HHsearch alignment for GI: 254780903 and conserved domain: COG0642

>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms].
Probab=100.00  E-value=8.4e-34  Score=262.00  Aligned_cols=214  Identities=36%  Similarity=0.590  Sum_probs=189.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCEEEE
Q ss_conf             99999998767522247899999999860346889938999999999999999999977767788874198-30120331
Q gi|254780903|r  542 TKSEFLAKMSHELRTPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEMSKIETEK-ISIDKQNA  620 (766)
Q Consensus       542 ~k~efla~isHelrtPL~aI~g~~ell~~~~~~~~~~e~~~~~l~~I~~~~~~l~~lI~diLd~srieag~-~~~~~~~~  620 (766)
T Consensus       114 ~~~~~~~~~~hel~~pl~~~~~~~~~~~~~---~~--~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  188 (336)
T COG0642         114 AKREFLANISHELRTPLTAIRGLLELLLEG---LL--DPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELV  188 (336)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC---CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             999999999888589799999999997414---65--2599999999999999999999999999764457442234645


Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEEEEEC
Q ss_conf             69999999999999999847958999808997899868999999999886565346898889999999799899999978
Q gi|254780903|r  621 DLIPIINEGIRLIGSSAQSKNIKIEKKIPSELFFNADKRIIKKILFPILSNSIKFTNNNGKMMIRTSKIGQCVIITIADT  700 (766)
Q Consensus       621 dl~~~i~~~~~~~~~~~~~k~i~l~~~~~~~l~v~~D~~~l~QVl~NLi~NAik~t~~~g~I~i~~~~~~~~v~i~V~D~  700 (766)
T Consensus       189 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~vl~nLi~NAi~~~~-~~~i~i~~~~~~~~i~i~V~D~  267 (336)
T COG0642         189 DLAELLEEVVRLLAPLAQEKGIELAVDLPELPYVLGDPERLRQVLVNLLSNAIKYTP-GGEITISVRQDDEQVTISVEDT  267 (336)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEECCCEEEEEEECC
T ss_conf             599999999999998766348489982376607860788999999999998998668-9859999996387799999807


Q ss_pred             CCCCCHHHHHHHCCCEEECCCCCCCCCC-CCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCC
Q ss_conf             8978977854304650531467556778-87616899999999629869999798995299997359
Q gi|254780903|r  701 GIGIPKSALEKIGQPFEPLHNQYDQSIG-GFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMPQ  766 (766)
Q Consensus       701 G~GI~~e~~~~iF~pF~q~~~~~t~~~~-GtGLGLaI~k~iVe~hgG~I~v~S~~g~Gttf~i~LP~  766 (766)
T Consensus       268 G~Gi~~~~~~~if~~~~~~-----~~~~~g~GlGL~i~~~~~~~~~g~i~~~~~~~~Gt~~~i~lP~  329 (336)
T COG0642         268 GPGIPEEELERIFEPFFRT-----DKSRSGTGLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPL  329 (336)
T ss_pred             CCCCCHHHHHHHHCCCCCC-----CCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEEC
T ss_conf             8997988999881886347-----9998988632999999999879989995079997799999847