RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780902|ref|YP_003065315.1| isocitrate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (412 letters) >1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3inm_A* 2cmj_A* 2cmv_A* Length = 413 Score = 435 bits (1120), Expect = e-123 Identities = 257/411 (62%), Positives = 318/411 (77%), Gaps = 7/411 (1%) Query: 1 MKKIKVTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDA 60 ++IKV KPVV +DGDEMTRIIWQ I+E LI P++D++++YFDL + NRD T+DQVTID+ Sbjct: 2 DQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDS 61 Query: 61 AHAIKNCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRL 120 A A + V +KCATIT D+ARV+EF LKKMWKSPNGTIRNILGG +FREPIIC N+PRL Sbjct: 62 ALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRL 121 Query: 121 IPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEK-EVFDSPGSGIAMA 179 +PGW KPI IGRHA GDQY+ATDF G + F DG + ++ EV++ P G+ M Sbjct: 122 VPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMG 181 Query: 180 MYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDE 239 MYN D+SI FA + QYA+ ++ PLY+STK+TILK+YDGRFK+IF EIFE +K FD+ Sbjct: 182 MYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDK 241 Query: 240 LGITYTHRLIDDMVASSIKWSGGYIWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGK 299 I Y HRLIDDMVA +K SGG++WACKNYDGDVQSDI+AQGFGSLGLMTSVL+ DGK Sbjct: 242 YKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGK 301 Query: 300 TMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLER 359 T+E EAAHGTVTRHYR+HQ+G+ TSTN IASIFAWTRGL HR KLD N +L +FA+ LE+ Sbjct: 302 TIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEK 361 Query: 360 VCIKTVEDGFMTKDLALLIG------PEQDWLSTTDFIEKISDNLRDALQK 404 VC++TVE G MTKDLA I + +L+T+DF++ I NL AL + Sbjct: 362 VCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNLDRALGR 412 >2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Length = 427 Score = 418 bits (1076), Expect = e-118 Identities = 252/410 (61%), Positives = 317/410 (77%), Gaps = 6/410 (1%) Query: 1 MKKIKVTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDA 60 KIKV +PVV LDGDEMTRIIW I++ LI PYLD+ ++Y+DLS+++RD T D++T DA Sbjct: 16 FSKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDA 75 Query: 61 AHAIKNCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRL 120 A AIK GVGIKCATIT D+ARVKEFNL KMWKSPNGTIRNILGG +FREPI+ +PRL Sbjct: 76 AEAIKKYGVGIKCATITPDEARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRL 135 Query: 121 IPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKE---VFDSPGSGIA 177 +P W+KPIIIGRHA GDQY+ATD P G L L + D T + + V+D GSG+A Sbjct: 136 VPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSDPTTAQPQTLKVYDYKGSGVA 195 Query: 178 MAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQF 237 MAMYN D+SI FA ++ + A+ ++L L+LSTK+TILK YDGRFK+IF E++EA++K++F Sbjct: 196 MAMYNTDESIEGFAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKF 255 Query: 238 DELGITYTHRLIDDMVASSIKWSGGYIWACKNYDGDVQSDIVAQGFGSLGLMTSVLITAD 297 ++LGI Y HRLIDDMVA IK GG+I A KNYDGDVQSDIVAQGFGSLGLMTS+L+T D Sbjct: 256 EQLGIHYEHRLIDDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPD 315 Query: 298 GKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENL 357 GKT E+EAAHGTVTRHYR++Q+G+ETSTNSIASIFAW+RGLL R +LD L KFA L Sbjct: 316 GKTFESEAAHGTVTRHYRKYQKGEETSTNSIASIFAWSRGLLKRGELDNTPALCKFANIL 375 Query: 358 ERVCIKTV-EDGFMTKDLALLIGPEQD--WLSTTDFIEKISDNLRDALQK 404 E + TV +DG MTKDLAL G + +++T +F++ + L+ ++ Sbjct: 376 ESATLNTVQQDGIMTKDLALACGNNERSAYVTTEEFLDAVEKRLQKEIKS 425 >2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Length = 402 Score = 368 bits (945), Expect = e-102 Identities = 186/402 (46%), Positives = 268/402 (66%), Gaps = 2/402 (0%) Query: 3 KIKVTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAH 62 KI++ P+V LDGDEMTR++W LI++ L+ P++D++ EY+DL I+ RD T+DQ+TIDAA Sbjct: 2 KIQMKTPLVELDGDEMTRVLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAE 61 Query: 63 AIKNCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIP 122 AIK GVG+K ATIT +Q RV+E+ LK+ WKSPN T+R +L G +FR+PI+ N+ + Sbjct: 62 AIKKYGVGVKNATITPNQDRVEEYGLKEQWKSPNATVRAMLDGTVFRKPIMVKNIKPSVR 121 Query: 123 GWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKEVFDSPGSGIAMAMYN 182 W+KPI++GRHA+GD Y+ + + GKL + +G+ + + + I ++N Sbjct: 122 SWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVVTDKNGKETRQTIMEVDEPAIVQGIHN 181 Query: 183 LDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGI 242 SI +FARA +Y+L +++ + +TKDTI K YD RFK IF EIF E+K +F GI Sbjct: 182 TVASIGHFARACFEYSLDQKIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAAGI 241 Query: 243 TYTHRLIDDMVASSIKWSGGYIWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTME 302 Y + LIDD+VA +K GG +WACKNYDGDV SD+VA FGSL +M+SVL++ G Sbjct: 242 EYFYTLIDDVVARMMKTEGGMLWACKNYDGDVMSDMVASAFGSLAMMSSVLVSPYGYFEY 301 Query: 303 TEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCI 362 EAAHGTV RHY QH +G+ TSTN +A I+AWT L R +LD +L F ++LE + I Sbjct: 302 -EAAHGTVQRHYYQHLKGERTSTNPVALIYAWTGALRKRGELDGTPDLCAFCDSLEAITI 360 Query: 363 KTVEDGFMTKDLALLIGPEQD-WLSTTDFIEKISDNLRDALQ 403 + +E G+MT DLA + P L + +FI+++ L+ + Sbjct: 361 ECIESGYMTGDLARICEPAAIKVLDSIEFIDELGKRLQQLNK 402 >1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima MSB8} Length = 399 Score = 337 bits (864), Expect = 3e-93 Identities = 199/403 (49%), Positives = 278/403 (68%), Gaps = 5/403 (1%) Query: 1 MKKIKVTKPVVSLDGDEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDA 60 M+K+KV P+V LDGDEM R++W++I+E LI PYLDI++ YFDL I+ RD TDDQ+TI+A Sbjct: 1 MEKVKVKNPIVELDGDEMARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEA 60 Query: 61 AHAIKNCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRL 120 A AIK GVG+KCATIT D RVKE+NLKK WKSPN TIR L G +FR+PI+ NVP L Sbjct: 61 AKAIKKYGVGVKCATITPDAERVKEYNLKKAWKSPNATIRAYLDGTVFRKPIMVKNVPPL 120 Query: 121 IPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKEVFDSPGSGIAMAM 180 + WKKPIIIGRHA+GD Y A + + ++ L + +T+ F G+G+ MAM Sbjct: 121 VKRWKKPIIIGRHAYGDIYNAVEAKVEGPAEVELVVRNKENKTLLVHKF--EGNGVVMAM 178 Query: 181 YNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDEL 240 +NL+ SIR+FA++ + YA++ ++ ++ +TKDTI K Y FK+IF E + + K + ++ Sbjct: 179 HNLEKSIRSFAQSCINYAISEKVDIWFATKDTISKVYHAYFKDIFQEEVD-KRKEELEKA 237 Query: 241 GITYTHRLIDDMVASSIKWSGGYIWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKT 300 G+ Y + LIDD A ++ GG +WAC NY+GD+ SD++A GFGSLGLMTSVL++ DG Sbjct: 238 GVNYRYMLIDDAAAQILRSEGGMLWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDGVY 297 Query: 301 METEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERV 360 EAAHGTV RHY ++ +G++TSTN ASIFAWT + R +LD E+ +FA+ LE+ Sbjct: 298 EF-EAAHGTVRRHYYRYLKGEKTSTNPTASIFAWTGAIRKRGELDGTPEVCEFADKLEKA 356 Query: 361 CIKTVEDGFMTKDLALLIGPE-QDWLSTTDFIEKISDNLRDAL 402 I T+E G +TKDL P +++ +FI+++ NL L Sbjct: 357 VINTIESGVITKDLQPFTEPPIDKYVTLEEFIDEVKKNLEKLL 399 >1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Length = 423 Score = 182 bits (462), Expect = 2e-46 Identities = 55/402 (13%), Positives = 120/402 (29%), Gaps = 34/402 (8%) Query: 16 DEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCAT 75 + ++++ + E I + + + T + + + I+ + IK Sbjct: 36 NAASKVL-EAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDVIREYFIAIKGPL 94 Query: 76 ITADQARVKEFNLKKMWKSPNGTIRNI----------------LGGIIFREPIICSNVPR 119 T ++ N+ + +IFRE Sbjct: 95 TTPVGGGIRSLNVALRQELDLFVCLRPVRYFTGVPSPVKRPEDTDMVIFRENTEDIYAGI 154 Query: 120 LIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQT-IEKEVFDSPGSGIAM 178 + + ++ +FP + +K V ++G + + + D Sbjct: 155 EYAKGSEEVQKLISFLQNELNVNKIRFPETSGIGIKPVSEEGTSRLVRAAIDYAIEHGRK 214 Query: 179 AMYNLDDS-IRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQF 237 ++ + I F A + K YD + + Sbjct: 215 SVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRIAEEQGKDAANKAQSEAE 274 Query: 238 DELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITA 296 I + D + + + + A N +GD SD +A G +G+ I Sbjct: 275 AAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQVGGIGIAPGANINY 334 Query: 297 DGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAEN 356 + EA HGT ++ + N + I + L H + A+ Sbjct: 335 ETGHAIFEATHGTAPKYAGLDK------VNPSSVILSGVLLLEHLG-------WNEAADL 381 Query: 357 LERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKISDNL 398 + + KT+ +T D A L+ + ++F E++ N+ Sbjct: 382 VIKSMEKTIASKVVTYDFARLMDGAT-EVKCSEFGEELIKNM 422 >3dms_A Isocitrate dehydrogenase [NADP]; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A 1cw1_A* ... Length = 427 Score = 177 bits (451), Expect = 3e-45 Identities = 80/436 (18%), Positives = 147/436 (33%), Gaps = 67/436 (15%) Query: 1 MKKIKVTK---------PVVSL---DG------DEMTRIIWQLIQENLIHPYLDIKIEYF 42 KI V K P++ DG M +++ E I Sbjct: 20 GDKITVNKDFSLNVSDQPIIPYIEGDGTGFDITPVMIKVV-DAAVEKAYGGKKKIHWMEI 78 Query: 43 DLSIQNRDLTDDQVTI--DAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKSPNGTIR 100 + + V + + +K V IK T +S N +R Sbjct: 79 YAGEKATKVYGPDVWLPEETLQVLKEYVVSIKGPLTTPV---------GGGIRSLNVALR 129 Query: 101 NILGGIIFREPIIC-SNVPR-LIPGWKKPIIIGRHAFGDQYRATDFQFPS-KGKLILKFV 157 L + PI VP + K ++I R D Y ++ S + K ++KF+ Sbjct: 130 QELDLYVCLRPIQYFKGVPSPVREPEKTNMVIFRENSEDIYAGIEWAAESEQAKKVIKFL 189 Query: 158 GDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLP-LYLSTKDTILKS 216 ++ + + G GI + R A+QYA+ + L K I+K Sbjct: 190 QEEMGVKKIRFPQTSGIGI---KPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKF 246 Query: 217 YDGRFKNIFNEIFEAEFKNQFDELG-------------ITYTHRLIDDMVASSIKWSGGY 263 +G F++ + + EF + + G I + D + + Y Sbjct: 247 TEGAFRDAGYALAQKEFGAELIDGGPWMKFKNPKTGNEIVVKDSIADAFLQQILLRPAEY 306 Query: 264 -IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKE 322 + A N +GD SD +A G +G+ ++ EA HGT ++ + Sbjct: 307 DVIATLNLNGDYISDALAAQVGGIGIAPGANLSDSV--AMFEATHGTAPKYAGKD----- 359 Query: 323 TSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQ 382 N + I + L H + A+ + K+++ +T D A L+ Sbjct: 360 -YVNPGSEILSAEMMLRHLG-------WTEAADVIISAMEKSIKQKRVTYDFARLMEGAT 411 Query: 383 DWLSTTDFIEKISDNL 398 +S + F + + +N+ Sbjct: 412 Q-VSCSGFGQVLIENM 426 >1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Length = 435 Score = 141 bits (357), Expect = 2e-34 Identities = 73/426 (17%), Positives = 135/426 (31%), Gaps = 57/426 (13%) Query: 3 KIKVT-KPVVSL---DG------DEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLT 52 ++V PVV+ DG + +++ + + I R+ Sbjct: 29 SLRVPDNPVVAFIRGDGVGPEVVESALKVV-DAAVKKVYGGSRRIVWWELLAGHLAREKC 