~~G--a-fDPttmGsV~----N-----VGLMAqKAEEYGSHdkTFe~~~~G~v--~vv~~~G~--vl~eh~V 446 (738) T 2b0t_A 383 QTVIEDCRKNG--A-FDPTTMGTVP----N-----VGLMAQKAEEYGSHDKTFRIEADGVV--QVVSSNGD--VLIEHDV 446 (738) T ss_dssp HHHHHHHHHHC--S-CCTTTCCCCC----E-----EECCTTTCGGGGCGGGEEECCSSEEE--EEECTTSC--EEEEEEE T ss_pred HHHHHHHHHCC--C-CCCHHCCCCC----C-----HHHHCCCHHHHCCCCCCEECCCCCEE--EEEECCCC--EEEEEEE T ss_conf 99999999749--9-8940115777----6-----16530275863888863544899669--99979998--9999876 Q ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHH-HHHH Q ss_conf 665301011105146889999999999865998999974267775108999999999863100245423200024-3699 Q gi|254780902|r 172 PGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYTH-RLID 250 (412) Q Consensus 172 ~~~~~~~~~~~t~~~i~Riar~AF~~A~~~~~kvt~v~KaNVlk~tdglf~~~~~eva~~~~~~~~~~~~i~~~~-~~vD 250 (412) ....+|..+.....+|+.|++.|...|+..+.+..+--..|-- -|.-..+-+..-.++ .+-.+++.+- -.++ T Consensus 447 e~GDIwR~cq~kd~pi~dWvkLav~Rar~t~~pavFWLd~~Ra--Hd~~li~kv~~yL~~-----~dt~gl~i~im~p~~ 519 (738) T 2b0t_A 447 EANDIWRACQVKDAPIQDWVKLAVTRSRLSGMPAVFWLDPERA--HDRNLASLVEKYLAD-----HDTEGLDIQILSPVE 519 (738) T ss_dssp CTTCEEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEECCTTCH--HHHHHHHHHHHHHTT-----SCCTTCCEEEECHHH T ss_pred CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCC--CHHHHHHHHHHHHHH-----CCCCCCCEEEECHHH T ss_conf 4765166753356069999999999988619966896078886--319999999999986-----488898527518999 Q ss_pred HHHHHH--HCCCCCEEEEECCCCCHHHHHHHHHH-HCCCCCCEEEECCCCCCEEEECC-CCCCHHHHHHHHHCCCCCCCC Q ss_conf 999998--54966518863210232678888775-07532312431279875144212-222034556554248775547 Q gi|254780902|r 251 DMVASS--IKWSGGYIWACKNYDGDVQSDIVAQG-FGSLGLMTSVLITADGKTMETEA-AHGTVTRHYRQHQQGKETSTN 326 (412) Q Consensus 251 ~~~~~l--v~~P~~fVivt~NL~GDIlSD~aa~l-~GglGlapSanig~~~~~~mfEp-~HGSAPd~~g~~iaGk~iA~N 326 (412) ++-.-| +++-+.-+-||.|...|||+|+..-| .|.-.-+-|.---..| .+|||- ..||||+|+-|-+.---+.|. T Consensus 520 A~~~tl~r~~~G~dtIsvTGNVLRDYLTDLFPIlElGTSAKMLSIVPLm~G-GglfETGAGGSAPKhVqQ~~~EnhLRWD 598 (738) T 2b0t_A 520 ATQLSIDRIRRGEDTISVTGNVLRDYNTDLFPILELGTSAKMLSVVPLMAG-GGLFETGAGGSAPKHVQQVQEENHLRWD 598 (738) T ss_dssp HHHHHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSSCEEEEEBTTS-CEEEECCSSCCCHHHHHHHHHHSCCCCC T ss_pred HHHHHHHHHHCCCCEEEEECHHHHHHHCCHHHHHHCCCCCCHHEEEEECCC-CCEEECCCCCCCCHHHHHHHHCCCCCHH T ss_conf 999999999758983886214677654111235330343102011132147-8323248888861899999872754223 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 27999999999998630257303899999999999999987981 Q gi|254780902|r 327 SIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFM 370 (412) Q Consensus 327 P~a~IlS~ammL~hlg~~~~~~~~~~~A~~i~~Av~~~l~~G~~ 370 (412) .++-.|+.+--|+|+++..++.+....|+.+..|+.+.