HHsearch alignment for GI: 254780903 and conserved domain: COG2172
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms].
Probab=98.25 E-value=2.2e-05 Score=56.78 Aligned_cols=96 Identities=25% Similarity=0.221 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHHHHHHCCCC----CCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHCCCEEECCCCCCCCCC-CCC
Q ss_conf 6899999999988656534689----88899999997998999999788978977854304650531467556778-876
Q gi|254780903|r 657 DKRIIKKILFPILSNSIKFTNN----NGKMMIRTSKIGQCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIG-GFG 731 (766)
Q Consensus 657 D~~~l~QVl~NLi~NAik~t~~----~g~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~~iF~pF~q~~~~~t~~~~-GtG 731 (766)
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~~~i~i~D~G~~~--~~~~~~~~~~~-----~~~~~~~~~G 109 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGKLEIRIWDQGPGI--EDLEESLGPGD-----TTAEGLQEGG 109 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEEEECCCCC--CCHHHHCCCCC-----CCCCCCCCCC
T ss_conf 9999999999999899997630389986599999970993999999579898--78888538888-----8887532473
Q ss_pred HHHHHHHHHHHHCCCEEEEEEECCC---CEEEEEE
Q ss_conf 1689999999962986999979899---5299997
Q gi|254780903|r 732 LGLAISDALTNLHGGRLKIISQEGK---GTIVTIC 763 (766)
Q Consensus 732 LGLaI~k~iVe~hgG~I~v~S~~g~---Gttf~i~ 763 (766)
T Consensus 110 ~Gl~l~~~~~D----~~~~~~~~~~~~~~~~~~~~ 140 (146)
T COG2172 110 LGLFLAKRLMD----EFSYERSEDGRNRLTKITLR 140 (146)
T ss_pred CCHHHHHHHHE----EEEEEEECCCCEEEEEEEEC
T ss_conf 13788862110----79999606985589999962