87 Query: 53 DDQVTIDAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPI 112 + + I+ V +K T ++S N IR L P+ Sbjct: 88 GELLPKATLEGIRLARVALKGPLETPVGTG---------YRSLNVAIRQALDLYANIRPV 138 Query: 113 ICSNVP--RLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKEVFD 170 P +I + + I +F+ + E + Sbjct: 139 RYYGQPAPHKYADRVDMVIFRENTEDVYAGIEWPHDSPEAARIRRFLAE-----EFGISI 193 Query: 171 SPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFE 230 +GI + + + R RA + + K I+K +G F E+ Sbjct: 194 REDAGIGVKPISRFATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVAL 253 Query: 231 AEFK--------------NQFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQ 275 +F+ E I R+ D+M+ I Y + N +GD Sbjct: 254 EKFREHVVTEQEVQEKYGGVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYI 313 Query: 276 SDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWT 335 SD + G +G+ + DG + E HGT ++ GK+ N A I + + Sbjct: 314 SDAASALVGGIGMAAGM-NMGDGIAV-AEPVHGTAPKY-----AGKDLI-NPSAEILSAS 365 Query: 336 RGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKIS 395 + E +E K V+ +T+DLA + P L T+++ E + Sbjct: 366 LLIGEFMGWRE------VKSIVEYAIRKAVQSKKVTQDLARHM-PGVQPLRTSEYTETLI 418 Query: 396 DNLRDA 401 + +A Sbjct: 419 AYIDEA 424 >2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Length = 412 Score = 132 bits (334), Expect = 1e-31 Identities = 72/383 (18%), Positives = 132/383 (34%), Gaps = 49/383 (12%) Query: 35 LDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKS 94 ++ L + + D +AIK V +K T ++S Sbjct: 59 KEVVWFQVYAGEDAYKLYGNYLPDDTLNAIKEFRVALKGPLTTPVGGG---------YRS 109 Query: 95 PNGTIRNILGGIIFREPIIC---SNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGK 151 N TIR +L P+ P P +I + + + Sbjct: 110 LNVTIRQVLDLYANVRPVYYLKGVPSPIKHPEKVNFVIFRENTEDVYAGIEWPRGSEEAL 169 Query: 152 LILKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKD 211 +++F+ ++ V SGI + + + R A + + L K Sbjct: 170 KLIRFLKNE-----FGVTIREDSGIGIKPISEFATKRLVRMAIRYAIENNRKSVTLVHKG 224 Query: 212 TILKSYDGRFKNIFNEIFEAEFK--------------NQFDELGITYTHRLIDDMVASSI 257 I+K +G F++ E+ + EF + E I R+ D+M + Sbjct: 225 NIMKYTEGAFRDWGYEVAKQEFGEYCITEDELWDKYGGKQPEGKIVVKDRIADNMFQQIL 284 Query: 258 KWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQ 316 + Y + A N +GD SD A G LG+ I DG + E HG+ ++ Q Sbjct: 285 TRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGSNIG-DGIGVF-EPVHGSAPKYAGQ 342 Query: 317 HQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLAL 376 ++ N A I + K +E +++ T+ G +T D+ Sbjct: 343 NK------VNPTAEILTGALMFEYIG-------WKDASEMIKKAVEMTISSGIVTYDIHR 389 Query: 377 LIGPEQDWLSTTDFIEKISDNLR 399 +G + + T +F E + +NL+ Sbjct: 390 HMGGTK--VGTREFAEAVVENLQ 410 >1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Length = 363 Score = 128 bits (323), Expect = 2e-30 Identities = 60/374 (16%), Positives = 116/374 (31%), Gaps = 52/374 (13%) Query: 35 LDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVK-----EFNLK 89 + I ++D+ D + + + + + E Sbjct: 36 MRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPKWENLPPESQPERGAL 95 Query: 90 KMWKSPNGTIRNILGGIIFREPIICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSK 149 + N+ +++ + I I+ R G Y Sbjct: 96 LPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYF--------- 146 Query: 150 GKLILKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLST 209 GQ +E +Y+ I AR A + A R+ + Sbjct: 147 -----------GQPKGREGSGQYEKAFDTEVYH-RFEIERIARIAFESARKRRRKVTSID 194 Query: 210 KDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYTHRLIDDMVASSIKWSGGY-IWACK 268 K +L+S + I N++ + H ID+ IK + + C Sbjct: 195 KANVLQSSILWRE-IVNDVA-------KTYPDVELAHMYIDNATMQLIKDPSQFDVLLCS 246 Query: 269 NYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSI 328 N GD+ SD A GS+G++ S + G + E A G+ ++ N I Sbjct: 247 NLFGDILSDECAMITGSMGMLPSASLNEQGFGLY-EPAGGSAPDIAGKNI------ANPI 299 Query: 329 ASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTT 388 A I + L + ++ A +E+ + +E+G T DL +ST Sbjct: 300 AQILSLALLLRYSLDAND------AATAIEQAINRALEEGVRTGDL----ARGAAAVSTD 349 Query: 389 DFIEKISDNLRDAL 402 + + I+ + + + Sbjct: 350 EMGDIIARYVAEGV 363 >2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Length = 409 Score = 125 bits (314), Expect = 2e-29 Identities = 86/422 (20%), Positives = 153/422 (36%), Gaps = 56/422 (13%) Query: 2 KKIKVTKPVVSL---DG------DEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLT 52 K I KPV+ DG + ++I + ++ +IK + L Sbjct: 18 KWIVPNKPVILYIEGDGIGPEITNAAIKVINKAVERAYGSS-REIKWLEVYAGEKAEKLV 76 Query: 53 DDQVTIDAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPI 112 +D+ + + V +K T WKS N IR +L P+ Sbjct: 77 NDRFPKETQEMLLKYRVVLKGPLETPIGKG---------WKSVNVAIRLMLDLYANIRPV 127 Query: 113 ICSN--VPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKEVFD 170 L K +II R D YR ++ F S+ K + ++ E+ D Sbjct: 128 KYIEGLESPLKHPEKVDMIIFRENTDDLYRGIEYPFNSEEAK--KIRDFLRKELKVEIED 185 Query: 171 SPGSGIAMAMYNLDDSIRNFARAAMQYALARQLP-LYLSTKDTILKSYDGRFKNIFNEIF 229 G GI + I R A+QYA+ + + + K ++K +G F+ E+ Sbjct: 186 DTGIGIKVMSKYKTQRIT---RLAIQYAIEHKRKKVTIMHKGNVMKYTEGAFREWAYEVA 242 Query: 230 EAEFK-----------NQFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSD 277 E++ + D+ I R+ D+M I Y I N +GD SD Sbjct: 243 