HHsearch alignment for GI: 254780903 and conserved domain: COG2202

>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms].
Probab=98.37  E-value=0.0001  Score=52.02  Aligned_cols=190  Identities=13%  Similarity=0.244  Sum_probs=115.7

Q ss_pred             EEEECCCCEEEECHHHHHHCCCCHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEEEEEEE
Q ss_conf             98976897899978899772999433058988999760812058999999997248984899999886989889988999
Q gi|254780903|r  269 WNFNFDNKKFHLSRSMYEIMGIPYENKTLSFRAIARLIHYDNKKICEIARSVTGKHVKQLDQIFHMRHASGADIWIQVRA  348 (766)
Q Consensus       269 Wd~D~~~~~i~ws~~~~~llG~~~~e~~~s~~~~~~~vHPdDr~~~~~a~~~~~~~~~~~~~e~Ri~~~DG~~~Wi~~r~  348 (766)
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (232)
T COG2202           3 LVLDRDGRIIYANEAAEELLGYSAEELLG----LLLALHPEDRDRLRELLRRLLAGEELLSEELRLVRKDGEERWVELSA   78 (232)
T ss_pred             EEECCCCCEEEECHHHHHHHCCCHHHHHC----CHHCCCHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCEEEEEEEE
T ss_conf             47716664244415568875334465531----02101045677888999997630000001023541367447887410


Q ss_pred             EEEEECC-CEE-EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECHHHHHHHCCCHHHHCCCC
Q ss_conf             9998379-606-99999844617999999999999999999985445515883499699701789888399978942897
Q gi|254780903|r  349 QMMRTIS-GGM-NIIGIAMDLTEKYHLEKRYAEADQRLSKAIECTSEALVLWDKNDRLVMCNANYQKAYGLPDHVLVPGN  426 (766)
Q Consensus       349 ~~i~d~~-G~~-~~iGi~~DITErK~ae~~l~ese~rlr~~ie~~~~~i~~~D~~g~i~~~N~~~~~~~g~~~~~~~~~~  426 (766)
T Consensus        79 ~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~n~~~~~~~g~~~~~~~~~~  156 (232)
T COG2202          79 APL-RDGEGRVLGLLGL-RDITERKRAEEALRESEERLRALLEASPDGIWVLDEDGRILYANPAAEELLGYSPEEELGRG  156 (232)
T ss_pred             EEE-ECCCCHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHCCC
T ss_conf             011-1233035555301-11577888999987579999999956896799990999899975899998697989982776


Q ss_pred             CHHHHCCCHHH----HHHHHHHHCCCCCCCEEEEEEECCCEE
Q ss_conf             17881652013----789998521124564058999169628
Q gi|254780903|r  427 ARSIIQDAQTR----PIIEYRTSDPERSQDMSKEIKLADSRW  464 (766)
Q Consensus       427 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~e~~~~dg~~  464 (766)
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  198 (232)
T COG2202         157 LSDLIHPEDEERRELELARALAEGRGGPLEIEYRVRRKDGER  198 (232)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCE
T ss_conf             065403463046678999997524576405899999438979