|++++- T Consensus 599 SLGEFlAL~~Sle~la~~~~n~ka~vLa~~Ld~A~~~~L~~~ks 642 (738) T 2b0t_A 599 SLGEFLALAESFRHELNNNGNTKAGVLADALDKATEKLLNEEKS 642 (738) T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCS T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 37779999987999986438858899999999999999856999 No 25 >1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural genomics, PSI; 2.01A {Pseudomonas aeruginosa} Probab=97.30 E-value=8.9e-05 Score=47.73 Aligned_cols=81 Identities=15% Similarity=0.017 Sum_probs=56.9 Q ss_pred HHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCC Q ss_conf 36999999985496651-88632102326788887750753231243127987514421222203455655424877554 Q gi|254780902|r 247 RLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETST 325 (412) Q Consensus 247 ~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~ 325 (412) .-.|.+..+-. -.+| ++++ || -|++-.-.-.+++-.++|+.-.-.+----|-||||.| |||||+| T Consensus 243 ~paDt~F~~~~--~~~~D~vva--mY----HDQglip~K~~~f~~~VnvtlGLp~irtS~dHGTa~d-----iag~~~A- 308 (328) T 1yxo_A 243 LPADTLFTPKH--LEHCDAVLA--MY----HDQGLPVLKYKGFGAAVNVTLGLPIIRTSVDHGTALD-----LAGSGRI- 308 (328) T ss_dssp ECHHHHTSHHH--HTTCSEEEE--SS----HHHHHHHHHHHHTTSCEEEEESSSSCEEEECSCCCGG-----GTTTCCC- T ss_pred CCHHHHHHHHC--CCCCCEEEE--EC----CCCCCHHHHHCCCCCCEEEECCCCEEEECCCCCCHHH-----HCCCCCC- T ss_conf 88378887500--578758997--02----1012314542156653799648996676799883365-----5078989- Q ss_pred CHHHHHHHHHHHHHHH Q ss_conf 7279999999999986 Q gi|254780902|r 326 NSIASIFAWTRGLLHR 341 (412) Q Consensus 326 NP~a~IlS~ammL~hl 341 (412) ||.+|+-|.-+..+-. T Consensus 309 ~~~s~~~Ai~~a~~~~ 324 (328) T 1yxo_A 309 DSGSLQVALETAYQMA 324 (328) T ss_dssp CCHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHH T ss_conf 9699999999999999 No 26 >3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD- dependent, metal-binding, NAD, NADP, oxidoreductase, pyridoxine biosynthesis; HET: SUC; 1.70A {Yersinia pestis} PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A Probab=96.48 E-value=0.0021 Score=39.18 Aligned_cols=81 Identities=16% Similarity=0.004 Sum_probs=57.1 Q ss_pred HHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCC Q ss_conf 36999999985496651-88632102326788887750753231243127987514421222203455655424877554 Q gi|254780902|r 247 RLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETST 325 (412) Q Consensus 247 ~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~ 325 (412) .-.|.+..+-.+ .+| ++|+ || -|.+-.-.-.+++-.+.|+.-.=.+----|-||||-| |||||+| T Consensus 248 ~paDt~F~~~~~--~~~D~vva--mY----HDQglip~K~l~f~~~VnvtlGLp~iRtSpdHGTA~d-----Iagkg~A- 313 (334) T 3lxy_A 248 LPADTLFQPKYL--QHADAVLA--MY----HDQGLPVLKYQGFGRAVNITLGLPFIRTSVDHGTALE-----LAATGTA- 313 (334) T ss_dssp ECHHHHTSHHHH--TTCSEEEE--SS----HHHHHHHHHHHHTTCCEEEEESSSSCEEEESSCCCGG-----GTTTTCS- T ss_pred CCHHHHHHHHCC--CCCCEEEE--CC----CCCCCHHHHHCCCCCCEEEECCCCEEEECCCCCCHHH-----HHCCCCC- T ss_conf 480788654001--57999997--76----4652043422157766799738995687899871666-----6178989- Q ss_pred CHHHHHHHHHHHHHHH Q ss_conf 7279999999999986 Q gi|254780902|r 326 NSIASIFAWTRGLLHR 341 (412) Q Consensus 326 NP~a~IlS~ammL~hl 341 (412) ||.+|+-|.-+..