LKEYRDFIVTEEEINQGKPDQGKIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISD 302 Query: 278 IVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRG 337 G++G++ I +G E A HGT ++ ++ N I A Sbjct: 303 AAGALIGNIGMLGGANIGDEGGMFE--AIHGTAPKYAGKNV------ANPTGIIKAGELM 354 Query: 338 LLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKISDN 397 L + A+ +E+ + D +T+D+A +G + L T ++ +++ Sbjct: 355 LRWMG-------WNEAADLIEKAINMAIRDKKVTQDIARFMGVKA--LGTKEYADELIKI 405 Query: 398 LR 399 + Sbjct: 406 MD 407 >1v53_A 3-isopropylmalate dehydrogenase; IPMDH, HOMO dimer, X-RAY analysis, oxidoreductase; 2.85A {Bacillus coagulans} SCOP: c.77.1.1 PDB: 2ayq_A 1v5b_A Length = 366 Score = 119 bits (298), Expect = 1e-27 Identities = 68/413 (16%), Positives = 136/413 (32%), Gaps = 62/413 (15%) Query: 3 KIKVTKPVVSLDGD----EMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTI 58 K+K+ L GD E+ ++++ L + + E + D + Sbjct: 2 KMKLA----VLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPE 57 Query: 59 DAAHAIKNCGVGIKCATITADQARVK-----EFNLKKMWKSPNGTIRNILGGIIFREPII 113 + + + A E L + K G N+ + + Sbjct: 58 ETLDICRRSDAILLGAVGGPKWDHNPASLRPEKGLLGLRK-EMGLFANLRPVKAYATLLN 116 Query: 114 CSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKEVFDSPG 173 S + R ++I R G Y E Sbjct: 117 ASPLKRERVE-NVDLVIVRELTGGLY----------------------FGRPSERRGPGE 153 Query: 174 SGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEF 233 + + + + I A Q A R+ L K +L+S ++ I E ++ Sbjct: 154 NEVVDTLAYTREEIERIIEKAFQLAQIRRKKLASVDKANVLES-SRMWREIAEET-AKKY 211 Query: 234 KNQFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSV 292 + + +H L+D I G + + +N GD+ SD + GSLG++ S Sbjct: 212 PD------VELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGSLGMLPSA 265 Query: 293 LITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKK 352 + +D M E HG+ Q + N + ++ + L + L++ A Sbjct: 266 SLRSDRFGMY-EPVHGSAPDIAGQGK------ANPLGTVLSAALMLRYSFGLEKEAAA-- 316 Query: 353 FAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKISDNLRDALQKN 405 +E+ ++DG+ T DL + G +ST + +++ + L ++ Sbjct: 317 ----IEKAVDDVLQDGYCTGDLQVANGKV---VSTIELTDRLIEKLNNSAAGP 362 >1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A* Length = 741 Score = 118 bits (297), Expect = 3e-27 Identities = 39/230 (16%), Positives = 78/230 (33%), Gaps = 17/230 (7%) Query: 136 GDQYRA--TDFQFPSKGKLILKFVGDDGQTI-EKEVFDSPGSGIAMAMYNLDDSIRNFAR 192 ++Y + FQ P+ G + + + G+ + E+ V I D I+++ + Sbjct: 417 AEEYGSHDKTFQIPADGVV--RVTDESGKLLLEQSVEAG---DIWRMCQAKDAPIQDWVK 471 Query: 193 AAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYTHRLIDDM 252 A+ A A P +++D + + L I ++ Sbjct: 472 LAVNRARATNTPAVFWLDPA--RAHDAQVIAKVERYLK---DYDTSGLDI-RILSPVEAT 525 Query: 253 VAS--SIKWSGGYIWACKNYDGDVQSDIVAQ-GFGSLGLMTSVLITADGKTMETEAAHGT 309 S I+ I N D +D+ G+ M S++ G + A G+ Sbjct: 526 RFSLARIREGKDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMSGGGLFETGAGGS 585 Query: 310 VTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLER 359 +H +Q + +S+ A L H +N + A L++ Sbjct: 586 APKHVQQFLEEGYLRWDSLGEFLALAASLEHLGNAYKNPKALVLASTLDQ 635 >1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Length = 366 Score = 117 bits (293), Expect = 6e-27 Identities = 69/396 (17%), Positives = 125/396 (31%), Gaps = 51/396 (12%) Query: 10 VVSLDGD----EMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIK 65 + L GD E+ R ++++ + + + D + + + Sbjct: 15 IAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICL 74 Query: 66 NCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPGWK 125 + + +R +L PI + K Sbjct: 75 EADAIFLGSVGGPKWDDLPPEKRP--EIGGLLALRKMLNLYANIRPIKVYRSLVHVSPLK 132 Query: 126 KPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDD 185 + +I D + + + G EK G +Y+ Sbjct: 133 EKVI---------GSGVDLVTVRELSYGVYYGQPRGLDEEK--------GFDTMIYDRKT 175 Query: 186 SIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYT 245 R AR A + A R+ + K +L S ++ + NE+ E+ + T Sbjct: 176 VER-IARTAFEIAKNRRKKVTSVDKANVLYS-SMLWRKVVNEVAR-EYP------DVELT 226 Query: 246 HRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETE 304 H +D+ I + + N GD+ SD A GSLGL+ S G E Sbjct: 227 HIYVDNAAMQLILKPSQFDVILTTNMFGDILSDESAALPGSLGLLPSASF---GDKNLYE 283 Query: 305 AAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKT 364 A G+ ++ N IA I + L H + E A +ER Sbjct: 284 PAGGSAPDIAGKNI------ANPIAQILSLAMMLEHSFGMVEEARK------IERAVELV 331 Query: 365 VEDGFMTKDLALLIGPEQDWLSTTDFIEKISDNLRD 400 +E+G+ T+D+A + +ST+ + I L + Sbjct: 332 IEEGYRTRDIA---EDPEKAVSTSQMGDLICKKLEE 364 >2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Length = 429 Score = 116 bits (292), Expect = 8e-27 Identities = 77/432 (17%), Positives = 140/432 (32%), Gaps = 66/432 (15%) Query: 3 KIKVT-KPVVSL---DG------DEMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLT 52 ++V +P++ DG M ++ + I + L Sbjct: 20 VLQVPDQPIIPFIEGDGIGCDVTPAMRSVV-DAAVAKVYGGQRQIAWMELFAGQKAVQLY 78 Query: 53 DDQVTI--DAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIFRE 110 + + + AI+ V IK T ++ N+ + F Sbjct: 79 GEGQYLPDETMAAIREYKVAIKGPLETPVGGGIRSLNVAMRQD--LDLYVCLRPVRYFEG 136 Query: 111 PIICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKEVFD 170 + P P +I ++ + + I++F+ ++ + D Sbjct: 137 ----TPSPMRHPEKVDMVIFRENSEDIYAGIEWPAGSPEAEKIIRFLREEMGVTKIRFPD 