HHsearch alignment for GI: 254780903 and conserved domain: COG2202
>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms].
Probab=98.37 E-value=0.0001 Score=52.02 Aligned_cols=190 Identities=13% Similarity=0.244 Sum_probs=115.7
Q ss_pred EEEECCCCEEEECHHHHHHCCCCHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEEEEEEE
Q ss_conf 98976897899978899772999433058988999760812058999999997248984899999886989889988999
Q gi|254780903|r 269 WNFNFDNKKFHLSRSMYEIMGIPYENKTLSFRAIARLIHYDNKKICEIARSVTGKHVKQLDQIFHMRHASGADIWIQVRA 348 (766)
Q Consensus 269 Wd~D~~~~~i~ws~~~~~llG~~~~e~~~s~~~~~~~vHPdDr~~~~~a~~~~~~~~~~~~~e~Ri~~~DG~~~Wi~~r~ 348 (766)
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (232)
T COG2202 3 LVLDRDGRIIYANEAAEELLGYSAEELLG----LLLALHPEDRDRLRELLRRLLAGEELLSEELRLVRKDGEERWVELSA 78 (232)
T ss_pred EEECCCCCEEEECHHHHHHHCCCHHHHHC----CHHCCCHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCEEEEEEEE
T ss_conf 47716664244415568875334465531----02101045677888999997630000001023541367447887410
Q ss_pred EEEEECC-CEE-EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECHHHHHHHCCCHHHHCCCC
Q ss_conf 9998379-606-99999844617999999999999999999985445515883499699701789888399978942897
Q gi|254780903|r 349 QMMRTIS-GGM-NIIGIAMDLTEKYHLEKRYAEADQRLSKAIECTSEALVLWDKNDRLVMCNANYQKAYGLPDHVLVPGN 426 (766)
Q Consensus 349 ~~i~d~~-G~~-~~iGi~~DITErK~ae~~l~ese~rlr~~ie~~~~~i~~~D~~g~i~~~N~~~~~~~g~~~~~~~~~~ 426 (766)
T Consensus 79 ~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~n~~~~~~~g~~~~~~~~~~ 156 (232)
T COG2202 79 APL-RDGEGRVLGLLGL-RDITERKRAEEALRESEERLRALLEASPDGIWVLDEDGRILYANPAAEELLGYSPEEELGRG 156 (232)
T ss_pred EEE-ECCCCHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHHHHCCC
T ss_conf 011-1233035555301-11577888999987579999999956896799990999899975899998697989982776
Q ss_pred CHHHHCCCHHH----HHHHHHHHCCCCCCCEEEEEEECCCEE
Q ss_conf 17881652013----789998521124564058999169628
Q gi|254780903|r 427 ARSIIQDAQTR----PIIEYRTSDPERSQDMSKEIKLADSRW 464 (766)
Q Consensus 427 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~e~~~~dg~~ 464 (766)
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 198 (232)
T COG2202 157 LSDLIHPEDEERRELELARALAEGRGGPLEIEYRVRRKDGER 198 (232)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCE
T ss_conf 065403463046678999997524576405899999438979