+.. T Consensus 314 ~~~s~~~Ai~~a~~~~ 329 (334) T 3lxy_A 314 DVGSFITALNLAIKMI 329 (334) T ss_dssp CCHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHH T ss_conf 9799999999999999 No 27 >2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural genomics, PSI-2; 2.30A {Salmonella typhimurium LT2} Probab=96.20 E-value=0.0035 Score=37.80 Aligned_cols=80 Identities=20% Similarity=0.129 Sum_probs=58.4 Q ss_pred HHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCC Q ss_conf 436999999985496651-8863210232678888775075323124312798751442122220345565542487755 Q gi|254780902|r 246 HRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETS 324 (412) Q Consensus 246 ~~~vD~~~~~lv~~P~~f-Vivt~NL~GDIlSD~aa~l~GglGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA 324 (412) ..-.|.+..+-. -++| ++++ || -|++-.-.-.+++--++|+.-.=.+----|-||||-| |||||+| T Consensus 248 P~paDt~F~~~~--~~~~D~vla--MY----HDQglip~K~l~f~~~Vn~TlGLp~iRtSpdHGTa~d-----iagk~~a 314 (330) T 2hi1_A 248 PCPPDTVFLQAY--EGQYDMVVA--MY----HDQGHIPLKLLGFYDGVNITAGLPFIRTSADHGTAFD-----IAWTGKA 314 (330) T ss_dssp EECHHHHHHHHH--TTSCSEEEE--SS----HHHHHHHHHHCC-CCSEEEEETSSSEEEEESCCCCTT-----TTTTTCC T ss_pred CCCCHHHHHHHC--CCCCCEEEE--CC----CCCCHHHHHHCCCCCCEEEECCCCEEEECCCCCCHHH-----HHCCCCC T ss_conf 988037888742--369999997--76----4641164653357877799669993577899871666-----6168989 Q ss_pred CCHHHHHHHHHHHHH Q ss_conf 472799999999999 Q gi|254780902|r 325 TNSIASIFAWTRGLL 339 (412) Q Consensus 325 ~NP~a~IlS~ammL~ 339 (412) ||.+|+-|.-+..+ T Consensus 315 -~~~s~~~Ai~~a~~ 328 (330) T 2hi1_A 315 -KSESMAVSIKLAMQ 328 (330) T ss_dssp -CCHHHHHHHHHHHH T ss_pred -CHHHHHHHHHHHHH T ss_conf -86999999999998 No 28 >2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur subunit; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A Probab=62.12 E-value=2.2 Score=20.36 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=23.1 Q ss_pred CCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCH Q ss_conf 323124312798751442122220345565542487755472 Q gi|254780902|r 286 LGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNS 327 (412) Q Consensus 286 lGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~NP 327 (412) ||-.|..+.+.+. ..+|-|+|||--| ++|+-++ +| T Consensus 86 lGC~~~~~~~~~~-~~f~CPCHgs~fD-----~~Grv~~-GP 120 (141) T 2nwf_A 86 LGCVPIGGVSGDF-GGWFCPCHGSHWD-----SAGRIRK-GP 120 (141) T ss_dssp TCCCCEEEEETTT-TEEEETTTTEEEC-----TTSCEEE-SS T ss_pred CCCCCCCCCCCCC-CEEECCCCCCEEC-----CCCCEEC-CC T ss_conf 7861335457752-4047168699898-----9998964-89 No 29 >1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1 Probab=54.53 E-value=3.2 Score=19.28 Aligned_cols=34 Identities=15% Similarity=0.053 Sum_probs=21.5 Q ss_pred CCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCH Q ss_conf 323124312798751442122220345565542487755472 Q gi|254780902|r 286 LGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNS 327 (412) Q Consensus 286 lGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~NP 327 (412) ||-.|+.+-+.. ...|-|+|||--| .+|+-++ .