192 Query: 171 SPGSGIAMAMYNLDDSIRNFARAAMQYALARQLP-LYLSTKDTILKSYDGRFKNIFNEIF 229 S I + + + S R R QYAL P + L K I+K +G F++ + Sbjct: 193 --SSAIGIKPVSTEGSERLIRRTI-QYALEHGKPSVSLVHKGNIMKFTEGGFRDWGYALA 249 Query: 230 EAEFKNQ---------------------FDELGITYTHRLIDDMVASSI------KWSGG 262 E EF + ++ I +I D++A + + Sbjct: 250 EREFAGRVFTWRQKAAISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDY 309 Query: 263 YIWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKE 322 + A N +GD SD +A G +G+ ++ E A HGT Q + Sbjct: 310 SVVATLNLNGDYVSDALAAEVGGIGMAPGANLSDTHAIFE--ATHGTAPDIAGQGK---- 363 Query: 323 TSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQ 382 N + I + L H + A+ + T+ G +T DLA L G Sbjct: 364 --ANPSSLILSAVMMLEHLG-------WGEAAQAIVAAMNATIAAGEVTGDLAALRGDVP 414 Query: 383 DWLSTTDFIEKI 394 LSTT+F + Sbjct: 415 -ALSTTEFTAAL 425 >1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Thiobacillus ferrooxidans} SCOP: c.77.1.1 Length = 358 Score = 112 bits (281), Expect = 2e-25 Identities = 70/403 (17%), Positives = 131/403 (32%), Gaps = 54/403 (13%) Query: 1 MKKIKVTKPVVSLDGD----EMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQV 56 MKKI + GD E+ Q++ +L ++ + D +DD + Sbjct: 1 MKKIAI------FAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPL 54 Query: 57 TIDAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSN 116 + I A + +R L P Sbjct: 55 PAASLQLAMAADAVILGAVGGPRWDAYPPAKRPE---QGLLRLRKGLDLYANLRPA---- 107 Query: 117 VPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKEVFDSPGSGI 176 ++ P + + R D + + F GQ EV D G Sbjct: 108 --QIFPQLLDASPLR----PELVRDVDILVVRELTGDIYF----GQPRGLEVIDGKRRGF 157 Query: 177 AMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQ 236 +Y+ +D IR A A + A R+ L K +L++ ++ + E+ Sbjct: 158 NTMVYD-EDEIRRIAHVAFRAAQGRRKQLCSVDKANVLETTR-LWREVVTEVAR------ 209 Query: 237 FDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLIT 295 D + +H +D+ I+ + + N GD+ SD +Q GS+G++ S + Sbjct: 210 -DYPDVRLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLG 268 Query: 296 ADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAE 355 E A + + G+ N +A+I + L H + +A+ Sbjct: 269 ------EGRAMYEPIHGSAPDIA-GQ-DKANPLATILSVAMMLRHSLNAEP------WAQ 314 Query: 356 NLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKISDNL 398 +E + ++ G T D+A P + T + + L Sbjct: 315 RVEAAVQRVLDQGLRTADIA---APGTPVIGTKAMGAAVVNAL 354 >1g2u_A IPMDH, 3-isopropylmalate dehydrogenase; beta-barrel, NAD binding, oxidoreductase; 2.10A {Thermus thermophilus HB8} SCOP: c.77.1.1 PDB: 1osj_A 1gc8_A 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1gc9_A 1ipd_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Length = 345 Score = 109 bits (274), Expect = 1e-24 Identities = 61/394 (15%), Positives = 110/394 (27%), Gaps = 57/394 (14%) Query: 10 VVSLDGD----EMTRIIWQLIQENLIHPYLDIKIEYFDLSIQNRDLTDDQVTIDAAHAIK 65 V L GD E+T ++++ L + E F D + ++ Sbjct: 3 VAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVE 62 Query: 66 NCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPGWK 125 + + K ++ ++R P + K Sbjct: 63 EAEAVLLGSVGGPK---WDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLK 119 Query: 126 KPIIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDD 185 + I G +L G E + Sbjct: 120 EEIARGVD-------------------VLIVRELTGGIYFGEPRGMSEAEAWNTERYSKP 160 Query: 186 SIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYT 245 + AR A + A R+ + K +L+ + K + + + Sbjct: 161 EVERVARVAFEVARKRRKHVVSVDKANVLEVGEFWRKTVE--------EVGRGYPDVALE 212 Query: 246 HRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLITADGKTMETE 304 H+ +D M ++ + + N GD+ SD+ + GSLGL+ S + T E Sbjct: 213 HQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRG--TPVFE 270 Query: 305 AAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKT 364 HG+ + N A+I + L H L E A +E K Sbjct: 271 PVHGSAPDIAGKGI------ANPTAAILSAAMMLEHAFGLVELARK------VEDAVAKA 318 Query: 365 VEDGFMTKDLALLIGPEQDWLSTTDFIEKISDNL 398 + + DL G T F + +L Sbjct: 319 LLET-PPPDLG---GS----AGTEAFTATVLRHL 344 >3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Length = 364 Score = 102 bits (254), Expect = 2e-22 Identities = 53/410 (12%), Positives = 116/410 (28%), Gaps = 62/410 (15%) Query: 1 MKKIKVTKPVVSLDGD----EMTRIIWQLIQENLIHPYLDIKIEYFDL-SIQNRDLTDDQ 55 ++ ++ GD E+ ++++ + L ++ + F+ S Sbjct: 3 AHSFRIA----AIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKM 58 Query: 56 VTIDAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICS 115 + D A +K A D+ R + P+ Sbjct: 59 MPDDWAEQLKQYDAIYFGAVGWPDKVPDH-----ISLWGSLLKFRREFDQYVNIRPVRLF 113 Query: 116 NVPRLIPGWKKP----IIIGRHAFGDQYRATDFQFPSKGKLILKFVGDDGQTIEKEVFDS 171 +K ++ R +Y + ++ Sbjct: 114 PGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMF---------------------ENT 152 Query: 172 PGSGIAMAMYNLDDSIRNFARAAMQYALARQLP-LYLSTKDTILKSYDGRFKNIFNEIFE 230 + + + A A R+ + +TK + + Sbjct: 153 ENEIVIQESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEA--- 209 Query: 231 AEFKNQFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDGDVQSDIVAQGFGSLGLM 289 +++ + ID + A + + + N GD+ SD+ G++G+ Sbjct: 210 ----MAAHYPHVSWDKQHIDILCARFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIA 265 Query: 290 TSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLLHRAKLDENAE 349 S + + + GK + N IA I++ L + DE Sbjct: 266 PSANLNPE----RNFPSLFEPVHGSAPDIFGKNIA-NPIAMIWSGALMLEFLGQGDER-- 318 Query: 350 LKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEKISDNLR 399 ++ +++ + + DG +T D+ G LST ISD L Sbjct: 319 YQRAHDDMLNAIERVIADGSVTPDMG---GT----LSTQQVGAAISDTLA 361 >1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Length = 336 Score = 98.0 bits (243), Expect = 3e-21 Identities = 54/367 (14%), Positives = 109/367 (29%), Gaps = 67/367 (18%) Query: 35 LDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKS 94 L I+ + + + + D+ I + +K + + Sbjct: 33 LPIEYIEVEAGDRALARYGEALPKDSLKIIDKADIILKG-------------PVGESAAD 79 Query: 95 PNGTIRNILGGIIFREPIICSNVPRL-IPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLI 153 +R I P ++P + I+I R D Y+ + + Sbjct: 80 VVVKLRQIYDMYANIRP--AKSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVSDGVAVG 137 Query: 154 LKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTI 213 +K + A+ + +AL R+ + K + Sbjct: 138 MKIITRFA-------------------------SERIAKVGLNFALRRRKKVTCVHKANV 172 Query: 214 LKSYDGRFKNIFNEIFEAEFKNQFDELGITYTHRLIDDMVASSIKWSGGY-IWACKNYDG 272 ++ DG F + + + + Y+ +D A+ ++ + + +N G Sbjct: 173 MRITDGLFAEACRSVLKGK---------VEYSEMYVDAAAANLVRNPQMFDVIVTENVYG 223 Query: 273 DVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIF 332 D+ SD +Q GSLG+ S I E + N A + Sbjct: 224 DILSDEASQIAGSLGIAPSANIGDKKALFEPVHGAA--------FDIAGKNIGNPTAFLL 275 Query: 333 AWTRGLLHRAKLDENAELKKFAENLERVCIKTV-EDGFMTKDLALLIGPEQDWLSTTDFI 391 + + +L + K + LE E +T D+ G +T D I Sbjct: 276 SVSMMYERMYELSNDDRYIKASRALENAIYLVYKERKALTPDVG---GN----ATTDDLI 328 Query: 392 EKISDNL 398 +I + L Sbjct: 329 NEIYNKL 335 >2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus HB8} Length = 496 Score = 94.7 bits (235), Expect = 4e-20 Identities = 62/372 (16%), Positives = 111/372 (29%), Gaps = 61/372 (16%) Query: 36 DIKIEYFDLSIQ-NRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKS 94 + E + R V + +I+ V +K T KS Sbjct: 48 PLAYEVREAGASVFRRGIASGVPQETIESIRKTRVVLKGPLETPV---------GYGEKS 98 Query: 95 PNGTIRNILGGIIFREPI-ICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLI 153 N T+R + P+ NVP G +++ R D Y Sbjct: 99 ANVTLRKLFETYANVRPVREFPNVPTPYAGRGIDLVVVRENVEDLYAG------------ 146 Query: 154 LKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTI 213 E +P + + + S + A + ++ +TK I Sbjct: 147 ------------IEHMQTPSVAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCATKSNI 194 Query: 214 LKSYDGRFKNIFNEIFEAEFKNQFDELGITYTHRLIDDMVASSIKWSGGYIWACKNYDGD 273 +K +G K F ++ E+ + +V + + N +GD Sbjct: 195 MKLAEGTLKRAFEQV-AQEYPDIE--AVHIIVDNAAHQLVK---RPEQFEVIVTTNMNGD 248 Query: 274 VQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFA 333 + SD+ + G LG S I + E GK N A + + Sbjct: 249 ILSDLTSGLIGGLGFAPSANIGNEVAIFEA-------VHGSAPKYAGK-NVINPTAVLLS 300 Query: 334 WTRGLLHRAKLDENAELKKFAENLERVCIKTVEDG-FMTKDLALLIGPEQDWLSTTDFIE 392 L + + + +E + T+E+G +T D+ TT++ E Sbjct: 301 AVMMLRYLEEFATA-------DLIENALLYTLEEGRVLTGDV----VGYDRGAKTTEYTE 349 Query: 393 KISDNLRDALQK 404 I NL +K Sbjct: 350 AIIQNLGKTPRK 361 >1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosynthesis; 1.85A {Thermus thermophilus} Length = 333 Score = 89.8 bits (222), Expect = 1e-18 Identities = 62/368 (16%), Positives = 111/368 (30%), Gaps = 66/368 (17%) Query: 35 LDIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKS 94 L ++ + + + V + I +C + A + + + Sbjct: 29 LPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATLFGAATSPTRKVPG-------FFG 81 Query: 95 PNGTIRNILGGIIFREPIICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLIL 154 +R L P VP PG ++I R Y + ++ Sbjct: 82 AIRYLRRRLDLYANVRPAKSRPVPGSRPGVD--LVIVRENTEGLYVEQERRY-------- 131 Query: 155 KFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLS-TKDTI 213 ++ + D+ S A RAA++ A R K + Sbjct: 132 ---------LDVAIADAVISKKA---------SERIGRAALRIAEGRPRKTLHIAHKANV 173 Query: 214 LKSYDGRFKNIFNEIFEAEFKNQFDELGITYTHRLIDDMVASSIKW-SGGYIWACKNYDG 272 L G F + E+ + D + ++D+ + + N G Sbjct: 174 LPLTQGLFLDTVKEVAK-------DFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLG 226 Query: 273 DVQSDIVAQGFGSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIF 332 D+ SD+ A G LGL S T E HG+ + N A+I Sbjct: 227 DILSDLAAGLVGGLGLAPS--GNIGDTTAVFEPVHGSAPDIAGKGI------ANPTAAIL 278 Query: 333 AWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIE 392 + L + K+ A+ +E+ +E G T DL G +T F E Sbjct: 279 SAAMMLDYLG-------EKEAAKRVEKAVDLVLERGPRTPDLG---GD----ATTEAFTE 324 Query: 393 KISDNLRD 400 + + L+ Sbjct: 325 AVVEALKS 332 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 58.0 bits (140), Expect = 4e-09 Identities = 62/400 (15%), Positives = 115/400 (28%), Gaps = 181/400 (45%) Query: 120 LIPGWKKPIIIGRHAFGDQYR--------------ATDFQFPSKGKLILKFVG------- 158 L+P Q + A D + + +L+ KF+G Sbjct: 21 LVP-------TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVE 73 Query: 159 DDGQTIEKEV-------FDS---PGSGIAMAMYNLDDS-----------IRNF--ARAAM 195 +V F++ G+ I L I+N+ AR Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133 Query: 196 QYALARQLP--LYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQ------FDELGITY-TH 246 + ++ L+ + + G + + A F Q F+EL Y T+ Sbjct: 134 KRPFDKKSNSALFRAVGE-------GNAQ-----LV-AIFGGQGNTDDYFEELRDLYQTY 180 Query: 247 R-LIDDMVASS------------------------IKW------------------SG-- 261 L+ D++ S ++W S Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240 Query: 262 -G------YIWACKNYD---GDVQSDIV-AQGFGSLGLMTSVLI-TADGKTMET--EAAH 307 G Y+ K G+++S + A G S GL+T+V I D + E+ + Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH-SQGLVTAVAIAETD--SWESFFVSVR 297 Query: 308 GTVTR----HYRQHQQGKETS------TNSIA----------SIFAWTRGLLHRAKLDE- 346 +T R ++ TS +S+ SI L + ++ + Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI----SN-LTQEQVQDY 352 Query: 347 ----NAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQ 382 N+ L ++V I +L+ G + Sbjct: 353 VNKTNSHL---PAG-KQVEI------------SLVNGAKN 376 Score = 41.5 bits (97), Expect = 3e-04 Identities = 36/252 (14%), Positives = 67/252 (26%), Gaps = 109/252 (43%) Query: 153 ILKFVGDDGQ------TIEKEVF-DS--PGSGIAMAMYNLDDSIRNFARAAMQYALA--- 200 +L F+G ++ + DS G+ M L SI N + +Q + Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM--L--SISNLTQEQVQDYVNKTN 357 Query: 201 RQLP----LYLS---TKDTI--------LKSYDGRFKNI------------FNEIFEAEF 233 LP + +S + L + + F+E + +F Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE-RKLKF 416 Query: 234 KNQFDELGIT------Y----THRLIDDMVASSIKWSGGYIWACKNYDGDVQSDIVAQGF 283 N+F L + + + D+V +++ ++ D Sbjct: 417 SNRF--LPVASPFHSHLLVPASDLINKDLVKNNVSFNA--------------KD------ 454 Query: 284 GSLGLMTSVLITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFA--------WT 335 + V T DG + R S + I W Sbjct: 455 ----IQIPVYDTFDGSDL-------------RVL------SGSISERIVDCIIRLPVKWE 491 Query: 336 RGLLHRAK--LD 345 +A LD Sbjct: 492 TTTQFKATHILD 503 Score = 39.9 bits (93), Expect = 0.001 Identities = 44/291 (15%), Positives = 78/291 (26%), Gaps = 155/291 (53%) Query: 44 LSIQNRDLTDDQV--TIDA--AH---------AIKN--------------CGV-----GI 71 LSI +LT +QV ++ +H ++ N G+ Sbjct: 339 LSI--SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396 Query: 72 KCATITADQARVKEFNLKKMWKSPNGTIRNILGGIIF--REPIICSNVPRLIPGWKKPII 129 K + DQ+R+ P F R+ SN R +P Sbjct: 397 KAPS-GLDQSRI-----------P------------FSERKLKF-SN--RFLP------- 422 Query: 130 IGRHA-FGDQY--RATDFQFPSKGKLILKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDS 186 + + F A+D LI K + + + I + +Y+ D Sbjct: 423 VA--SPFHSHLLVPASD--------LINKDLVKNNVSF-------NAKDIQIPVYDTFDG 465 Query: 187 IRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFEAEFKNQFDELGITYTH 246 D L+ G +I + Sbjct: 466 -----------------------SD--LRVLSG---SI--------------------SE 477 Query: 247 RLIDDMVASS-IKWSGGYIWACKNYDGDVQSDIVAQGFGS-----LGLMTS 291 R++ D + +KW + + I+ FG LG++T Sbjct: 478 RIV-DCIIRLPVKWE-----TTTQFKA---THILD--FGPGGASGLGVLTH 517 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 35.2 bits (80), Expect = 0.025 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 10/89 (11%) Query: 295 TADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTR--GLLHRAKLDENAELKK 352 T G M +E+ T R H + +I WTR GL+ + Sbjct: 633 TFGGDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSANNI-------- 684 Query: 353 FAENLERVCIKTVEDGFMTKDLALLIGPE 381 AE +E++ ++T M +L L+ PE Sbjct: 685 IAEGIEKMGVRTFSQKEMAFNLLGLLTPE 713 >1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, structural genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Length = 337 Score = 31.0 bits (69), Expect = 0.49 Identities = 52/341 (15%), Positives = 95/341 (27%), Gaps = 41/341 (12%) Query: 36 DIKIEYFDLSIQNRDLTDDQVTIDAAHAIKNCGVGIKCATITADQARVKEFNLKKMWKSP 95 ++ +DL + T + + ++N + A + + Sbjct: 30 GVQKTSYDLGARRFHATGEVLPDSVVAELRNHDAILLGAIGDPSVPS------GVLERGL 83 Query: 96 NGTIRNILGGIIFREPIICSNVPRLIPGWKKPIIIGRHAFGDQYRATDFQFPSKGKLILK 155 +R L N+ +P + F + Sbjct: 84 LLRLRFELD--------HHINL--------RPARLYPGVASPLSGNPGIDFVVVREGTEG 127 Query: 156 FVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALARQLPLYLSTKDTILK 215 +G I +P N +R A + A R+ L L K +L Sbjct: 128 PYTGNGGAIR---VGTPNEVATEVSVNTAFGVRRVVADAFERARRRRKHLTLVHKTNVLT 184 Query: 216 SYDGRFKNIFNEIFEAEFKNQFDELGITYTHRLIDDMVASSIKWSGGYIWACKNYDGDVQ 275 G + +E+ E + Y H + + I N GD+ Sbjct: 185 FAGGLWLRTVDEVGECYPDVEVA-----YQHVDAATIHMITDPGRFDVI-VTDNLFGDII 238 Query: 276 SDIVAQGFGSLGLMTSVLITADGKTMET-EAAHGTVTRHYRQHQQGKETSTNSIASIFAW 334 +D+ A G +GL S I A E HG+ G+ + + A+I + Sbjct: 239 TDLAAAVCGGIGLAASGNIDATRANPSMFEPVHGSA-----PDIAGQGIA-DPTAAIMSV 292 Query: 335 TRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLA 375 L H L E+ + +E + T D+ Sbjct: 293 ALLLSH---LGEHDAAARVDRAVEAHLATRGSERLATSDVG 330 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 30.0 bits (66), Expect = 1.1 Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 26/48 (54%) Query: 151 KL--ILKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQ 196 KL LK DD +P A+A+ +A M+ Sbjct: 24 KLQASLKLYADD---------SAP----ALAI-----------KATME 47 Score = 29.2 bits (64), Expect = 2.0 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 4/26 (15%) Query: 343 KLDENAELKKFAEN-LERVCIK-TVE 366 KL A LK +A++ + IK T+E Sbjct: 24 KL--QASLKLYADDSAPALAIKATME 47 >3ofq_U 50S ribosomal protein L24; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 2j28_U* 3fik_U 2wwq_U 3ofr_U* 