HHsearch alignment for GI: 254780903 and conserved domain: COG0643
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].
Probab=99.84 E-value=8.5e-18 Score=146.40 Aligned_cols=167 Identities=20% Similarity=0.406 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHH--HCCCEEEEEECCCCEEEECHHHHHH
Q ss_conf 99999999999997776778887419830120331699999999999999998--4795899980899789986899999
Q gi|254780903|r 586 QDIHYSGQHLLNMINNILEMSKIETEKISIDKQNADLIPIINEGIRLIGSSAQ--SKNIKIEKKIPSELFFNADKRIIKK 663 (766)
Q Consensus 586 ~~I~~~~~~l~~lI~diLd~srieag~~~~~~~~~dl~~~i~~~~~~~~~~~~--~k~i~l~~~~~~~l~v~~D~~~l~Q 663 (766)
T Consensus 364 ~el~~~~~~l~~~~~~LQd~v------m~~--RMvP~~~vf~RfpR~VRdla~~lgK~V~L~ieG~~---telDksIlE~ 432 (716)
T COG0643 364 EELDEALRQLSRLTTDLQDEV------MKI--RMVPFEQVFSRFPRMVRDLARKLGKQVELVIEGED---TELDKSILER 432 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHH--HCEEHHHHHHHCCHHHHHHHHHHCCEEEEEEECCC---EEEHHHHHHH
T ss_conf 999999999999999999999------997--00039998744409999999986991699996487---1342989988
Q ss_pred H---HHHHHHHHHHC------------CCCCCEEEEEEEEECCEEEEEEEECCCCCCHHH--------------------
Q ss_conf 9---99988656534------------689888999999979989999997889789778--------------------
Q gi|254780903|r 664 I---LFPILSNSIKF------------TNNNGKMMIRTSKIGQCVIITIADTGIGIPKSA-------------------- 708 (766)
Q Consensus 664 V---l~NLi~NAik~------------t~~~g~I~i~~~~~~~~v~i~V~D~G~GI~~e~-------------------- 708 (766)
T Consensus 433 l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lS 512 (716)
T COG0643 433 LGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLS 512 (716)
T ss_pred HCCCHHHHHHCCHHCCCCCHHHHHHCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHCCCC
T ss_conf 64669988850011058988999875989863699999837986999995689987999999999982998867752079
Q ss_pred ----HHHHCCC-EEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEECC
Q ss_conf ----5430465-05314675567788761689999999962986999979899529999735
Q gi|254780903|r 709 ----LEKIGQP-FEPLHNQYDQSIGGFGLGLAISDALTNLHGGRLKIISQEGKGTIVTICMP 765 (766)
Q Consensus 709 ----~~~iF~p-F~q~~~~~t~~~~GtGLGLaI~k~iVe~hgG~I~v~S~~g~Gttf~i~LP 765 (766)
T Consensus 513 d~Ei~~LIF~PGFSTa~~--VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LP 572 (716)
T COG0643 513 DEEILNLIFAPGFSTAEQ--VTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLP 572 (716)
T ss_pred HHHHHHHHHCCCCCCCHH--HHCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEECC
T ss_conf 999998873699873411--101657765789999999973998999962789769999668