| T Consensus 75 lGC~~~~~~~~~--~~f~CPCHgs~fd-----~~G~v~~-GP 108 (129) T 1rie_A 75 LGCVPIANAGDF--GGYYCPCHGSHYD-----ASGRIRK-GP 108 (129) T ss_dssp TSCCCEETCTTT--EEEEETTTTEEEE-----TTCCEEE-SS T ss_pred CCEECCCCCCCC--CEEEEECCCCCCC-----CCCCEEC-CC T ss_conf 630522335768--8588747688598-----9998942-89 No 30 >3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E* Probab=53.62 E-value=3.8 Score=18.82 Aligned_cols=34 Identities=18% Similarity=0.062 Sum_probs=21.9 Q ss_pred CCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCH Q ss_conf 323124312798751442122220345565542487755472 Q gi|254780902|r 286 LGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNS 327 (412) Q Consensus 286 lGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~NP 327 (412) ||=.|+-+-+..+ ..|-|+|||.-| .+|+.++ .| T Consensus 132 LGC~v~~~~~~~~--~f~CPCHgs~fd-----~~G~v~~-GP 165 (185) T 3cx5_E 132 LGCVPIGEAGDFG--GWFCPCHGSHYD-----ISGRIRK-GP 165 (185) T ss_dssp TSCCCEEEETTTT--EEEETTTTEEEC-----TTCCEEE-SS T ss_pred CCCCCCCCCCCCC--EEEECCCCCCCC-----CCCCEEC-CC T ss_conf 7850565257788--247258787498-----9998804-99 No 31 >1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome B; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 1bcc_E* 2bcc_E* 3bcc_E* ... Probab=46.50 E-value=5.8 Score=17.68 Aligned_cols=33 Identities=18% Similarity=0.111 Sum_probs=19.2 Q ss_pred CCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCC Q ss_conf 32312431279875144212222034556554248 Q gi|254780902|r 286 LGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQG 320 (412) Q Consensus 286 lGlapSanig~~~~~~mfEp~HGSAPd~~g~~iaG 320 (412) ||-.|+.+-+..+ ..|-|+|||--|..|+.++| T Consensus 142 lgC~~~~~~~~~~--~~~CpCHgs~fd~~G~~~~g 174 (196) T 1pp9_E 142 LGCVPIANAGDFG--GYYCPCHGSHYDASGRIRKG 174 (196) T ss_dssp TSCCCEETCSTTS--SEEETTTTEEECTTCCEEES T ss_pred CCCCCCCCCCCCC--EEEECCCCCCCCCCCCEECC T ss_conf 8635444667688--57716989859999999148 No 32 >3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans} Probab=36.80 E-value=17 Score=14.73 Aligned_cols=81 Identities=14% Similarity=0.215 Sum_probs=45.4 Q ss_pred CCCCEEEECCC----CCCHHHHHHHHHHHHCCCCCCEEEEEECCH---HHHHHHCCCCCH---HHHHHHHHCCEEEECCC Q ss_conf 13867997598----630899999999984179984489982748---998652862778---99999986593887264 Q gi|254780902|r 6 VTKPVVSLDGD----EMTRIIWQLIQENLIHPYLDIKIEYFDLSI---QNRDLTDDQVTI---DAAHAIKNCGVGIKCAT 75 (412) Q Consensus 6 m~~~Iv~l~GD----giG~Ei~~~~l~vl~~~~~~i~~e~~d~G~---~~~d~tg~~l~~---da~eaik~~~v~lkg~~ 75 (412) |.|+|++|-|- +...-+.+.+.+.+.. +.+.+++++.. .+.+ .....++ +..+.++.+|+++++ T Consensus 1 MskKIl~i~GS~R~~s~t~~la~~~~~~l~~---~~ev~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~l~~aD~iI~~-- 74 (192) T 3fvw_A 1 MSKRILFIVGSFSEGSFNRQLAKKAETIIGD---RAQVSYLSYDRVPFFNQD-LETSVHPEVAHAREEVQEADAIWIF-- 74 (192) T ss_dssp --CEEEEEESCCSTTCHHHHHHHHHHHHHTT---SSEEEECCCSSCCCCCGG-GTTSCCHHHHHHHHHHHHCSEEEEE-- T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHCCC---CCEEEEEECCCCCCCCCC-CCCCCCHHHHHHHHHHHCCCCEEEE-- T ss_conf 9984999989999998799999999987579---977999867535668841-1237888999999999659958993-- Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHCC Q ss_conf 48985443211244221104589897329 Q gi|254780902|r 76 ITADQARVKEFNLKKMWKSPNGTIRNILG 104 (412) Q Consensus 76 ~tP~~~~~~~~~l~~~~~S~n~~LR~~ld 104 (412) ||.|- .+....|..