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U 3i20_U 3i22_U 3kcr_U 3orb_U* 3e1b_O 3e1d_O 2qam_U* 1p85_S 1p86_S ... Length = 102 Score = 28.1 bits (63), Expect = 4.1 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 76 ITADQARVKEFNLKKMWKSPNGTIRNILGGIIFRE-PIICSNVPRLIPGWKKPIIIG 131 +++ + V+ NL K + P N GGI+ +E I SNV K +G Sbjct: 28 LSSGKVIVEGINLVKKHQKPVPA-LNQPGGIVEKEAAIQVSNVAIFNAATGKADRVG 83 >1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1 Length = 271 Score = 28.1 bits (62), Expect = 4.2 Identities = 12/81 (14%), Positives = 33/81 (40%), Gaps = 3/81 (3%) Query: 329 ASIFAWTRGLLHRAKLDENAELKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTT 388 + R R + + +F+ NL+ + I + AL + E+ L Sbjct: 138 CNGVVLHRLQCVRGFGEWIDSIVEFSSNLQNMNIDISAFSCIA---ALAMVTERHGLKEP 194 Query: 389 DFIEKISDNLRDALQKNLSIS 409 +E++ + + + L+ +++ + Sbjct: 195 KRVEELQNKIVNCLKDHVTFN 215 >3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3} Length = 152 Score = 27.8 bits (61), Expect = 4.3 Identities = 12/95 (12%), Positives = 33/95 (34%), Gaps = 8/95 (8%) Query: 76 ITADQARVKEFNLKKMWKSPNGTIRNILGGIIFREPIICSNVPRLIPGWKKPIIIGRHAF 135 +T Q + L+ + +P T + + + R++ ++ +I R Sbjct: 38 VTVGQRAI----LEGLSLTPGATAPQLGA----ALQMKRQYISRILQEVQRAGLIERRTN 89 Query: 136 GDQYRATDFQFPSKGKLILKFVGDDGQTIEKEVFD 170 + R+ + +G+ I+ + D + Sbjct: 90 PEHARSHRYWLTPRGEAIITAIRADEMAKLALFSE 124 >3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens} Length = 144 Score = 27.6 bits (61), Expect = 4.9 Identities = 15/108 (13%), Positives = 37/108 (34%), Gaps = 18/108 (16%) Query: 216 SYDGRFKNIFN------EIFEAEFKNQFDELGITYTHRLIDDMVASSIKWSGGY--IWAC 267 DG+F + N + E + + ++Y + + +G IWA Sbjct: 34 DVDGKFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYK------YTSRYVLKAGQTVTIWAA 87 Query: 268 K-NYDGDVQSDIVAQG---FGSLGLMTSVLITADGKTMETEAAHGTVT 311 +D++ + +G+ + +L + G+ + + T Sbjct: 88 NAGVTASPPTDLIWKNQNSWGTGEDVKVILKNSQGEEVAQRSTVFKTT 135 >3fn9_A Putative beta-galactosidase; structural genomics, glycosidase, hydrolase, PSI-2; 2.70A {Bacteroides fragilis nctc 9343} Length = 692 Score = 27.5 bits (60), Expect = 5.4 Identities = 9/55 (16%), Positives = 18/55 (32%) Query: 236 QFDELGITYTHRLIDDMVASSIKWSGGYIWACKNYDGDVQSDIVAQGFGSLGLMT 290 + E T TH ++ Y+W ++ + + GL+T Sbjct: 508 FYPETFQTKTHEYQWSIIKDHPYIIASYLWNMFDFAVPMWTRGGVPARNMKGLIT 562 >3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 1xap_A* 2lbd_A* 3lbd_A* 4lbd_A* Length = 266 Score = 27.7 bits (61), Expect = 5.6 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Query: 335 TRGLLHRAKLDENAE-LKKFAENLERVCIKTVEDGFMTKDLALLIGPEQDWLSTTDFIEK 393 R +H A + + FA L + + E G ++ LI ++ L D ++ Sbjct: 138 NRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSA--ICLICGDRQDLEQPDRVDM 195 Query: 394 ISDNLRDALQK 404 + + L +AL+ Sbjct: 196 LQEPLLEALKV 206 >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* Length = 2060 Score = 27.1 bits (60), Expect = 7.1 Identities = 13/77 (16%), Positives = 36/77 (46%) Query: 141 ATDFQFPSKGKLILKFVGDDGQTIEKEVFDSPGSGIAMAMYNLDDSIRNFARAAMQYALA 200 A D + S +L+ +++ +++ D+ + + + L++ R F R +A+A Sbjct: 46 AQDDEPSSVVELVARYIAFVAHEVDEGDEDAHPTNLEVLKLILNEFERAFMRGNDVHAIA 105 Query: 201 RQLPLYLSTKDTILKSY 217 + + K ++++Y Sbjct: 106 ANVAGITAKKIGVVRAY 122 >2wa0_A Melanoma-associated antigen 4; immune system, multiple anomalous dispersion, cancer/testis antigen 1.4, melanoma antigen family A 4, CT1.4, MAGE-41; 2.30A {Homo sapiens} Length = 240 Score = 27.1 bits (60), Expect = 7.3 Identities = 10/48 (20%), Positives = 18/48 (37%) Query: 183 LDDSIRNFARAAMQYALARQLPLYLSTKDTILKSYDGRFKNIFNEIFE 230 +++ N + L + L TK +L+ +K F IF Sbjct: 29 FREALSNKVDELAHFLLRKYRAKELVTKAEMLERVIKNYKRCFPVIFG 76 >1q87_A 39 kDa initiator binding protein; INR, core promoter, DNA binding protein; 2.32A {Trichomonas vaginalis} SCOP: e.47.1.1 PDB: 1q88_A 1q89_A Length = 221 Score = 26.9 bits (59), Expect = 7.8 Identities = 8/41 (19%), Positives = 18/41 (43%) Query: 293 LITADGKTMETEAAHGTVTRHYRQHQQGKETSTNSIASIFA 333 L T+ + +++Q +Q K+ + I++I A Sbjct: 46 LTQKTDGTVMRDFLIEKAAEYFKQPEQPKQNAIEVISAIMA 86 >1s9a_A Pyrocatechase, chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGP TAM; 2.47A {Rhodococcus opacus} SCOP: b.3.6.1 Length = 257 Score = 26.9 bits (59), Expect = 9.1 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 3/79 (3%) Query: 95 PNGTIRNILGGIIFREPIICSNVPRLIPGWKKPIIIGRHAF-GDQYRATDFQFPSKGKLI 153 G ++ + R +++ I +I + F GD Y +D K +L+ Sbjct: 173 KAGPTGQLMNSYLGRHSWRPAHIHIRITADGYRPLITQLYFEGDPYLDSDSCSAVKSELV 232 Query: 154 LKF--VGDDGQTIEKEVFD 170 L + DG+T + F+ Sbjct: 233 LPVNKIDIDGETWQLVDFN 251 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.137 0.404 Gapped Lambda K H 0.267 0.0697 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,698,100 Number of extensions: 177340 Number of successful extensions: 808 Number of sequences better than 10.0: 1 Number of HSP's gapped: 758 Number of HSP's successfully gapped: 43 Length of query: 412 Length of database: 5,693,230 Length adjustment: 95 Effective length of query: 317 Effective length of database: 3,390,050 Effective search space: 1074645850 Effective search space used: 1074645850 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.2 bits)