-+| T Consensus 75 -sP~Y~-----------~~~~~~lK~~iD 91 (192) T 3fvw_A 75 -SPVYN-----------YAIPGPVKNLLD 91 (192) T ss_dssp -CCCBT-----------TBCCHHHHHHHH T ss_pred -CCHHC-----------CCCCHHHHHHHH T ss_conf -53123-----------457889999999 No 33 >1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A* Probab=32.23 E-value=20 Score=14.27 Aligned_cols=82 Identities=13% Similarity=0.039 Sum_probs=45.8 Q ss_pred CEEEECC----CC-CCHHHHHHHHHHHHCCCCCCEEEEEECCHHHH-----------HHHCCCCC----------HHHHH Q ss_conf 6799759----86-30899999999984179984489982748998-----------65286277----------89999 Q gi|254780902|r 9 PVVSLDG----DE-MTRIIWQLIQENLIHPYLDIKIEYFDLSIQNR-----------DLTDDQVT----------IDAAH 62 (412) Q Consensus 9 ~Iv~l~G----Dg-iG~Ei~~~~l~vl~~~~~~i~~e~~d~G~~~~-----------d~tg~~l~----------~da~e 62 (412) +|++|.| ++ ...-+.+..++.+.+.+.+.+.+..|+..... ........ ++-++ T Consensus 3 kiL~i~gS~r~~~S~s~~L~~~f~~~~~~~~~~~eV~~~DL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (201) T 1t5b_A 3 KVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELIA 82 (201) T ss_dssp EEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHHHH T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 28999778999868999999999999997598998999889889998779899841068743257788889999999999 Q ss_pred HHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC Q ss_conf 998659388726448985443211244221104589897329 Q gi|254780902|r 63 AIKNCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILG 104 (412) Q Consensus 63 aik~~~v~lkg~~~tP~~~~~~~~~l~~~~~S~n~~LR~~ld 104 (412) .++.+|+++++ +|-| |-+....|..-+| T Consensus 83 ~i~~AD~iV~~---~P~y-----------~~~~pa~lK~~iD 110 (201) T 1t5b_A 83 ELKAHDVIVIA---APMY-----------NFNIPTQLKNYFD 110 (201) T ss_dssp HHHHCSEEEEE---CCCB-----------TTBCCHHHHHHHH T ss_pred HHHHCCEEEEE---CCCC-----------CCCCCHHHHHHHH T ss_conf 99858908997---3761-----------5657899999999 No 34 >3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.97A {Archaeoglobus fulgidus} Probab=31.66 E-value=21 Score=14.21 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.1 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 4688999999999986599899997 Q gi|254780902|r 185 DSIRNFARAAMQYALARQLPLYLST 209 (412) Q Consensus 185 ~~i~Riar~AF~~A~~~~~kvt~v~ 209 (412) +.++|..++|.+.|+.++.+++.+| T Consensus 36 ~~s~~al~~A~~~A~~~~~~l~lvh 60 (155) T 3dlo_A 36 DRAERVLRFAAEEARLRGVPVYVVH 60 (155) T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEE T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 8999999999999998399699999 No 35 >3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ... Probab=27.93 E-value=7.7 Score=16.90 Aligned_cols=67 Identities=13% Similarity=0.159 Sum_probs=41.3 Q ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCE-EEEEECC-----HHHHHHHC-CCCCHHHHHHHHHCC Q ss_conf 7401138679975986308999999999841799844-8998274-----89986528-627789999998659 Q gi|254780902|r 2 KKIKVTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIK-IEYFDLS-----IQNRDLTD-DQVTIDAAHAIKNCG 68 (412) Q Consensus 2 ~Kikm~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~-~e~~d~G-----~~~~d~tg-~~l~~da~eaik~~~ 68 (412) +|++|.+++++|.=|++-+-...++++.+...++.|. ....-+. ...|..+. .+.-++-++-+...- T Consensus 2 ~~~~~E~Tl~iIKPDav~~~~~geIi~~i~~~Gf~Iv~~k~~~~~~~~~a~~~y~~~~~k~ff~~lv~~mtSGP 75 (146) T 3evo_A 2 KKAGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGP 75 (146) T ss_dssp ----CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTGGGTTSTTHHHHHHHHTSSC T ss_pred CCCCHHHHEEEECHHHHHCCCHHHHHHHHHHCCCEEEEEEEEHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCC T ss_conf 85673040457891354136799999999986998986520001529899999999712841888998735798 No 36 >3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} Probab=27.36 E-value=14 Score=15.23 Aligned_cols=36 Identities=14% Similarity=0.024 Sum_probs=26.6 Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 138679975986308999999999841799844899 Q gi|254780902|r 6 VTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEY 41 (412) Q Consensus 6 m~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i~~e~ 41 (412) |.|+|++|--||.-..=.-..+++|...++++++.. T Consensus 1 M~KkVavl~~~~~~~~e~~~~~~~f~~~g~~~~v~s 36 (175) T 3cne_A 1 MAKKVAVLAVNPVNGCGLFQYLEAFFENGISYKVFA 36 (175) T ss_dssp -CCEEEEEECSSBCHHHHHHHHHHHHHTTCEEEEEE T ss_pred CCCEEEEEECCCCEEHHHHHHHHHHHHCCCEEEEEE T ss_conf 996799994899484689999999997899299999 No 37 >2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii} Probab=26.61 E-value=25 Score=13.67 Aligned_cols=67 Identities=9% Similarity=-0.126 Sum_probs=31.9 Q ss_pred CCCEEEECC-CCCCHHHHHHHHHHHHCCCCCCEEEEE---ECC----HHHHHHHCCCCCHHHHHHHHHCCEEEECC Q ss_conf 386799759-863089999999998417998448998---274----89986528627789999998659388726 Q gi|254780902|r 7 TKPVVSLDG-DEMTRIIWQLIQENLIHPYLDIKIEYF---DLS----IQNRDLTDDQVTIDAAHAIKNCGVGIKCA 74 (412) Q Consensus 7 ~~~Iv~l~G-DgiG~Ei~~~~l~vl~~~~~~i~~e~~---d~G----~~~~d~tg~~l~~da~eaik~~~v~lkg~ 74 (412) +++|+++-+ -|-+..+.+++.+-+.+.+.+++.... +++ ..+....++ -++...+.++++|++++|. T Consensus 4 ~~kvliiy~S~GnT~~la~ai~~Ga~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~i~~AD~IilgS 78 (199) T 2zki_A 4 KPNILVLFYGYGSIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKD-IPEVTLDDMRWADGFAIGS 78 (199) T ss_dssp CCEEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTT-SCBCCHHHHHHCSEEEEEE T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCC-CCCCCHHHHHHCCEEEEEC T ss_conf 98699998183589999999999887649889999766667088886336553478-5306799998589789965 No 38 >1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 Probab=26.28 E-value=26 Score=13.63 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=23.7 Q ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCC Q ss_conf 740113867997598630899999999984179984 Q gi|254780902|r 2 KKIKVTKPVVSLDGDEMTRIIWQLIQENLIHPYLDI 37 (412) Q Consensus 2 ~Kikm~~~Iv~l~GDgiG~Ei~~~~l~vl~~~~~~i 37 (412) ++..|+|+|.+|-.||.-..=.-...++|...+.++ T Consensus 18 ~~~~M~kkVaill~dgf~~~E~~~p~~~l~~aG~~v 53 (193) T 1oi4_A 18 KKAGLSKKIAVLITDEFEDSEFTSPADEFRKAGHEV 53 (193) T ss_dssp TTTTCCCEEEEECCTTBCTHHHHHHHHHHHHTTCEE T ss_pred HHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEE T ss_conf 640898779999579762999999999999689989 No 39 >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} Probab=23.55 E-value=29 Score=13.31 Aligned_cols=21 Identities=29% Similarity=0.091 Sum_probs=12.7 Q ss_pred CCCCCHHHHHHHHHHHCCCCCCEEE Q ss_conf 2102326788887750753231243 Q gi|254780902|r 268 KNYDGDVQSDIVAQGFGSLGLMTSV 292 (412) Q Consensus 268 ~NL~GDIlSD~aa~l~GglGlapSa 292 (412) +|..+|+++ ++.||.|-+|+. T Consensus 301 ~n~L~~mmg----~lF~~~~~~~~~ 321 (336) T 3lpz_A 301 SNPLLDMMG----SLFGGGGGAPSK 321 (336) T ss_dssp CCHHHHHHH----HHHCCCC----- T ss_pred CCCHHHHHH----HHCCCCCCCCCC T ss_conf 980778988----741565457887 No 40 >1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A Probab=21.51 E-value=32 Score=13.06 Aligned_cols=37 Identities=22% Similarity=0.129 Sum_probs=22.3 Q ss_pred CCCCCCCCCEEEECC----CCCCHHHHHHH--HHHHHCCCCCCEE Q ss_conf 974011386799759----86308999999--9998417998448 Q gi|254780902|r 1 MKKIKVTKPVVSLDG----DEMTRIIWQLI--QENLIHPYLDIKI 39 (412) Q Consensus 1 m~Kikm~~~Iv~l~G----DgiG~Ei~~~~--l~vl~~~~~~i~~ 39 (412) |+.+.|+|-.++|.| ||. |..+.+ ++.|...++++++ T Consensus 1 m~~~~MKKvaviLsg~g~~DG~--E~~E~~~p~~~L~raG~~V~~ 43 (232) T 1vhq_A 1 MSLITMKKIGVILSGCGVYDGS--EIHEAVLTLLAISRSGAQAVC 43 (232) T ss_dssp -----CCEEEEECCSBSTTTSB--CHHHHHHHHHHHHHTTCEEEE T ss_pred CCCCCCCEEEEEECCCCCCCCH--HHHHHHHHHHHHHHCCCEEEE T ss_conf 9765667599996688787750--298999999999988997999 No 41 >2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur subunit; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix rieske; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* Probab=20.68 E-value=28 Score=13.42 Aligned_cols=34 Identities=15% Similarity=0.030 Sum_probs=20.0 Q ss_pred CCCEEEECCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCH Q ss_conf 23124312798751442122220345565542487755472 Q gi|254780902|r 287 GLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNS 327 (412) Q Consensus 287 GlapSanig~~~~~~mfEp~HGSAPd~~g~~iaGk~iA~NP 327 (412) |=.++.+.+.+. ..++=|+|||.-| ..|+.++ .| T Consensus 133 GC~v~~~~~~~~-~~~~CPCHgS~Fd-----~~G~vv~-GP 166 (187) T 2qjy_C 133 GCSPIGGVSGDF-GGWFCPCHGSHYD-----SAGRIRK-GP 166 (187) T ss_dssp SCCCEEEEETTT-TEEEETTTTEEEC-----TTSCEEE-SS T ss_pred CCCCCCCCCCCC-CEEECCCCCCEEC-----CCCCEEC-CC T ss_conf 971535357888-9687479999899-----9998835-99 No 42 >3keg_A FMN-dependent NADH-azoreductase 1; Y131F azoreductase, methyl RED, flavoprotein, oxidoreductase; HET: FMN MRE GOL; 2.10A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* Probab=20.64 E-value=33 Score=12.94 Aligned_cols=37 Identities=5% Similarity=0.187 Sum_probs=25.2 Q ss_pred CEEEE----CCCC-CCHHHHHHHHHHHHCCCCCCEEEEEECC Q ss_conf 67997----5986-3089999999998417998448998274 Q gi|254780902|r 9 PVVSL----DGDE-MTRIIWQLIQENLIHPYLDIKIEYFDLS 45 (412) Q Consensus 9 ~Iv~l----~GDg-iG~Ei~~~~l~vl~~~~~~i~~e~~d~G 45 (412) +|++| .+++ ...-+.+.+++-+.+.+-+.+.+..|+. T Consensus 3 kILvI~gspr~~~S~s~~l~~~~~~~~~~~~~~~ev~~~dL~ 44 (212) T 3keg_A 3 RILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVG 44 (212) T ss_dssp EEEEEECCSCSTTCHHHHHHHHHHHHHHHHSTTCEEEEEESS T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 599998389988778999999999999961999889999874 Done!